Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold80
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1499392
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.28
Warning! 217494 characters in sequence are not A, C, G, or T
File 1 of 8
Found at i:214 original size:101 final size:101
Alignment explanation
Indices: 6--12585 Score: 8946
Period size: 101 Copynumber: 125.0 Consensus size: 101
1 TCATA
* * * * *
6 AAAGATG-AGATGCCAAT-TGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGATGAAGGCA
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* *
69 CCAATATGCTGATTCAAGGCCAGTGATATCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
105 GAAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * ** * *
170 TTAATATGTTGATTCAAGGCCAGCGATACCGAACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * *
206 AAATATGAAGACGCCAACGTGCTGATTCAAGGCCAGCGACTTTGGACTTAAAGATGTCGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * *
271 CTAATATGCTGATTCAAGGACGGCGATATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
307 AAAGATGAA-A-GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A--AAGG
1 AAAGATGAAGATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGG
* * * *
367 TGCCAATATGCTGATTCAAGGCGAGCAATATCGGACTT
64 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * *
405 AAACATGAAGAAGCCCATGTGCTGATTCAAGCCCGGCGTCATTGGACATAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * *
470 CCAATATGTTGATTCAAGGCTAGCGATTTTGGATTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
506 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
***
571 CCAATATGCTGATTCAAGGCCAGCGATACCAGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * *
607 AAAGATCAAAATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTTAAAGATGACAAAGGCA
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** *
672 CCAATATGCTGATTCAAGGCCAATGATATCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
708 GAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGTTGACGAAAGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * * * * *
773 CTAATATGCTAAATCAAGGCCGGTGAAATCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
809 ACAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * ** *
874 TTAATATGTTGATTCAAGGCCAGCGATA-CCGATCAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGA-CTT
* * * *
910 AAATATGAAGATGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
*
975 CCAATATGCTGATTCAAGGCCGGCGATATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * ** *
1011 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * **
1076 CTAATATGGC-GAGTCAAGGCCAGCGATACCGGACTT
66 CCAATAT-GCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
1112 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACACTGCACTTAAAGATGACGAAGGCA
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* *
1177 CCAATATGCTGATTCAAGGCCAGTGATATCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
1213 GAAGATGAAGATGCCATTATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAAGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * * **
1278 CCAATATGCTAATTCAAGGCCGGTGAAATCAGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
1314 AAAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * ** * *
1379 TTAATATGTTGATTCAAGGCCAGCGATACCGAACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
1415 AAATATGAAGATGCCAACGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
1480 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
1516 AAAGATGAA-A-GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A--AAGG
1 AAAGATGAAGATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGG
* * *
1576 TGCCAATATGCTGATTCAAGGCGAGCGATATCGGACTT
64 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
1614 AAAGATGAAGAAGCCAATGTGCTGATTCAAGCCCGGCGACATTGGACATAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * *
1679 CCAATATGTTGATTCAAGGCTAGCGATATTGGATTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
1715 AAAGATGAAGATGCCAATGTGCCGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* **
1780 CCAATATGCTGATTCAAGGCCAGTGATACCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** *
1816 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGAAGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* ** **
1881 CTAATATGCCAATTCAAGGCCAGCGATACCGGAC-T
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
1916 AAGAGATGAAGATGCCAATGTGCTGATTCAAGGCGAGCGATATCGGACTTAAAGATGAAGAA---
1 AA-AGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGC
* * * *
1978 GCCAATGTGCTGATTCAAGCCCGGCGACATTGGACTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * ** *
2015 AAAGAAGACGAAGGCACCAATATGCTAATTCAAGGCCAGCGATTTTGGATTTAAAGAT---GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * *
2077 ATGCTAATGTGCTGAGTCTAA-GCCAGCGACATTAGACTT
63 GCGCCAATATGCTGATTC-AAGGCCAGCGATATTGGACTT
** ** * * *
2116 AAAGATGACGAAGGCGCCAACATGCTGATTCAAGGCCAGCAATATTGGATTTAAAGAT-A--AAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * * *
2178 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACAT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * ** * * * * * **
2217 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAATGATATCGAACATGAAGAT---GAAGATG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * *
2279 CCAATGTGCTAATTCAAGGCCAGCGACATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** * * *
2315 AAAAATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGAT---GAAG
1 --AAA-GATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * *
2377 GTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * **
2416 AAAGATGATGAAGGCGCTAATATGCCGAGTCAAGGCCAGCGATACCGGACTTAAAGAT---GAAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * *
2478 ATGCCAATGTGCTGATTCAAGGCTAGTGACATTGCACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * *
2517 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGATGA--ATA
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGA-A
* * *
2580 --TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * *
2618 AAAGATGATGTAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGAT---GAAG
1 AAAGATGAAG--A-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * **
2680 ATGCTAATGTGCGGATTCAAGGCCAGCGACATTGGGGTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** * * *
2719 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAAG
1 AAAGATGAAG-ATGC--CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** ** * *
2781 ATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
2820 AAAGATGACGAAGGTGCCAATATGCTGACTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * * *
2882 GCACCAATGTGCTGATTCAAGGCTAGCGACATTAGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * *
2921 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCGAGCGATATCGGACTTAAACATGAAGAA-GC-
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * *
2984 CC-ATGTGCTGATTCAA-GCCTGGCGACATTGGACAT
66 CCAATATGCTGATTCAAGGCC-AGCGATATTGGACTT
* * * * * ** *
3019 AAAGATGACGAAGGTGCCAATATGTTGATTCAACGCTAGCGATTTTGGA-TTAAA-A-GATGAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
3081 ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
3120 AAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCGGCGATATTGGACTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * *
3182 GTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * **
3221 AAAGATGATGAAGGCGCTAATATGGC-GAGTCAAGGCCAGCGATACCGGACTTAAAGAT---GAA
1 AAAGATGAAG-ATGC-C-AATGT-GCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAA
** * * * * * *
3282 GATGCCAATGTGCTGATTCAAGGCTAGTGACACTGCACTT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * *
3322 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGAT---GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
3384 ATGCCATTATGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * ** *
3423 AAAGATGATGAAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAGTTAAAGAT---GAAG
1 AAAGATGA--AGA-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
3485 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** * * *
3524 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAAG
1 AAAGATGAAG-ATGC--CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** **
3586 ATGCCAACGTGCTGATTCAAGGCCAGCGACT-TTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTT
* * *
3625 AAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * *
3687 GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * *
3726 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCGAGCGATATCGGACTTAAAGATGAAGAA---G
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * * *
3788 CCAATGTGCTGATTCAAGCCCGGCGACATTGGACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * *
3824 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATATTGGATTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
3886 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * **
3925 AAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGAT---GAAG
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
3987 ATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * ** * ** *
4026 AAAGATGACGAAGGCGCTAATATGCCAATTCAAGGCCAGCGATACCGGAC-T-AAGA-GATGAAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
4088 ATGCCAATGTGCTGATTCAAGGCGAGCGATATCGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
4127 AAAGATGAAGAAGCCAATGTGCTGATTCAAGCCCGGCGACATTGGACTTAAAGAAGACGAAGGCA
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * *
4192 CCAATATGCTAATTCAAGGCCAGCGATTTTGGATTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
4228 AAAGATGAAGATGCCAATGTGCTGAGTCTAA-GCCAGCGACATTAGACTTAAAGATGACGAAGGC
1 AAAGATGAAGATGCCAATGTGCTGATTC-AAGGCCAGCGACATTGGACTTAAAGATGACGAAGGC
* * *
4292 GCCAACATGCTGATTCAAGGCCAGCAATATTGGATTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
4329 AAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACATAAAGAT---GAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * * *
4391 CCAATATGCTGATTCAAGGCCAATGATATCGAACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
4427 GAAGATGAAGATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAAATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
*
4492 CCAATATGCTGATTCAAGGCCAGTGATATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * ** *
4528 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * **
4593 CTAATATGCCGAGTCAAGGCCAGCGATACCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
4629 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGACGAAGGCA
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* *
4694 CCAATATGCTGATTCAAGGCCAGTGATATCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
4730 GAAGATGAATATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGTAA-GC
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACG-AAGGC
* * * * *
4794 GCCAATATGCTAATTCAAGGCCGGTGAAATCGGACTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * **
4831 AAAGATGAAGATGCTAATGTGCGGATTCAAGGCCAGCGACATTGGGGTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * ** * *
4896 TTAATATGTTGATTCAAGGCCAGCGATACCGAACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
4932 AAATATGAAGATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
*
4997 CCAATATGCTGACTCAAGGCCAGCGATATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
5033 AAAGATGAA-A-GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A--AAGG
1 AAAGATGAAGATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGG
* * *
5093 TGCCAATATGCTGATTCAAGGCGAGCGATATCGGACTT
64 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
5131 AAACATGAAGAAGCCCATGTGCTGATTCAA-GCCTGGCGACATTGGACATAAAGATGACGAAGGC
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCC-AGCGACATTGGACTTAAAGATGACGAAGGC
* * * * *
5195 GCCAATATGTTGATTCAACGCTAGCGATTTTGGATTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
5232 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * * *
5297 CCAATATGCTGATTCAAGGCCAATGATATCGAACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
5333 GAAGATGAAGATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAAATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
*
5398 CCAATATGCTGATTCAAGGCCAGTGATATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * ** *
5434 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * **
5499 CTAATATGCCGAGTCAAGGCCAGCGATACCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
5535 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGACGAAGGCA
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* *
5600 CCAATATGCTGATTCAAGGCCAGTGATATCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
5636 GAAGATGAATATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGTAA-GC
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACG-AAGGC
* * * * *
5700 GCCAATATGCTAATTCAAGGCCGGTGAAATCGGACTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * **
5737 AAAGATGAAGATGCTAATGTGCGGATTCAAGGCCAGCGACATTGGGGTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * ** * *
5802 TTAATATGTTGATTCAAGGCCAGCGATACCGAACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
5838 AAATATGAAGATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
5903 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
5939 AAAGATGAA-A-GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A--AAGG
1 AAAGATGAAGATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGG
* * *
5999 TGCCAATATGCTGATTCAAGGCGAGCGATATCGGACTT
64 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
6037 AAACATGAAGAAGCCCATGTGCTGATTCAA-GCCTGGCGACATTGGACATAAAGATGACGAAGGC
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCC-AGCGACATTGGACTTAAAGATGACGAAGGC
* * * * *
6101 GCCAATATGTTGATTCAACGCTAGCGATTTTGGATTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
6138 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* **
6203 CCAATATGCTGATTCAAGGCCAGTGATACCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
6239 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* **
6304 CCAATATGCTGATTCAAGGCTAGCGATACCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** **
6340 AAAGCTGAAGATGCCAATGTGCTGATTCAAGGCCAATGATGTTGGACTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* ** **
6405 CTAATATGCCAATTCAAGGCCAGCGATACCGGAC-T
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
6440 AAGAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTTAAAGACGGCGAAGGC
1 AA-AGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGC
* * * * *
6505 ACCAATATGCTGATTCTAGGCCAGTGATATAGGATTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
6542 GAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAAGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * * *
6607 CCAATATGCTAATTCAAGGCCGGTGAAATCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
6643 AAAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * * * ** * *
6708 TTAATATGTTGATTCAAGGCTAGCGCTACCGAACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** *
6744 -AAGTATGAAGATGCCAACGTGCTGATTCAAGGCCAATGACATTGGACTTAAAGATGACGAAGGT
1 AAAG-ATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGC
6808 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
65 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * *
6845 AAAGATGAA-A-GCACCAATGTGCTGATTCAAGGACAGTGATATCGGACTTGAAGAT---GAAGA
1 AAAGATGAAGATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGG
* * * *
6905 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTC
64 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * *
6943 AAAGTTGACGATAGCGCTAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGAT---GAAG
1 AAAGATGAAGAT-GC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
7005 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** * *
7044 AAAGATGATGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ACGAAG
1 AAAGATGAAG-ATGC--CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** ** *
7106 ATGCCAACGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
7145 AAAGATTACGAA-AGTGCCAATATCCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAA
1 AAAGA-T--GAAGA-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAA
* **
7209 GGTGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
7249 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * **
7314 CCAAAATGTTGATTCAAGGCCAGCGATACCGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** * * * * **
7350 AAAGATGAAGATGCCAATTTGCTGATTCAAGGCCAATGATATCGGATTTGAAGAT---GAAGATG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* *
7412 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * * * * ** *
7448 AAAGATGACGAAGGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAATTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
7510 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * *
7549 AAAGATTACGAAGGTGCCAATATGCTGAATCAA-GCTTAGCGATATCGGACTTCAAGATGAAGAA
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGC-CAGCGACATTGGACTTAAAGATGACGAA
* * * * * *
7613 ---GCCAATGTGCTGATTCAAGCCCGGTGACATTGGACAT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * ** * *
7650 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATTTTGGA-TTTAAG--GATGAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
7712 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * **
7751 AAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGAT---GAAG
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
7813 ATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** *
7852 AAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCCAACGATACCGGCCTTAAAGATGA-G--G
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
7914 ATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * **
7953 AAAGATGATGAAGGCGCTAATATGCCGAGTCAAGGCCAGCGATACCGGACTTAAAGAT---GAAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * *
8015 ATGCCAATGTGCTGATTCAAGGCTAGTGACATTGCACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * *
8054 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGAT---GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
8116 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * *
8155 AAAGATGATGAAAGCGCCAATATGCTAATTCAAGGCCTGTGAAATCGGACTTAAAGAT---GAAG
1 AAAGATGA--AGA-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
8217 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * **** * *
8256 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCAAACAT-AA-AT-ATGAAG
1 AAAGATGAAG-ATGC--CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** ** *
8318 ATGCCAACGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
8357 AAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * *
8419 GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** *
8458 AAAGATAAAGGTGCCAATATGCTGAATCAAGGCTAGCGATATCAGACTTAAAGATGAAGAA---G
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * * * * *
8520 CCAATGTGCTAATTCAAGCCCGGCAACATTGGACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * ** *
8556 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATTTTGGATTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
8618 ATGCCAATGTGCTGATTCAAGCCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * ** * * * **
8657 CAAGATTACAAAGGCGCCAATATGTTGATTCAAGGCCAGCGATACCGGACTTAAAGAT---GAAG
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * ** *
8719 ATGCCAATGTGCTGATTCAAGGCCAATGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * ***
8758 AAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCCAGCGATACCAGACTTAAAGAT--C-AAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
8820 ATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * *
8859 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGAT---GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
8921 ATGCCAATGTGCTGATTGAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * * *
8960 AAAGTTGACGAAAGCGCTAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGAT---GAAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
9022 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** * * *
9061 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAAG
1 AAAGATGAAG-ATGC--CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** ** * * *
9123 ATGCCAACGTGCTGATTCGAGGCCAGTGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * *
9162 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCTAGTGATATTGGACTTAAAGAT---GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
9224 ATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * ** *
9263 AAAGATGACGAAGGCGCTAATATGCTGATTCAAGGCCAGCGATACCGGCCTTAAAGATGA-G--G
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * * *
9325 ATGCTAATGTGCTGATTCAAAGCTAGTGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * ** *
9364 AAAGAAGACGAAGGCACCAATATGCTAATTCAAGGCCAGCGATTTTGGATTTAAAGA--A-GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * *
9426 ATGCCAATGTGCTGAGTCTAGGCCAGCGACATTAGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** ** * * * *
9465 AAAGATGACGAAGGCGCCAACATGGTGATTCAAGGCCAGCAATATTGGATTTAAAGAT-A--AAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * * * *
9527 GTGCCAATGTGTTGATTCAAGGCCAACGACATTGGACAT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * ** * * * * **
9566 AAAAATGAAGGTGCCAATATGCTGATTCAAGGCCAATGATATCGGACATGAAGAT---GAAGATG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* *
9628 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** *
9664 AAAGATGACGAAGGTGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAGTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
9726 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * * ** * * *
9765 AAAGATGACGAAGGA-GTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAA
1 AAAGAT---GAA-GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAA
** ** * *
9826 GATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
9866 AAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-
1 AAAGATG---AAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * *
9928 GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * * * * * *
9967 AAAGAAAAAGGTGCCAATATGCTAATTCAAGGCGAGCGATATCGGACTTAAAGATGAAGAA---G
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * *
10029 CCAATGTGCTGATTCAA-GCTCGGCGACATTGGACAT
66 CCAATATGCTGATTCAAGGC-CAGCGATATTGGACTT
* * * * ** *
10065 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGGTATTGGATTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
10127 ATGCCAATGTGCTGATTCAATGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * **** * * *
10166 AAAGATGACGAAGGCGTTAATATGTTGATTTAAGGCCAGCGATACCAAACAT-GA-AT-ATGAAG
1 AAAGATGAAG-ATGC--CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** ** * *
10228 ATGCCAACGTGTTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
10267 CAAGACGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-
1 -AA-A-GATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * * *
10329 GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACAT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * ** * *
10368 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATTTTGGA-TTTAAG--GATGAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
10430 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * **
10469 AAAGATTACGAA-AGTGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGAT---GAA
1 AAAGA-T--GAAGA-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAA
** * * *
10530 GATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * **
10570 AAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCCAGCGATACCGGACTTAAAGAT--C-AAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * **
10632 ATGCCAATGTGGTGATTCAAGGCTAGTGACGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * ** * * *
10671 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAATGATATCGGACTTGAAGAT---GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
10733 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * ** *
10772 AAAGATAACGAAGGTGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAGTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
10834 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
10873 AAAGATTACGAAGGTACCAATATGCTGATTCAAGGCCAGCGATACTGGACTTAAAGAT---GAAG
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
10935 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * * * ** * * *
10974 AAAGATGACGAAGGA-GTTAATATGTTGAGTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAA
