Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold80
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1499392
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.28
Warning! 217494 characters in sequence are not A, C, G, or T
File 3 of 8
Found at i:329819 original size:13 final size:13
Alignment explanation
Indices: 329801--329827 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
329791 ACAATTGTCC
329801 ATGTATCGATACA
1 ATGTATCGATACA
329814 ATGTATCGATACA
1 ATGTATCGATACA
329827 A
1 A
329828 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:330394 original size:22 final size:21
Alignment explanation
Indices: 330369--330441 Score: 55
Period size: 22 Copynumber: 3.5 Consensus size: 21
330359 AAGTTTTCGT
330369 TTTTCTCCCCCTTAACTAAAGA
1 TTTTCTCCCCCTTAA-TAAAGA
* *
330391 TTTTC-ACCTCTTAA-AAA-A
1 TTTTCTCCCCCTTAATAAAGA
**
330409 AATTCTCCCCCTTAATTAAAGCA
1 TTTTCTCCCCCTTAA-TAAAG-A
330432 -TTTCTCCCCC
1 TTTTCTCCCCC
330442 CTTTGTCAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
18 4 0.10
19 10 0.26
21 10 0.26
22 14 0.36
23 1 0.03
ACGTcount: A:0.29, C:0.33, G:0.03, T:0.36
Consensus pattern (21 bp):
TTTTCTCCCCCTTAATAAAGA
Found at i:331816 original size:13 final size:13
Alignment explanation
Indices: 331798--331826 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
331788 AAATAGTACC
331798 CAATGTATCGATA
1 CAATGTATCGATA
331811 CAATGTATCGATA
1 CAATGTATCGATA
331824 CAA
1 CAA
331827 GGAATGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:336366 original size:3 final size:3
Alignment explanation
Indices: 336353--336382 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
336343 CTTCATCCGA
*
336353 ATC ACC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
336383 TTCCTCTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (3 bp):
ATC
Found at i:338105 original size:19 final size:19
Alignment explanation
Indices: 338061--338133 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
338051 CTGTCAATCT
*
338061 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAC
*
338081 CATGTATCGATACAATGAG
1 CATGTATCGATACAATGAC
* *
338100 CATGTATCGATACAAAGCAT
1 CATGTATCGATACAATG-AC
*
338120 AATGTATCGATACA
1 CATGTATCGATACA
338134 TCTGGGTGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 18 0.38
20 29 0.62
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAC
Found at i:346037 original size:96 final size:97
Alignment explanation
Indices: 345874--346113 Score: 315
Period size: 96 Copynumber: 2.5 Consensus size: 97
345864 AAAAAAACGG
* ** * *
345874 GGTTGGAATATCCCCTCAAAGGAATAGGGTTAGAGTATCCCCGATAATGACAATTTAAGTCAGAA
1 GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATAATGACAATTTAAGACAGAA
*
345939 TAAGATTTGAA-TCTTGACAAGTTTAAAAGCGA
66 TAAGATTTAAACT-TTGACAAGTTTAAAAGCGA
* * *
345971 GGTTGGAGTATCCCCTCGGAGGAAT-GCGTTGGAGTGTCCCCGATGATGACAATTTAA-ACGAGA
1 GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATAATGACAATTTAAGAC-AGA
**
346034 ATAAGATTTAAACTTTGATGAGTTTAAAAGCGA
65 ATAAGATTTAAACTTTGACAAGTTTAAAAGCGA
* * *
346067 GGTTAGAGTATCCTCTCGGAAGAATAGGGTTGGAGTATCCCCGATAA
1 GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATAA
346114 ATAAAATTTT
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
95 1 0.01
96 81 0.66
97 41 0.33
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (97 bp):
GGTTGGAGTATCCCCTCGGAGGAATAGGGTTGGAGTATCCCCGATAATGACAATTTAAGACAGAA
TAAGATTTAAACTTTGACAAGTTTAAAAGCGA
Found at i:348182 original size:42 final size:42
Alignment explanation
Indices: 348056--348187 Score: 110
Period size: 42 Copynumber: 3.1 Consensus size: 42
348046 ACAAAGGATG
** * *
348056 AAGGATTTACCCGGGACTAAGCCAACAGGTAAACAAAGGAAAAAA
1 AAGGATTTACCTAGGACTAAGCCGACAGGTAAAC-AAGG--ATAA
* * * *
348101 AAGG-TTGACCTA-GATTGAA-CTGACAAGTCAAA-AATGGATAA
1 AAGGATTTACCTAGGACT-AAGCCGACAGGT-AAACAA-GGATAA
348142 AAGGATTTACCTAGGACTAAGCCGACAGGTAAACAAGGATAA
1 AAGGATTTACCTAGGACTAAGCCGACAGGTAAACAAGGATAA
348184 AAGG
1 AAGG
348188 GTTGACCAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
41 7 0.10
42 24 0.35
43 23 0.34
44 10 0.15
45 4 0.06
ACGTcount: A:0.45, C:0.15, G:0.23, T:0.16
Consensus pattern (42 bp):
AAGGATTTACCTAGGACTAAGCCGACAGGTAAACAAGGATAA
Found at i:348233 original size:84 final size:85
Alignment explanation
Indices: 347969--348277 Score: 275
Period size: 84 Copynumber: 3.6 Consensus size: 85
347959 AATCCAATTC
* * * ** * * * * *
347969 TAAACAGATTTACCTGGGACTAAGCTGATGGGTAGACAAAGGATGAAAGAGTTAACCAGGATTGA
1 TAAAAAGATTTACCTAGGACTAAGCCGACAGGTAAACAAAGGATAAAAGGGTTGACCAAGATTGA
* * *
348034 ATAGATAGGTCAACAAAGGA
66 ATTGACAAGTCAACAAAGGA
* * ** * * * *
348054 T-GAAGGATTTACCCGGGACTAAGCCAACAGGTAAACAAAGGAAAAAAAAGGTTGACCTAGATTG
1 TAAAAAGATTTACCTAGGACTAAGCCGACAGGTAAACAAAGG-ATAAAAGGGTTGACCAAGATTG
*
348118 AACTGACAAGTCAA-AAATGGA
65 AATTGACAAGTCAACAAA-GGA
* *
348139 TAAAAGGATTTACCTAGGACTAAGCCGACAGGTAAAC-AAGGATAAAAGGGTTGACCAAGCTTGA
1 TAAAAAGATTTACCTAGGACTAAGCCGACAGGTAAACAAAGGATAAAAGGGTTGACCAAGATTGA
**
348203 ATTGACAAGTCAACAAAAAA
66 ATTGACAAGTCAACAAAGGA
** ** * *
348223 TAAAAAGATTTA-CTCAGGACTAAGTTGATTGGTAAACAAAGAATAAAAAGGTTGA
1 TAAAAAGATTTACCT-AGGACTAAGCCGACAGGTAAACAAAGGATAAAAGGGTTGA
348278 TCGGGATTGA
Statistics
Matches: 180, Mismatches: 38, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
83 2 0.01
84 95 0.53
85 52 0.29
86 31 0.17