1 AAAGAT---GAA-GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAA
** ** *
11035 GATGCCAACGTGCTGATTCAAGGCCAGCGACATTGGACTT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
11075 AAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * * *
11137 GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * **
11176 AAAGATAAAGGTGCCAATATGCTAATTCAAGGCGAGCGATATCGGACTTAAAGAT-A--AAGAAG
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
** * * * * *
11238 CCAAGGTGCTGATTCAAGCCCGGTGACATTGGACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * ** *
11274 AAAGATGACGAAGGTCCCAATATGTTGATTCAAGGCTAGCGGTATTGGATTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
11336 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * ** **
11375 AAAGATTACGAAGGTTCCAATATGTTGATTCAAGGCTAGCGGTACCGGACTTAAAGAT---GAAG
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * *
11437 ATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * **
11476 AAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCCAGCGATACCGGACTTAAAGAT---GAAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
11538 ATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * * * *
11577 AAAGATGACGAAGGCACCAATATGCTGATTCAAGACCAGTGATATCGGACTTGAAGATGAAG-AT
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * *
11641 GCG--AATGTGTTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * **
11678 AAAGATGACGAAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGACTTAAAGAT---GAAG
1 AAAGATGA--AGA-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * *
11740 ATGCTAATGTGCTGTTTCAAGGCCAGCGACATTGGGCTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
11779 AAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCGGCGATACTGGACTTAAAGAT---GAAG
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
11841 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * * ** * * *
11880 AAAGATGACGAAGGA-GTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAA
1 AAAGAT---GAA-GATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAA
** ** * * *
11941 GATGCCAACGTGTTGATTCATGGCCAGCGACATTGGACTT
62 GGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
11981 AAAGATGACGAAGGTGCCAATATGATGATTCAAGGCTAGCGATATTGGACTTAAAGATGA--AA-
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * *
12043 GCAG-CAATGTGCTGATTCAAGGCTAGCGACATTGGACTT
63 GC-GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * * ** *
12082 AAAGATAAAGGTGCCAATATGCTAATTCCAGGCGAGCGATATCAGACTTAAAGATGAAGAA---G
1 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
* * * * *
12144 CCAATGTGCTGATTCAAGCCCGGCGACATTGGACAT
66 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * ** *
12180 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGGTATTGGATTTAAAGAT---GAAG
1 AAAGAT---GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * *
12242 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * * **
12281 AAAGATTACGAAGGTTCCAATATGTTGATTCAAGGCTAGCGATACCGGACTTAAAGAT---GAAG
1 AAAGA-T--GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * *
12343 ATGCCAATGTGTTGATTCAAGGCCAACGATGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * ***
12382 AAAGATGACGAAGGCACTAATATGCTGATTCAAGGCCAGCGATACCAGACTTAAAGAT--C-AAG
1 AAAGATGAAG-ATGC-C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
** * * * * * **
12444 ATGCCAATGTGGTGATACAAGGCTAGTGACGTTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * ** * * *
12483 AAAGATGACGAAGGCACCAATATGCTAATTCAAGGCCAATGATATCGGACTTGAAGAT---GAAG
1 AAAGATGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAG
* * *
12545 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
63 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
12584 AA
1 AA
12586 TTATGTCCGA
Statistics
Matches: 10575, Mismatches: 1549, Indels: 712
0.82 0.12 0.06
Matches are distributed among these distances:
97 12 0.00
98 1265 0.12
99 87 0.01
100 137 0.01
101 8827 0.83
102 113 0.01
103 52 0.00
104 82 0.01
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (101 bp):
AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGCG
CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:678 original size:202 final size:197
Alignment explanation
Indices: 6--12585 Score: 10526
Period size: 202 Copynumber: 62.5 Consensus size: 197
1 TCATA
* * * * * *
6 AAAGATG-AGATGCCAAT-TGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGATGAAGGCA
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATG--
* * * * * * *
69 CCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGATGAAGATGCTAATGTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * ** ** * * * *
134 AGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATAC
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
* * *
199 CGAACAT
191 TGGACTT
* * ** **
206 AAATATGAAGACGCCAACGTGCTGATTCAAGGCCAGCGACT-TTGGACTTAAAGATGTCGAAGGT
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTAAAGA--T-GAAAAT
* * * * * *
270 GCTAATATGCTGATTCAAGGACGGCGATATTGGACTTAAAGATGAA-A-GCACCAATGTGCTGAT
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATG--CCAATATGCTGAT
* * * * * * *
333 TCAAGGCTAGCGACATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCGAGCAATA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
397 TCGGACTT
190 TTGGACTT
* * * * * * * *
405 AAACATGAAGAAGCCCATGTGCTGATTCAAGCCCGGCG-TCATTGGACATAAAGATGACGAAGGT
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGAT-ATTGGACTTAAAGATGA--AA-AT
* * * ** * *
469 GCCAATATGTTGATTCAAGGCTAGCGATTTTGGATTTAAAGATGAAGATGCCAATGTGCTGATTC
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* * * *
534 AAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
127 AAGGCCAGCGATATTGGACTTAAAGA-TA-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
***
599 CCAGACTT
190 TTGGACTT
* * * * * * *
607 AAAGATCAAAATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTTAAAGATGACAAAGGCA
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATG--
* ** * * * *
672 CCAATATGCTGATTCAAGGCCAATGATATCGGACTTGAAGATGAAGATGCCAATGTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * * * * *
737 AGGCCAGCGACATTGGACTTAAAGTTGACGAA-A-GCGCTAATATGCTAAATCAAGGCCGGTGAA
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGC-C-AATGTGCTGATTCAAGGCCAGCGAC
*
800 ATCGGACTT
189 ATTGGACTT
* * * * * * *
809 ACAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATGC-
* * * * ** * * **
874 TTAATATGTTGATTCAAGGCCAGCGATA-CCGATCATAAATATGAAGATGCCAACGTGCTGATTC
64 -CAATGTGCTGATTCAAGGCCAGCGACATTGGA-CTTAAAGATGAAGATGCCAATATGCTGATTC
* * * * * *
938 AAGGCCAGCAACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCGGCGATA
127 AAGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
1003 TTGGACTT
190 TTGGACTT
* * * * * *
1011 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATGC-
* * * ** *
1076 CTAATATGGC-GAGTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTC
64 C-AATGT-GCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* * * * * *** * * *
1140 AAGGCTAGTGACACTGCACTTAAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATA
127 AAGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
1205 TCGGACTT
190 TTGGACTT
* * * *
1213 GAAGATGAAGATGCCATTATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAAGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AAA-TG
* * * * * ** * *
1278 CCAATATGCTAATTCAAGGCCGGTGAAATCAGACTTAAAGATGAAGATGCTAATGTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * ** ** * * * *
1343 AGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATAC
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
* * *
1408 CGAACAT
191 TGGACTT
* ** * *
1415 AAATATGAAGATGCCAACGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-ATG
* * *
1480 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-A-GCACCAATGTGCTGATT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATG--CCAATATGCTGATT
* * * * * *
1543 CAAGGCTAGCGACATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCGAGCGATAT
126 CAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
*
1607 CGGACTT
191 TGGACTT
* * * * * * *
1614 AAAGATGAAGAAGCCAATGTGCTGATTCAAGCCCGGCGACATTGGACATAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-ATG
* * * * * * *
1679 CCAATATGTTGATTCAAGGCTAGCGATATTGGATTTAAAGATGAAGATGCCAATGTGCCGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * * *
1744 AGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGTGATAC
128 AGGCCAGCGATATTGGACTTAAAGA-TA-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
*
1809 CGGACTT
191 TGGACTT
* * * * * *
1816 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGAAGACGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATGC-
* ** * ** *
1881 CTAATATGCCAATTCAAGGCCAGCGATACCGGAC-TAAGAGATGAAGATGCCAATGTGCTGATTC
64 C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA-AGATGAAGATGCCAATATGCTGATTC
* * * * *
1945 AAGGCGAGCGATATCGGACTTAAAGAT-GAAGAAGCCAATGTGCTGATTCAAGCCCGGCGACATT
127 AAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT
2009 GGACTT
192 GGACTT
* * * * * * *
2015 AAAGAAGACGAAGGCACCAATATGCTAATTCAAGGCCAGCGATTTTGGATTTAAAGATGAAGATG
1 AAAGATGAAG-ATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * ** *
2080 CTAATGTGCTGAGTCTAA-GCCAGCGACATTAGACTTAAAGATGACGAAGGCGCCAACATGCTGA
63 CCAATGTGCTGATTC-AAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGA
* * * *
2144 TTCAAGGCCAGCAATATTGGATTTAAAGATA-AAGGTGCCAATGTGCTGATTCAAGGCCAACGAC
124 TTCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
*
2208 ATTGGACAT
189 ATTGGACTT
* ** * * * * *
2217 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAATGATATCGAACATGAAGATGAAGATGCCA
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATGCCA
* * **
2282 ATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAAATGACGAAGGCGCCAATATGCTGATTCA
66 ATGTGCTGATTCAAGGCCAGCGACATTGGACTT--AAA-GATGAAGATGCCAATATGCTGATTCA
* * * **
2347 AGGCCAGTGATATTGGACTTAAAGAT-GAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTG
128 AGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTG
2411 GACTT
193 GACTT
* * * * ** *
2416 AAAGATGATGAAGGCGCTAATATGCCGAGTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATG
1 AAAGATGAAG-ATGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * * *
2481 CCAATGTGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGACGAAGGCACCAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATG--CCAATATGCTGAT
* * * *
2546 TCAAGGCCAGTGATATCGGACTTGAAGAT-GAATATGCCAATGTGCTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
2610 TTGGACTT
190 TTGGACTT
* * * * * * * *
2618 AAAGATGATGTAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGATGAAGATG
1 AAAGATGAAG--A-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * ** * * * *
2683 CTAATGTGCGGATTCAAGGCCAGCGACATTGGGGTTAAAGATGACGAAGGCGTTAATATGTTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC--CAATATGCTGAT
** * * * * *
2748 TCAAGGCCAGCGATACCGAACATAAATAT-GAAGATGCCAACGTGCTGATTCAAGGCCAACGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
2812 TTGGACTT
190 TTGGACTT
* * ***
2820 AAAGATGACGAAGGTGCCAATATGCTGACTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGCA
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * *
2885 CCAATGTGCTGATTCAAGGCTAGCGACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * * *
2950 AGGCGAGCGATATCGGACTTAAACAT-GAAGAAGCCCATGTGCTGATTCAA-GCCTGGCGACATT
128 AGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCC-AGCGACATT
*
3013 GGACAT
192 GGACTT
* * * * * *
3019 AAAGATGACGAAGGTGCCAATATGTTGATTCAACGCTAGCGATTTTGGA-TTAAAAGATGAAGAT
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAAAT
* *
3083 GCCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGA
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGA
* * * *
3148 TTCAAGGCCGGCGATATTGGACTTAAAGAT-GAAGGTGCCAATGTGCTGATTCAAGGCCAACGAT
124 TTCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
*
3212 GTTGGACTT
189 ATTGGACTT
* * * ** *
3221 AAAGATGATGAAGGCGCTAATATGGC-GAGTCAAGGCCAGCGATACCGGACTTAAAGATGAAGAT
1 AAAGATGAAG-ATGC-C-AATAT-GCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAT
* * * * * *
3285 GCCAATGTGCTGATTCAAGGCTAGTGACACTGCACTTAAAGATGACGAAGGCACCAATATGCTGA
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATG--CCAATATGCTGA
* * * * *
3350 TTCAAGGCCAGTGATATCGGACTTGAAGAT-GAAGATGCCATTATGCTGATTCAAGGCCAGCGAC
124 TTCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
3414 ATTGGACTT
189 ATTGGACTT
* * * * * * ** * *
3423 AAAGATGATGAAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAGTTAAAGATGAAGATG
1 AAAGATGA--AGA-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * * * *
3488 CTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC--CAATATGCTGAT
** * * * * *
3553 TCAAGGCCAGCGATACCGAACATAAATAT-GAAGATGCCAACGTGCTGATTCAAGGCCAGCGACT
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
3617 TTGGACTT
190 TTGGACTT
* ***
3625 AAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGCA
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * *
3690 CCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * *
3755 AGGCGAGCGATATCGGACTTAAAGAT-GAAGAAGCCAATGTGCTGATTCAAGCCCGGCGACATTG
128 AGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTG
*
3819 GACAT
193 GACTT
* * * * *
3824 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATATTGGATTTAAAGATGAAGATG
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
*
3889 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGATGCCAATATGCTGAT
** * **
3954 TCAAGGCCAGCGATACCGGACTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAACGATG
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
4018 TTGGACTT
190 TTGGACTT
* * ** ** *
4026 AAAGATGACGAAGGCGCTAATATGCCAATTCAAGGCCAGCGATACCGGAC-TAAGAGATGAAGAT
1 AAAGATGAAG-ATGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTTAA-AGATGAAAAT
* * * * *
4090 GCCAATGTGCTGATTCAAGGCGAGCGATATCGGACTTAAAGATGAAGAAGCCAATGTGCTGATTC
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* * * * * * * *
4155 AAGCCCGGCGACATTGGACTTAAAGA-AGACGAAGGCACCAATATGCTAATTCAAGGCCAGCGAT
127 AAGGCCAGCGATATTGGACTTAAAGATAGAAG-ATG--CCAATGTGCTGATTCAAGGCCAGCGAC
* *
4219 TTTGGATTT
189 ATTGGACTT
* * * * **
4228 AAAGATGAAGATGCCAATGTGCTGAGTCTAA-GCCAGCGACATTAGACTTAAAGATGACGAAGGC
1 AAAGATGAAGATGCCAATATGCTGATTC-AAGGCCAGCGATATTGGACTTAAAGATGA--AA-AT
** * * * * * *
4292 GCCAACATGCTGATTCAAGGCCAGCAATATTGGATTTAAAGATAAAGGTGCCAATGTGCTGATTC
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* * * * * ** * *
4357 AAGGCCAACGACATTGGACATAAAGAT-GAAGGTGCCAATATGCTGATTCAAGGCCAATGATATC
127 AAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT
* *
4421 GAACAT
192 GGACTT
* * * * * **
4427 GAAGATGAAGATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAAATGACGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-ATG
* * * * *
4492 CCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * ** * * * * * *
4557 AGGCCAACGATGTTGGACTTAAAGATGATGAAGGCGCTAATATGCCGAGTCAAGGCCAGCGATAC
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
*
4622 CGGACTT
191 TGGACTT
* * * * * * *
4629 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGACGAAGGCA
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATG--
* * * * * * *
4694 CCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGATGAATATGCCAATGTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * * * *
4759 AGGCCAGCGACATTGGACTTAAAGATGATGTAAG-CGCCAATATGCTAATTCAAGGCCGGTGAAA
128 AGGCCAGCGATATTGGACTTAAAGAT-A-G-AAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
4823 TCGGACTT
190 TTGGACTT
* * * * ** * *
4831 AAAGATGAAGATGCTAATGTGCGGATTCAAGGCCAGCGACATTGGGGTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATGC-
* * * * ** * * * **
4896 TTAATATGTTGATTCAAGGCCAGCGATACCGAACATAAATATGAAGATGCCAACGTGCTGATTCA
64 -CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * * *
4961 AGGCCAACGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGACTCAAGGCCAGCGATAT
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
5026 TGGACTT
191 TGGACTT
* * * *
5033 AAAGATGAA-A-GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-AAAGGTG
1 AAAGATGAAGATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAA-ATG
* * * * * * * *
5095 CCAATATGCTGATTCAAGGCGAGCGATATCGGACTTAAACATGAAGAAGCCCATGTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * ** * * * * **
5160 A-GCCTGGCGACATTGGACATAAAGATGACGAAGGCGCCAATATGTTGATTCAACGCTAGCGATT
128 AGGCC-AGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
5224 TTGGATTT
190 TTGGACTT
* * **
5232 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-T--GAAAATG
* ** * * * * * * *
5297 CCAATATGCTGATTCAAGGCCAATGATATCGAACATGAAGATGAAGATGCCAATGTGCTAATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * ** * * *
5362 AGGCCAGCGACATTGGACTTAAAAATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGTGATAT
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
5427 TGGACTT
191 TGGACTT
* * * * * *
5434 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATGC-
* * * * ** *
5499 CTAATATGCCGAGTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCA
64 C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * *** * * *
5564 AGGCTAGTGACATTGCACTTAAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATAT
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
*
5629 CGGACTT
191 TGGACTT
* * * * **
5636 GAAGATGAATATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGTAAGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA---AAATG
* * * * * * * * *
5701 CCAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGATGAAGATGCTAATGTGCGGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* ** ** ** * * * *
5766 AGGCCAGCGACATTGGGGTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATAC
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
* * *
5831 CGAACAT
191 TGGACTT
* ** * * *
5838 AAATATGAAGATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-ATG
* * *
5903 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-A-GCACCAATGTGCTGATT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATG--CCAATATGCTGATT
* * * * * *
5966 CAAGGCTAGCGACATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCAAGGCGAGCGATAT
126 CAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
*
6030 CGGACTT
191 TGGACTT
* * * * * * * **
6037 AAACATGAAGAAGCCCATGTGCTGATTCAA-GCCTGGCGACATTGGACATAAAGATGACGAAGGC
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCC-AGCGATATTGGACTTAAAGATGA--AA-AT
* * * * ** * *
6101 GCCAATATGTTGATTCAACGCTAGCGATTTTGGATTTAAAGATGAAGATGCCAATGTGCTGATTC
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* * * * *
6166 AAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGTGATA
127 AAGGCCAGCGATATTGGACTTAAAGA-TA-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
**
6231 CCGGACTT
190 TTGGACTT
* * **
6239 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-T--GAAAATG
* * * ** * *
6304 CCAATATGCTGATTCAAGGCTAGCGATACCGGACTTAAAGCTGAAGATGCCAATGTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
** * ** * * ** * *
6369 AGGCCAATGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCAATTCAAGGCCAGCGATAC
128 AGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
*
6434 CGGAC-T
191 TGGACTT
* * * * * ** *
6440 AAGAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTTAAAGACGGCGAAGGC
1 AA-AGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-TGAAAATG-
* * * * * * * *
6505 ACCAATATGCTGATTCTAGGCCAGTGATATAGGATTTGAAGATGAAGATGCCAATGTGCTGATTC
63 -CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* * * * * * *
6570 AAGGCCAGCGACATTGGACTTAAAGATGATGAA-AGCGCCAATATGCTAATTCAAGGCCGGTGAA
127 AAGGCCAGCGATATTGGACTTAAAGAT-A-GAAGA-TGCCAATGTGCTGATTCAAGGCCAGCGAC
*
6634 ATCGGACTT
189 ATTGGACTT
* * * * * *
6643 AAAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AAATGC-
* * * * ** * * **
6708 TTAATATGTTGATTCAAGGCTAGCG-CTACCGAACAT-AAGTATGAAGATGCCAACGTGCTGATT
64 -CAATGTGCTGATTCAAGGCCAGCGAC-ATTGGACTTAAAG-ATGAAGATGCCAATATGCTGATT
** * * * *
6771 CAAGGCCAATGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
126 CAAGGCCAGCGATATTGGACTTAAAGAT-A-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
6836 ATTGGACTT
189 ATTGGACTT
* * * * * *
6845 AAAGATGAA-A-GCACCAATGTGCTGATTCAAGGACAGTGATATCGGACTTGAAGATGAAGATGC
1 AAAGATGAAGATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATGC
* * * *
6908 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTCAAAGTTGACGATAGCGCTAATATGCTAATT
64 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGAT-GC-C-AATATGCTGATT
* * * * *
6973 CAAGGCCGGTGAAATCGGACTTAAAGAT-GAAGATGCTAATGTGCTGATTCAAGGCCAGCGACAT
126 CAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACAT
*
7037 TGGGCTT
191 TGGACTT
* * * * ** * * * * *
7044 AAAGATGATGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACATAAATACGAAGATG
1 AAAGATGAAG-ATGC--CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* *
7109 CCAACGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAA-AGTGCCAATATCCTGA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGA-TGCCAATATGCTGA
* * *
7173 TTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGCG
124 TTCAAGGCCAGCGATATTGGACTTAAAGA-TA-GAAGATGCCAATGTGCTGATTCAAGGCCAGCG
* **
7238 ATACCGGACTT
187 ACATTGGACTT
* * **
7249 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-T--GAAAATG
** * * ** *
7314 CCAAAATGTTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATTTGCTGATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
** * * *
7379 AGGCCAATGATATCGGATTTGAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTG
128 AGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTG
7443 GACTT
193 GACTT
** * * * * ** * *
7448 AAAGATGACGAAGGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAATTAAAGATGAAGATG
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * *
7513 CTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATTACGAAGGTGCCAATATGCTGAA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGATGCCAATATGCTGAT
* * * * * * *
7578 TCAA-GCTTAGCGATATCGGACTTCAAGAT-GAAGAAGCCAATGTGCTGATTCAAGCCCGGTGAC
125 TCAAGGC-CAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
*
7641 ATTGGACAT
189 ATTGGACTT
* * * * * * *
7650 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATTTTGGATTTAAGGATGAAGATG
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
*
7715 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGATGCCAATATGCTGAT
** * **
7780 TCAAGGCCAGCGATACCGGACTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAACGATG
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
7844 TTGGACTT
190 TTGGACTT
* * * * ** * **
7852 AAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCCAACGATACCGGCCTTAAAGATGAGGATG
1 AAAGATGAAG-ATGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* ** * * * *
7917 CCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCGCTAATATGCCGAG
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC-C-AATATGCTGAT
** * *
7982 TCAAGGCCAGCGATACCGGACTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCTAGTGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
8046 TTGCACTT
190 TTGGACTT
* * * * * *
8054 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGATGAAGATG
1 AAAGATGAAG-ATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * *
8119 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAAGCGCCAATATGCTAAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA--AGA-TGCCAATATGCTGAT
* * * * *
8184 TCAAGGCCTGTGAAATCGGACTTAAAGAT-GAAGATGCTAATGTGCTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
8248 TTGGGCTT
190 TTGGACTT
* * * * **** * * *
8256 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCAAACATAAATATGAAGATG
1 AAAGATGAAG-ATGC--CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* *
8321 CCAACGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGAT
*
8386 TCAAGGCCAGCGATATTGGACTTAAAGAT-GAA-A-GCACCAATGTGCTGATTCAAGGCTAGCGA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATG--CCAATGTGCTGATTCAAGGCCAGCGA
8448 CATTGGACTT
188 CATTGGACTT
* * * * **
8458 AAAGATAAAGGTGCCAATATGCTGAATCAAGGCTAGCGATATCAGACTTAAAGATGAAGAA-GCC
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-AATGCC
* * * * * * *
8522 AATGTGCTAATTCAAGCCCGGCAACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGATTC
65 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGATTC
* * * *
8587 AAGGCTAGCGATTTTGGATTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGCCCAGCGACATT
127 AAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT
8651 GGACTT
192 GGACTT
* * ** * ** *
8657 CAAGATTACAAAGGCGCCAATATGTTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATG
1 AAAGA-T--GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
** ** * * *
8722 CCAATGTGCTGATTCAAGGCCAATGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC-C-AATATGCTGAT
*** * * *
8787 TCAAGGCCAGCGATACCAGACTTAAAGAT-CAAGATGCCAATGTGCTGATTCAAGGCTAGTGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
8851 TTGGACTT
190 TTGGACTT
* * * * * *
8859 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGATGAAGATG
1 AAAGATGAAG-ATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * * *
8924 CCAATGTGCTGATTGAAGGCCAGCGACATTGGACTTAAAGTTGACGAAAGCGCTAATATGCTAAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC-C-AATATGCTGAT
* * * * *
8989 TCAAGGCCGGTGAAATCGGACTTAAAGAT-GAAGATGCTAATGTGCTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
9053 TTGGGCTT
190 TTGGACTT
* * * * ** * * * *
9061 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACATAAATATGAAGATG
1 AAAGATGAAG-ATGC--CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * * *
9126 CCAACGTGCTGATTCGAGGCCAGTGACATTGGACTTAAAGATGACGAAGGCACCAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATG--CCAATATGCTGAT
* * * **
9191 TCAAGGCTAGTGATATTGGACTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAACGATG
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
9255 TTGGACTT
190 TTGGACTT
* * ** * **
9263 AAAGATGACGAAGGCGCTAATATGCTGATTCAAGGCCAGCGATACCGGCCTTAAAGATGAGGATG
1 AAAGATGAAG-ATGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * * * * * *
9328 CTAATGTGCTGATTCAAAGCTAGTGACATTGGACTTAAAGAAGACGAAGGCACCAATATGCTAAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATG--CCAATATGCTGAT
* * * *
9393 TCAAGGCCAGCGATTTTGGATTTAAAGA-AGAAGATGCCAATGTGCTGAGTCTAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
9457 TTAGACTT
190 TTGGACTT
** * * * * *
9465 AAAGATGACGAAGGCGCCAACATGGTGATTCAAGGCCAGCAATATTGGATTTAAAGAT-AAAGGT
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAA-AT
* * * * *
9529 GCCAATGTGTTGATTCAAGGCCAACGACATTGGACATAAAAATGAAGGTGCCAATATGCTGATTC
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
** * * *
9594 AAGGCCAATGATATCGGACATGAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT
127 AAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT
9658 GGACTT
192 GGACTT
* * * * * ** * *
9664 AAAGATGACGAAGGTGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAGTTAAAGATGAAGATG
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * ** *
9729 CTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGA-GTTAATATGTTGA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAA-GATGCCAATATGCTGA
** * * * * *
9793 TTCAAGGCCAGCGATACCGAACATAAATAT-GAAGATGCCAACGTGCTGATTCAAGGCCAACGAC
124 TTCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
9857 ATTGGACTT
189 ATTGGACTT
* ***
9866 AAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGCA
1 AAAGATG---AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* ** * *
9931 CCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAAAAAGGTGCCAATATGCTAATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * *
9996 AGGCGAGCGATATCGGACTTAAAGAT-GAAGAAGCCAATGTGCTGATTCAA-GCTCGGCGACATT
128 AGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGC-CAGCGACATT
*
10059 GGACAT
192 GGACTT
* * * * * *
10065 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGGTATTGGATTTAAAGATGAAGATG
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * * * *
10130 CCAATGTGCTGATTCAATGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC--CAATATGCTGAT
* **** * * * * *
10195 TTAAGGCCAGCGATACCAAACATGAATAT-GAAGATGCCAACGTGTTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
10259 TTGGACTT
190 TTGGACTT
* * ***
10267 CAAGACGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGCA
1 -AA-A-GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * *
10332 CCAATGTGCTGATTCAAGGCTAGCGACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGAT
* * * *
10397 TCAAGGCTAGCGATTTTGGATTTAAGGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
10461 TTGGACTT
190 TTGGACTT
** *
10469 AAAGATTACGAA-AGTGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGAT
1 AAAGA-T--GAAGA-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAT
* ** * * *
10533 GCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCGA
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC-C-AATATGCTGA
** * * * *
10598 TTCAAGGCCAGCGATACCGGACTTAAAGAT-CAAGATGCCAATGTGGTGATTCAAGGCTAGTGAC
124 TTCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
*
10662 GTTGGACTT
189 ATTGGACTT
* * ** * * *
10671 AAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAATGATATCGGACTTGAAGATGAAGATG
1 AAAGATGAAG-ATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* *
10736 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAACGAAGGTGCCAATATGCTAAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGAT
* * * ** * *
10801 TCAAGGCCGGTGAAATCAGAGTTAAAGAT-GAAGATGCTAATGTGCTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
*
10865 TTGGGCTT
190 TTGGACTT
* * * *
10873 AAAGATTACGAAGGTACCAATATGCTGATTCAAGGCCAGCGATACTGGACTTAAAGATGAAGATG
1 AAAGA-T--GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
** *
10938 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGA-GTTAATATGTTGA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAA-GATGCCAATATGCTGA
* ** * * * *
11002 GTCAAGGCCAGCGATACCGAACATAAATAT-GAAGATGCCAACGTGCTGATTCAAGGCCAGCGAC
124 TTCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGAC
11066 ATTGGACTT
189 ATTGGACTT
* ***
11075 AAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAGCA
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * *
11140 CCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTAATTCA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * * * * * *
11205 AGGCGAGCGATATCGGACTTAAAGATA-AAGAAGCCAAGGTGCTGATTCAAGCCCGGTGACATTG
128 AGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTG
*
11269 GACAT
193 GACTT
* * * * * * *
11274 AAAGATGACGAAGGTCCCAATATGTTGATTCAAGGCTAGCGGTATTGGATTTAAAGATGAAGATG
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * *
11339 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTTCCAATATGTTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGATGCCAATATGCTGAT
* * ** * **
11404 TCAAGGCTAGCGGTACCGGACTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAACGATG
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
11468 TTGGACTT
190 TTGGACTT
* * * ** *
11476 AAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATG
1 AAAGATGAAG-ATGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * *
11541 CCAATGTGCTGATTCAAGGCTAGTGACATTGGACTTAAAGATGACGAAGGCACCAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATG--CCAATATGCTGAT
* * * * * *
11606 TCAAGACCAGTGATATCGGACTTGAAGAT-GAAGATGCGAATGTGTTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
11670 TTGGACTT
190 TTGGACTT
* * * * * * ** *
11678 AAAGATGACGAAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGACTTAAAGATGAAGATG
1 AAAGATGA--AGA-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * * *
11743 CTAATGTGCTGTTTCAAGGCCAGCGACATTGGGCTTAAAGATTACGAAGGTGCCAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGATGCCAATATGCTGAT
* *
11808 TCAAGGCCGGCGATACTGGACTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
11872 TTGGACTT
190 TTGGACTT
** * ** * * * *
11880 AAAGATGACGAAGGA-GTTAATATGTTGATTCAAGGCCAGCGATACCGAACATAAATATGAAGAT
1 AAAGAT---GAA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAAT
* * * * *
11944 GCCAACGTGTTGATTCATGGCCAGCGACATTGGACTTAAAGATGACGAAGGTGCCAATATGATGA
62 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGA
* *
12009 TTCAAGGCTAGCGATATTGGACTTAAAGAT-GAA-A-GCAGCAATGTGCTGATTCAAGGCTAGCG
124 TTCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGC--CAATGTGCTGATTCAAGGCCAGCG
12071 ACATTGGACTT
187 ACATTGGACTT
* * * * * **
12082 AAAGATAAAGGTGCCAATATGCTAATTCCAGGCGAGCGATATCAGACTTAAAGATGAAGAA-GCC
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-AATGCC
* * * * *
12146 AATGTGCTGATTCAAGCCCGGCGACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGATTC
65 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGATTC
* * *
12211 AAGGCTAGCGGTATTGGATTTAAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT
127 AAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT
12275 GGACTT
192 GGACTT
* * * * ** *
12281 AAAGATTACGAAGGTTCCAATATGTTGATTCAAGGCTAGCGATACCGGACTTAAAGATGAAGATG
1 AAAGA-T--GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
* * ** * *
12346 CCAATGTGTTGATTCAAGGCCAACGATGTTGGACTTAAAGATGACGAAGGCACTAATATGCTGAT
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC-C-AATATGCTGAT
*** * * * * * *
12411 TCAAGGCCAGCGATACCAGACTTAAAGAT-CAAGATGCCAATGTGGTGATACAAGGCTAGTGACG
125 TCAAGGCCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACA
12475 TTGGACTT
190 TTGGACTT
* * * ** * * **
12483 AAAGATGACGAAGGCACCAATATGCTAATTCAAGGCCAATGATATCGGACTTGAAGATGAAGGTG
1 AAAGATGAAG-ATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATG
12548 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA
63 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA
12586 TTATGTCCGA
Statistics
Matches: 10376, Mismatches: 1686, Indels: 634
0.82 0.13 0.05
Matches are distributed among these distances:
196 2 0.00
197 2 0.00
198 21 0.00
199 2477 0.24
200 103 0.01
201 115 0.01
202 7440 0.72
203 61 0.01
204 36 0.00
205 119 0.01
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (197 bp):
AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAAATGCCA
ATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGG
CCAGCGATATTGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGAC
TT
Found at i:1777 original size:906 final size:895
Alignment explanation
Indices: 6--12585 Score: 11100
Period size: 906 Copynumber: 13.9 Consensus size: 895
1 TCATA
* * * * **
6 AAAGATG-AGATGCCAAT-TGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGATGAAGGCA
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* * * * * * *
69 CCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGATGAAGATGCTAATGTGCTGATTCA
66 CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* * * ** * * * *
134 AGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATAC
131 AGGCCAGCGATATTGGACTTAAAGATGAAGAAGGC-CCAATGTGCTGATTCAAGGCCAGCGACAT
* * * * * ** *
199 CGAACATAAATATGAAGACGCCAACGTGCTGATTCAAGGCCAGCGACT-TTGGACTTAAAGATGT
195 TGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTAAAGATGA
* * * * * * * * ** *
263 CGAAGGTGCTAATATGCTGATTCAAGGACGGCGATATTGGACTTAAAGATGAAAGCACCAATGTG
259 AGAA-G-CCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATG
* * * * * *
328 CTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A-AAGGTGCCAATATGCTGATTCAAGGCGA
322 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAAGCGCCAATGTGCTGATTCAAGGCCA
* * * * * ** * * * * *
391 GCAATATCGGACTTAAACAT-GAAGAAGCCCATGTGCTGATTCAAGCCCGGCG-TCATTGGACAT
387 GCGACATTGGACATAAAGATAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT-ATTGGACTT
* * * * ** * *
454 AAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATTTTGGATTTAAAGATGAAGATG
451 AAAGATGAAG-A-G-GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAAGATG
* * * * *
519 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGAT
513 CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGA-T--GAAGATGCCAATGTGCTGAT
*** * ** * * * *
584 TCAAGGCCAGCGATACCAGACTTAAAGATCA-AA-ATGCCAATGTGCTGATTCAAGGCTAGTGAC
575 TCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGCGCCAATATGCTGATTCAAGGCCAGCGAT
* * * * ** * * *
647 ATTGGACTTAAAGATGACAA-AGGCACCAATATGCTGATTCAAGGCCAATGATATCGGACTTGAA
640 ATCGGACTTAAAGAT-A-AAGATG--CCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAA
* * * * *
711 GATGAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGTTGACGAA-A-GCG
701 GATGAAGAAGGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGAT-A-GAAGATGC-
* * * * * * * * * *
773 CTAATATGCTAAATCAAGGCCGGTGAAATCGGACTTACAGATGAAGATGCTAATGTGCTGATTCA
763 C-AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCA
* * ** * * *
838 AGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATAC
827 AGGCCAGCGACATTGGACTTAAAGAT-A-GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATAT
* *
903 CGATCAT
890 GGA-CTT
* ** * * *
910 AAATATGAAGATGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* * *
975 CCAATATGCTGATTCAAGGCCGGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCA
66 CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* * * * * * *
1040 AGGCCAACGATGTTGGACTTAAAGATGATGAAGGCGCTAATATGGC-GAGTCAAGGCCAGCGATA
131 AGGCCAGCGATATTGGACTTAAAGATGAAGAAGGC-CCAATGT-GCTGATTCAAGGCCAGCGACA
** * * * * * *
1104 CCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACACTGCACTTAAAGATGA
194 TTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* * * * * * * *
1169 CGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGATGAAGATGCCATTATG
259 AGAA-GC-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATG
* * *
1234 CTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAAGCGCCAATATGCTAATTCAAGGCC
322 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAAGCGCCAATGTGCTGATTCAAGGCC
* * * ** * * * * * *
1299 GGTGAAATCAGACTTAAAGAT-GAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
386 AGCGACATTGGACATAAAGATAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * * ** * *
1363 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACATAAATATGAAGATG
451 AAAGATGAAG-AGGC--CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAAGATG
** * * * *
1428 CCAACGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGAT
513 CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGAT---GAAGATGCCAATGTGCTGAT
* * * *
1493 TCAAGGCCAGCGATATTGGACTTAAAGATGA-AA-GCACCAATGTGCTGATTCAAGGCTAGCGAC
575 TCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGCGCCAATATGCTGATTCAAGGCCAGCGAT
* * * * * *
1556 ATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCGAGCGATATCGGACTTAAAGATG
640 ATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATG
* * * * * * * *
1621 AAGAA-GCCAATGTGCTGATTCAAGCCCGGCGACATTGGACATAAAGATGACGAAGGTGCCAATA
705 AAGAAGGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGAT-A-GAAGATGCCAATG
* * * * * *
1685 TGTTGATTCAAGGCTAGCGATATTGGATTTAAAGATGAAGATGCCAATGTGCCGATTCAAGGCCA
768 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCA
* * *
1750 GCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGTGATACCGGACT
833 GCGACATTGGACTTAAAGA-TA-GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA-TGGACT
1815 T
895 T
* * * * * *
1816 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGAAGACGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* ** * ** * *
1881 CTAATATGCCAATTCAAGGCCAGCGATACCGGAC-TAAGAGATGAAGATGCCAATGTGCTGATTC
66 CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAA-AGATGAAGGTGCCAATATGCTGATTC
* * * *
1945 AAGGCGAGCGATATCGGACTTAAAGATGAAGAA-G-CCAATGTGCTGATTCAAGCCCGGCGACAT
130 AAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGCGACAT
* * * * * *
2008 TGGACTTAAAGAAGACGAAGGCACCAATATGCTAATTCAAGGCCAGCGATTTTGGATTTAAAGAT
195 TGGACTTAAAGATGAAG-ATG--CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT
* * * * *
2073 GAAGATG-CTAATGTGCTGAGTCTAA-GCCAGCGACATTAGACTTAAAGATGACGAAGGCGCCAA
257 GAAGAAGCCCAATGTGCTGATTC-AAGGCCAGCGACATTGGACTTAAAGAT---GAAGGTGCCAA
* * * * *
2136 CATGCTGATTCAAGGCCAGCAATATTGGATTTAAAGAT-A-AAGGTGCCAATGTGCTGATTCAAG
318 TATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAAGCGCCAATGTGCTGATTCAAG
* ** * *
2199 GCCAACGACATTGGACATAAAGAT-GAAGGTGCCAATATGCTGATTCAAGGCCAATGATATCGAA
383 GCCAGCGACATTGGACATAAAGATAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* * * * *
2263 CATGAAGATGAAGATGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAAATGACGAAG
448 CTTAAAGATGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--AAAT-ATGAAG
** * * *
2328 GCGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAT
510 ATGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGCTGAT
* * * * *
2393 TCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCGCTAATATGCCGAGTCAAGGCCAGCGA
575 TCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAGGCCAGCGA
* * * *
2458 TACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGCACTTAAAGAT
639 TATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT
* * * *
2523 GACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGAT-GAATATGCCAAT
704 GAAGAAGG--CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATGCCAAT
* * *
2587 GTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGTAAGCGCCAATATGCTAATTCAAG
767 GTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG--A-TGCCAATATGCTGATTCAAG
* * * * * * * * *
2652 GCCGGTGAAATCGGACTTAAAGAT-GAAGATGCTAATGTGCGGATTCAAGGCCAGCGACATTGGG
829 GCCAGCGACATTGGACTTAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA-TGGA
*
2716 GTT
893 CTT
* * * * ** * *
2719 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAAG
1 AAAGATGAAG-ATGC--CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAG
* ** *
2781 ATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCT
63 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGGTGCCAATATGCT
* *
2846 GACTCAAGGCCAGCGATATTGGACTTAAAGATG-A-AA-GCACCAATGTGCTGATTCAAGGCTAG
125 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGC-CCAATGTGCTGATTCAAGGCCAG
* * * * *
2908 CGACATTAGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCGAGCGATATCGGACTTAAA
189 CGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
* * *
2973 CATGAAGAAGCCC-ATGTGCTGATTCAA-GCCTGGCGACATTGGACATAAAGATGACGAAGGTGC
254 GATGAAGAAGCCCAATGTGCTGATTCAAGGCC-AGCGACATTGGACTTAAAGAT---GAAGGTGC
* * * * * *
3036 CAATATGTTGATTCAACGCTAGCGATTTTGGA-TTAAAAGATGA-AGA-TGCCAATGTGCTGATT
315 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAGAAAGCGCCAATGTGCTGATT
* * *
3098 CAAGGCCAGCAACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCGGCGAT
379 CAAGGCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
* **
3163 ATTGGACTTAAAGATGAAG-GTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGAT
442 ATTGGACTTAAAGATGAAGAG-GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-AT
** * * *
3227 GATGAAGGCGCTAATATGGC-GAGTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAAT
504 -ATGAAGATGCCAATAT-GCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAAT
* * * * * *
3291 GTGCTGATTCAAGGCTAGTGACACTGCACTTAAAGATGACGAAGGCACCAATATGCTGATTCAAG
567 GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAG
* * * * * *
3356 GCCAGTGATATCGGACTTGAAGATGAAGATGCCATTATGCTGATTCAAGGCCAGCGACATTGGAC
631 GCCAGCGATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGAC
* * * * * * *
3421 TTAAAGATGATGAAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAGTTAAAGAT-GAAG
696 TTAAAGATGAAG-AAG-GCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAG
* * * * * *
3485 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTT
759 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC--CAATATGCT
* ** * * * * *
3550 GATTCAAGGCCAGCGATACCGAACATAAATAT-GAAGATGCCAACGTGCTGATTCAAGGCCAGCG
821 GATTCAAGGCCAGCGACATTGGACTTAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCG
*
3614 ACTTTGGACTT
886 A-TATGGACTT
*
3625 AAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA--AA-
1 AAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAG
** * * *
3687 GCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGAT
63 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGAT
* * * *
3752 TCAAGGCGAGCGATATCGGACTTAAAGATGAAGAA-G-CCAATGTGCTGATTCAAGCCCGGCGAC
128 TCAAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGCGAC
* * * * *
3815 ATTGGACATAAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATATTGGATTTAAAG
193 ATTGGACTTAAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
*
3880 ATGAAGATG-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCA
255 ATGAAGAAGCCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGGTGCCA
** * *
3944 ATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGA-AGA-TGCCAATGTGCTGATTCAA
317 ATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAAGCGCCAATGTGCTGATTCAA
* ** * * * ** **
4007 GGCCAACGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCAATTCAAGGCCAGCGATACC
382 GGCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT
* * * * *
4072 GGAC-TAAGAGATGAAGATGCCAATGTGCTGATTCAAGGCGAGCGATATCGGACTTAAAGATGAA
445 GGACTTAA-AGATGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAA
* * * * * * * * * *
4136 GAAGCCAATGTGCTGATTCAAGCCCGGCGACATTGGACTTAAAGAAGACGAAGGCACCAATATGC
509 GATGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAG-ATG--CCAATGTGC
* * * ** * *
4201 TAATTCAAGGCCAGCGATTTTGGATTTAAAGAT--GAAGATGCCAATGTGCTGAGTCTAA-GCCA
571 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAGGCGCCAATATGCTGATTC-AAGGCCA
* ** ** ** * * * *
4263 GCGACATTAGACTTAAAGATGACGAAGGCGCCAACATGCTGATTCAAGGCCAGCAATATTGGATT
635 GCGATATCGGACTTAAAGAT-A--AAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACT
* * * * * * *
4328 TAAAGAT-AA-AGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACATAAAGAT-GAAGGT
697 TAAAGATGAAGAAG-GCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGAT
* ** * * * * * * *
4390 GCCAATATGCTGATTCAAGGCCAATGATATCGAACATGAAGATGAAGATGCCAATGTGCTAATTC
761 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTC
* * * *
4455 AAGGCCAGCGACATTGGACTTAAAAATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGTGATA
826 AAGGCCAGCGACATTGGACTTAAAGAT-A-GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA
4520 TTGGACTT
889 -TGGACTT
* * * * *
4528 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* * * * ** * *
4593 CTAATATGCCGAGTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCA
66 CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* * * * * * * *
4658 AGGCTAGTGACATTGCACTTAAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATAT
131 AGGCCAGCGATATTGGACTTAAAGATGAAGAAGGC-CCAATGTGCTGATTCAAGGCCAGCGACAT
* * * * * *
4723 CGGACTTGAAGATGAATATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAT
195 TGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
* * * * * * * * *
4788 GTAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGATGAAGATGCTAATGTGC
260 G-AAGC-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * ** * ** * *
4853 GGATTCAAGGCCAGCGACATTGGGGTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCA
323 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAAGCGCCAATGTGCTGATTCAAGGCCA
* ** * * * ** * *
4918 GCGATACCGAACATAAATAT-GAAGATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTTA
387 GCGACATTGGACATAAAGATAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * * *
4982 AAGATGACGAAGGTGCCAATATGCTGACTCAAGGCCAGCGATATTGGACTTAAAGATGAA-A-GC
452 AAGATGAAG-A-G-GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAAGATG-
* * * * * * *
5045 ACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
513 -CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGCTGATTC
* * * * * *
5110 AAGGCGAGCGATATCGGACTTAAACATGAAGAA-GC-CC-ATGTGCTGATTCAA-GCCTGGCGAC
577 AAGGCCAGCGATATTGGACTTAAAGATG-AGAAGGCGCCAATATGCTGATTCAAGGCC-AGCGAT
* * ** * * * ** *
5171 ATTGGACATAAAGATGACGAAGGCGCCAATATGTTGATTCAACGCTAGCGATTTTGGATTTAAAG
640 ATCGGACTTAAAGAT-A--AAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAG
* * * * *
5236 ATGAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCA
702 ATGAAGAAGGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGA-TA-GAAGATGCCA
* ** * * * * * * *
5300 ATATGCTGATTCAAGGCCAATGATATCGAACATGAAGATGAAGATGCCAATGTGCTAATTCAAGG
765 ATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGG
* * * *
5365 CCAGCGACATTGGACTTAAAAATGACGAAGGCGCCAATATGCTGATTCAAGGCCAGTGATATTGG
830 CCAGCGACATTGGACTTAAAGAT-A-GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA-TGG
5430 ACTT
892 ACTT
* * * * *
5434 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGATGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* * * * ** * *
5499 CTAATATGCCGAGTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCA
66 CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* * * * * * * *
5564 AGGCTAGTGACATTGCACTTAAAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATAT
131 AGGCCAGCGATATTGGACTTAAAGATGAAGAAGGC-CCAATGTGCTGATTCAAGGCCAGCGACAT
* * * * * *
5629 CGGACTTGAAGATGAATATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAT