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.19
Consensus pattern (85 bp):
TAAAAAGATTTACCTAGGACTAAGCCGACAGGTAAACAAAGGATAAAAGGGTTGACCAAGATTGA
ATTGACAAGTCAACAAAGGA
Found at i:348305 original size:84 final size:84
Alignment explanation
Indices: 348059--348306 Score: 257
Period size: 84 Copynumber: 2.9 Consensus size: 84
348049 AAGGATGAAG
** * * *
348059 GATTTACCCGGGACTAAGCCAACAGGTAAACAAAGGAAAAAAAAGGTTGACCTAGATTGAACTGA
1 GATTTACCTAGGACTAAGCCGACAGGTAAACAAA-GAATAAAAAGGTTGACCAAGATTGAACTGA
** *
348124 CAAGTCAAAAATGGATAAAAG
65 CAAGTCAAAAA-AAATAAAAA
* * * *
348145 GATTTACCTAGGACTAAGCCGACAGGTAAAC-AAGGATAAAAGGGTTGACCAAGCTTGAATTGAC
1 GATTTACCTAGGACTAAGCCGACAGGTAAACAAAGAATAAAAAGGTTGACCAAGATTGAACTGAC
348209 AAGTCAACAAAAAATAAAAA
66 AAGTCAA-AAAAAATAAAAA
** ** * ** *
348229 GATTTA-CTCAGGACTAAGTTGATTGGTAAACAAAGAATAAAAAGGTTGATCGGGATTGAACTAA
1 GATTTACCT-AGGACTAAGCCGACAGGTAAACAAAGAATAAAAAGGTTGACCAAGATTGAACTGA
*
348293 CAGGTCAAAAAAAA
65 CAAGTCAAAAAAAA
348307 GATAAAAAAC
Statistics
Matches: 134, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
83 2 0.01
84 68 0.51
85 36 0.27
86 28 0.21
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (84 bp):
GATTTACCTAGGACTAAGCCGACAGGTAAACAAAGAATAAAAAGGTTGACCAAGATTGAACTGAC
AAGTCAAAAAAAATAAAAA
Found at i:348459 original size:46 final size:46
Alignment explanation
Indices: 348409--348551 Score: 119
Period size: 46 Copynumber: 3.1 Consensus size: 46
348399 GTGATAATCG
* *
348409 ATACAGTCAAACGA-GGATGAAAAGAA-TTTGACTAGGACTAACGCTA
1 ATACAGTCAAACAATGG-TGAAAA-AAGTTTGACCAGGACTAACGCTA
* * *
348455 ATACAATTAAACAATGGTGAAAAAAGTTTGACCAGGACTAACTCTA
1 ATACAGTCAAACAATGGTGAAAAAAGTTTGACCAGGACTAACGCTA
* ** * * * ** * *
348501 ATATAGTCAAGTAACGATGAAAAGAGTTCAACCAGGACTAATGCCA
1 ATACAGTCAAACAATGGTGAAAAAAGTTTGACCAGGACTAACGCTA
348547 ATACA
1 ATACA
348552 CTTAAATGAA
Statistics
Matches: 76, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
45 2 0.03
46 72 0.95
47 2 0.03
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (46 bp):
ATACAGTCAAACAATGGTGAAAAAAGTTTGACCAGGACTAACGCTA
Found at i:348634 original size:47 final size:45
Alignment explanation
Indices: 348583--348704 Score: 109
Period size: 47 Copynumber: 2.6 Consensus size: 45
348573 TTTAATCAAA
348583 TCCTAATGCTAATACAGTCAAACGAGGGAAAGAAGAGTTTGACTAGG
1 TCCTAATGCTAATACAGTCAAACGAGGGAAA-AA-AGTTTGACTAGG
** * * ** *
348630 TCCTAACACTAATACAGTTAAACAATAATGAAAAATGTTTGACTAGG
1 TCCTAATGCTAATACAGTCAAAC--GAGGGAAAAAAGTTTGACTAGG
* * * *
348677 TCCTAATGCCAATATAGTCCAATGAGGG
1 TCCTAATGCTAATACAGTCAAACGAGGG
348705 CAGAAAGAGT
Statistics
Matches: 56, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
45 2 0.04
47 47 0.84
48 2 0.04
49 5 0.09
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (45 bp):
TCCTAATGCTAATACAGTCAAACGAGGGAAAAAAGTTTGACTAGG
Found at i:349334 original size:34 final size:35
Alignment explanation
Indices: 349296--349362 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
349286 CCTTACAACA
349296 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
349330 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
349363 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:349859 original size:13 final size:13
Alignment explanation
Indices: 349841--349866 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
349831 CTATTTATGA
349841 TGTATCGATACAC
1 TGTATCGATACAC
349854 TGTATCGATACAC
1 TGTATCGATACAC
349867 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:350085 original size:20 final size:20
Alignment explanation
Indices: 350022--350092 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
350012 GCCAATGACC
**
350022 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
350042 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
350062 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
350082 TGTATCGATAC
1 TGTATCGATAC
350093 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:350158 original size:21 final size:21
Alignment explanation
Indices: 350132--350172 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
350122 GTCAACCTTG
350132 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
350153 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
350173 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:355422 original size:22 final size:23
Alignment explanation
Indices: 355391--355433 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
355381 AATGACAAAG
*
355391 CCACTTTCCTC-CCTCCTCATGA
1 CCACTATCCTCACCTCCTCATGA
*
355413 CCACTATCCTCACCTCTTCAT
1 CCACTATCCTCACCTCCTCAT
355434 AACTCATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.16, C:0.49, G:0.02, T:0.33
Consensus pattern (23 bp):
CCACTATCCTCACCTCCTCATGA
Found at i:356299 original size:27 final size:27
Alignment explanation
Indices: 356269--356349 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
356259 AAACAAAAAT
* * *
356269 GGGGAGAGAGGTTTTTGAAAATGGGAG
1 GGGGAGAGATGTTTTTGAAAAGGGGAA
356296 GGGGAGAGATGTTTTTGAAAAGGGGAA
1 GGGGAGAGATGTTTTTGAAAAGGGGAA
* *
356323 GGAGAGAGATGCTTTTGAAAAGGGGAA
1 GGGGAGAGATGTTTTTGAAAAGGGGAA
356350 CAAATTTTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.33, C:0.01, G:0.44, T:0.21
Consensus pattern (27 bp):
GGGGAGAGATGTTTTTGAAAAGGGGAA
Found at i:356369 original size:21 final size:21
Alignment explanation
Indices: 356341--356380 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
356331 ATGCTTTTGA
*
356341 AAAGGGGA-ACAAATTTTATT
1 AAAGGGGAGAAAAATTTTATT
356361 AAAGAGGGAGAAAAATTTTA
1 AAAG-GGGAGAAAAATTTTA
356381 AAGGGGAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.50, C:0.03, G:0.23, T:0.25
Consensus pattern (21 bp):
AAAGGGGAGAAAAATTTTATT
Found at i:357109 original size:20 final size:20
Alignment explanation
Indices: 357084--357137 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
357074 CTACCACTAT
* *
357084 TTGTATCGATACATGGTACA
1 TTGTATCGATACATAGTAAA
357104 TTGTATCGATACATAGTAAA
1 TTGTATCGATACATAGTAAA
**
357124 AAGTATCGATACAT
1 TTGTATCGATACAT
357138 TGTGCCTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (20 bp):
TTGTATCGATACATAGTAAA
Found at i:365148 original size:85 final size:85
Alignment explanation
Indices: 364921--365341 Score: 397
Period size: 85 Copynumber: 5.0 Consensus size: 85
364911 ATGAAAGGGG
* * * * * * * *
364921 TTACTCAAGACTAAATTGATAGGTAAACAAGGGATATAAAAGTTGATCAGGATTGAACTGACAAG
1 TTACTCAGGACTAAGTCGATAGGTAAACAAAGGATAAAAAAGTTGACCAGGATTAAACCGACAAG
364986 TCAACAAAGGATAAAAAGAT
66 TCAACAAAGGATAAAAAGAT
* * * * * *
365006 TTAC-CTGGGACTAAGTCAAT-GAGTAGACAAAGGATGAAAGAGTTGA-CTGAGATTAAACCGAC
1 TTACTC-AGGACTAAGTCGATAG-GTAAACAAAGGATAAAAAAGTTGACCAG-GATTAAACCGAC
* * *
365068 AGGTCAACAAAGGAT-GAAGGAT
63 AAGTCAACAAAGGATAAAAAGAT
* * * *
365090 TTACTCAGGACTAAGTCAATAGGTAAACAAAGGAAAAAAAAAGTTGACCTGGATTAAACTGACAA
1 TTACTCAGGACTAAGTCGATAGGTAAACAAAGG-ATAAAAAAGTTGACCAGGATTAAACCGACAA
* * *
365155 GTCAACAAAGGGTAAGAGGAT
65 GTCAACAAAGGATAAAAAGAT
* * * * * *
365176 TTACTC-GATACTAAGTCGATAGGTAAAC-AAGGATAAAAAGGTTGAACAAGATTAAATCGATAA
1 TTACTCAG-GACTAAGTCGATAGGTAAACAAAGGATAAAAAAGTTGACCAGGATTAAACCGACAA
**
365239 GTCAACAAAAAATAAAAAGAT
65 GTCAACAAAGGATAAAAAGAT
* * * *
365260 TTACTCAGGACTAAGTCGATAGGTAAACAAAGAATAAAAAGGTTGACC-GAGATTGAACTGACAA
1 TTACTCAGGACTAAGTCGATAGGTAAACAAAGGATAAAAAAGTTGACCAG-GATTAAACCGACAA
* *
365324 GTAAAAAAAGGATAAAAA
65 GTCAACAAAGGATAAAAA
365342 ACTTAACTGA
Statistics
Matches: 271, Mismatches: 53, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
84 100 0.37
85 139 0.51
86 32 0.12
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (85 bp):
TTACTCAGGACTAAGTCGATAGGTAAACAAAGGATAAAAAAGTTGACCAGGATTAAACCGACAAG
TCAACAAAGGATAAAAAGAT
Found at i:365179 original size:170 final size:169
Alignment explanation
Indices: 364921--365341 Score: 469
Period size: 170 Copynumber: 2.5 Consensus size: 169
364911 ATGAAAGGGG
* * * * * *
364921 TTACTCAAGACTAAATTGATAGGTAAAC-AAGGGATATAAAAGTTGATCAGGATTGAACTGACAA
1 TTACTCAGGACTAAGTCGATAGGTAAACAAAGGAATAAAAAAGTTGA-CCGGATTGAACTGACAA
* * *
364985 GTCAACAAAGGATAAAAAGATTTAC-CTGGGACTAAGTCAAT-GAGTAGACAAAGGAT-GAAAGA
65 GTCAACAAAGGATAAAAAGATTTACTC-GAGACTAAGTCAATAG-GTAAAC-AAGGATAAAAAG-
* * ** * *
365047 GTTG-ACTGAGATTAAACCGACAGGTCAACAAAGGAT-GAAGGAT
126 GTTGAAC-AAGATTAAACCGACAAGTCAACAAAAAATAAAAAGAT
* * *
365090 TTACTCAGGACTAAGTCAATAGGTAAACAAAGGAAAAAAAAAGTTGACCTGGATTAAACTGACAA
1 TTACTCAGGACTAAGTCGATAGGTAAACAAAGGAATAAAAAAGTTGACC-GGATTGAACTGACAA
* * * * *
365155 GTCAACAAAGGGTAAGAGGATTTACTCGATACTAAGTCGATAGGTAAACAAGGATAAAAAGGTTG
65 GTCAACAAAGGATAAAAAGATTTACTCGAGACTAAGTCAATAGGTAAACAAGGATAAAAAGGTTG
* *
365220 AACAAGATTAAATCGATAAGTCAACAAAAAATAAAAAGAT
130 AACAAGATTAAACCGACAAGTCAACAAAAAATAAAAAGAT
*
365260 TTACTCAGGACTAAGTCGATAGGTAAACAAA-GAATAAAAAGGTTGACCGAGATTGAACTGACAA
1 TTACTCAGGACTAAGTCGATAGGTAAACAAAGGAATAAAAAAGTTGACCG-GATTGAACTGACAA
* *
365324 GTAAAAAAAGGATAAAAA
65 GTCAACAAAGGATAAAAA
365342 ACTTAACTGA
Statistics
Matches: 210, Mismatches: 34, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
168 1 0.00
169 99 0.47
170 108 0.51
171 2 0.01
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.20
Consensus pattern (169 bp):
TTACTCAGGACTAAGTCGATAGGTAAACAAAGGAATAAAAAAGTTGACCGGATTGAACTGACAAG
TCAACAAAGGATAAAAAGATTTACTCGAGACTAAGTCAATAGGTAAACAAGGATAAAAAGGTTGA
ACAAGATTAAACCGACAAGTCAACAAAAAATAAAAAGAT
Found at i:365289 original size:43 final size:42
Alignment explanation
Indices: 365185--365305 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 42
365175 TTTACTCGAT
* *
365185 ACTAAGTCGATAGGTAAAC-AAGGATAAAAAGGTTGAACAAG
1 ACTAAGTCGATAGGTAAACAAAGAATAAAAAGATTGAACAAG
* * * * * * * *
365226 ATTAAATCGATAAGTCAACAAAAAATAAAAAGATTTACTCAGG
1 ACTAAGTCGATAGGTAAACAAAGAATAAAAAGATTGA-ACAAG
*
365269 ACTAAGTCGATAGGTAAACAAAGAATAAAAAGGTTGA
1 ACTAAGTCGATAGGTAAACAAAGAATAAAAAGATTGA
365306 CCGAGATTGA
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
41 15 0.25
42 13 0.21
43 33 0.54
ACGTcount: A:0.51, C:0.10, G:0.19, T:0.20
Consensus pattern (42 bp):
ACTAAGTCGATAGGTAAACAAAGAATAAAAAGATTGAACAAG
Found at i:365672 original size:47 final size:47
Alignment explanation
Indices: 365407--365769 Score: 244
Period size: 47 Copynumber: 7.9 Consensus size: 47
365397 TAAGTGAAAA
** * * *
365407 TGAAAAGAGTTTGACC-AGAACTAACGCCAATACAAT--TACAATG-G
1 TGAAAAGAGTTTGACCAAGTCCTAATGCCAATACAGTCAAACAA-GAG
* * * * *
365451 TGAAAGGAGTTTGACCAAG-ACTAATACCAATACAGTCAAACGAGGG
1 TGAAAAGAGTTTGACCAAGTCCTAATGCCAATACAGTCAAACAAGAG
* * * ** ** * *
365497 TGAAAAGGGTTT-ACCTAGGTCCTAAAGAAAATATTGTCAGATAAG-G
1 TGAAAAGAGTTTGACC-AAGTCCTAATGCCAATACAGTCAAACAAGAG
* ** * *
365543 ATTAAAAGAGTTTGACC-AGGACTAATGCCAATATAGTCAAATAATG-G
1 -TGAAAAGAGTTTGACCAAGTCCTAATGCCAATACAGTCAAACAA-GAG
** *
365590 TGAAAAGAGTTTGACC-AGGACTAATGCCAATACAGTCAAAGAAGAG