195 TGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA
* * * * * * * * *
5694 GTAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGATGAAGATGCTAATGTGC
260 G-AAGC-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * ** * ** * *
5759 GGATTCAAGGCCAGCGACATTGGGGTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCA
323 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAAGCGCCAATGTGCTGATTCAAGGCCA
* ** * * * ** * *
5824 GCGATACCGAACATAAATAT-GAAGATGCCAACGTGCTGATTCAAGGCCAACGACATTGGACTTA
387 GCGACATTGGACATAAAGATAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
5888 AAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-A-GC
452 AAGATGAAG-A-G-GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAAGATG-
* * * * * * *
5951 ACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTC
513 -CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGCTGATTC
* * * * * *
6016 AAGGCGAGCGATATCGGACTTAAACATGAAGAA-GC-CC-ATGTGCTGATTCAA-GCCTGGCGAC
577 AAGGCCAGCGATATTGGACTTAAAGATG-AGAAGGCGCCAATATGCTGATTCAAGGCC-AGCGAT
* * ** * * * ** *
6077 ATTGGACATAAAGATGACGAAGGCGCCAATATGTTGATTCAACGCTAGCGATTTTGGATTTAAAG
640 ATCGGACTTAAAGAT-A--AAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAG
* * * * *
6142 ATGAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCA
702 ATGAAGAAGGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGA-TA-GAAGATGCCA
* * * ** *
6206 ATATGCTGATTCAAGGCCAGTGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGG
765 ATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGG
* * *
6271 CCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCTAGCGATACCGG
830 CCAGCGACATTGGACTTAAAGA-TA-GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA-TGG
6336 ACTT
892 ACTT
* * ** * * *
6340 AAAGCTGAAGATGCCAATGTGCTGATTCAAGGCCAATGATGTTGGACTTAAAGATGACGAAGGCG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* ** * ** * *
6405 CTAATATGCCAATTCAAGGCCAGCGATACCGGAC-TAAGAGATGAAGATGCCAATGTGCTGATTC
66 CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAA-AGATGAAGGTGCCAATATGCTGATTC
* * * * ** * * * *
6469 AAGGCTAGTGACATTGGACTTAAAGACGGCGAAGGCACCAATATGCTGATTCTAGGCCAGTGATA
130 AAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGC-CCAATGTGCTGATTCAAGGCCAGCGACA
* * * * *
6534 TAGGATTTGAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
194 TTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* * * * * * * * * *
6599 TGAAAGCGCCAATATGCTAATTCAAGGCCGGTGAAATCGGACTTAAAGATGAAGATGCTAATGTG
259 AG-AAGC-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATG
* * * ** * * *
6664 CTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCT
322 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAAGCGCCAATGTGCTGATTCAAGGCC
** * * ** ** *
6729 AGCG-CTACCGAACAT-AAG-TATGAAGATGCCAACGTGCTGATTCAAGGCCAATGACATTGGAC
386 AGCGAC-ATTGGACATAAAGATA-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
6791 TTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-A
449 TTAAAGATGAAG-A-G-GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAAGA
* * * *
6855 -GCACCAATGTGCTGATTCAAGGACAGTGATATCGGACTTGAAGATGAAGATGCCAATGTGCTGA
511 TG--CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGCTGA
* * * * * * *
6919 TTCAAGGCCAGCGACATTGGACTCAAAGTTGACGATA-GCGCTAATATGCTAATTCAAGGCCGGT
574 TTCAAGGCCAGCGATATTGGACTTAAAGATGA-GA-AGGCGCCAATATGCTGATTCAAGGCCAGC
* * * * *
6983 GAAATCGGACTTAAAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAG
637 GATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAG
* * * * * *
7048 ATGATGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-ATACGAAGATGCC
702 ATGAAGAAGGC--CAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATA-GAAGATGCC
* *
7111 AACGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAA-AGTGCCAATATCCTGATT
764 AATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGA-TGCCAATATGCTGATT
*
7175 CAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGAT
825 CAAGGCCAGCGACATTGGACTTAAAGA-TA-GAAGGTGCCAATGTGCTGATTCAAGGCCAGCGAT
*
7240 ACCGGACTT
888 A-TGGACTT
* * * *
7249 AAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGAAGGTG
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* * * ** * *
7314 CCAAAATGTTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATTTGCTGATTCA
66 CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
** * * * *
7379 AGGCCAATGATATCGGATTTGAAGATGAAG-ATG-CCAATGTGCTGATTCAAGGCCAGCGACATT
131 AGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGCGACATT
** * * * * ** *
7442 GGACTTAAAGATGACGAAGGCGCCAATATGCTAATTCAAGGCCGGTGAAATCAGAATTAAAGATG
196 GGACTTAAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
7507 AAGATG-CTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATTACGAAGGTGCCAATA
258 AAGAAGCCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-T--GAAGGTGCCAATA
* * * *
7571 TGCTGAATCAA-GCTTAGCGATATCGGACTTCAAGATGA-AGAA--GCCAATGTGCTGATTCAAG
320 TGCTGATTCAAGGC-CAGCGATATTGGACTTAAAGATGAGA-AAGCGCCAATGTGCTGATTCAAG
* * * * * *
7632 CCCGGTGACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATTTTG
383 GCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTG
* * * *
7697 GATTTAAGGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTACGA
446 GACTTAAAGATGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-TATGA
* *
7762 AGGTGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTGCTG
508 AGATGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGCTG
* * * * *
7827 ATTCAAGGCCAACGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCCAAC
573 ATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAGGCCAGC
* * * * * * **
7892 GATACCGGCCTTAAAGATGAGGATGCCAATGTGCTGATTCAAGGCCAACGATGTTGGACTTAAAG
637 GATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAG
* * * *
7957 ATGATGAAGGCGCTAATATGCCGAGTCAAGGCCAGCGATACCGGACTTAAAGAT-GAAGATGCCA
702 ATGAAGAAGGC-C-AATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATGCCA
* * * * *
8021 ATGTGCTGATTCAAGGCTAGTGACATTGCACTTAAAGATGACGAAGGCACCAATATGCTGATTCA
765 ATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATG--CCAATATGCTGATTCA
* * * * * *
8086 AGGCCAGTGATATCGGACTTGAAGAT-GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTG
827 AGGCCAGCGACATTGGACTTAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA-TG
8150 GACTT
891 GACTT
* * * * * * *
8155 AAAGATGATGAAAGCGCCAATATGCTAATTCAAGGCCTGTGAAATCGGACTT-AA-A-GATGAAG
1 AAAGATGA--AGA-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAG
* * * * * ** *
8217 ATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAGATGACGAAGGCGTTAATATGTT
63 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGGTGCCAATATGCT
**** * * * *
8282 GATTCAAGGCCAGCGATACCAAACATAAATATGAAG-ATG-CCAACGTGCTGATTCAAGGCCAGC
125 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGC
*
8345 GACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
190 GACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
8410 AAGATG-A-AAGCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCC
252 AAGATGAAGAAGC-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCC
* * ** *
8473 AATATGCTGAATCAAGGCTAGCGATATCAGACTTAAAGATGA-AGAA--GCCAATGTGCTAATTC
316 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGA-AAGCGCCAATGTGCTGATTC
* * * * * *
8535 AAGCCCGGCAACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATT
380 AAGGCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* * *
8600 TTGGATTTAAAGATGAAGATGCCAATGTGCTGATTCAAGCCCAGCGACATTGGACTTCAAGATTA
443 TTGGACTTAAAGATGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-TA
** ** * *
8665 CAAAGGCGCCAATATGTTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTG
505 TGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTG
** * * *
8730 CTGATTCAAGGCCAATGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCC
570 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAGGCC
* * * *
8795 AGCGATACCAGACTTAAAGATCAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTTA
634 AGCGATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTA
* * *
8860 AAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAGTGATATCGGACTTGAAGAT-GAAGATG
699 AAGATGAAGAAGG--CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATG
* * * * *
8924 CCAATGTGCTGATTGAAGGCCAGCGACATTGGACTTAAAGTTGACGAAAGCGCTAATATGCTAAT
762 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAG-ATGC-C-AATATGCTGAT
* * * * * * *
8989 TCAAGGCCGGTGAAATCGGACTTAAAGAT-GAAGATGCTAATGTGCTGATTCAAGGCCAGCGACA
824 TCAAGGCCAGCGACATTGGACTTAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA
*
9053 TTGGGCTT
889 -TGGACTT
* * * * ** * *
9061 AAAGATGACGAAGGCGTTAATATGTTGATTCAAGGCCAGCGATACCGAACAT-AA-AT-ATGAAG
1 AAAGATGAAG-ATGC--CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAG
* ** * * **
9123 ATGCCAACGTGCTGATTCGAGGCCAGTGACATTGGACTTAAAGATGACGAAGGCACCAATATGCT
63 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGGTGCCAATATGCT
* * * *
9188 GATTCAAGGCTAGTGATATTGGACTTAAAGATGAAG-ATG-CCAATGTGCTGATTCAAGGCCAAC
125 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGC
** * * ** *
9251 GATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCTGATTCAAGGCCAGCGATACCGGCCTTA
190 GACATTGGACTTAAAGATGAAG-ATGC-C-AATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * * * * * **
9316 AAGATGAGGATG-CTAATGTGCTGATTCAAAGCTAGTGACATTGGACTTAAAGAAGACGAAGGCA
252 AAGATGAAGAAGCCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT--A-AAGATGAAGGTG
* * * * *
9380 CCAATATGCTAATTCAAGGCCAGCGATTTTGGATTTAAAGA--AG-AAGATGCCAATGTGCTGAG
314 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAAG-CGCCAATGTGCTGAT
* * * * * * *
9442 TCTAGGCCAGCGACATTAGACTTAAAGATGACGAAGGCGCCAACATGGTGATTCAAGGCCAGCAA
378 TCAAGGCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
* * * * * *
9507 TATTGGATTTAAAGATAAAG-GTGCCAATGTGTTGATTCAAGGCCAACGACATTGGACATAAAAA
441 TATTGGACTTAAAGATGAAGAG-GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATA
* ** * *
9571 TGAAGGTGCCAATATGCTGATTCAAGGCCAATGATATCGGACATGAAGATGAAGATGCCAATGTG
505 TGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTG
* * *
9636 CTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTAATTCAAGGCC
570 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAGGCC
* * * * * * * * *
9701 GGTGAAATCAGAGTTAAAGATGAAGATGCTAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTA
634 AGCGATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTA
* ** * * * * *
9766 AAGATGACGAAGGAGTTAATATGTTGATTCAAGGCCAGCGATACCGAACATAAATAT-GAAGATG
699 AAGATGAAGAA-G-GCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATG
* * *
9830 CCAACGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGAT
762 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGATGCCAATATGCTGAT
* * ** * *
9895 TCAAGGCCAGCGATATTGGACTTAAAGAT-GAAAGCACCAATGTGCTGATTCAAGGCTAGCGACA
824 TCAAGGCCAGCGACATTGGACTTAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA
9959 TTGGACTT
889 -TGGACTT
** * * * * *
9967 AAAGAAAAAGGTGCCAATATGCTAATTCAAGGCGAGCGATATCGGACTTAAAGATGAAGAA---G
1 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
* * * *
10029 CCAATGTGCTGATTCAA-GCTCGGCGACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGA
66 CCAATATGCTGATTCAAGGC-CAGCGACATTGGACTTAAAGAT---GAAGGTGCCAATATGCTGA
* * * * *
10093 TTCAAGGCTAGCGGTATTGGATTTAAAGATGAAG-ATG-CCAATGTGCTGATTCAATGCCAGCGA
127 TTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGCGA
* * * * * * **** * *
10156 CATTGGGCTTAAAGATGACGAAGGCGTTAATATGTTGATTTAAGGCCAGCGATACCAAACATGAA
192 CATTGGACTTAAAGATGAAG-ATGC--CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
* * * * *
10221 TATGAAGATG-CCAACGTGTTGATTCAAGGCCAGCGACATTGGACTTCAAGACGACGAAGGTGCC
254 GATGAAGAAGCCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-GATGAAGGTGCC
*
10285 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAAGCACCAATGTGCTGATTCA
316 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAAGCGCCAATGTGCTGATTCA
* * * *
10348 AGGCTAGCGACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGATTT
381 AGGCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT
* * * *
10413 TGGATTTAAGGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTAC
444 TGGACTTAAAGATGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-TAT
*
10478 GAA-AGTGCCAATATGCTGATTCAAGGCCAGCGATACCGGACTTAAAGATGAAGATGCCAATGTG
506 GAAGA-TGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTG
* * * *
10542 CTGATTCAAGGCCAACGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCC
570 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAGGCC
* * * * *
10607 AGCGATACCGGACTTAAAGATCAAGATGCCAATGTGGTGATTCAAGGCTAGTGACGTTGGACTTA
634 AGCGATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTA
* ** *
10672 AAGATGACGAAGGCACCAATATGCTGATTCAAGGCCAATGATATCGGACTTGAAGAT-GAAGATG
699 AAGATGAAGAAGG--CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATG
* *
10736 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAACGAAGGTGCCAATATGCTAAT
762 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGAT
* * * ** * * * *
10801 TCAAGGCCGGTGAAATCAGAGTTAAAGAT-GAAGATGCTAATGTGCTGATTCAAGGCCAGCGACA
824 TCAAGGCCAGCGACATTGGACTTAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA
*
10865 TTGGGCTT
889 -TGGACTT
* * *
10873 AAAGATTACGAAGGTACCAATATGCTGATTCAAGGCCAGCGATACTGGACTT-AA-A-GATGAAG
1 AAAGA-T--GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAG
* * * ** *
10935 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGAGTTAATATGTT
63 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGGTGCCAATATGCT
* ** * * * * *
11000 GAGTCAAGGCCAGCGATACCGAACATAAATATGAAG-ATG-CCAACGTGCTGATTCAAGGCCAGC
125 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGC
*
11063 GACATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
190 GACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
11128 AAGATG-A-AAGCACCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCC
252 AAGATGAAGAAGC-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCC
* * * * *
11191 AATATGCTAATTCAAGGCGAGCGATATCGGACTTAAAGAT---AAAGAAGCCAAGGTGCTGATTC
316 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAAG-CGCCAATGTGCTGATTC
* * * * * * *
11253 AAGCCCGGTGACATTGGACATAAAGATGACGAAGGTCCCAATATGTTGATTCAAGGCTAGCGGTA
380 AAGGCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
11318 TTGGATTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTA
443 TTGGACTTAAAGATGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-TA
* * * * * * *
11383 CGAAGGTTCCAATATGTTGATTCAAGGCTAGCGGTACCGGACTTAAAGATGAAGATGCCAATGTG
505 TGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTG
* * * *
11448 CTGATTCAAGGCCAACGATGTTGGACTTAAAGATGACGAAGGCGCTAATATGCCGATTCAAGGCC
570 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAGGCC
* * *
11513 AGCGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTTA
634 AGCGATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTA
* * * *
11578 AAGATGACGAAGGCACCAATATGCTGATTCAAGACCAGTGATATCGGACTTGAAGAT-GAAGATG
699 AAGATGAAGAAGG--CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATG
* * * * *
11642 CGAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAAGCGCCAATATGCTAAT
762 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA--AGA-TGCCAATATGCTGAT
* * * ** * * * *
11707 TCAAGGCCGGTGAAATCAGACTTAAAGAT-GAAGATGCTAATGTGCTGTTTCAAGGCCAGCGACA
824 TCAAGGCCAGCGACATTGGACTTAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATA
*
11771 TTGGGCTT
889 -TGGACTT
* * *
11779 AAAGATTACGAAGGTGCCAATATGCTGATTCAAGGCCGGCGATACTGGACTT-AA-A-GATGAAG
1 AAAGA-T--GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAG
* * * ** *
11841 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGAAGGAGTTAATATGTT
63 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---GAAGGTGCCAATATGCT
** * * * * * * *
11906 GATTCAAGGCCAGCGATACCGAACATAAATATGAAG-ATG-CCAACGTGTTGATTCATGGCCAGC
125 GATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGC
* * *
11969 GACATTGGACTTAAAGATGACGAAGGTGCCAATATGATGATTCAAGGCTAGCGATATTGGACTTA
190 GACATTGGACTTAAAGAT---GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
12034 AAGATG-A-AAGCAGCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAAAGGTGCC
252 AAGATGAAGAAGC-CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCC
* * * **
12097 AATATGCTAATTCCAGGCGAGCGATATCAGACTTAAAGATGA-AGAA--GCCAATGTGCTGATTC
316 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGA-AAGCGCCAATGTGCTGATTC
* * * * *
12159 AAGCCCGGCGACATTGGACATAAAGATGACGAAGGTGCCAATATGTTGATTCAAGGCTAGCGGTA
380 AAGGCCAGCGACATTGGACATAAAGAT-A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATA
* *
12224 TTGGATTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATTA
443 TTGGACTTAAAGATGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-TA
* * * * * *
12289 CGAAGGTTCCAATATGTTGATTCAAGGCTAGCGATACCGGACTTAAAGATGAAGATGCCAATGTG
505 TGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTG
* * * * *
12354 TTGATTCAAGGCCAACGATGTTGGACTTAAAGATGACGAAGGCACTAATATGCTGATTCAAGGCC
570 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-GAAGGCGCCAATATGCTGATTCAAGGCC
* * * * * * *
12419 AGCGATACCAGACTTAAAGATCAAGATGCCAATGTGGTGATACAAGGCTAGTGACGTTGGACTTA
634 AGCGATATCGGACTTAAAGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTA
* * ** * *
12484 AAGATGACGAAGGCACCAATATGCTAATTCAAGGCCAATGATATCGGACTTGAAGAT-GAAGGTG
699 AAGATGAAGAAGG--CCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATG
12548 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA
762 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAA
12586 TTATGTCCGA
Statistics
Matches: 10120, Mismatches: 1320, Indels: 470
0.85 0.11 0.04
Matches are distributed among these distances:
900 153 0.02
901 1 0.00
902 35 0.00
903 1578 0.16
904 59 0.01
905 61 0.01
906 6570 0.65
907 59 0.01
908 50 0.00
909 1536 0.15
910 10 0.00
911 5 0.00
912 3 0.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (895 bp):
AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGATGAAGGTG
CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGATGAAGAAGGCCCAATGTGCTGATTCAAGGCCAGCGACATT
GGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAG
AAGCCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGA
TTCAAGGCCAGCGATATTGGACTTAAAGATGAGAAAGCGCCAATGTGCTGATTCAAGGCCAGCGA
CATTGGACATAAAGATAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA
TGAAGAGGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAATATGAAGATGCCAATATG
CTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGC
GATATTGGACTTAAAGATGAGAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTTAA
AGATAAAGATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGAAGAAGGCCAA
TATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATAGAAGATGCCAATGTGCTGATTCAAGG
CCAGCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGACATTGGACT
TAAAGATAGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATGGACTT
Found at i:12773 original size:101 final size:101
Alignment explanation
Indices: 12590--15018 Score: 3059
Period size: 101 Copynumber: 24.1 Consensus size: 101
12580 ACTTAATTAT
* * * * * ** *
12590 GTCCGATATCGTTGGCCTTGACTCGGCATATTAGCGCCTTCATCATCTTTAAGTCCAACATCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
12655 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* *
12691 GTCCAATATCACTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* * *
12756 GGCCTTGAATCAACACATT-GCAATCTTCATCTTCAT
66 GGCCTTGAATCAGCACATTGGC-ATCTTCATCTTTAA
** * * * *
12792 GTCCGATATCATTGGCCTTGAATCAGCATATTGGCACC-T--TCATTTTTATGTCCAATGTCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
12854 GGCCTTGAATCAGCACATTGGCACCTTTATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * ** * *
12890 ATCCAATATTGCTGGCCTTGAATCAGCATGCTGGCGGCTTCGTCATCTTTAAGTCTAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
*
12955 GGCCTAGAATCAGCACATTGGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * * * *
12991 ATCCAAAATCGCTGGCCTTGAATTAGCATATTGGTGCCTTCGTCTTCTTTAAGTCCAATGTCACT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
13056 AGCCTTGAATCAGCACATTGGCATCCTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * * * ** *
13092 GGCCGGTATCGCTGGCCTTGAATCGGCATATTAGCGCCTTCATCATCTTTACGTCCAACATCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
13157 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * *
13193 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
13258 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* *
13294 GTCCAATATCACTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* * *
13359 GGCCTTGAATCAACACATT-GCAATCTTCATCTTCAT
66 GGCCTTGAATCAGCACATTGGC-ATCTTCATCTTTAA
** * * * *
13395 GTCCGATATCATTGGCCTTGAATCAGCATATTGGCACC-T--TCATTTTTATGTCCAATGTCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
13457 GGCCTTGAATCAGCACATTGGCACCTTTATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * ** * *
13493 ATCCAATATTGCTGGCCTTGAATCAGCATGCTGGCGGCTTCGTCATCTTTAAGTCTAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
13558 GGCCTAGACTCAGCACATTGGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * * * *
13594 ATCCAAAATCGCTGGCCTTGAATTAGCATATTGGTGCCTTCGTCTTCTTTAAGTCCAATGTCACT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
13659 AGCCTTGAATCAGCACATTGGCATCCTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * * * ** *
13695 GGCCGGTATCGCTGGCCTTGAATCGGCATATTAGCGCCTTCATCATCTTTACGTCCAACATCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
13760 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * *
13796 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* * *
13861 GGCCTTGAATCAGCACGTTGGCATCTTCATATTTAT
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * ** *
13897 GTTCGGTATCACTGGCCTTGAATCAACATATTAACGCCTTCGTCATCTTTAAGCCCAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
*
13962 GGCCTTGAATCAGCACATTAGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * *
13998 GTCCGATTTCACCGGCCTTGAATTAGCATATTGGCGCTTTCGTCATCTTTAAGTCCAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
*
14063 GGCCTTGAATCAGCACATTGGCATCTTCATCTTCAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * * * * * *
14099 ATCCTATATCACTAGCCTTGAATCAGCATAATGGTGCCTTCGCCGTCTTTAAGTCCAATGTCACT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
14164 AGCCTTGAATCAGCACATTGGCATCTTCATCTCTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* ** * ** *
14200 GTCCGGTATCGCTGGCCTTGAATTGGCATATTAGCGCCTTCGTCATCTTTAAGTCCAACATCGTT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
14265 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * *
14301 GTCCGGTATCGCTGGCCTTGAATCAGCATATTGGCACCTTCGTAATCTTTAAGTCCAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
14366 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * * * * *
14402 ATCCAATATCGCTAGCCTTGAATCAACATATTGGCACCTTCGTCGTCTTTATGTCCAATGTCGCC
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
14467 GGGCTTGAATCAGCACATTGGCTTCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * *
14503 GTCTGATATCGCTAGCCTTGATTCAGCATATTGGCACCTT--T-ATCTTTAAGTCCAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* *
14565 AGCCTTGAATCAGCATATTGG--TGCTTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCAT-C-TTCATCTTTAA
* * * * * *
14601 GTCCAATATCGCCGGCCTTGAATCAGCATATTAGCACCTTCGACATCTTTAAGTCCAAAGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
* * * *
14666 GGCCTTGAATCAGCACGTTGGCGTCTTCATATTTAT
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * ** *
14702 GTTCGGTATCGCTAGCCTTGAATCAACATATTAACGCCTTCGTCATCTTTAAGCCCAATGTCGCT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
*
14767 GGCCTTGAATCAGCACATTAGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * *
14803 GTCCGATTTCACCGGCCTTGAATTAGCATATTGGCG-CTTACATCATCTTTAAGTCCAATGTCGC
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT-CGTCATCTTTAAGTCCAATGTCGC
*
14867 TGGCCTTGAATCAGCACATTGGCATCTTCATCTTCAA
65 TGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
* * * * *
14904 GTCCGATATCACTGGCCTTGAATCAGCATATTGGTGCCTTCGTCATCTTTAAGTGCATTGTCACT
1 GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
*
14969 AGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
66 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
*
15005 GTCCGGTATCGCTG
1 GTCCGATATCGCTG
15019 TGTCAAAATA
Statistics
Matches: 1995, Mismatches: 314, Indels: 38
0.85 0.13 0.02
Matches are distributed among these distances:
96 1 0.00
97 1 0.00
98 235 0.12
99 7 0.00
100 9 0.00
101 1737 0.87
102 4 0.00