1 TGAAAAGAGTTTGACCAAGTCCTAATGCCAATACAGTCAAACAAGAG
* * * *
365636 TGAGAAGGGTTTGACCAAGTCCTAATGCCAATACAGTCAAACTAGGG
1 TGAAAAGAGTTTGACCAAGTCCTAATGCCAATACAGTCAAACAAGAG
* * * * * *
365683 AGAGAAGAGTGTGA-CTAGATCCTAACGCCAATACAGTCAAACAACAG
1 TGAAAAGAGTTTGACCAAG-TCCTAATGCCAATACAGTCAAACAAGAG
* * *
365730 TGAAAAGTGTTTGACCAGGTCCTAATGCCAATATAGTCAA
1 TGAAAAGAGTTTGACCAAGTCCTAATGCCAATACAGTCAA
365770 CTGAGGGCAG
Statistics
Matches: 251, Mismatches: 55, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
44 29 0.12
45 7 0.03
46 94 0.37
47 116 0.46
48 5 0.02
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (47 bp):
TGAAAAGAGTTTGACCAAGTCCTAATGCCAATACAGTCAAACAAGAG
Found at i:365691 original size:139 final size:139
Alignment explanation
Indices: 365406--365769 Score: 380
Period size: 139 Copynumber: 2.6 Consensus size: 139
365396 TTAAGTGAAA
* * * * *
365406 ATGAAAAGAGTTTGACCAGAACTAACGCCAATACAAT--TACAATGGTGAAAGGAGTTTGACCAA
1 ATGAAAAGAGTTTGACCAGGACTAACGCCAATACAGTCAAACAATGGTGAAAAGAGTTTGACCAG
* * * **
365469 GACTAATACCAATACAGTCAAACGAGGGTGAAAAGGGTTTACCTAGGTCCTAAAGAAAATATTGT
66 GACTAATGCCAATACAGTCAAACGAGAGTGAAAAGGGTTTACCTAAGTCCTAAAGAAAATACAGT
*
365534 CAGATAAGG
131 CAAATAAGG
* * * *
365543 ATTAAAAGAGTTTGACCAGGACTAATGCCAATATAGTCAAATAATGGTGAAAAGAGTTTGACCAG
1 ATGAAAAGAGTTTGACCAGGACTAACGCCAATACAGTCAAACAATGGTGAAAAGAGTTTGACCAG
* * **
365608 GACTAATGCCAATACAGTCAAA-GAAGAGTGAGAAGGGTTTGACC-AAGTCCTAATGCCAATACA
66 GACTAATGCCAATACAGTCAAACG-AGAGTGAAAAGGGTTT-ACCTAAGTCCTAAAGAAAATACA
*
365671 GTCAAACTAGGG
129 GTCAAA-TAAGG
* * * ** *
365683 A-GAGAAGAGTGTGACTA-GATCCTAACGCCAATACAGTCAAACAACAGTGAAAAGTGTTTGACC
1 ATGAAAAGAGTTTGACCAGGA--CTAACGCCAATACAGTCAAACAATGGTGAAAAGAGTTTGACC
* *
365746 AGGTCCTAATGCCAATATAGTCAA
64 AGG-ACTAATGCCAATACAGTCAA
365770 CTGAGGGCAG
Statistics
Matches: 187, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
137 32 0.17
138 3 0.02
139 87 0.47
140 47 0.25
141 18 0.10
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.21
Consensus pattern (139 bp):
ATGAAAAGAGTTTGACCAGGACTAACGCCAATACAGTCAAACAATGGTGAAAAGAGTTTGACCAG
GACTAATGCCAATACAGTCAAACGAGAGTGAAAAGGGTTTACCTAAGTCCTAAAGAAAATACAGT
CAAATAAGG
Found at i:365742 original size:94 final size:93
Alignment explanation
Indices: 365546--365786 Score: 269
Period size: 94 Copynumber: 2.6 Consensus size: 93
365536 GATAAGGATT
** *
365546 AAAAGAGTTTGACC-AGGACTAATGCCAATATAGTCAAA-TAATGGTGA-AAAGAGTTTGACCAG
1 AAAAGAGTTTGACCAAGTCCTAATGCCAATATAGTCAAACTAA-GG-GAGAAAGAGTGTGACCAG
* * *
365608 GACTAATGCCAATACAGTCAAAGAAGAGTG
64 GACTAACGCCAATACAGTCAAACAACAGTG
* * * *
365638 AGAAGGGTTTGACCAAGTCCTAATGCCAATACAGTCAAACT-AGGGAGAGAAGAGTGTGACTA-G
1 AAAAGAGTTTGACCAAGTCCTAATGCCAATATAGTCAAACTAAGGGAGA-AAGAGTGTGACCAGG
365701 ATCCTAACGCCAATACAGTCAAACAACAGTG
65 A--CTAACGCCAATACAGTCAAACAACAGTG
* * *
365732 AAAAGTGTTTGACCAGGTCCTAATGCCAATATAGTC-AACTGAGGGCAGAAAGAGT
1 AAAAGAGTTTGACCAAGTCCTAATGCCAATATAGTCAAACTAAGGG-AGAAAGAGT
365787 TTAGTGAAGA
Statistics
Matches: 127, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
91 2 0.02
92 17 0.13
93 37 0.29
94 68 0.54
95 3 0.02
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (93 bp):
AAAAGAGTTTGACCAAGTCCTAATGCCAATATAGTCAAACTAAGGGAGAAAGAGTGTGACCAGGA
CTAACGCCAATACAGTCAAACAACAGTG
Found at i:367339 original size:7 final size:7
Alignment explanation
Indices: 367327--367363 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
367317 GAAAAATGGC
367327 CATTTCT
1 CATTTCT
367334 CATTTCT
1 CATTTCT
367341 CATTTCT
1 CATTTCT
*
367348 CATTTCC
1 CATTTCT
367355 CATTTCT
1 CATTTCT
367362 CA
1 CA
367364 CTAAGAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.51
Consensus pattern (7 bp):
CATTTCT
Found at i:369209 original size:13 final size:13
Alignment explanation
Indices: 369191--369216 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
369181 ACCTTTCGAC
369191 TGTATCGATACAT
1 TGTATCGATACAT
369204 TGTATCGATACAT
1 TGTATCGATACAT
369217 GATTAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:369247 original size:20 final size:21
Alignment explanation
Indices: 369202--369258 Score: 89
Period size: 20 Copynumber: 2.8 Consensus size: 21
369192 GTATCGATAC
369202 ATTGTATCGATACATGATTAA
1 ATTGTATCGATACATGATTAA
*
369223 ATTGTATCGATACATGA-TGA
1 ATTGTATCGATACATGATTAA
*
369243 ATTGTATCAATACATG
1 ATTGTATCGATACATG
369259 TGGCCCAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 17 0.50
21 17 0.50
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (21 bp):
ATTGTATCGATACATGATTAA
Found at i:369699 original size:35 final size:32
Alignment explanation
Indices: 369651--369737 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 32
369641 CAAAGTGATT
369651 GAGAGGTTTTATCTTAGCCTT-TGAAAAAGATAAA
1 GAGAGGTTTTATCTTAGCCTTGTG-AAAAGAT--A
*
369685 GAAGAGGTTCTATCTTAG-CTTGTGAAAAGATA
1 G-AGAGGTTTTATCTTAGCCTTGTGAAAAGATA
*
369717 GGGAGGTTTTATCTTAGCCTT
1 GAGAGGTTTTATCTTAGCCTT
369738 CAAAAGATAG
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
31 14 0.30
32 5 0.11
34 11 0.23
35 17 0.36
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.34
Consensus pattern (32 bp):
GAGAGGTTTTATCTTAGCCTTGTGAAAAGATA
Found at i:369730 original size:31 final size:30
Alignment explanation
Indices: 369653--369749 Score: 104
Period size: 31 Copynumber: 3.0 Consensus size: 30
369643 AAGTGATTGA
*
369653 GAGGTTTTATCTTAGCCTTTGAAAAAGATAAAGAA