103 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (101 bp):
GTCCGATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCT
GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAA
Found at i:12834 original size:43 final size:44
Alignment explanation
Indices: 12786--12880 Score: 102
Period size: 49 Copynumber: 2.1 Consensus size: 44
12776 CAATCTTCAT
* *
12786 CTTC-ATGTCCGATATCATTGGCCTTGAATCAGCATATTGGCAC
1 CTTCTATGTCCAATATCATTGGCCTTGAATCAGCACATTGGCAC
* *
12829 CTTCATTTTTATGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCAC
1 CTTC-----TATGTCCAATATCATTGGCCTTGAATCAGCACATTGGCAC
12878 CTT
1 CTT
12881 TATCTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
43 4 0.10
49 38 0.90
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (44 bp):
CTTCTATGTCCAATATCATTGGCCTTGAATCAGCACATTGGCAC
Found at i:13437 original size:43 final size:44
Alignment explanation
Indices: 13389--13483 Score: 102
Period size: 49 Copynumber: 2.1 Consensus size: 44
13379 CAATCTTCAT
* *
13389 CTTC-ATGTCCGATATCATTGGCCTTGAATCAGCATATTGGCAC
1 CTTCTATGTCCAATATCATTGGCCTTGAATCAGCACATTGGCAC
* *
13432 CTTCATTTTTATGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCAC
1 CTTC-----TATGTCCAATATCATTGGCCTTGAATCAGCACATTGGCAC
13481 CTT
1 CTT
13484 TATCTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
43 4 0.10
49 38 0.90
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (44 bp):
CTTCTATGTCCAATATCATTGGCCTTGAATCAGCACATTGGCAC
Found at i:13746 original size:603 final size:602
Alignment explanation
Indices: 12590--15018 Score: 3266
Period size: 603 Copynumber: 4.0 Consensus size: 602
12580 ACTTAATTAT
* * * * * * * **
12590 GTCCGATATCGTTGGCCTTGACTCGGCATATTAGCGCCTTCATCATCTTTAAGTCCAACATCGTT
1 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
12655 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCAT
66 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCAT
12720 ATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGCAATCTTCA
131 ATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGC-ATCTTCA
* ** * *
12785 TCTTCATGTCCGATATCATTGGCCTTGAATCAGCATATTGGCACCTTCATTTTTATGTCCAATGT
195 TCTTCAAGTCCGATATCACCGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* * * *
12850 CGTTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAATCCAATATTGCTGGCCTTGAATCA
260 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAATCCAATATCGCTAGCCTTGAATCA
* * *
12915 GCATGCTGGCGGCTTCGTCATCTTTAAGTCTAATGTCGCTGGCCTAGAATCAGCACATTGGCATC
325 GCATACTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTAGAATCAGCACATTGGCATC
* *
12980 TTCATCTTTAAATCCAAAATCGCTGGCCTTGAATTAGCATATTGGTGCCTTCGTCTTCTTTAAGT
390 TTCATCTTTAAATCCAAAATCGCTGGCCTTGAATTAGCATATTGGCGCCTTCGTCATCTTTAAGT
13045 CCAATGTCACTAGCCTTGAATCAGCACATTGGCATCCTCATCTTTAAGGCCGGTATCGCTGGCCT
455 CCAATGTCACTAGCCTTGAATCAGCACATTGGCATCCTCATCTTTAAGGCCGGTATCGCTGGCCT
* * *
13110 TGAATCGGCATATTAGCGCCTTCATCATCTTTACGTCCAACATCGTTGGCCTTGAATCAGCACAT
520 TGAATCAGCATATTAGCGCCTTCATCATCTTTAAGTCCAACATCGCTGGCCTTGAATCAGCACAT
13175 TGGCATCTTCATCTTTAA
585 TGGCATCTTCATCTTTAA
13193 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
1 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
13258 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCAT
66 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCAT
13323 ATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGCAATCTTCA
131 ATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGC-ATCTTCA
* ** * *
13388 TCTTCATGTCCGATATCATTGGCCTTGAATCAGCATATTGGCACCTTCATTTTTATGTCCAATGT
195 TCTTCAAGTCCGATATCACCGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* * * *
13453 CGTTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAATCCAATATTGCTGGCCTTGAATCA
260 CGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAATCCAATATCGCTAGCCTTGAATCA
* * * *
13518 GCATGCTGGCGGCTTCGTCATCTTTAAGTCTAATGTCGCTGGCCTAGACTCAGCACATTGGCATC
325 GCATACTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTAGAATCAGCACATTGGCATC
* *
13583 TTCATCTTTAAATCCAAAATCGCTGGCCTTGAATTAGCATATTGGTGCCTTCGTCTTCTTTAAGT
390 TTCATCTTTAAATCCAAAATCGCTGGCCTTGAATTAGCATATTGGCGCCTTCGTCATCTTTAAGT
13648 CCAATGTCACTAGCCTTGAATCAGCACATTGGCATCCTCATCTTTAAGGCCGGTATCGCTGGCCT
455 CCAATGTCACTAGCCTTGAATCAGCACATTGGCATCCTCATCTTTAAGGCCGGTATCGCTGGCCT
* * *
13713 TGAATCGGCATATTAGCGCCTTCATCATCTTTACGTCCAACATCGTTGGCCTTGAATCAGCACAT
520 TGAATCAGCATATTAGCGCCTTCATCATCTTTAAGTCCAACATCGCTGGCCTTGAATCAGCACAT
13778 TGGCATCTTCATCTTTAA
585 TGGCATCTTCATCTTTAA
13796 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
1 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
* * * * * * ** *
13861 GGCCTTGAATCAGCACGTTGGCATCTTCATATTTATGTTCGGTATCACTGGCCTTGAATCAACAT
66 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCAT
** * *
13926 ATTAACGCCTTCGTCATCTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTAGCATCTTCA
131 ATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATT-GCATCTTCA
* * * * *
13991 TCTTTAAGTCCGATTTCACCGGCCTTGAATTAGCATATTGGCGCTTTCGTCATCTTTAAGTCCAA
195 TCTTCAAGTCCGATATCACCGGCCTTGAATCAGCATATTGGCAC---CTTCATCTTTAAGTCCAA
* * * *
14056 TGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTCAAATCCTATATCACTAGCCTTGAA
257 TGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAATCCAATATCGCTAGCCTTGAA
* * * * * * *
14121 TCAGCATAATGGTGCCTTCGCCGTCTTTAAGTCCAATGTCACTAGCCTTGAATCAGCACATTGGC
322 TCAGCATACTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTAGAATCAGCACATTGGC
* * *** * *
14186 ATCTTCATCTCTAAGTCCGGTATCGCTGGCCTTGAATTGGCATATTAGCGCCTTCGTCATCTTTA
387 ATCTTCATCTTTAAATCCAAAATCGCTGGCCTTGAATTAGCATATTGGCGCCTTCGTCATCTTTA
** ** * * *
14251 AGTCCAACATCGTTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCGGTATCGCTGG
452 AGTCCAATGTCACTAGCCTTGAATCAGCACATTGGCATCCTCATCTTTAAGGCCGGTATCGCTGG
* * * * **
14316 CCTTGAATCAGCATATTGGCACCTTCGTAATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
517 CCTTGAATCAGCATATTAGCGCCTTCATCATCTTTAAGTCCAACATCGCTGGCCTTGAATCAGCA
14381 CATTGGCATCTTCATCTTTAA
582 CATTGGCATCTTCATCTTTAA
* * * * * * **
14402 ATCCAATATCGCTAGCCTTGAATCAACATATTGGCACCTTCGTCGTCTTTATGTCCAATGTCGCC
1 GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
* ** * ** * * *
14467 GGGCTTGAATCAGCACATTGGCTTCTTCATCTTTAAGTCTGATATCGCTAGCCTTGATTCAGCAT
66 GGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCAT
* * * * *
14532 ATTGGCACCTT--T-ATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCATATTG-GTGCTTTC
131 ATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGCAT-C-TTC
* * * *
14593 ATCTTTAAGTCCAATATCGCCGGCCTTGAATCAGCATATTAGCACCTTCGACATCTTTAAGTCCA
194 ATCTTCAAGTCCGATATCACCGGCCTTGAATCAGCATATTGGCACCTT---CATCTTTAAGTCCA
* * ** * ** * **
14658 AAGTCGCTGGCCTTGAATCAGCACGTTGGCGTCTTCATATTTATGTTCGGTATCGCTAGCCTTGA
256 ATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAATCCAATATCGCTAGCCTTGA
* * ** * * *
14723 ATCAACATATTAACGCCTTCGTCATCTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTAG
321 ATCAGCATACTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTAGAATCAGCACATTGG
* * ** * * *
14788 CATCTTCATCTTTAAGTCCGATTTCACCGGCCTTGAATTAGCATATTGGCG-CTTACATCATCTT
386 CATCTTCATCTTTAAATCCAAAATCGCTGGCCTTGAATTAGCATATTGGCGCCTT-CGTCATCTT
* * * * * * *
14852 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTCAAGTCCGATATCACT
450 TAAGTCCAATGTCACTAGCCTTGAATCAGCACATTGGCATCCTCATCTTTAAGGCCGGTATCGCT
* * * * *** * *
14917 GGCCTTGAATCAGCATATTGGTGCCTTCGTCATCTTTAAGTGCATTGTCACTAGCCTTGAATCAG
515 GGCCTTGAATCAGCATATTAGCGCCTTCATCATCTTTAAGTCCAACATCGCTGGCCTTGAATCAG
14982 CACATTGGCATCTTCATCTTTAA
580 CACATTGGCATCTTCATCTTTAA
**
15005 GTCCGGTATCGCTG
1 GTCCAATATCGCTG
15019 TGTCAAAATA
Statistics
Matches: 1658, Mismatches: 158, Indels: 20
0.90 0.09 0.01
Matches are distributed among these distances:
600 2 0.00
601 1 0.00
602 5 0.00
603 1212 0.73
604 3 0.00
606 435 0.26
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (602 bp):
GTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTT
GGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATCACTGGCCTTGAATCAGCAT
ATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGCATCTTCAT
CTTCAAGTCCGATATCACCGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTC
GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAATCCAATATCGCTAGCCTTGAATCAG
CATACTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTAGAATCAGCACATTGGCATCT
TCATCTTTAAATCCAAAATCGCTGGCCTTGAATTAGCATATTGGCGCCTTCGTCATCTTTAAGTC
CAATGTCACTAGCCTTGAATCAGCACATTGGCATCCTCATCTTTAAGGCCGGTATCGCTGGCCTT
GAATCAGCATATTAGCGCCTTCATCATCTTTAAGTCCAACATCGCTGGCCTTGAATCAGCACATT
GGCATCTTCATCTTTAA
Found at i:23695 original size:13 final size:13
Alignment explanation
Indices: 23677--23707 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
23667 ACAATTCATC
*
23677 ATGTATCGATATA
1 ATGTATCGATACA
23690 ATGTATCGATACA
1 ATGTATCGATACA
23703 ATGTA
1 ATGTA
23708 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:23701 original size:33 final size:33
Alignment explanation
Indices: 23656--23720 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
23646 CGTTACAAGC
* *
23656 AATGTATGGATACAAT-TCATCATGTATCGATAT
1 AATGTATCGATACAATGT-ACCATGTATCGATAT
23689 AATGTATCGATACAATGTACCATGTATCGATA
1 AATGTATCGATACAATGTACCATGTATCGATA
23721 CAAACAGTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (33 bp):
AATGTATCGATACAATGTACCATGTATCGATAT
Found at i:23796 original size:19 final size:18
Alignment explanation
Indices: 23751--23808 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 18
23741 ACTGCCAGTT
23751 TCATGTATCGATACAATTG
1 TCATGTATCGATACAA-TG
23770 TCCATGTATCGATACAATG
1 T-CATGTATCGATACAATG
23789 ATCATGTATCGATACAATG
1 -TCATGTATCGATACAATG
23808 T
1 T
23809 ATCGATACAA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.54
20 16 0.43
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:23810 original size:13 final size:13
Alignment explanation
Indices: 23792--23818 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23782 TACAATGATC
23792 ATGTATCGATACA
1 ATGTATCGATACA
23805 ATGTATCGATACA
1 ATGTATCGATACA
23818 A
1 A
23819 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:23814 original size:32 final size:33
Alignment explanation
Indices: 23773--23837 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
23763 ACAATTGTCC
* * *
23773 ATGTATCGATACAATG-ATCATGTATCGATACA
1 ATGTATCGATACAAAGCATAATGTACCGATACA
23805 ATGTATCGATACAAAGCATAATGTACCGATACA
1 ATGTATCGATACAAAGCATAATGTACCGATACA
23838 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTACCGATACA
Found at i:26859 original size:81 final size:79
Alignment explanation
Indices: 26670--26863 Score: 230
Period size: 81 Copynumber: 2.4 Consensus size: 79
26660 AGATAACAAT
* * * * *
26670 GGGGCTGGAGTATCCCCGATTATGGAAAATCGATGTTTTGGAAATAAAATCGAGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAAAAAAATCGAGGTTGGAGTATC
26735 CCCTCAGAAATAAC
66 CCCTCAGAAATAAC
* * ** * *
26749 AGGGTTAGAGTATCCTTGATTAT-AGAAAATCGGTATTTTGAAAAAAAAAAATCGGGGTTGGAGT
1 GGGGTTGGAGTATCCCCGATTATGA-AAAATCGATATTTTG--AAAAAAAAATCGAGGTTGGAGT
26813 ATCCCCTC-GAAAATAAC
63 ATCCCCTCAG-AAATAAC
*
26830 GGGGTTGGAGTATCCCCGATTGTGAAAAATCGAT
1 GGGGTTGGAGTATCCCCGATTATGAAAAATCGAT
26864 GCTTTAAAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
79 31 0.33
80 1 0.01
81 60 0.65
82 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAAAAAAATCGAGGTTGGAGTATC
CCCTCAGAAATAAC
Found at i:26926 original size:51 final size:51
Alignment explanation
Indices: 26829--26948 Score: 141
Period size: 51 Copynumber: 2.4 Consensus size: 51
26819 TCGAAAATAA
* * *
26829 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGCTTTAAAAATAAGGC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAAAAATAAAGC
* * * ** *
26880 CGGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTTGGAAATAAAGT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAAAAATAAAGC
* *
26931 CGAGGTTGGAGTGTCCCC
1 CGGGGTTGGAGTATCCCC
26949 TCAGAAAATA
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAAAAATAAAGC
Found at i:26987 original size:131 final size:130
Alignment explanation
Indices: 26796--27266 Score: 547
Period size: 131 Copynumber: 3.6 Consensus size: 130
26786 TTGAAAAAAA
*
26796 AAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATC
1 AAAATCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATC
* * ** * ** * *
26861 GATGCTTTAAAAATAAGGCCGGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTTGGAAAT
66 GATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGAGAAATTGATGTTTTAGAAAT
* * * *
26926 AAAGTCGAGGTTGGAGTGTCCCCTCAGAAAATAAGGGGGTTGGAGTATCCCCGATTATGAAAAAT
1 AAAATCGAGGTTGGAGTATCCCCTC-GAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAAT
* * * * *
26991 TGATGTTTTGGAAATAAAATCGGAGATGGAGTATCCCCGATTGTG-GAAAATTGATGTTTTAGAA
65 CGATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGAG-AAATTGATGTTTTAGAA
27055 AT
129 AT
* * * * ** * *
27057 AAAATCGGGGTTGGAGTATCCCCT-TAGAA-AACGGGGTTAGAGTATCCCTAATGGTGGAAAATC
1 AAAATCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATC
**
27120 GATGTTTTGAAAATAAAACTAGGGTTGGAGTATCCCCGATTGCTGA-AAATTGATGTTTTAGAAA
66 GATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTG-TGAGAAATTGATGTTTTAGAAA
27184 T
130 T
* * * * *
27185 AAAACCGAGGTTGGAGTGT-CCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTAAAAAATT
1 AAAATCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATC
* * *
27249 GGTATTTTGGAAATAAAA
66 GATGTTTTGAAAATAAAA
27267 ACATGAATGA
Statistics
Matches: 281, Mismatches: 54, Indels: 13
0.81 0.16 0.04
Matches are distributed among these distances:
127 4 0.01
128 100 0.36
129 46 0.16
130 23 0.08
131 108 0.38
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (130 bp):
AAAATCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATC
GATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGAGAAATTGATGTTTTAGAAAT
Found at i:27021 original size:80 final size:80
Alignment explanation
Indices: 26881--27028 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
26871 AAATAAGGCC
* * * * * *
26881 GGGGTTGGAGTATCCTCGATTGTGAGAAATCAATATTTTGGAAATAAAGTCGAGGTTGGAGTGTC
1 GGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAATCGAGGATGGAGTATC
26946 CCCTCAGAAAATAAG
66 CCCTCAGAAAATAAG
** *
26961 GGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCG-GAGATGGAGTAT
1 GGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAATCGAG-GATGGAGTAT
27025 CCCC
65 CCCC
27029 GATTGTGGAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.02
80 57 0.98
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (80 bp):
GGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAATCGAGGATGGAGTATC
CCCTCAGAAAATAAG
Found at i:27027 original size:51 final size:51
Alignment explanation
Indices: 26966--27079 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 51
26956 ATAAGGGGGT
*
26966 TGGAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCGGAGA
1 TGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGAGA
* * * *
27017 TGGAGTATCCCCGATTGTGGAAAATTGATGTTTTAGAAATAAAATCGGGGT
1 TGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGAGA
27068 TGGAGTATCCCC
1 TGGAGTATCCCC
27080 TTAGAAAACG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
TGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGAGA
Found at i:27120 original size:259 final size:259
Alignment explanation
Indices: 26796--27266 Score: 660
Period size: 259 Copynumber: 1.8 Consensus size: 259
26786 TTGAAAAAAA
* * *
26796 AAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATC
1 AAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTATCCCCAATGGTGAAAAATC
** * * *
26861 GATGCTTTAAAAATAAGGCCGGGGTTGGAGTATCCTCGATTG-TGAGAAATCAATATTTTGGAAA
66 GATGCTTTAAAAATAAAACCAGGGTTGGAGTATCCCCGATTGCTGA-AAATCAATATTTTAGAAA
** ** *
26925 TAAAGTCGAGGTTGGAGTGTCCCCTCAGAAAATAAGGGGGTTGGAGTATCCCCGATTATGAAAAA
130 TAAAACCGAGGTTGGAGTGT-CCCTC-GAAAATAACAGGGTTGGAGTATCCCCGATTATAAAAAA
*
26990 TTGATGTTTTGGAAATAAAATCGGAGATGGAGTATCCCCGATTGTGGAAAATTGATGTTTTAGAA
193 TTGATATTTTGGAAATAAAATCGGAGATGGAGTATCCCCGATTGTGGAAAATTGATGTTTTAGAA
27055 AT
258 AT
* * * *
27057 AAAATCGGGGTTGGAGTATCCCCT-TAGAA-AACGGGGTTAGAGTATCCCTAATGGTGGAAAATC
1 AAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTATCCCCAATGGTGAAAAATC
* * * ** *
27120 GATGTTTTGAAAATAAAACTAGGGTTGGAGTATCCCCGATTGCTGAAAATTGATGTTTTAGAAAT
66 GATGCTTTAAAAATAAAACCAGGGTTGGAGTATCCCCGATTGCTGAAAATCAATATTTTAGAAAT
*
27185 AAAACCGAGGTTGGAGTGTCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTAAAAAATTG
131 AAAACCGAGGTTGGAGTGTCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTATAAAAAATTG
*
27250 GTATTTTGGAAATAAAA
196 ATATTTTGGAAATAAAA
27267 ACATGAATGA
Statistics
Matches: 183, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
257 52 0.28
258 5 0.03
259 96 0.52
260 6 0.03
261 24 0.13
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (259 bp):
AAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTATCCCCAATGGTGAAAAATC
GATGCTTTAAAAATAAAACCAGGGTTGGAGTATCCCCGATTGCTGAAAATCAATATTTTAGAAAT
AAAACCGAGGTTGGAGTGTCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTATAAAAAATTG
ATATTTTGGAAATAAAATCGGAGATGGAGTATCCCCGATTGTGGAAAATTGATGTTTTAGAAAT
Found at i:37444 original size:13 final size:13
Alignment explanation
Indices: 37428--37459 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
37418 AAGCAGAAAG
37428 AAAAACAAAACAA
1 AAAAACAAAACAA
37441 AAAAACAAAACAA
1 AAAAACAAAACAA
37454 AGAAAA
1 A-AAAA
37460 AGAACCTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.84, C:0.12, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAACAAAACAA
Found at i:38578 original size:59 final size:59
Alignment explanation
Indices: 38429--39549 Score: 1359
Period size: 59 Copynumber: 19.3 Consensus size: 59
38419 TCCGCTTTTT
* * * **
38429 AGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCACACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* * *
38490 AGTCTTGAAAGAGCAGGACACCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
38549 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTCGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
38608 AGTCCTCAAAGAGCAAGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * ** *
38667 AATCCTCAAATAGTGGGATGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
38726 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
38785 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
38844 AGTCCTCAAAAAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
38903 AGTCCTCAAAGAGCGGGATGCCTTTTCTTTTAAAGCCCACACAAGTTGGTAGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
38962 AGTCCTCAAAGAGCGGGACGCCTTTTTTTTTAAAGCCCATACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * * *
39021 AGTCCTCAAAGAGCGGGACGGCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCGCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
** * *
39080 AGTCCTCAAAGAGCAGGATACTTTTTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACC-TTC
* * * * * **
39141 AGTCCCCAAGGAGCAGGACACC-TTTC----AATGCCCGCACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* *
39196 AGTCCTCAAAGAGCAGGACACC---TC--TCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* * *
39251 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACA-AGAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACA-AGTTGGTGGCAC-CTTC
* * **
39312 AGTCCCCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* * *
39367 AATCCTCGAAGAGCAGGACACC---TC--TTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* * *
39422 AATCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACGAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* * * * *
39477 AGTCCTTAAAGAGCAAGACGCC-TTTC----AAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTC
*
39532 AGTCCTCAAAGAGTAGGA
1 AGTCCTCAAAGAGCAGGA
39550 TACACTTTAT
Statistics
Matches: 952, Mismatches: 86, Indels: 50
0.88 0.08 0.05
Matches are distributed among these distances:
53 4 0.00
54 5 0.01
55 260 0.27
56 5 0.01
57 2 0.00
58 2 0.00
59 528 0.55
60 61 0.06
61 85 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (59 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
Found at i:40330 original size:19 final size:19
Alignment explanation
Indices: 40306--40353 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
40296 CAGCGATTTC
40306 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
*
40325 TATCGATACATAAGTTTTG
1 TATCGATACATAAGTGTTG
40344 TATCGATACA
1 TATCGATACA
40354 ATGTATCGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (19 bp):
TATCGATACATAAGTGTTG
Found at i:42931 original size:27 final size:27
Alignment explanation
Indices: 42879--42955 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
42869 CATCAATTTT
**
42879 TCATCGGGGATACTCCAACCTTGTTAA
1 TCATCGGGGATACTCCAACCCCGTTAA
*
42906 TCATCGGGGATTCTCCAACCCCGTT-A
1 TCATCGGGGATACTCCAACCCCGTTAA
**
42932 TTTTCGAGGGGATACTCCAACCCC
1 TCATC--GGGGATACTCCAACCCC
42956 CGGCTCTATT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.10
27 22 0.52
28 16 0.38
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.27
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCGTTAA
Found at i:43086 original size:79 final size:80
Alignment explanation
Indices: 42908--43087 Score: 231
Period size: 80 Copynumber: 2.3 Consensus size: 80
42898 CTTGTTAATC
* * *
42908 ATCGGGGATTCTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCGGCTCTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCCGGCTCTATTTCTAAAA
* *
42973 TATTAATTTCTCATA
66 TATGAATTTCTCACA
* * * *
42988 ATCAGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAA-CCCCGGTTTTATTTC-CAAA
1 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCCGGCTCTATTTCTAAAA
*
43051 TCATCGATTTTCT-ACA
66 T-AT-GAATTTCTCACA
43067 ATCGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
43088 GCTTTATTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 4 0.05
79 37 0.43
80 46 0.53
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCCGGCTCTATTTCTAAAA
TATGAATTTCTCACA
Found at i:43146 original size:52 final size:51
Alignment explanation
Indices: 43021--43188 Score: 194
Period size: 52 Copynumber: 3.3 Consensus size: 51
43011 ATCTCCGAGG
* * * * *
43021 GGATACTCCAACCCCGGTTTTATTTCCAAATCATCGATTTTCTACAATCGG
1 GGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCTACAATCGA
* **
43072 GGATACTCCAACCCCGGCTTTATTTTCAAAACACCAATTTTCCTTTAATCGA
1 GGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTT-CTACAATCGA
* * * *
43124 GGATACTCCAACTCCGATTTTATTTCTAAAAACACCAATTTT-TCACAATTGA
1 GGATACTCCAACCCCGGTTTTATTT-TCAAAACACCAATTTTCT-ACAATCGA
43176 GGATACTCCAACC
1 GGATACTCCAACC
43189 TCATTATTTC
Statistics
Matches: 98, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
51 37 0.38
52 46 0.47
53 15 0.15
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (51 bp):
GGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCTACAATCGA
Found at i:54421 original size:59 final size:59
Alignment explanation
Indices: 54275--55926 Score: 2377
Period size: 59 Copynumber: 28.2 Consensus size: 59
54265 TCCACTTTTT
* * * **
54275 AGTCCTCAAAGAGCAGG-CTACCTTTTCCTTCTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCGGGAC-GCCTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* *
54336 AGTCCTCAAAGAGCAGGACACCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
54395 AGTCCTTAAAGAGCAGGACGCATTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
54454 AGTCCTCAAATAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
54513 AGTGCTCAAATAGCGGGATGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
54572 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTAAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
54631 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGTCCACACAAGTTGGTGGCAGCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
54690 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
54749 AGTCCTCAAAGAGCGGGATGCCTTTTCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
54808 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
54867 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGTCCACACAAGTTGGTGGCAGCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
54926 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
54985 AGTCCTCAAAGAGCGGGATGCCTTTTCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
55044 AATCCTCAAAGAGCGGGACGCCTTTTCTTTAAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
55103 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGTCCACACAAGTTGGTGGCAGCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
55162 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
55221 AGTCCTCAAAGAGCGGGATGCCTTTTCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
55280 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGGACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
55339 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTAGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
55398 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
** * * *
55457 AGTCCTCAAAGAGCAAGATGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCGCCTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * * * *
55516 AGTCCTCAAATAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTGT
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACCTT-C
* * * * * **
55577 AGTCC-CTAAGGAGCAGGACACC-TTTC----AAAGGCCGCACAAGTTGGTGGCATTTTCC
1 AGTCCTC-AAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* *
55632 AGTCCTCAAAGAGCAGGACACC---TC--TTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* * * * * *
55687 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACGAGTTGGTTGCACTTTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCAC-CTTC
* * * **
55748 AGTCCCCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* * *
55803 AGTCCTCAAAGAGCAGGAC-AC----CTTTTAAAGCCAACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* * *
55858 AGTCTTCAAAGAGCAGGACGCC-TTTC----AAAGCCCACACGAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* *
55913 AGTCTTTAAAGAGC
1 AGTCCTCAAAGAGC
55927 ATGATGCCTT
Statistics
Matches: 1467, Mismatches: 99, Indels: 56
0.90 0.06 0.03
Matches are distributed among these distances:
51 1 0.00
53 2 0.00
54 4 0.00
55 204 0.14
56 6 0.00
58 2 0.00
59 1100 0.75
60 65 0.04
61 82 0.06
62 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (59 bp):
AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
Found at i:56828 original size:19 final size:19
Alignment explanation
Indices: 56804--56854 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
56794 TTTCAGTGAT
*
56804 TTGTATTGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
56823 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
56842 TTGTATCGATACA
1 TTGTATCGATACA
56855 ATGTATCGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:56930 original size:21 final size:21
Alignment explanation
Indices: 56886--56942 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
56876 GCCAAGGAAA
*
56886 TGTATCGATACAT-TTTTCTG
1 TGTATCGATACATCTATTCTG
* *
56906 TGTATCGATATATCTATTCTT
1 TGTATCGATACATCTATTCTG
56927 TGTATCGATACATCTA
1 TGTATCGATACATCTA
56943 GGAAGTTTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 12 0.38
21 20 0.62
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (21 bp):
TGTATCGATACATCTATTCTG
Found at i:59346 original size:51 final size:51
Alignment explanation
Indices: 59289--59405 Score: 156
Period size: 51 Copynumber: 2.4 Consensus size: 51
59279 AATTCTCCGC
59289 AATCGGGGATA-TCCCAACTCCGATTTTATTT-TCAAAACA-CTAATTTTCTAT
1 AATCGGGGATACT-CCAACTCCGATTTTATTTCT-AAAACATC-AATTTTCTAT
59340 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAA-TTT-T-T
1 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTCTAT
*
59388 CATCGGGGATACTCCAAC
1 AATCGGGGATACTCCAAC
59406 CCTGTTAATC
Statistics
Matches: 62, Mismatches: 1, Indels: 9
0.86 0.01 0.12
Matches are distributed among these distances:
48 18 0.29
49 1 0.02
50 3 0.05
51 37 0.60
52 3 0.05
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (51 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTCTAT
Found at i:59430 original size:27 final size:27
Alignment explanation
Indices: 59387--59463 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 27
59377 CATCAATTTT
*
59387 TCATCGGGGATACTCCAACCCTGTTAA
1 TCATCGGGGATACTCCAACCCCGTTAA
*
59414 TCATCGGGGATTA-TCCAACCCCGTTATTT
1 TCATCGGGGA-TACTCCAACCCCGTTA--A
*
59443 TCA-AGGGGATACTCCAACCCC
1 TCATCGGGGATACTCCAACCCC
59464 CGGCTTTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 24 0.56
28 16 0.37
29 3 0.07
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (27 bp):
TCATCGGGGATACTCCAACCCCGTTAA
Found at i:59586 original size:79 final size:80
Alignment explanation
Indices: 59416--59595 Score: 242
Period size: 79 Copynumber: 2.3 Consensus size: 80
59406 CCTGTTAATC
* *
59416 ATCGGGGATTA-TCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCCGGCTTTATTTCTAAA
1 ATCGGGGA-TACTCCAACCCCGTTATCTCCAAGGGGATACTCCAACCCCCGGCTTTATTTCTAAA
* *
59480 ATATTAATTTCTCATA
65 ATATCAATTTCTCACA
* * *
59496 ATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAA-CCCCGGTTTTATTTC-CAAA
1 ATCGGGGATACTCCAACCCCGTTATCTCCAAGGGGATACTCCAACCCCCGGCTTTATTTCTAAAA
59559 TCATCAATTT-TCCACA
66 T-ATCAATTTCT-CACA
59575 ATCGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
59596 GCTTTATTTT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
78 5 0.06
79 47 0.52
80 38 0.42
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCCGTTATCTCCAAGGGGATACTCCAACCCCCGGCTTTATTTCTAAAA
TATCAATTTCTCACA
Found at i:59587 original size:51 final size:51
Alignment explanation
Indices: 59529--59696 Score: 203
Period size: 52 Copynumber: 3.3 Consensus size: 51
59519 ATCTCCGAGG
* * *
59529 GGATACTCCAACCCCGGTTTTATTTCCAAATCATCAATTTTCCACAATCGG
1 GGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCACAATCGA
* * ** *
59580 GGATACTCCAACCCCGGCTTTATTTTCAAAACACCAATTTTCCTTTAATCAA
1 GGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCC-ACAATCGA
* * *
59632 GGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAA-CTGA
1 GGATACTCCAACCCCGGTTTTATTTCC-AAAACACCAATTTTCCACAATC-GA
59684 GGATACTCCAACC
1 GGATACTCCAACC
59697 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
51 40 0.41
52 42 0.43
53 15 0.15
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.30
Consensus pattern (51 bp):
GGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCACAATCGA
Found at i:59803 original size:290 final size:284
Alignment explanation
Indices: 59277--59884 Score: 785
Period size: 290 Copynumber: 2.1 Consensus size: 284
59267 TTTTAGTTTC
* * * * *
59277 TCAATTCTCCGCAATCGGGGATA-TCCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATA
1 TCAATTTTCCACAATCGGGGATACT-CCAACCCCGACTTTATTTTCAAAACACCAATTTTCTATA
** * * * *
59341 ATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAAC
65 ATCAAGGATACTCCAACTCCGATTTTATTTCAAAAACACCAATTTTTCAACGAGGATACTCCAAC
** *
59406 CCTGTTAATCATCGGGGATTATCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCCGGCTTT
130 CCTGTTAATCATCGGGGATTATCCAACCCCGTTACCTCCAAGGGGATACTCCAACCCCCGGCTTT
* *
59471 ATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACT
195 ATTCCGAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACT
*
59536 CCAACCCCGGTTTTATTTCCAAATCA
260 CCAACCCCGATTTT-TTTCCAAATCA
* *
59562 TCAATTTTCCACAATCGGGGATACTCCAACCCCGGCTTTATTTTCAAAACACCAATTTTCCTTTA
1 TCAATTTTCCACAATCGGGGATACTCCAACCCCGACTTTATTTTCAAAACACCAATTTT-CTATA
59627 ATCAAGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAACTGAGGATACTC
65 ATCAAGGATACTCCAACTCCGATTTTATTT-CAAAAACACCAATTTTT--CAAC-GAGGATACTC
* * *
59692 CAA-CCTCGTTATTTCTTCGGGGA-TACTCCAACCCCGTTACCTCCGAGGGGATACTCCAA-CCC
126 CAACCCT-GTTA-ATCATCGGGGATTA-TCCAACCCCGTTACCTCCAAGGGGATACTCCAACCCC
* * * *
59754 CGGCTTTATTCCGAAAATATTGATTTCTCATAATTGGGGATACTCCAACCTCGTTATTTCCGAGG
188 CGGCTTTATTCCGAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATCTCCGAGG
* * *
59819 GGATACTCCAATCCCGATTTTTTTTCTAATCA
253 GGATACTCCAACCCCGATTTTTTTCCAAATCA
* * * *
59851 TCGA-TTTCTTATAACCGGGGATACTCCAACCCCG
1 TCAATTTTC-CACAATCGGGGATACTCCAACCCCG
59885 TTATTTTTAA
Statistics
Matches: 280, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
285 51 0.18
286 33 0.12
287 15 0.05
288 4 0.01
289 40 0.14
290 99 0.35
291 38 0.14
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.32
Consensus pattern (284 bp):
TCAATTTTCCACAATCGGGGATACTCCAACCCCGACTTTATTTTCAAAACACCAATTTTCTATAA
TCAAGGATACTCCAACTCCGATTTTATTTCAAAAACACCAATTTTTCAACGAGGATACTCCAACC
CTGTTAATCATCGGGGATTATCCAACCCCGTTACCTCCAAGGGGATACTCCAACCCCCGGCTTTA
TTCCGAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATCTCCGAGGGGATACTC
CAACCCCGATTTTTTTCCAAATCA
Found at i:59887 original size:78 final size:78
Alignment explanation
Indices: 59709--59890 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 78
59699 GTTATTTCTT
** *
59709 CGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTCCGAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTCC-AAAATAT
* *
59774 TGATTTCTCATAAT
65 CGATTTCTCATAAC
* * * * * * *
59788 TGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAATCCCGATTTTTTTTC-TAATCAT
1 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTCCAAAAT-AT
*
59852 CGATTTCTTATAAC
65 CGATTTCTCATAAC
59866 CGGGGATACTCCAACCCCGTTATTT
1 CGGGGATACTCCAACCCCGTTATTT
59891 TTAAGGGGAC
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
77 3 0.03
78 36 0.41
79 48 0.55
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (78 bp):
CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTCCAAAATATC
GATTTCTCATAAC
Found at i:70299 original size:10 final size:10
Alignment explanation
Indices: 70283--70376 Score: 100
Period size: 10 Copynumber: 8.8 Consensus size: 10
70273 GCATCTTCCG
70283 CAAAAAAAAA
1 CAAAAAAAAA
70293 -AAAAAAAAA
1 CAAAAAAAAA
*
70302 CAAAACAAAA
1 CAAAAAAAAA
70312 CAAAAAAAGAGA
1 CAAAAAAA-A-A
*
70324 CCAAAAAAACA
1 -CAAAAAAAAA
70335 CAAAAAAAACA
1 CAAAAAAAA-A
70346 CAAAAAAAAA
1 CAAAAAAAAA
70356 CAAATAAACAAA
1 CAAA-AAA-AAA
70368 CAACAAAAA
1 CAA-AAAAA
70377 GGGTCCGGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
9 9 0.12
10 28 0.39
11 16 0.22
12 10 0.14
13 9 0.12
ACGTcount: A:0.82, C:0.15, G:0.02, T:0.01
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:70376 original size:44 final size:45
Alignment explanation
Indices: 70283--70376 Score: 111
Period size: 44 Copynumber: 2.1 Consensus size: 45
70273 GCATCTTCCG
* * *
70283 CAAAAAAAAAAAAAAAAAACAAAACAAAACAAAAAAAGAGACCAA
1 CAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAAAACAGAACAA
* * * *
70328 -AAAAACACAAAAAAAACACAAAAAAAAACAAATAAACA-AACAA
1 CAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAAAACAGAACAA
70371 CAAAAA
1 CAAAAA
70377 GGGTCCGGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
43 4 0.10
44 37 0.90
ACGTcount: A:0.82, C:0.15, G:0.02, T:0.01
Consensus pattern (45 bp):
CAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAAAACAGAACAA
Found at i:71827 original size:29 final size:28
Alignment explanation
Indices: 71740--72063 Score: 324
Period size: 28 Copynumber: 11.3 Consensus size: 28
71730 TCGTTGGTTA
*
71740 TGGCATCATTTCCAAAGCCCACAAGTTAG
1 TGGCATC-TTTCCAAAGCCCACAAGTCAG
* * * *
71769 TGGCAACCTTCAAAAGCCCACAAGTTAG
1 TGGCATCTTTCCAAAGCCCACAAGTCAG
*
71797 TGGCATCATTTCCAAAGCCCACAACTCAG
1 TGGCATC-TTTCCAAAGCCCACAAGTCAG
*
71826 TGGCATCATTTCCAAAGCCCACAACTCAG
1 TGGCATC-TTTCCAAAGCCCACAAGTCAG
* * *
71855 TGGCAACTTTCAAAAGCCCACAAGTCAA
1 TGGCATCTTTCCAAAGCCCACAAGTCAG
*
71883 TGGCATCTTTTCCAAAGCCCACAAGTCAA
1 TGGCATC-TTTCCAAAGCCCACAAGTCAG
* * *
71912 TGGCAACCTTCAAAAGCCCACAAGTCAG
1 TGGCATCTTTCCAAAGCCCACAAGTCAG
*
71940 TGGCATCTTTTCCAAAGCCCATAAGTCAG
1 TGGCATC-TTTCCAAAGCCCACAAGTCAG
* * * * *
71969 TGGCAACCTTCAAAAGCCCATAAGTTAG
1 TGGCATCTTTCCAAAGCCCACAAGTCAG
* * * *
71997 TGGCACCCTTTTTCAAAACCCACAAATCAG
1 TGGCA-TC-TTTCCAAAGCCCACAAGTCAG
* * * * *
72027 TGGCAACCTTCAAAAGTCCACAAGTCCG
1 TGGCATCTTTCCAAAGCCCACAAGTCAG
72055 TGGCATCTT
1 TGGCATCTT
72064 CTTCCTTTTA
Statistics
Matches: 246, Mismatches: 44, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
28 117 0.48
29 110 0.45
30 19 0.08
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (28 bp):
TGGCATCTTTCCAAAGCCCACAAGTCAG
Found at i:71828 original size:57 final size:57
Alignment explanation
Indices: 71748--72068 Score: 383
Period size: 57 Copynumber: 5.6 Consensus size: 57
71738 TATGGCATCA
* * * * * * *
71748 TTTCCAAAGCCCACAAGTTAGTGGCAAC-CTTCAAAAGCCCACAAGTTAGTGGCATC
1 TTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCAAC
* * * *
71804 ATTTCCAAAGCCCACAACTCAGTGGCATCATTTCCAAAGCCCACAACTCAGTGGCAAC
1 -TTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCAAC
* *
71862 TTTCAAAAGCCCACAAGTCAATGGCATCTTTTCCAAAGCCCACAAGTCAATGGCAAC
1 TTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCAAC
* *
71919 CTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCATAAGTCAGTGGCAAC
1 TTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCAAC
* * * * * * *
71976 CTTCAAAAGCCCATAAGTTAGTGGCACCCTTTTTCAAAACCCACAAATCAGTGGCAAC
1 TTTCAAAAGCCCACAAGTCAGTGGCA-TCTTTTCCAAAGCCCACAAGTCAGTGGCAAC
* * *
72034 CTTCAAAAGTCCACAAGTCCGTGGCATCTTCTTCC
1 TTTCAAAAGCCCACAAGTCAGTGGCATCTT-TTCC
72069 TTTTAAGCCC
Statistics
Matches: 230, Mismatches: 31, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
57 156 0.68
58 74 0.32
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (57 bp):
TTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCAAC
Found at i:71887 original size:86 final size:85
Alignment explanation
Indices: 71740--72063 Score: 371
Period size: 86 Copynumber: 3.8 Consensus size: 85
71730 TCGTTGGTTA
* *
71740 TGGCATCATTTCCAAAGCCCACAAGTTAGTGGCAACCTTCAAAAGCCCACAAGTTAGTGGCATCA
1 TGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCATC-
*
71805 TTTCCAAAGCCCACAACTCAG
65 TTTCCAAAGCCCACAAGTCAG
* * *
71826 TGGCATCATTTCCAAAGCCCACAACTCAGTGGCAACTTTCAAAAGCCCACAAGTCAATGGCATCT
1 TGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCATC-
*
71891 TTTCCAAAGCCCACAAGTCAA
65 TTTCCAAAGCCCACAAGTCAG
* * * * * * * *
71912 TGGCAAC-CTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCATAAGTCAGTGGCAAC
1 TGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAAC-CTTCAAAAGCCCACAAGTCAGTGGCATC
* * * *
71976 CTTCAAAAGCCCATAAGTTAG
65 TTTCCAAAGCCCACAAGTCAG
* * * * * * *
71997 TGGCACCCTTTTTCAAAACCCACAAATCAGTGGCAACCTTCAAAAGTCCACAAGTCCGTGGCATC
1 TGGCA-TCATTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCATC
72062 TT
65 TT
72064 CTTCCTTTTA
Statistics
Matches: 199, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
85 45 0.23
86 132 0.66
87 22 0.11
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (85 bp):
TGGCATCATTTCCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCATCT
TTCCAAAGCCCACAAGTCAG
Found at i:72113 original size:32 final size:32
Alignment explanation
Indices: 72040--72129 Score: 117
Period size: 32 Copynumber: 2.8 Consensus size: 32
72030 CAACCTTCAA
* * *
72040 AAGTCCACAAGTCCGTGGCATCTTCTTCCTTTT
1 AAGTCCACAACTCCATGGCACCTT-TTCCTTTT
* * *
72073 AAGCCCACAACTCTATGGCACCTTTTCTTTTT
1 AAGTCCACAACTCCATGGCACCTTTTCCTTTT
72105 AAGTCCACAACTCCATGGCACCTTT
1 AAGTCCACAACTCCATGGCACCTTT
72130 AAGTCCAATA
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 30 0.61
33 19 0.39
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.33
Consensus pattern (32 bp):
AAGTCCACAACTCCATGGCACCTTTTCCTTTT
Found at i:72224 original size:35 final size:34
Alignment explanation
Indices: 72170--72259 Score: 117
Period size: 35 Copynumber: 2.6 Consensus size: 34
72160 TATTTGCACC
* * *
72170 TTTTCTTTTTTAAGTCCACAACTTCGTGGCACTCA
1 TTTTC-TTTTTAAGCCCACAACTCCATGGCACTCA
*
72205 TTTTCTTTTGTAAGCCCACAACTCCATGGCACTCT
1 TTTTCTTTT-TAAGCCCACAACTCCATGGCACTCA
*
72240 TTTTCCTTTTAAGCCCACAA
1 TTTTCTTTTTAAGCCCACAA
72260 GTCAGTGGCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 15 0.31
35 34 0.69
ACGTcount: A:0.21, C:0.29, G:0.10, T:0.40
Consensus pattern (34 bp):
TTTTCTTTTTAAGCCCACAACTCCATGGCACTCA
Found at i:72258 original size:34 final size:33
Alignment explanation
Indices: 72177--72276 Score: 110
Period size: 35 Copynumber: 2.9 Consensus size: 33
72167 ACCTTTTCTT
* * * *
72177 TTTTAAGTCCACAACTTCGTGGCACTCATTTTCT
1 TTTTAAGCCCACAAC-TCATGGCACTCTTTTTCC
72211 TTTGTAAGCCCACAACTCCATGGCACTCTTTTTCC
1 TTT-TAAGCCCACAACT-CATGGCACTCTTTTTCC
* *
72246 TTTTAAGCCCACAAGTCAGTGGCACCCTTTT
1 TTTTAAGCCCACAACTCA-TGGCACTCTTTT
72277 CAAAAGCCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
33 2 0.04
34 27 0.47
35 28 0.49
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.36
Consensus pattern (33 bp):
TTTTAAGCCCACAACTCATGGCACTCTTTTTCC
Found at i:72285 original size:30 final size:28
Alignment explanation
Indices: 72250--72319 Score: 95
Period size: 30 Copynumber: 2.4 Consensus size: 28
72240 TTTTCCTTTT
*
72250 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTCAGTGGCAACC--TTCAA
*
72280 AAGCCCACAAGTTAGTGGCAACCTTCAA
1 AAGCCCACAAGTCAGTGGCAACCTTCAA
*
72308 AAGCACACAAGT
1 AAGCCCACAAGT
72320 TGGTGGCGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 16 0.43
30 21 0.57
ACGTcount: A:0.36, C:0.30, G:0.17, T:0.17
Consensus pattern (28 bp):
AAGCCCACAAGTCAGTGGCAACCTTCAA
Found at i:72316 original size:28 final size:29
Alignment explanation
Indices: 72250--72326 Score: 102
Period size: 28 Copynumber: 2.7 Consensus size: 29
72240 TTTTCCTTTT
* *
72250 AAGCCCACAAGTCAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTTAGTGGCAACC-TTTCAA
72280 AAGCCCACAAGTTAGTGGCAACC-TTCAA
1 AAGCCCACAAGTTAGTGGCAACCTTTCAA
* *
72308 AAGCACACAAGTTGGTGGC
1 AAGCCCACAAGTTAGTGGC
72327 GTCTTCTTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 22 0.51
30 21 0.49
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (29 bp):
AAGCCCACAAGTTAGTGGCAACCTTTCAA
Found at i:72433 original size:49 final size:49
Alignment explanation
Indices: 72354--72519 Score: 160
Period size: 49 Copynumber: 3.4 Consensus size: 49
72344 ATATCGCTGG
* * * * * *
72354 CCTTGAATTAGCATATTGGCACCTTTATCTTTAAGACCAATGTCCCTAA
1 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGACCAATGTCACTGA
* * *
72403 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCACTGGT
1 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGACCAATGTCACT-GA
* * * * *
72453 CC-TGAATCAGTATATTGGCA-C--CATCTCTAAGACCAATGTCGCTGG
1 CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGACCAATGTCACTGA
*
72498 CCTTGAATCAGCGCATTGGCAT
1 CCTTGAATCAGCACATTGGCAT
72520 AAGCCTAATA
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
45 3 0.03
46 33 0.35
48 1 0.01
49 56 0.59
50 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (49 bp):
CCTTGAATCAGCACATTGGCATCTTCATCTTTAAGACCAATGTCACTGA
Found at i:72515 original size:95 final size:97
Alignment explanation
Indices: 72331--72519 Score: 249
Period size: 95 Copynumber: 1.9 Consensus size: 97
72321 GGTGGCGTCT
* * * *
72331 TCTTCTAAGTCTAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCTTTAAGACCAATG
1 TCTTCTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACC--TATCTCTAAGACCAATG
72396 TCCCTAACCTTGAATCAGCACATTGGCATCTTCA
64 TCCCTAACCTTGAATCAGCACATTGGCATCTTCA
*
72430 TCTT-TAAGTCCAATATCACTGGTCC-TGAATCAGTATATTGGCACC-ATCTCTAAGACCAATGT
1 TCTTCTAAGTCCAATATCACTGG-CCTTGAATCAGCATATTGGCACCTATCTCTAAGACCAATGT
* ** *
72492 CGCTGGCCTTGAATCAGCGCATTGGCAT
65 CCCTAACCTTGAATCAGCACATTGGCAT
72520 AAGCCTAATA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
95 40 0.50
98 34 0.43
99 6 0.08
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.32
Consensus pattern (97 bp):
TCTTCTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTATCTCTAAGACCAATGTC
CCTAACCTTGAATCAGCACATTGGCATCTTCA
Found at i:72591 original size:87 final size:85
Alignment explanation
Indices: 72441--72605 Score: 222
Period size: 87 Copynumber: 1.9 Consensus size: 85
72431 CTTTAAGTCC
*
72441 AATATCACTGGTCCTGAATCAGTATATTGGCACCATCTCTAAGACCAATGTCGCTGGCCTTGAAT
1 AATATCACTGGTCCTGAATCAGGATATTGGCACCATCTCTAAGACCAATGTCGCTGGCCTTGAAT
*
72506 CAGCGCATTGGCATAAGCCT
66 CAGCACATTGGCATAAGCCT
* * * * * * *
72526 AATATCGCTGGTCTTGATTTAGGATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCTTTGA
1 AATATCACTGGTCCTGAATCAGGATATTGGCACC--ATCTCTAAGACCAATGTCGCTGGCCTTGA
*
72591 ATCAGCATATTGGCA
64 ATCAGCACATTGGCA
72606 CCTTTGTCAT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 29 0.43
87 39 0.57
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31
Consensus pattern (85 bp):
AATATCACTGGTCCTGAATCAGGATATTGGCACCATCTCTAAGACCAATGTCGCTGGCCTTGAAT
CAGCACATTGGCATAAGCCT
Found at i:72603 original size:48 final size:50
Alignment explanation
Indices: 72530--72660 Score: 169
Period size: 50 Copynumber: 2.7 Consensus size: 50
72520 AAGCCTAATA
* * * *
72530 TCGCTGGTCTTGATTTAGGATATTGGCACC-TTGTC-T-TTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTT-AGACCAATG
* *
72578 TCGCTGGCTTTGAATCAGCATATTGGCACCTTTGTCATCTTAGTCCAATG
1 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTAGACCAATG
*
72628 TCGCTGGCCTTGAATCAGCATATTGGCATCTTT
1 TCGCTGGCCTTGAATCAGCATATTGGCACCTTT
72661 AACATTTCTC
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
48 25 0.35
49 5 0.07
50 40 0.56
51 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (50 bp):
TCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTAGACCAATG
Found at i:73514 original size:19 final size:19
Alignment explanation
Indices: 73490--73552 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
73480 AACAAGTAGC
73490 TGTATCGATACATAAGTAT
1 TGTATCGATACATAAGTAT
73509 TGTATCGATAC---A--A-
1 TGTATCGATACATAAGTAT
*
73522 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTAT
73541 TGTATCGATACA
1 TGTATCGATACA
73553 ATGTATCGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
16 2 0.05
19 23 0.62
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATAAGTAT
Found at i:73527 original size:13 final size:13
Alignment explanation
Indices: 73509--73533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73499 ACATAAGTAT
73509 TGTATCGATACAA
1 TGTATCGATACAA
73522 TGTATCGATACA
1 TGTATCGATACA
73534 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:73527 original size:32 final size:32
Alignment explanation
Indices: 73490--73560 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
73480 AACAAGTAGC
73490 TGTATCGATACATAAGTATTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
*
73522 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
73554 TGTATCG
1 TGTATCG
73561 CTACGAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:75161 original size:13 final size:13
Alignment explanation
Indices: 75143--75168 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75133 TACACCAAGT
75143 ATGTATCGATACA
1 ATGTATCGATACA
75156 ATGTATCGATACA
1 ATGTATCGATACA
75169 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:75166 original size:32 final size:33
Alignment explanation
Indices: 75125--75188 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
75115 TAGCCAAACT
**
75125 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
75157 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
75189 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:77421 original size:21 final size:21
Alignment explanation
Indices: 77388--77437 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
77378 TTGCAAGTTG
*
77388 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
77410 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
77431 AAATAAA
1 AAATAAA
77438 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:88783 original size:13 final size:13
Alignment explanation
Indices: 88765--88789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88755 CATAAAATGT
88765 TGTATCGATACAA
1 TGTATCGATACAA
88778 TGTATCGATACA
1 TGTATCGATACA
88790 TATTTTTCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:88787 original size:33 final size:32
Alignment explanation
Indices: 88745--88813 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 32
88735 TTCAACGATT
88745 TGTATCGATACATAAAATGTT-GTATCGATACAA
1 TGTATCGATACAT--AATGTTCGTATCGATACAA
* *
88778 TGTATCGATACATATTTTTCGTATCGATACAA
1 TGTATCGATACATAATGTTCGTATCGATACAA
88810 TGTA
1 TGTA
88814 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 4 0.12
32 16 0.48
33 13 0.39
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAATGTTCGTATCGATACAA
Found at i:88870 original size:13 final size:13
Alignment explanation
Indices: 88852--88876 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
88842 ATTACTCACA
88852 TGTATCGATACAT
1 TGTATCGATACAT
88865 TGTATCGATACA
1 TGTATCGATACA
88877 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:88940 original size:51 final size:52
Alignment explanation
Indices: 88885--89004 Score: 199
Period size: 52 Copynumber: 2.3 Consensus size: 52
88875 CACTGATCTT
*