1 GAGGTTTTATCTTAG-CTTTG-AAAAGAT--AG-G
*
369688 GAGGTTCTATCTTAGCTTGTGAAAAGATAGG
1 GAGGTTTTATCTTAGCTT-TGAAAAGATAGG
* *
369719 GAGGTTTTATCTTAGCCTTCAAAAGATAGG
1 GAGGTTTTATCTTAGCTTTGAAAAGATAGG
369749 G
1 G
369750 TTGTAAGGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
30 12 0.21
31 16 0.29
32 2 0.04
34 10 0.18
35 16 0.29
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.32
Consensus pattern (30 bp):
GAGGTTTTATCTTAGCTTTGAAAAGATAGG
Found at i:372918 original size:23 final size:22
Alignment explanation
Indices: 372886--372953 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 22
372876 TTAACGATAC
372886 ATGAATAGTGATACGTGAACAGTG
1 ATGAATAGTGATA--TGAACAGTG
*
372910 -TGAACAGTGACCTATGAACAGTG
1 ATGAATAGTGA--TATGAACAGTG
372933 ATGAATAGTG--ATGAACAGTG
1 ATGAATAGTGATATGAACAGTG
372953 A
1 A
372954 AAATGTGATT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 11 0.28
23 18 0.46
24 8 0.21
25 2 0.05
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGAATAGTGATATGAACAGTG
Found at i:372942 original size:10 final size:10
Alignment explanation
Indices: 372901--372953 Score: 54
Period size: 10 Copynumber: 5.0 Consensus size: 10
372891 TAGTGATACG
372901 TGAACAGTG-
1 TGAACAGTGA
372910 TGAACAGTGACCTA
1 TGAACAGTG----A
372924 TGAACAGTGA
1 TGAACAGTGA
*
372934 TGAATAGTGA
1 TGAACAGTGA
372944 TGAACAGTGA
1 TGAACAGTGA
372954 AAATGTGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
9 9 0.24
10 19 0.51
14 9 0.24
ACGTcount: A:0.38, C:0.11, G:0.28, T:0.23
Consensus pattern (10 bp):
TGAACAGTGA
Found at i:373042 original size:53 final size:53
Alignment explanation
Indices: 372979--373113 Score: 243
Period size: 53 Copynumber: 2.5 Consensus size: 53
372969 ACTTCCAATA
372979 TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACCTG
1 TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACCTG
* *
373032 TATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCCTG
1 TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACCTG
373085 TATCGATACATATTTGTGTGTATCGATAC
1 TATCGATACATATTT-TGTGTATCGATAC
373114 TATGCAATTT
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 65 0.83
54 13 0.17
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACCTG
Found at i:373146 original size:20 final size:20
Alignment explanation
Indices: 373083--373153 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
373073 GCCAATGTCC
**
373083 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
373103 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
373123 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
373143 TGTATCGATAC
1 TGTATCGATAC
373154 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:376202 original size:13 final size:13
Alignment explanation
Indices: 376184--376209 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
376174 CAAATTGCTA
376184 TGTATCGATACAT
1 TGTATCGATACAT
376197 TGTATCGATACAT
1 TGTATCGATACAT
376210 GATTTAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:376767 original size:31 final size:33
Alignment explanation
Indices: 376691--376785 Score: 126
Period size: 34 Copynumber: 2.9 Consensus size: 33
376681 AAAGTGATTG
*
376691 AGAGGTTTTATCTTAGCTTTGAAAAAGATAGGGA
1 AGAGGTTCTATCTTAGCTTTG-AAAAGATAGGGA
376725 AGAGGTTCTATCTTAGCTTGTGAAAAGATAGGG-
1 AGAGGTTCTATCTTAGCTT-TGAAAAGATAGGGA
376758 A-A-GTTCTATCTTAGCCTTT-AAAAGATAG
1 AGAGGTTCTATCTTAG-CTTTGAAAAGATAG
376786 TGTTGTAAGG
Statistics
Matches: 58, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
30 9 0.16
31 13 0.22
32 4 0.07
33 1 0.02
34 29 0.50
35 2 0.03
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (33 bp):
AGAGGTTCTATCTTAGCTTTGAAAAGATAGGGA
Found at i:379585 original size:5 final size:5
Alignment explanation
Indices: 379570--379647 Score: 67
Period size: 5 Copynumber: 15.8 Consensus size: 5
379560 CTTATATATA
* *
379570 ATAAT AAAAT ATAAT ATAAT AAAAT ATTAATT ATAAT A-AA- AGTAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT A-TAA-T ATAAT ATAAT A-TAAT
379616 AT-AT ATAAT GA-AAT ATAAT ATAAT AT-AT ATAA
1 ATAAT ATAAT -ATAAT ATAAT ATAAT ATAAT ATAA
379648 ACATAAAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
3 1 0.02
4 11 0.18
5 39 0.65
6 7 0.12
7 2 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:379588 original size:15 final size:15
Alignment explanation
Indices: 379570--379640 Score: 88
Period size: 15 Copynumber: 4.4 Consensus size: 15
379560 CTTATATATA
379570 ATAATAAAATATAAT
1 ATAATAAAATATAAT
379585 ATAATAAAATATTAATT
1 ATAATAAAATA-TAA-T
379602 ATAATAAAAGTAATATAT
1 ATAATAAAA-T-ATA-AT
*
379620 ATAATGAAATATAAT
1 ATAATAAAATATAAT
379635 ATAATA
1 ATAATA
379641 TATATAAACA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
15 18 0.37
16 6 0.12
17 11 0.22
18 12 0.24
19 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (15 bp):
ATAATAAAATATAAT
Found at i:379657 original size:22 final size:23
Alignment explanation
Indices: 379604--379657 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
379594 TATTAATTAT
*
379604 AATAAAA-GTAATATATATAATGA
1 AATAAAATATAATATATATAA-GA
*
379627 AATATAATATAATATATATAA-A
1 AATAAAATATAATATATATAAGA
*
379649 CATAAAATA
1 AATAAAATA
379658 GCCGAATTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 8 0.31
23 6 0.23
24 12 0.46
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (23 bp):
AATAAAATATAATATATATAAGA