88885 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
88936 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
88988 TGTATCAATACATGCAG
1 TGTATCGATACATGCAG
89005 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
51 19 0.29
52 43 0.66
53 3 0.05
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:97206 original size:31 final size:31
Alignment explanation
Indices: 97168--97347 Score: 231
Period size: 31 Copynumber: 5.7 Consensus size: 31
97158 AAATACCTTT
*
97168 TCAAAGTCCATGACTCAGTGGCAATCTCTTC
1 TCAAAGTCCACGACTCAGTGGCAATCTCTTC
*
97199 TCAAAGTCCACGACTCAGTGGC-ATCCTTTTC
1 TCAAAGTCCACGACTCAGTGGCAAT-CTCTTC
* **
97230 TTCAAAGTCCATGACTCAGTGGCAATCTCAGC
1 -TCAAAGTCCACGACTCAGTGGCAATCTCTTC
*
97262 TCAAAGTCCACGACTCAGTGGCATTCTCTTC
1 TCAAAGTCCACGACTCAGTGGCAATCTCTTC
*
97293 TCAAAGTCCACGACGCAGTGGC-ATC-CTTC
1 TCAAAGTCCACGACTCAGTGGCAATCTCTTC
97322 TCTTTAAAGTCCACGACTCAGTGGCA
1 TC---AAAGTCCACGACTCAGTGGCA
97348 TTTTTTCTTT
Statistics
Matches: 129, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
29 6 0.05
30 4 0.03
31 74 0.57
32 43 0.33
33 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (31 bp):
TCAAAGTCCACGACTCAGTGGCAATCTCTTC
Found at i:97238 original size:63 final size:62
Alignment explanation
Indices: 97167--97356 Score: 260
Period size: 63 Copynumber: 3.0 Consensus size: 62
97157 CAAATACCTT
97167 TTCAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCCTTTTC
1 TTCAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCAT-CTTTTC
** *
97230 TTCAAAGTCCATGACTCAGTGGCAATCTCAGCTCAAAGTCCACGACTCAGTGGCATTCTCTTC
1 TTCAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCA-TCTTTTC
* * *
97293 -TCAAAGTCCACGACGCAGTGGC-ATC-CTTCTCTTTAAAGTCCACGACTCAGTGGCATTTTTTC
1 TTCAAAGTCCATGACTCAGTGGCAATCTCTTCTC---AAAGTCCACGACTCAGTGGCATCTTTTC
97355 TT
1 TT
97357 TTAAAGCCCA
Statistics
Matches: 113, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
60 4 0.04
61 3 0.03
62 25 0.22
63 80 0.71
64 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (62 bp):
TTCAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTC
Found at i:97331 original size:94 final size:94
Alignment explanation
Indices: 97168--97347 Score: 306
Period size: 94 Copynumber: 1.9 Consensus size: 94
97158 AAATACCTTT
* * *
97168 TCAAAGTCCATGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCCTTTTCTTC
1 TCAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACGCAGTGGCATCCTTCTCTTC
*
97233 AAAGTCCATGACTCAGTGGCAATCTCAGC
66 AAAGTCCACGACTCAGTGGCAATCTCAGC
* *
97262 TCAAAGTCCACGACTCAGTGGCATTCTCTTCTCAAAGTCCACGACGCAGTGGCATCCTTCTCTTT
1 TCAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACGCAGTGGCATCCTTCTCTTC
97327 AAAGTCCACGACTCAGTGGCA
66 AAAGTCCACGACTCAGTGGCA
97348 TTTTTTCTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 80 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (94 bp):
TCAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACGCAGTGGCATCCTTCTCTTC
AAAGTCCACGACTCAGTGGCAATCTCAGC
Found at i:97403 original size:33 final size:34
Alignment explanation
Indices: 97324--97904 Score: 614
Period size: 33 Copynumber: 17.4 Consensus size: 34
97314 CATCCTTCTC
* * * *
97324 TTTAAAGTCCACGACTCAGTGGCA--TTTTTTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
97356 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
97390 TTT-AAGTCCACAACTCTGTGGCA-C-----CCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
97417 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
97451 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCG
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
97479 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
97512 TTTAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
97545 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C--TTTTTCCT
97582 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
97616 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C--TTTTTCCT
97653 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
97687 TTGAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
97721 TTTAAAGCCCACAACTCCGTGGCACCTTATTCC-
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * * *
97754 GTTAAAGCCCACAATTCCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
97788 CTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
97821 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* * * *
97857 TTT-AAGTCCACAACTTCGTGGCATCTTTCTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT-TTCCT
*
97891 TCCTAAAGCCCACA
1 T-TTAAAGCCCACA
97905 CAAGTCGGTG
Statistics
Matches: 464, Mismatches: 50, Indels: 66
0.80 0.09 0.11
Matches are distributed among these distances:
27 28 0.06
28 19 0.04
32 22 0.05
33 152 0.33
34 127 0.27
35 39 0.08
36 23 0.05
37 12 0.03
38 42 0.09
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
Found at i:97446 original size:27 final size:27
Alignment explanation
Indices: 97354--97575 Score: 120
Period size: 34 Copynumber: 7.2 Consensus size: 27
97344 GGCATTTTTT
97354 CTTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
1 CTTTT-AAGCCCACAACTCCGTGGCA-C-----C
* *
97388 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
*
97415 CTTTTAAAGCCCACAATTCCGTGGCACTTTTTTC
1 CTTTT-AAGCCCACAACTCCGTGGCAC------C
* *
97449 ATCTTTAAGTCCACAACTCCGTGGCACC
1 CT-TTTAAGCCCACAACTCCGTGGCACC
*
97477 CGTTTAAGCCCACAACTCCGTGGCACC
1 CTTTTAAGCCCACAACTCCGTGGCACC
97504 TTTTTCTTTTTAAAGCCCACAACTCCGTGGCACC
1 -----C-TTTT-AAGCCCACAACTCCGTGGCACC
* *
97538 TTTTTCTTTTAAAGCCCACAACTCTGTGGCACT
1 -----CTTTT-AAGCCCACAACTCCGTGGCACC
97571 CTTTT
1 CTTTT
97576 TTTCCTTTTC
Statistics
Matches: 159, Mismatches: 14, Indels: 36
0.76 0.07 0.17
Matches are distributed among these distances:
27 30 0.19
28 24 0.15
32 2 0.01
33 46 0.29
34 54 0.34
35 3 0.02
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (27 bp):
CTTTTAAGCCCACAACTCCGTGGCACC
Found at i:97555 original size:67 final size:67
Alignment explanation
Indices: 97319--97884 Score: 640
Period size: 67 Copynumber: 8.5 Consensus size: 67
97309 AGTGGCATCC
* * * * *
97319 TTCTCTTTAAAGTCCACGACTCAGTGGCA-TTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCT
*
97383 TG
66 TT
* * * * *
97385 TTCCTTTT-AAGTCCACAACTCTGTGGCACC-----CTTTTAAAGCCCACAATTCCGTGGCACTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCT
97444 TT
66 TT
* * *
97446 TTCATCTTT-AAGTCCACAACTCCGTGGCACC-----CGTTT-AAGCCCACAACTCCGTGGCACC
1 TTC-TTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACC
97504 TTT
65 TTT
*
97507 TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTC
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC-C
97572 TTTTT
65 --TTT
* *
97577 TTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACT
1 TT-CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC-
97642 CTTTTT
64 C--TTT
* *
97648 TTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTGAAAGCCCACAACTCCGTGGCACC
1 TT-CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACC
97713 TTT
65 TTT
* ** * *
97716 TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTATTCCGTTAAAGCCCACAATTCCGTGGCACTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCT
97781 TT
66 TT
* * * *
97783 TTCATCTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC-C
97848 TTT
65 TTT
* * * *
97851 TTCCCTTTT-AAGTCCACAACTTCGTGGCATCTTT
1 TT-CTTTTTAAAGCCCACAACTCCGTGGCACCTTT
97885 CTCCCTTCCT
Statistics
Matches: 441, Mismatches: 44, Indels: 28
0.86 0.09 0.05
Matches are distributed among these distances:
60 4 0.01
61 78 0.18
62 28 0.06
65 18 0.04
66 10 0.02
67 133 0.30
68 32 0.07
69 3 0.01
70 6 0.01
71 129 0.29
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (67 bp):
TTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCT
TT
Found at i:97930 original size:33 final size:31
Alignment explanation
Indices: 97887--97997 Score: 170
Period size: 32 Copynumber: 3.5 Consensus size: 31
97877 GCATCTTTCT
97887 CCCTTCCTAAAGCCCACACAAGTCGGTGGCAA
1 CCCTT-CTAAAGCCCACACAAGTCGGTGGCAA
*
97919 CCTTCTTCTAAAGCCCACACAAGTCGGTGGTAA
1 CC--CTTCTAAAGCCCACACAAGTCGGTGGCAA
97952 CCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
1 CCCTTCT-AAAGCCCACACAAGTCGGTGGCAA
97984 CCCTTCT-AAGCCCA
1 CCCTTCTAAAGCCCA
97998 ATATAGCTGG
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
30 7 0.09
31 5 0.07
32 32 0.43
33 27 0.36
34 3 0.04
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.19
Consensus pattern (31 bp):
CCCTTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:98112 original size:49 final size:49
Alignment explanation
Indices: 97990--98691 Score: 918
Period size: 49 Copynumber: 14.7 Consensus size: 49
97980 GCAACCCTTC
* * * *
97990 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATATT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* *
98042 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
98091 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
98134 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
98183 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
98226 TAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGT-AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
98275 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
98318 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
98367 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
98416 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
98464 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
98513 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
98561 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
98604 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
98656 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
98692 ACATCCTTTT
Statistics
Matches: 580, Mismatches: 40, Indels: 60
0.85 0.06 0.09
Matches are distributed among these distances:
43 155 0.27
44 1 0.00
45 3 0.01
47 3 0.01
48 92 0.16
49 251 0.43
50 3 0.01
52 72 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:98197 original size:92 final size:92
Alignment explanation
Indices: 98040--98700 Score: 950
Period size: 92 Copynumber: 7.0 Consensus size: 92
98030 CTTTTCCATA
* * * * *
98040 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
98105 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
98132 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
98197 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
98224 TTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 TTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
98288 GCTGGCCTTGAATCAGCACATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
* *
98316 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
*
98381 CTGGCCTTGACTCAGCACATTGGCACCTTCATC
66 CTGGCCTTGAATCAGCACATTGGCA----C--C
* * *
98414 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
*
98478 CTGGCCTTGACTCAGCACATTGGCACCTTCATC
66 CTGGCCTTGAATCAGCACATTGGCA----C--C
* * * * *
98511 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA-CCTCACCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
98575 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * *
98602 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATG
*
98667 TAGCTGGCCTTGAATCAGCACATTGACATCC
63 TAGCTGGCCTTGAATCAGCACATTGGCA-CC
98698 TTT
1 TTT
98701 TTCATCATCT
Statistics
Matches: 530, Mismatches: 26, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
91 38 0.07
92 262 0.49
93 1 0.00
94 1 0.00
95 42 0.08
96 6 0.01
97 141 0.27
98 39 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:101306 original size:13 final size:13
Alignment explanation
Indices: 101288--101312 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101278 CATAAAATGT
101288 TGTATCGATACAA
1 TGTATCGATACAA
101301 TGTATCGATACA
1 TGTATCGATACA
101313 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:101310 original size:33 final size:33
Alignment explanation
Indices: 101268--101337 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
101258 TTCAACGATT
101268 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
101301 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
101334 TGTA
1 TGTA
101338 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:101395 original size:13 final size:13
Alignment explanation
Indices: 101377--101401 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101367 ATTACTCACA
101377 TGTATCGATACAT
1 TGTATCGATACAT
101390 TGTATCGATACA
1 TGTATCGATACA
101402 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101465 original size:51 final size:52
Alignment explanation
Indices: 101410--101529 Score: 208
Period size: 52 Copynumber: 2.3 Consensus size: 52
101400 CACTGATCTT
*
101410 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
101461 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
101513 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
101530 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
51 19 0.29
52 44 0.67
53 3 0.05
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:104675 original size:13 final size:13
Alignment explanation
Indices: 104655--104692 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
104645 AAAACCTAGA
*
104655 TGTATCGATACAT
1 TGTATCGATACAC
*
104668 TTTATCGATACAC
1 TGTATCGATACAC
104681 TGTATCGATACA
1 TGTATCGATACA
104693 AGGGGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:105159 original size:20 final size:20
Alignment explanation
Indices: 105134--105175 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
105124 GGCAACCTCA
*
105134 CCAGGTCGAGACCGGCACTC
1 CCAGGTCGAGACCGACACTC
*
105154 CCAGGTCGCGACCGACACTC
1 CCAGGTCGAGACCGACACTC
105174 CC
1 CC
105176 CACACTCACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.45, G:0.26, T:0.10
Consensus pattern (20 bp):
CCAGGTCGAGACCGACACTC
Found at i:107199 original size:13 final size:13
Alignment explanation
Indices: 107181--107205 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107171 ATAATGCACA
107181 GTATCGATACATT
1 GTATCGATACATT
107194 GTATCGATACAT
1 GTATCGATACAT
107206 GACCATTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:107315 original size:32 final size:33
Alignment explanation
Indices: 107274--107341 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
107264 CCTTAACTGT
107274 TTGTATCAATACAT-A-CAAGATGTATCGATACA
1 TTGTATCAATACATGACCAA-ATGTATCGATACA
*
107306 TTGTATCAATACATGACCAAATGTTTCGATACA
1 TTGTATCAATACATGACCAAATGTATCGATACA
107339 TTG
1 TTG
107342 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 16 0.48
34 3 0.09
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (33 bp):
TTGTATCAATACATGACCAAATGTATCGATACA
Found at i:110643 original size:286 final size:285
Alignment explanation
Indices: 110125--110688 Score: 939
Period size: 286 Copynumber: 2.0 Consensus size: 285
110115 ATTGAGTTGT
*
110125 GCCAACTTCGTGTCTTGCTTGTTCCACTCATCTTCTCCTTTAGGCACAAAGACTTTGCCAACTTT
1 GCCAACTTCGTGTCTTGCTCGTTCCACTCATCTTCTCCTTTAGGCACAAAGACTTTGCCAACTTT
* *
110190 CTTCATTGGAAACGAGGTGCATTCATGATTATCTTCCAAACTTTGCAATCATTGGCTTAAACAAA
66 CTTCATTGGAAACGAGGTCCATTCATGATTATCTTCCAAACTTCGCAATCATTGGCTTAAACAAA
* *
110255 TAGTCTCATTCTTGTCCTCCAATACGAGTAGTTGTCTCCATTGAAGAGTGGTGGTCTCACGGTGG
131 TAGTCTCATTCTTGCCCTCCAAAACGAGTAGTTGTCTCCATTGAAGAGTGGTGGTCTCACGGTGG
110320 AATGGCCTTCTACTCCAATACCATTTGAATAGGTCTCAAAGGCCATGAGACATACTTATTCTTGG
196 AATGGCCTTCTACTCCAATACCATTTGAATAGGTCTCAAAGGCCATGAGACATACTTATTCTTGG
110385 CTTGAAACTTTAACCATTTGAATGC
261 CTTGAAACTTTAACCATTTGAATGC
*
110410 GCCAACTTCGTGTCTTGCTCGTTCCACTCATCTTCTCCTTTAGGCACAAAGACTTTGTCAACTTT
1 GCCAACTTCGTGTCTTGCTCGTTCCACTCATCTTCTCCTTTAGGCACAAAGACTTTGCCAACTTT
* * * **
110475 CTTCATTGGAACACGAGGTCCATTCATGATTATCTTCCAAACTTCGTAATCGTTGGCTTGAATGA
66 CTTCATTGGAA-ACGAGGTCCATTCATGATTATCTTCCAAACTTCGCAATCATTGGCTTAAACAA
* * * * *
110540 ATAGTCTCATTTTTGCCCTCTAAAATGGGTAGTTGTCTCTATTGAAGAGTGGTGGTCTCACGGTG
130 ATAGTCTCATTCTTGCCCTCCAAAACGAGTAGTTGTCTCCATTGAAGAGTGGTGGTCTCACGGTG
** * *
110605 GAATGGCCTTCTACTCTGATAGCATTTGAATGGGTCTCAAAGGCCATGAGACATACTTATTCTTG
195 GAATGGCCTTCTACTCCAATACCATTTGAATAGGTCTCAAAGGCCATGAGACATACTTATTCTTG
110670 GCTTGAAACTTTAACCATT
260 GCTTGAAACTTTAACCATT
110689 GCTGTATTTT
Statistics
Matches: 258, Mismatches: 20, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
285 74 0.29
286 184 0.71
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (285 bp):
GCCAACTTCGTGTCTTGCTCGTTCCACTCATCTTCTCCTTTAGGCACAAAGACTTTGCCAACTTT
CTTCATTGGAAACGAGGTCCATTCATGATTATCTTCCAAACTTCGCAATCATTGGCTTAAACAAA
TAGTCTCATTCTTGCCCTCCAAAACGAGTAGTTGTCTCCATTGAAGAGTGGTGGTCTCACGGTGG
AATGGCCTTCTACTCCAATACCATTTGAATAGGTCTCAAAGGCCATGAGACATACTTATTCTTGG
CTTGAAACTTTAACCATTTGAATGC
Found at i:111558 original size:22 final size:22
Alignment explanation
Indices: 111530--111575 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
111520 AATGTTAGTG
111530 ATGAATAGTGATATATCGATAC
1 ATGAATAGTGATATATCGATAC
*
111552 ATGAATAGTGATGTATCGATAC
1 ATGAATAGTGATATATCGATAC
111574 AT
1 AT
111576 TAACAGCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (22 bp):
ATGAATAGTGATATATCGATAC
Found at i:111586 original size:22 final size:22
Alignment explanation
Indices: 111543--111586 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
111533 AATAGTGATA
* *
111543 TATCGATACATGAATAGTGATG
1 TATCGATACATGAACAGCGATG
*
111565 TATCGATACATTAACAGCGATG
1 TATCGATACATGAACAGCGATG
111587 AACAGTGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (22 bp):
TATCGATACATGAACAGCGATG
Found at i:112692 original size:13 final size:13
Alignment explanation
Indices: 112665--112747 Score: 75
Period size: 13 Copynumber: 6.3 Consensus size: 13
112655 TTATGCCTAG
*
112665 AAAAAG-AACAAA
1 AAAAAGAAAGAAA
*
112677 AAAATGAAAGAAA
1 AAAAAGAAAGAAA
112690 AAAAAGAAAGAAAA
1 AAAAAGAAAG-AAA
112704 AAACAAGAAA-AACA
1 AAA-AAGAAAGAA-A
112718 AAAAA-AAAGGAAA
1 AAAAAGAAA-GAAA
112731 ACAAAA-AAAGAAA
1 A-AAAAGAAAGAAA
112744 AAAA
1 AAAA
112748 TCGAACAAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
12 11 0.18
13 25 0.41
14 19 0.31
15 6 0.10
ACGTcount: A:0.83, C:0.05, G:0.11, T:0.01
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:112723 original size:30 final size:30
Alignment explanation
Indices: 112687--112745 Score: 59
Period size: 31 Copynumber: 1.9 Consensus size: 30
112677 AAAATGAAAG
*
112687 AAAAAAAA-GAAAGAAAAAAACA-AGAAAAACA
1 AAAAAAAAGGAAA-AAAAAAAAAGA-AAAA-CA
*
112718 AAAAAAAAGGAAAACAAAAAAAGAAAAA
1 AAAAAAAAGGAAAAAAAAAAAAGAAAAA
112746 AATCGAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
31 19 0.79
32 5 0.21
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (30 bp):
AAAAAAAAGGAAAAAAAAAAAAGAAAAACA
Found at i:112731 original size:16 final size:16
Alignment explanation
Indices: 112687--112739 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
112677 AAAATGAAAG
112687 AAAAAAAA-GAAAGA-A
1 AAAAAAAAGGAAA-ACA
* *
112702 AAAAACAAGAAAAACA
1 AAAAAAAAGGAAAACA
112718 AAAAAAAAGGAAAACA
1 AAAAAAAAGGAAAACA
112734 AAAAAA
1 AAAAAA
112740 GAAAAAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 8 0.25
16 24 0.75
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGGAAAACA
Found at i:112747 original size:16 final size:15
Alignment explanation
Indices: 112687--112747 Score: 70
Period size: 15 Copynumber: 4.1 Consensus size: 15
112677 AAAATGAAAG
*
112687 AAAAAAAAGAAAGAA
1 AAAAAAAAGAAAAAA
*
112702 AAAAACAAGAAAAACA
1 AAAAAAAAGAAAAA-A
*
112718 AAAAAAAAG-GAAAA
1 AAAAAAAAGAAAAAA
*
112732 CAAAAAAAGAAAAAA
1 AAAAAAAAGAAAAAA
112747 A
1 A
112748 TCGAACAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 9 0.24
15 19 0.51
16 9 0.24
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAA
Found at i:114057 original size:87 final size:85
Alignment explanation
Indices: 113910--114080 Score: 195
Period size: 87 Copynumber: 2.0 Consensus size: 85
113900 TGCCCAACCA
* *
113910 AGATTCTTTCCTATTCTGTTTGACGTATGGTTACCACCCTAATCATACTCTTCTCATTTCAAATT
1 AGATTCTTTCCTATTATGTTTGACGTATGGTTACCACCCTAATCATAATCTTCTCATTTC--ATT
*
113975 TGATATATGGTTACCACCCTGT
64 TGACATATGGTTACCACCCTGT
* * * *
113997 AGATTCTTTTC-ATTATGATTTGATGTATGGTTACCACCCTAGTCA-AAT-TTGCTTCCTTTCAT
1 AGATTCTTTCCTATTATG-TTTGACGTATGGTTACCACCCTAATCATAATCTT-C-TCATTTCAT
* *
114059 TTGACGTATTGTTACCACCCTG
63 TTGACATATGGTTACCACCCTG
114081 ATTAAACTCT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
85 23 0.32
86 8 0.11
87 41 0.57
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (85 bp):
AGATTCTTTCCTATTATGTTTGACGTATGGTTACCACCCTAATCATAATCTTCTCATTTCATTTG
ACATATGGTTACCACCCTGT
Found at i:114189 original size:88 final size:88
Alignment explanation
Indices: 114096--114387 Score: 320
Period size: 88 Copynumber: 3.3 Consensus size: 88
114086 ACTCTTTTTA
* * **
114096 CTTCCTGTCTGACGTATGGTTACTATCCTGGTCAGATTCTTCTCATTTCGATTTGGGGTATGGTT
1 CTTCCTGTCTGACGTATGGTTACCAACCTGGTCAGATTCTTCTCATTTCGATTTGGCATATGGTT
*
114161 ACCACCTTGGTCAAATATGCCTC
66 ACCACCCTGGTCAAATATGCCTC
* * * * * *
114184 TTTCCTGTCTGACGTATGGTTACCACCCTGGCCAAATTCTTCTCATTTTGATTTGGCATATGGCT
1 CTTCCTGTCTGACGTATGGTTACCAACCTGGTCAGATTCTTCTCATTTCGATTTGGCATATGGTT
* * *
114249 ATCC-CCCTAGTCAAATCTACCTC
66 A-CCACCCTGGTCAAATATGCCTC
* * * * * * * * *
114272 CTTCTTGTCTAACATATGGTTACCAACCTAGTTAGATTATTTTCA-TTCTGATTTGACATATAGT
1 CTTCCTGTCTGACGTATGGTTACCAACCTGGTCAGATTCTTCTCATTTC-GATTTGGCATATGGT
*
114336 TACCACCCTGGTCAAATTTGCCTC
65 TACCACCCTGGTCAAATATGCCTC
*
114360 CTT-CTGTTTGACGTATGGTTACCAACCT
1 CTTCCTGTCTGACGTATGGTTACCAACCT
114388 AGTCCAACTC
Statistics
Matches: 166, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
87 25 0.15
88 139 0.84
89 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.38
Consensus pattern (88 bp):
CTTCCTGTCTGACGTATGGTTACCAACCTGGTCAGATTCTTCTCATTTCGATTTGGCATATGGTT
ACCACCCTGGTCAAATATGCCTC
Found at i:114246 original size:44 final size:44
Alignment explanation
Indices: 113928--114615 Score: 160
Period size: 44 Copynumber: 15.7 Consensus size: 44
113918 TCCTATTCTG
* ** * * **
113928 TTTGACGTATGGTTACCACCCTAATCATACTCTTCTCATTTCAAA
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTT-TGA
*** * * *
113973 TTTGATATATGGTTACCACCCT-GT-AGATTCTTTTCATTATGA
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGA
** * *
114015 TTTGATGTATGGTTACCACCCTAGTCAAATTTGCTTC-C--TTTCA
1 TTTGGCGTATGGTTACCACCCTGGTCAAA-TT-CTTCTCATTTTGA
* * * * * * * *
114058 TTTGACGTATTGTTACCACCCTGATTAAACTCTTTTTACTTCCTG-
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCA-TT-TTGA
* * * * * *
114103 TCTGACGTATGGTTACTATCCTGGTCAGATTCTTCTCATTTCGA
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGA
* *
114147 TTTGGGGTATGGTTACCACCTTGGTCAAATATGC--CTC-TTTCCTG-
1 TTTGGCGTATGGTTACCACCCTGGTCAAAT-T-CTTCTCATTT--TGA
* * *
114191 TCTGACGTATGGTTACCACCCTGGCCAAATTCTTCTCATTTTGA
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGA
* * * * *
114235 TTTGGCATATGGCTATCC-CCCTAGTCAAA-TCTACCTCCTTCTTG-
1 TTTGGCGTATGGTTA-CCACCCTGGTCAAATTCT-TCTCATT-TTGA
* ** * * * * * * * *
114279 TCTAACATATGGTTACCAACCTAGTTAGATTATTTTCATTCTGA
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGA
* * * * * *
114323 TTTGACATATAGTTACCACCCTGGTCAAATT-TGCCTCCTTCTG-
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCT-TCTCATTTTGA
* * * * * * * *
114366 TTTGACGTATGGTTACCAACCTAGTCCAACTCTTCTTACTTTAGC
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCA-TTTTGA
* *** *
114411 TCTAATGTATGGTTACCACCCTGGTTAAATT-TTCCTC-TCTTCT-A
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTT-CTCAT-TT-TGA
* * * * ** * *
114455 TTTGACATTTTGTTACCACGTTGGTCAAACTCTTCTC-TTTTCTA
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTTT-GA
* *** * * * * * *
114499 TCTAATGTATGGTTACTACCGTGGTCAGATTCTTTTTATTCTGA
1 TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGA
*** * *
114543 TTTGATTTATGGTTACCACCCTGGTTAAATCTGCTT-TC-TTCCT-A
1 TTTGGCGTATGGTTACCACCCTGGTCAAAT-T-CTTCTCATT-TTGA
* * *
114587 TTTGACATAGGGTTACCACCCTGGTCAAA
1 TTTGGCGTATGGTTACCACCCTGGTCAAA
114616 CGATTTGTAT
Statistics
Matches: 467, Mismatches: 138, Indels: 77
0.68 0.20 0.11
Matches are distributed among these distances:
41 3 0.01
42 25 0.05
43 85 0.18
44 248 0.53
45 98 0.21
46 8 0.02
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (44 bp):
TTTGGCGTATGGTTACCACCCTGGTCAAATTCTTCTCATTTTGA
Found at i:114246 original size:132 final size:130
Alignment explanation
Indices: 113929--114246 Score: 311
Period size: 132 Copynumber: 2.4 Consensus size: 130
113919 CCTATTCTGT
* * ** *
113929 TTGACGTATGGTTACCACCCTAATCATACTCTTCTCATTTCAAATTTGATATATGGTTACCACCC
1 TTGACGTATGGTTACCACCCTGATCAAACTCTTCTCATTT-TGATTTGACATATGGTTACCACCC
* * * * *
113994 TGTAGATTCTTTTCATTATGATTTGATGTATGGTTACCACCCTAGTCAAATTTGCTTCCTTTCAT
65 TGTAGATTCTTCTCATTATGATTTGAGGTATGGTTACCACCCTAGTCAAATATGCCTCCTTTCCT
114059 -
130 G
* * * * * * * * *
114059 TTGACGTATTGTTACCACCCTGATTAAACTCTTTTTACTTCCTG-TCTGACGTATGGTTACTATC
1 TTGACGTATGGTTACCACCCTGATCAAACTCTTCTCA-TT-TTGATTTGACATATGGTTACCACC
* * *
114123 CTGGTCAGATTCTTCTCATT-TCGATTTGGGGTATGGTTACCACCTTGGTCAAATATGCCT-CTT
64 CT-GT-AGATTCTTCTCATTAT-GATTTGAGGTATGGTTACCACCCTAGTCAAATATGCCTCCTT
114186 TCCTG
126 TCCTG
** * *
114191 TCTGACGTATGGTTACCACCCTGGCCAAATTCTTCTCATTTTGATTTGGCATATGG
1 T-TGACGTATGGTTACCACCCTGATCAAACTCTTCTCATTTTGATTTGACATATGG
114247 CTATCCCCCT
Statistics
Matches: 147, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
130 48 0.33
131 13 0.09
132 57 0.39
133 29 0.20
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.41
Consensus pattern (130 bp):
TTGACGTATGGTTACCACCCTGATCAAACTCTTCTCATTTTGATTTGACATATGGTTACCACCCT
GTAGATTCTTCTCATTATGATTTGAGGTATGGTTACCACCCTAGTCAAATATGCCTCCTTTCCTG
Found at i:114505 original size:88 final size:87
Alignment explanation
Indices: 114334--114525 Score: 210
Period size: 88 Copynumber: 2.2 Consensus size: 87
114324 TTGACATATA
* * *
114334 GTTACCACCCTGGTCAAATTTGCCTCCTTCTGTTTGACGTATGGTTACCAACCTAGTCCAACTCT
1 GTTACCACCCTGGTCAAATTTGCCTCCTTCTATTTGACATATGGTTACCAACCTAGTCAAACTCT
114399 TCTTACTTTAGCTCTAATGTATG
66 TCTTACTTTA-CTCTAATGTATG
* * * * * *
114422 GTTACCACCCTGGTTAAATTTTCCTCTCTTCTATTTGACATTTTGTTACC-ACGTTGGTCAAACT
1 GTTACCACCCTGGTCAAATTTGCCTC-CTTCTATTTGACATATGGTTACCAAC-CTAGTCAAACT
*
114486 CTTC-T-CTTTTCTATCTAATGTATG
64 CTTCTTACTTTAC--TCTAATGTATG
* *
114510 GTTACTACCGTGGTCA
1 GTTACCACCCTGGTCA
114526 GATTCTTTTT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
86 1 0.01
87 4 0.05
88 51 0.59
89 31 0.36
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.41
Consensus pattern (87 bp):
GTTACCACCCTGGTCAAATTTGCCTCCTTCTATTTGACATATGGTTACCAACCTAGTCAAACTCT
TCTTACTTTACTCTAATGTATG
Found at i:118307 original size:52 final size:52
Alignment explanation
Indices: 118218--118342 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
118208 ATATAAAAAG
* * *
118218 TTGCTTGCATGTATCGATACATTTAATAGTGTGTCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
118270 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
118322 TTTCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
118343 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:118355 original size:52 final size:51
Alignment explanation
Indices: 118218--118362 Score: 193
Period size: 52 Copynumber: 2.8 Consensus size: 51
118208 ATATAAAAAG
* *
118218 TTGCTTGCATGTATCGATACATTTAATAGTGTGTCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
118270 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
118322 TTTCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
118363 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 81 0.98
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:118369 original size:13 final size:13
Alignment explanation
Indices: 118351--118375 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118341 CAAAGATCAG
118351 TGTATCGATACAA
1 TGTATCGATACAA
118364 TGTATCGATACA
1 TGTATCGATACA
118376 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:118458 original size:13 final size:13
Alignment explanation
Indices: 118440--118464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118430 CAAAAAAATA
118440 TGTATCGATACAT
1 TGTATCGATACAT
118453 TGTATCGATACA
1 TGTATCGATACA
118465 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:119549 original size:49 final size:49
Alignment explanation
Indices: 119350--120033 Score: 821
Period size: 49 Copynumber: 14.6 Consensus size: 49
119340 GATGTCAACG
* *
119350 TGCTGATTCAAGGCCAGCCACATTGAACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAATA
* *
119402 TGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
119445 TACTGATTCAAGGCCAGCTACATTGGACTT----A-G-AGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
119488 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
119537 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
119580 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
119629 TGCTGATTCAAGGCCAGCTATATTGGGCTT----A-G-AGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
*
119672 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
119721 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
119770 TGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
119819 TGCTGATTCAAAGCCAG-TGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATGAAGGTGCCAATA
119862 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* * *
119911 TGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
119954 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
* *
120003 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
120034 GAAGGGTTGC
Statistics
Matches: 554, Mismatches: 45, Indels: 69
0.83 0.07 0.10
Matches are distributed among these distances:
43 232 0.42
44 2 0.00
45 2 0.00
47 4 0.01
48 4 0.01
49 283 0.51
52 27 0.05
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATA
Found at i:119573 original size:92 final size:92
Alignment explanation
Indices: 119389--120038 Score: 990
Period size: 92 Copynumber: 7.1 Consensus size: 92
119379 TAAAGATGGA
* * * *
119389 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTAC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
119448 TGATTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
*
119475 AGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
119540 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
119567 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
119632 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* *
119659 AGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
119724 TGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
66 TGATTCAAGGCCAGCTATATTGGAC-T-----T
* * * *
119757 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
119822 TGATTCAAAGCCAG-TGATATTGGACTT
66 TGATTCAAGGCCAGCT-ATATTGGACTT
119849 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
119914 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
119941 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
120006 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCTATATTGGACTT
120033 AGAAGG
1 A-AAGG
120039 GTTGCCACCG
Statistics
Matches: 513, Mismatches: 36, Indels: 23
0.90 0.06 0.04
Matches are distributed among these distances:
86 40 0.08
90 1 0.00
92 385 0.75
93 5 0.01
97 2 0.00
98 80 0.16
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTT
Found at i:119734 original size:141 final size:138
Alignment explanation
Indices: 119390--120033 Score: 864
Period size: 141 Copynumber: 4.6 Consensus size: 138
119380 AAAGATGGAA
*
119390 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTACTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
* *
119455 AGGCCAGCTACATTGGACTT----A-G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
66 AGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
119514 ACTTAAAGATG
131 ACTT--A-ATG
*
119525 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
* *
119590 AGGCCAGCTACATTGGACTTAAAGGTGAGGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
66 AGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
*
119655 GCTT-A-G
131 ACTTAATG
* *
119661 -AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGCT
* *
119725 GAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
60 GATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
119790 TATTGGACTTAATGGTG
125 TATTGGACTTAA---TG
*
119807 AAGGTGCCAATATGCTGATTCAAAGCCAG-TGATATTGGACTTAAAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCT-ATATTGGACTTAAAGGTGCCAATGTGCTGATTC
*
119871 AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTG
65 AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
119936 GACTT-A--
130 GACTTAATG
* * *
119942 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGCT
* *
120007 GATTCAAGGCCAGCTATATTGGGCTTA
60 GATTCAAGGCCAGCTACATTGGACTTA
120034 GAAGGGTTGC
Statistics
Matches: 456, Mismatches: 27, Indels: 46
0.86 0.05 0.09
Matches are distributed among these distances:
135 158 0.35
136 2 0.00
137 1 0.00
139 2 0.00
140 2 0.00
141 251 0.55
142 1 0.00
143 1 0.00
146 2 0.00
147 36 0.08
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (138 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
AGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
ACTTAATG
Found at i:120075 original size:33 final size:33
Alignment explanation
Indices: 120033--120152 Score: 183
Period size: 32 Copynumber: 3.7 Consensus size: 33
120023 TATTGGGCTT
*
120033 AGAAGGGTTGCCACCGACTTGTGTGGACTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
120066 AGAATGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
120098 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
120131 AAGAA-GG-TGCCACGGACTTGTG
1 -AGAAGGGTTGCCACCGACTTGTG
120153 GACTTAAAAG
Statistics
Matches: 81, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
32 45 0.56
33 32 0.40
34 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.35, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:120114 original size:65 final size:62
Alignment explanation
Indices: 120026--120201 Score: 193
Period size: 65 Copynumber: 2.9 Consensus size: 62
120016 CCAGCTATAT
120026 TGGGCTTAGAAGGGTTGCCACCGACTTGTGTGGACTTTAG-AGAATGGTTGCCACCGACTTGTG
1 TGGGCTTAGAAGGGTTGCCACCGACTTGTGTGGACTTTAGAAGAA-GG-TGCCACCGACTTGTG
* *
120089 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTGCCACGGAC-T-TG
1 TGGGC-TT-AGAAGGGTTGCCACCGACTTGTGTGGACTTTAGAAGAAGGTGCCACCGACTTGTG
* * * * * *
120151 TGGACTTA-AAAGGATGCCACGGAGTTGTG-GG-CTTTGAAAAGAAGGTGCCAC
1 TGGGCTTAGAAGGGTTGCCACCGACTTGTGTGGACTTT-AGAAGAAGGTGCCAC
120202 GGAGTCGTGG
Statistics
Matches: 101, Mismatches: 8, Indels: 13
0.83 0.07 0.11
Matches are distributed among these distances:
57 4 0.04
58 16 0.16
59 17 0.17
60 1 0.01
61 2 0.02
62 6 0.06
63 6 0.06
64 11 0.11
65 34 0.34
66 4 0.04
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.26
Consensus pattern (62 bp):
TGGGCTTAGAAGGGTTGCCACCGACTTGTGTGGACTTTAGAAGAAGGTGCCACCGACTTGTG
Found at i:120169 original size:27 final size:27
Alignment explanation
Indices: 120134--120222 Score: 90
Period size: 27 Copynumber: 3.2 Consensus size: 27
120124 GCTTTAGAAG
*
120134 AAGG-TGCCACGGACTTGTGGACTTAA
1 AAGGATGCCACGGAGTTGTGGACTTAA
*
120160 AAGGATGCCACGGAGTTGTGGGCTTTGAA
1 AAGGATGCCACGGAGTTGTGGAC-TT-AA
* * *
120189 AAGAAGGTGCCACGGAGTCGTGGACTTAG
1 AAG--GATGCCACGGAGTTGTGGACTTAA
120218 AAGGA
1 AAGGA
120223 AAACGAGTGC
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 17 0.33
28 2 0.04
29 9 0.18
30 2 0.04
31 17 0.33
ACGTcount: A:0.28, C:0.16, G:0.36, T:0.20
Consensus pattern (27 bp):
AAGGATGCCACGGAGTTGTGGACTTAA
Found at i:120282 original size:31 final size:30
Alignment explanation
Indices: 120164--120405 Score: 200
Period size: 31 Copynumber: 7.7 Consensus size: 30
120154 ACTTAAAAGG
* * *
120164 ATGCCACGGAGTTGTGGGCTTTGA-AAAGAA
1 ATGCCACTGAGTCGTGGACTTTGAGAAA-AA
* * *
120194 GGTGCCACGGAGTCGTGGACTTAGAAGGAAAACGA
1 -ATGCCACTGAGTCGTGGACTTTG-A-GAAAA--A
* * *
120229 GTGCCAC-GAAGTTGTGGGCTTTGAAGAAAAA
1 ATGCCACTG-AGTCGTGGACTTTG-AGAAAAA
* *
120260 ATGCCACTGAGTCATGGACTTTGAGACAAA
1 ATGCCACTGAGTCGTGGACTTTGAGAAAAA
* *
120290 ATGCCACTGAGTCGTGGACTTTAAAGGAAAAG
1 ATGCCACTGAGTCGTGGACTTT-GA-GAAAAA
* *
120322 ATGCCACTGAGTCGTGGACTTTGAGCAGAGA
1 ATGCCACTGAGTCGTGGACTTTGAG-AAAAA
* *
120353 TTGCCACTGAGTCGTGGACTTTGAGAAGAGA
1 ATGCCACTGAGTCGTGGACTTTGAGAA-AAA
*
120384 TTGCCACTGAGTCGTGGACTTT
1 ATGCCACTGAGTCGTGGACTTT
120406 AAAAAGGTAT
Statistics
Matches: 178, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
30 29 0.16
31 90 0.51
32 28 0.16
33 7 0.04
34 23 0.13
35 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (30 bp):
ATGCCACTGAGTCGTGGACTTTGAGAAAAA
Found at i:120371 original size:93 final size:96
Alignment explanation
Indices: 120196--120408 Score: 269
Period size: 93 Copynumber: 2.2 Consensus size: 96
120186 GAAAAGAAGG
* * *
120196 TGCCACGGAGTCGTGGAC-TTAGAAGGAAAACGAGTGCCACGAAGTTGTGGGCTTTGAAGAAAAA
1 TGCCACTGAGTCGTGGACTTTA-AAGGAAAACGAGTGCCACGAAGTCGTGGACTTTGAAGAAAAA
120260 ATGCCACTGAGTCATGGACTTTGAGACA-A-AA
65 ATGCCACTGAGTCATGGACTTTGAGA-AGAGAA
* *
120291 TGCCACTGAGTCGTGGACTTTAAAGGAAAA-GA-TGCCACTG-AGTCGTGGACTTTG-AGCAGAG
1 TGCCACTGAGTCGTGGACTTTAAAGGAAAACGAGTGCCAC-GAAGTCGTGGACTTTGAAG-AAAA
* * *
120352 ATTGCCACTGAGTCGTGGACTTTGAGAAGAGAT
64 AATGCCACTGAGTCATGGACTTTGAGAAGAGAA
120385 TGCCACTGAGTCGTGGACTTTAAA
1 TGCCACTGAGTCGTGGACTTTAAA
120409 AAGGTATTTG
Statistics
Matches: 105, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
92 3 0.03
93 46 0.44
94 28 0.27
95 25 0.24
96 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (96 bp):
TGCCACTGAGTCGTGGACTTTAAAGGAAAACGAGTGCCACGAAGTCGTGGACTTTGAAGAAAAAA
TGCCACTGAGTCATGGACTTTGAGAAGAGAA
Found at i:122995 original size:20 final size:19
Alignment explanation
Indices: 122967--123038 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 19
122957 ACCCTACAAA
* *
122967 GTATTGATACATATCCAGAT
1 GTATCGATACATATCCA-TT
* *
122987 GTATCGATACATTATGCTTT
1 GTATCGATACA-TATCCATT
* *
123007 GTATCGATACATGTTCATT
1 GTATCGATACATATCCATT
123026 GTATCGATACATA
1 GTATCGATACATA
123039 CTCAATTATA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
19 17 0.40
20 22 0.51
21 4 0.09
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (19 bp):
GTATCGATACATATCCATT
Found at i:123029 original size:19 final size:20
Alignment explanation
Indices: 122986--123037 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
122976 CATATCCAGA
*
122986 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCAT
123006 TGTATCGATACATGT-T-CAT
1 TGTATCGATACAT-TATGCAT
123025 TGTATCGATACAT
1 TGTATCGATACAT
123038 ACTCAATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 15 0.50
20 14 0.47
21 1 0.03
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATGCAT
Found at i:124610 original size:3 final size:3
Alignment explanation
Indices: 124602--124627 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
124592 CTTATGCCAA
124602 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
124628 TGGAACGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:125304 original size:21 final size:21
Alignment explanation
Indices: 125280--125321 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
125270 TAATATTATT
* * *
125280 GAAAATAAATTAAGTGAATTA
1 GAAAAGAAAATAAATGAATTA
125301 GAAAAGAAAATAAATGAATTA
1 GAAAAGAAAATAAATGAATTA
125322 AAAGAGACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (21 bp):
GAAAAGAAAATAAATGAATTA
Found at i:128752 original size:20 final size:20
Alignment explanation
Indices: 128727--128801 Score: 89
Period size: 20 Copynumber: 3.6 Consensus size: 20
128717 CATTGTTCAT
128727 GTATCGATACATTATGAATA
1 GTATCGATACATTATGAATA
* *
128747 GTATCGATACATCACTG-TTCA
1 GTATCGATACATTA-TGAAT-A
128768 TGTATCGATACATTATGAATA
1 -GTATCGATACATTATGAATA
*
128789 GTATCAATACATT
1 GTATCGATACATT
128802 GAGTCCAACG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
20 26 0.57
21 6 0.13
22 14 0.30
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
GTATCGATACATTATGAATA
Found at i:128773 original size:42 final size:42
Alignment explanation
Indices: 128714--128800 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
128704 CATCACTATT
* *
128714 CATCATTGTTCATGTATCGATACATTATGAATAGTATCGATA
1 CATCACTGTTCATGTATCGATACATTATGAATAGTATCAATA
128756 CATCACTGTTCATGTATCGATACATTATGAATAGTATCAATA
1 CATCACTGTTCATGTATCGATACATTATGAATAGTATCAATA
128798 CAT
1 CAT
128801 TGAGTCCAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (42 bp):
CATCACTGTTCATGTATCGATACATTATGAATAGTATCAATA
Found at i:128775 original size:22 final size:21
Alignment explanation
Indices: 128714--128780 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
128704 CATCACTATT
128714 CATCATTGTTCATGTATCGATA
1 CATCA-TGTTCATGTATCGATA
* *
128736 CATTATG--AATAGTATCGATA
1 CATCATGTTCAT-GTATCGATA
128756 CATCACTGTTCATGTATCGATA
1 CATCA-TGTTCATGTATCGATA
128778 CAT
1 CAT
128781 TATGAATAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 2 0.05
20 13 0.35
21 4 0.11
22 16 0.43
23 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (21 bp):
CATCATGTTCATGTATCGATA
Found at i:129596 original size:20 final size:20
Alignment explanation
Indices: 129571--129618 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
129561 CTAAGTGAAA
*
129571 TGTATCGATACAT-AGGACAT
1 TGTATCGATACATGAAGA-AT
129591 TGTATCGATACATGAAGAAT
1 TGTATCGATACATGAAGAAT
129611 TGTATCGA
1 TGTATCGA
129619 AATATTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAT
Found at i:141786 original size:20 final size:20
Alignment explanation
Indices: 141743--141815 Score: 112
Period size: 20 Copynumber: 3.7 Consensus size: 20
141733 ACATTATGCT
**
141743 TTGTATCGATACATGTTC-A
1 TTGTATCGATACATACTCAA
141762 TTGTATCGATACATACTCAA
1 TTGTATCGATACATACTCAA
*
141782 TTGTATCGATATATACTCAA
1 TTGTATCGATACATACTCAA
141802 TTGTATCGATACAT
1 TTGTATCGATACAT
141816 GAAACTGGCA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 16 0.33
20 33 0.67
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACATACTCAA
Found at i:141870 original size:20 final size:20
Alignment explanation
Indices: 141845--141897 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
141835 CTAAGTGAAA
*
141845 TGTATCGATACATG-GGACAT
1 TGTATCGATACATGAAGA-AT
*
141865 TGTATCGATACACGAAGAAT
1 TGTATCGATACATGAAGAAT
141885 TGTATCGATACAT
1 TGTATCGATACAT
141898 TATGCCTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAT
Found at i:143840 original size:161 final size:161
Alignment explanation
Indices: 143627--143934 Score: 406
Period size: 161 Copynumber: 1.9 Consensus size: 161
143617 TTCCATGTTT
* * * * *
143627 ATTATTATTTTTTAATCTTTTATATTCCTATGGGCATTCGTAAGGGTATAAAATATTTAAAAAAT
1 ATTATTATTTTTTAATCTTTTATATTCCTATGGCCATCCATAAGGGTATAAAAGATTTAAAAAAC
* * *
143692 GTTTCATATCCTTTCGGGCTTCCATTAAG-GTACGAAATGTTATTTTCGAAAGTAAATAAAATTA
66 CTTTCATATCCTTTCGGGCTTCCATT-AGTGTACGAAATGGTATTTTCGAAAATAAATAAAATTA
143756 AAGTAAATTAATA-TTTTCACGATAAATTTTA
130 AAGTAAATTAATACTTTTCACGATAAATTTTA
* * * *
143787 ATTATTTTTTTTCTAATCTTTTATATTCTTAAT-GCCATCCATAGGGGTATAAAAGATTTCAAAA
1 ATTATTATTTTT-TAATCTTTTATATTCCT-ATGGCCATCCATAAGGGTATAAAAGATTTAAAAA
* * * *
143851 ACCTTTCATTTTCTTTCGGGCTTCCATTAGTGTACGAAATGGTATTTTTGAAAATATATAAAATT
64 ACCTTTCATATCCTTTCGGGCTTCCATTAGTGTACGAAATGGTATTTTCGAAAATAAATAAAATT
* *
143916 AAATTGAATTAATACTTTT
129 AAAGTAAATTAATACTTTT
143935 GAGAAAAAAT
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
160 13 0.10
161 107 0.85
162 6 0.05
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (161 bp):
ATTATTATTTTTTAATCTTTTATATTCCTATGGCCATCCATAAGGGTATAAAAGATTTAAAAAAC
CTTTCATATCCTTTCGGGCTTCCATTAGTGTACGAAATGGTATTTTCGAAAATAAATAAAATTAA
AGTAAATTAATACTTTTCACGATAAATTTTA
Found at i:145206 original size:53 final size:54
Alignment explanation
Indices: 145143--145278 Score: 233
Period size: 53 Copynumber: 2.6 Consensus size: 54
145133 AGATTGCATA
* *
145143 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTA-GCAAATTT
1 GTATCGATACACACAAATATGTATCGATACAAGACATTGGCAGTACCCAAATTT
145196 GTATCGATACACAC-AATATGTATCGATACAAGACATTGGCAGTACCCAAATTT
1 GTATCGATACACACAAATATGTATCGATACAAGACATTGGCAGTACCCAAATTT
145249 GTATCGATACACA-AAATATGTATCGATACA
1 GTATCGATACACACAAATATGTATCGATACA
145279 TTGGTAGTAG
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
52 29 0.37
53 50 0.63
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.26
Consensus pattern (54 bp):
GTATCGATACACACAAATATGTATCGATACAAGACATTGGCAGTACCCAAATTT
Found at i:145219 original size:19 final size:18
Alignment explanation
Indices: 145189--145278 Score: 69
Period size: 19 Copynumber: 5.0 Consensus size: 18
145179 TTGGCAGTAG
*
145189 CAAATTTGTATCGATACA
1 CAAATATGTATCGATACA
145207 CACAATATGTATCGATACA
1 CA-AATATGTATCGATACA
* * ** *
145226 -AGACAT-TGGC-AGTACC
1 CAAATATGTATCGA-TACA
*
145242 CAAATTTGTATCGATACA
1 CAAATATGTATCGATACA
145260 CAAAATATGTATCGATACA
1 C-AAATATGTATCGATACA
145279 TTGGTAGTAG
Statistics
Matches: 53, Mismatches: 13, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
15 1 0.02
16 5 0.09
17 6 0.11
18 9 0.17
19 32 0.60
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (18 bp):
CAAATATGTATCGATACA
Found at i:145319 original size:10 final size:10
Alignment explanation
Indices: 145300--145330 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
145290 TAAATCTCAT
145300 TCACTGTTCA
1 TCACTGTTCA
*
145310 TCACTATTCA
1 TCACTGTTCA
145320 TCACTGTTCA
1 TCACTGTTCA
145330 T
1 T
145331 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:145375 original size:22 final size:22
Alignment explanation
Indices: 145318--145378 Score: 88
Period size: 21 Copynumber: 2.8 Consensus size: 22
145308 CATCACTATT
*
145318 CATCACTGTTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
* *
145340 CATCAC-CTTCATGTATTGATA
1 CATCACTATTCATGTATCGATA
145361 CATCACTATTCATGTATC
1 CATCACTATTCATGTATC
145379 ATTAAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 19 0.56
22 15 0.44
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.38
Consensus pattern (22 bp):
CATCACTATTCATGTATCGATA
Found at i:145426 original size:13 final size:13
Alignment explanation
Indices: 145408--145432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
145398 TCACTATTCA
145408 TGTATCGATACAG
1 TGTATCGATACAG
145421 TGTATCGATACA
1 TGTATCGATACA
145433 TCAAAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:150079 original size:13 final size:14
Alignment explanation
Indices: 150048--150085 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
150038 TATAGTACCC
150048 ATGTATCGATACAG
1 ATGTATCGATACAG
150062 A-GTATCGATACA-
1 ATGTATCGATACAG
*
150074 ATGTATTGATAC
1 ATGTATCGATAC
150086 TATGAACTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (14 bp):
ATGTATCGATACAG
Found at i:151985 original size:31 final size:32
Alignment explanation
Indices: 151927--151986 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
151917 CACCCAGATG
*
151927 TATCGATACATATTACTTTGTACTGATACAAT
1 TATCGATACATATTACATTGTACTGATACAAT
* *
151959 TATCGATACATGTT-CATTGTATTGATAC
1 TATCGATACATATTACATTGTACTGATAC
151987 GCACTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 12 0.48
32 13 0.52
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (32 bp):
TATCGATACATATTACATTGTACTGATACAAT
Found at i:157235 original size:13 final size:13
Alignment explanation
Indices: 157217--157242 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
157207 CAATTTTTTG
157217 TGTATCGATACAT
1 TGTATCGATACAT
157230 TGTATCGATACAT
1 TGTATCGATACAT
157243 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:157258 original size:32 final size:33
Alignment explanation
Indices: 157194--157260 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
157184 CGTTACAAGC
**
157194 CATTGTATCGATACAATTTTTTGTGTATCGATA
1 CATTGTATCGATACAATTACTTGTGTATCGATA
157227 CATTGTATCGATAC-A-TACTTGCTGTATCGATA
1 CATTGTATCGATACAATTACTTG-TGTATCGATA
157259 CA
1 CA
157261 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 4 0.13
32 13 0.42
33 14 0.45
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (33 bp):
CATTGTATCGATACAATTACTTGTGTATCGATA
Found at i:157307 original size:21 final size:21
Alignment explanation
Indices: 157281--157356 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
157271 CTGCCAAGAA
*
157281 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
157302 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
157322 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
157343 ATGTATCGATACAT
1 ATGTATCGATACAT
157357 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:157327 original size:20 final size:20
Alignment explanation
Indices: 157302--157374 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
157292 CATCTTTTTT
157302 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
157322 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
157343 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
157363 ATGTATCGATAC
1 ATGTATCGATAC
157375 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Done.