Found at i:380557 original size:12 final size:12
Alignment explanation
Indices: 380536--380621 Score: 52
Period size: 12 Copynumber: 7.2 Consensus size: 12
380526 AACAACAACG
380536 AACAGCAAGCAA
1 AACAGCAAGCAA
* *
380548 AACAGTAAGCATG
1 AACAGCAAGCA-A
380561 AACAAGCAAG-AA
1 AAC-AGCAAGCAA
* *
380573 AACAACAAGTAA
1 AACAGCAAGCAA
*
380585 AA-AGC-AGCACC
1 AACAGCAAGCA-A
* * *
380596 ACCAACAAGAAA
1 AACAGCAAGCAA
380608 AACAGCAAGCAA
1 AACAGCAAGCAA
380620 AA
1 AA
380622 ATAGCACCAC
Statistics
Matches: 53, Mismatches: 15, Indels: 12
0.66 0.19 0.15
Matches are distributed among these distances:
10 3 0.06
11 8 0.15
12 30 0.57
13 7 0.13
14 5 0.09
ACGTcount: A:0.59, C:0.22, G:0.15, T:0.03
Consensus pattern (12 bp):
AACAGCAAGCAA
Found at i:380700 original size:21 final size:21
Alignment explanation
Indices: 380661--380700 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
380651 CAAAAATAGC
*
380661 ACCACCAGCAACAACAACACA
1 ACCACCAACAACAACAACACA
380682 ACCACCAACAATCAA-AACA
1 ACCACCAACAA-CAACAACA
380701 ATAAACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.55, C:0.40, G:0.03, T:0.03
Consensus pattern (21 bp):
ACCACCAACAACAACAACACA
Found at i:385933 original size:13 final size:13
Alignment explanation
Indices: 385912--385941 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
385902 TTTACACCAA
385912 AAAACAAAAGAAG
1 AAAACAAAAGAAG
*
385925 AAAAGAAAAGAAG
1 AAAACAAAAGAAG
385938 AAAA
1 AAAA
385942 TTTAGATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAACAAAAGAAG
Found at i:387591 original size:87 final size:87
Alignment explanation
Indices: 387441--387638 Score: 195
Period size: 87 Copynumber: 2.3 Consensus size: 87
387431 ATAAAATCAT
* * * * **
387441 TTCATATTCATTTGCCACTTTGTTGATACTTGCATTTGCATCATTTCACATACATGTGTATTTTA
1 TTCATATGCATTTGCCACTTTATTGATACTTGCATTTGCATCATTTCACACACATCTACATTTTA
* *
387506 GATGACATCGATATTTGCAGTA
66 GATAACATCAATATTTGCAGTA
** * ** ** *
387528 TTCATATGCATTTGCCTTTTTATTGATGCTTGCATTTGCATTGTTTCATGCACATCTACATTTTG
1 TTCATATGCATTTGCCACTTTATTGATACTTGCATTTGCATCATTTCACACACATCTACATTTTA
*
387593 GATAACATTAATATTTGCA-TCA
66 GATAACATCAATATTTGCAGT-A
387615 TTTCATATG--TGTTGCCACTTTATT
1 -TTCATATGCAT-TTGCCACTTTATT
387639 AATGCTATTT
Statistics
Matches: 89, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
86 2 0.02
87 79 0.89
88 8 0.09
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (87 bp):
TTCATATGCATTTGCCACTTTATTGATACTTGCATTTGCATCATTTCACACACATCTACATTTTA
GATAACATCAATATTTGCAGTA
Found at i:388293 original size:20 final size:20
Alignment explanation
Indices: 388268--388342 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
388258 TTTTCACAAT
388268 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
388288 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
*
388308 TTGTATCGATTCATT-TTACA
1 TTGTATCGATACATTGTT-CA
*
388328 ATGTATCGATACATT
1 TTGTATCGATACATT
388343 CAAGCATTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
19 1 0.02
20 48 0.98
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:390726 original size:28 final size:28
Alignment explanation
Indices: 390690--390763 Score: 107
Period size: 28 Copynumber: 2.6 Consensus size: 28
390680 AATTTTTATA
*
390690 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
390718 ATCGAGGATACTCCAACCCCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATTTC
390746 -T-GAAGGGATACTCCAACC
1 ATCG-A-GGATACTCCAACC
390764 TCGGCTTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 1 0.02
27 2 0.05
28 40 0.93
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCCCGTTATTTC
Found at i:390830 original size:108 final size:107
Alignment explanation
Indices: 390682--391000 Score: 460
Period size: 108 Copynumber: 3.0 Consensus size: 107
390672 AAAACATCAA
*
390682 TTTTT-ATAATCGGGGATACTCCAACCCCGTTATTTCATCGAGGATACTCCAACCCCGTTATTTC
1 TTTTTCATAATCGGGG-TACTCCAACCCCGTTATGTCATCGAGGATACTCCAACCCCGTTATTTC
* *
390746 TGAAGGGATACTCCAACCTCGGCTTTATATCTAAAATATTGAT
65 TGAGGGGATACTCCAACCTCGGTTTTATATCTAAAATATTGAT
* * * *
390789 TTTTTCATAATCGAGGGTGCTCCAACCCCGTTATGTCATCGAGGACACTTCAACCCTGTTATTTC
1 TTTTTCATAATCG-GGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAACCCCGTTATTTC
* *
390854 TGAGGGGATACTCCAACCCCGGTTTTATATCCAAAATATTGAT
65 TGAGGGGATACTCCAACCTCGGTTTTATATCTAAAATATTGAT
* * * *
390897 TTTTTCCTAATCGGGGGGTACTCCAACCCCGTTATGTCATCGGGGATACTCCAATCCCGCTATTT
1 TTTTTCATAATC--GGGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAACCCCGTTATTT
* *
390962 CTGAGGGGATACTCCAACCTCGATTTTATTTCTAAAATA
64 CTGAGGGGATACTCCAACCTCGGTTTTATATCTAAAATA
391001 CCAATTTTTT
Statistics
Matches: 187, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
107 5 0.03
108 100 0.53
109 81 0.43
110 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (107 bp):
TTTTTCATAATCGGGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAACCCCGTTATTTCT
GAGGGGATACTCCAACCTCGGTTTTATATCTAAAATATTGAT
Found at i:390947 original size:28 final size:28
Alignment explanation
Indices: 390910--390980 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
390900 TTCCTAATCG
* * *
390910 GGGGGTACTCCAACCCCGTTATGTCAT-C
1 GGGGATACTCCAACCCCGCTATGTC-TGA
* *
390938 GGGGATACTCCAATCCCGCTATTTCTGA
1 GGGGATACTCCAACCCCGCTATGTCTGA
390966 GGGGATACTCCAACC
1 GGGGATACTCCAACC
390981 TCGATTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 1 0.03
28 35 0.97
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGCTATGTCTGA
Found at i:390974 original size:109 final size:107
Alignment explanation
Indices: 390644--391000 Score: 457
Period size: 108 Copynumber: 3.3 Consensus size: 107
390634 TTCACAATTA
* * * * * *
390644 GGGATACTCCAACCCCGATTTTATTTTCAAAACA-TCAATTTTT-ATAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATATCCAAAATATTGATTTTTTCATAATCGGGGGTACTCCAAC
* *
390707 CCCGTTATTTCATCGAGGATACTCCAACCCCGTTATTTCTGAA
66 CCCGTTATGTCATCGAGGATACTCCAA-CCCGTTATTTCTGAG
* ** * * *
390750 GGGATACTCCAACCTCGGCTTTATATCTAAAATATTGATTTTTTCATAATCGAGGGTGCTCCAAC
1 GGGATACTCCAACCCCGATTTTATATCCAAAATATTGATTTTTTCATAATCGGGGGTACTCCAAC
* *
390815 CCCGTTATGTCATCGAGGACACTTCAACCCTGTTATTTCTGAG
66 CCCGTTATGTCATCGAGGATACTCCAACCC-GTTATTTCTGAG
* *
390858 GGGATACTCCAACCCCGGTTTTATATCCAAAATATTGATTTTTTCCTAATCGGGGGGTACTCCAA
1 GGGATACTCCAACCCCGATTTTATATCCAAAATATTGATTTTTTCATAATC-GGGGGTACTCCAA
* *
390923 CCCCGTTATGTCATCGGGGATACTCCAATCCCGCTATTTCTGAG
65 CCCCGTTATGTCATCGAGGATACTCCAA-CCCGTTATTTCTGAG
* * *
390967 GGGATACTCCAACCTCGATTTTATTTCTAAAATA
1 GGGATACTCCAACCCCGATTTTATATCCAAAATA
391001 CCAATTTTTT
Statistics
Matches: 216, Mismatches: 30, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
106 27 0.12
107 10 0.05
108 99 0.46
109 77 0.36
110 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.32
Consensus pattern (107 bp):
GGGATACTCCAACCCCGATTTTATATCCAAAATATTGATTTTTTCATAATCGGGGGTACTCCAAC
CCCGTTATGTCATCGAGGATACTCCAACCCGTTATTTCTGAG
Found at i:391079 original size:51 final size:50
Alignment explanation
Indices: 390967--391085 Score: 150
Period size: 51 Copynumber: 2.3 Consensus size: 50
390957 TATTTCTGAG
* **
390967 GGGATACTCCAACCTCGATTTTATTTCTAAAATACCAATTTTTTACAATC
1 GGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTCCACAATC
* * *
391017 GGAGATGCTCCAA-CTCCGATTTTATTTCCAAAATACCGATTTTCCATAATC
1 GG-GATACTCCAACCT-CGATTTTATTTCCAAAATACCAATTTTCCACAATC
391068 TGGGATACTCCAACCTCG
1 -GGGATACTCCAACCTCG
391086 TTATTTCTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
50 4 0.07
51 50 0.86
52 4 0.07
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (50 bp):
GGGATACTCCAACCTCGATTTTATTTCCAAAATACCAATTTTCCACAATC
Found at i:391177 original size:130 final size:130
Alignment explanation
Indices: 390939--391181 Score: 330
Period size: 130 Copynumber: 1.9 Consensus size: 130
390929 TATGTCATCG
*
390939 GGGATACTCCAATCCCGCTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCTAAAATACCA
1 GGGATACTCCAATCCCGCTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCCAAAATACCA
* * * *
391004 ATTTTTTACAATCGGAGATGCTCCAACTCCGATTTTATTTCCAAAATACCGATTTTCCATAATCT
66 ATTTTTCACAATCGGAGATACTCCAACCCCGATTTTATCTCCAAAATACCGATTTTCCATAATCT
* *
391069 GGGATACTCCAA-CCTCGTTATTTCTGAGGGGATACTCCAACC-CTGATTTTATTTCCAAAATAT
1 GGGATACTCCAATCC-CGCTATTTCTGAGGGGATACTCCAACCTC-GATTTTATTTCCAAAATAC
** * * *
391132 TGATTTTTCATAATCGGGGATACTCCAGCCCCG-TTGTTATCTCCAAAATA
64 CAATTTTTCACAATCGGAGATACTCCAACCCCGATT-TTATCTCCAAAATA
391182 TTAAATTTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
129 5 0.05
130 93 0.95
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (130 bp):
GGGATACTCCAATCCCGCTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCCAAAATACCA
ATTTTTCACAATCGGAGATACTCCAACCCCGATTTTATCTCCAAAATACCGATTTTCCATAATCT
Found at i:392473 original size:90 final size:89
Alignment explanation
Indices: 392320--392571 Score: 278
Period size: 90 Copynumber: 2.8 Consensus size: 89
392310 TTCCCTCAAC
* * * * * *
392320 TGGGGCAAGGGTGCAAACCATACATTTCCCAGTCAAATCTTTTTCCCTCAACTGCA-AGATGATA
1 TGGGGCAAAGGTGCAAACCATACATTTTCCAGTCATATCCTTTTCCTTCAAC--CATAAATGATA
*
392384 TTGATGCATCACAGAGCATAATACCT
64 TTGATGCATCACAAAGCATAATACCT
* *
392410 TGGGGCAAAGGTGCAAACCATGCATTTTCCAGTCATATCCTTTTCCTTTAACCATTAAATGATAT
1 TGGGGCAAAGGTGCAAACCATACATTTTCCAGTCATATCCTTTTCCTTCAACCA-TAAATGATAT
* * *
392475 TGATGCATCCCAAAGCTTGATACCT
65 TGATGCATCACAAAGCATAATACCT
* * * *
392500 TGGGGCAAAAGTGC-AGCTCATACA--TTCCTAATCATATCCTTTTCCTTCAACTACTAAATGAT
1 TGGGGCAAAGGTGCAAAC-CATACATTTTCC-AGTCATATCCTTTTCCTTCAACCA-TAAATGAT
392562 ATTGATGCAT
63 ATTGATGCAT
392572 TAGAAGGCCT
Statistics
Matches: 139, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
88 6 0.04
89 41 0.29
90 92 0.66
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (89 bp):
TGGGGCAAAGGTGCAAACCATACATTTTCCAGTCATATCCTTTTCCTTCAACCATAAATGATATT
GATGCATCACAAAGCATAATACCT
Found at i:393490 original size:79 final size:79
Alignment explanation
Indices: 393406--393788 Score: 439
Period size: 79 Copynumber: 4.9 Consensus size: 79
393396 CTTTGTTATT
* * * *
393406 TCGTATGGTTTCATCCCGGTCAATTTTCCTTTGTTGGTTCATATGGTTTCGTCCCGACCAACGCC
1 TCGTATGGTTTCATCCTGGTCAACTTTCCTTTGTTGGTTCGTATGGTTTCGTCCCGACCAATGCC
393471 TTTCCTTTGTTGAC
66 TTTCCTTTGTTGAC
* * ** * *
393485 TCGTATGGTTTCATCCTAGTCAACTTTCCTTTGTTGTTTCGTATGGTTTCGTCTTGGCCAATGGC
1 TCGTATGGTTTCATCCTGGTCAACTTTCCTTTGTTGGTTCGTATGGTTTCGTCCCGACCAATGCC
* *
393550 TTT-TTTTGTTTAC
66 TTTCCTTTGTTGAC
* * * *
393563 TCGTATGGTTTTAT-CTGGTCAACTTTCCTTTGTTAGTTCGCATGGTTTCGTCCCAACCAATGCC
1 TCGTATGGTTTCATCCTGGTCAACTTTCCTTTGTTGGTTCGTATGGTTTCGTCCCGACCAATGCC
* *
393627 TTTCTTTTGTTGCC
66 TTTCCTTTGTTGAC
** * * * * * *
393641 TTATATGGTTTCGTCCTGGTTAACTTTCCTTTATTGGTTCGTATGGTTTCATCCCGGCCAAAGCC
1 TCGTATGGTTTCATCCTGGTCAACTTTCCTTTGTTGGTTCGTATGGTTTCGTCCCGACCAATGCC
393706 TTTCCTTTGTTGAC
66 TTTCCTTTGTTGAC
* * * * * * * *
393720 TCGTATGGCTTCCTTCTAGTCAACTTTCCTTTCTTGGTTCAT-TGGTTTCATCCCGACAAATGCC
1 TCGTATGGTTTCATCCTGGTCAACTTTCCTTTGTTGGTTCGTATGGTTTCGTCCCGACCAATGCC
393784 TTTCC
66 TTTCC
393789 CTACTTAAGT
Statistics
Matches: 252, Mismatches: 50, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
77 44 0.17
78 63 0.25
79 145 0.58
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (79 bp):
TCGTATGGTTTCATCCTGGTCAACTTTCCTTTGTTGGTTCGTATGGTTTCGTCCCGACCAATGCC
TTTCCTTTGTTGAC
Found at i:393492 original size:41 final size:39
Alignment explanation
Indices: 393314--394259 Score: 385
Period size: 38 Copynumber: 23.7 Consensus size: 39
393304 GTCTCGTCAA
** * * * *
393314 CTTTCCTTTGTTGGTTCGTATGATTTCATCCAGGCTAAC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
* * * * * * **
393353 CCTTCTTTTTTTGACTCGTTTGGTTTCATCCTGATCAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
* * * *
393391 CTTTTCTTTGTT-ATTTCGTATGGTTTCATCCCGGTCAA-
1 CTTTCCTTTGTTGA-CTCGTATGGTTTCGTCCCGGCCAAC
* ** * *
393429 TTTTCCTTTGTTGGTTCATATGGTTTCGTCCCGACCAACGC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAA--C
* ** *
393470 CTTTCCTTTGTTGACTCGTATGGTTTCATCCTAGTCAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
** ** *
393508 CTTTCCTTTGTTGTTTCGTATGGTTTCGTCTTGGCCAATGG
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAA--C
* * ** * *
393549 CTTT-TTTTGTTTACTCGTATGGTTTTAT-CTGGTCAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
* * **
393585 CTTTCCTTTGTT-AGTTCGCATGGTTTCGTCCCAACCAATGC
1 CTTTCCTTTGTTGA-CTCGTATGGTTTCGTCCCGGCCAA--C
* * ** * **
393626 CTTTCTTTTGTTGCCTTATATGGTTTCGTCCTGGTTAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
* ** *
393664 CTTTCCTTTATTGGTTCGTATGGTTTCATCCCGGCCAAAGC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCC-AA-C
* * * ** *
393705 CTTTCCTTTGTTGACTCGTATGGCTTCCTTCTAGTCAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
* ** * * * *
393743 CTTTCCTTTCTTGGTTCAT-TGGTTTCATCCCGACAAATGC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAA--C
** * * *
393783 CTTTCCCTACTTAAGTTTCCTTTGTTGGTTTGTATGGTTTTGTCCCAGCCAAC
1 CTTT-CCT--TT--GTTGAC-----T--C--GTATGGTTTCGTCCCGGCCAAC
* * * *
393836 GCTTTTCCCTTATTGACTCGTATGGTTTCATCCCGGTCAA-
1 -C-TTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
** * * *
393876 CTTTCCTTTGTTGGTTCATATGGTTTTGTCTCGGCCAATGC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAA--C
* ** **
393917 CTTTCCTTTGGTGACTCGTACAGTTTCGTCCCGATCAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
* ** * * * *
393955 TTTTCCTTTGTTGGTTTGTATGGTTTTGTCTCAGCCAATGC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAA--C
* * *
393996 CTTTCCTTTGTTGACTCATATGGTTTCGTCTCGGTCAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
** ** *
394034 CTTTCCTTTGTTGGTTTATATGGTTTCGTCCTGGCCAACAC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCC-A-AC
* *
394075 CTTTCCTTTGTTTACTCGTATGGTTTCGTCCCGGTCAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
** * * *
394113 CTTTCCTTTGTTGGTTCATATGGTTTCATCCTGGCCAACAC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCC-A-AC
* * * **
394154 CTTTCCTTTGTTGACTCATATGGTTTCATCCCAGTTAA-
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
* * * *
394192 CTTTCCTTTGTTGGCTCATACGGTTTCATCCCGGCCAAC
1 CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
*
394231 GCATCTCCTTTGTTGACTCGTATGGTTTC
1 -C-TTTCCTTTGTTGACTCGTATGGTTTC
394260 ATTCTAGTCA
Statistics
Matches: 660, Mismatches: 194, Indels: 104
0.69 0.20 0.11
Matches are distributed among these distances:
36 5 0.01
37 28 0.04
38 281 0.43
39 40 0.06
40 29 0.04
41 245 0.37
43 2 0.00
45 3 0.00
50 4 0.01
52 2 0.00
53 1 0.00
54 4 0.01
55 16 0.02
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (39 bp):
CTTTCCTTTGTTGACTCGTATGGTTTCGTCCCGGCCAAC
Found at i:393517 original size:117 final size:115
Alignment explanation
Indices: 393309--393534 Score: 310
Period size: 117 Copynumber: 1.9 Consensus size: 115
393299 ACCTTGTCTC
* * * * * *
393309 GTCAACTTTCCTTTGTTGGTTCGTATGATTTCATCCAGGCTAACCCTTCTTTTTTTGACTCGTTT
1 GTCAACTTTCCTTTGTTGGTTCATATGATTTCATCCAGACCAACCCTTCCTTTGTTGACTCGTAT
*
393374 GGTTTCATCCTGATCAACTTTTCTTTGTTATTTCGTATGGTTTCATCCCG
66 GGTTTCATCCTGATCAACTTTCCTTTGTTATTTCGTATGGTTTCATCCCG
* * * *
393424 GTCAATTTTCCTTTGTTGGTTCATATGGTTTCGTCCCGACCAACGCCTTTCCTTTGTTGACTCGT
1 GTCAACTTTCCTTTGTTGGTTCATATGATTTCATCCAGACCAAC-CC-TTCCTTTGTTGACTCGT
*
393489 ATGGTTTCATCCT-AGTCAACTTTCCTTTGTTGTTTCGTATGGTTTC
64 ATGGTTTCATCCTGA-TCAACTTTCCTTTGTTATTTCGTATGGTTTC
393535 GTCTTGGCCA
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
115 37 0.39
116 3 0.03
117 56 0.58
ACGTcount: A:0.13, C:0.23, G:0.17, T:0.47
Consensus pattern (115 bp):
GTCAACTTTCCTTTGTTGGTTCATATGATTTCATCCAGACCAACCCTTCCTTTGTTGACTCGTAT
GGTTTCATCCTGATCAACTTTCCTTTGTTATTTCGTATGGTTTCATCCCG
Found at i:393608 original size:156 final size:156
Alignment explanation
Indices: 393406--393788 Score: 439
Period size: 156 Copynumber: 2.4 Consensus size: 156
393396 CTTTGTTATT
* * * * *
393406 TCGTATGGTTTCATCCCGGTCAATTTTCCTTTGTTGGTTCATATGGTTTCGTCCCGACCAACGCC
1 TCGTATGGTTTTAT-CTGGTCAACTTTCCTTTGTTGGTTC-CATGGTTTCGTCCCGACCAATGCC
* * * *
393471 TTTCCTTTGTTGACTCGTATGGTTTCATCCTAGTCAACTTTCCTTTGTTGTTTCGTATGGTTTCG
64 TTTCCTTTGTTGACTCATATGGTTTCATCCTAGTCAACTTTCCTTTATTGGTTCGTATGGTTTCA
** * * * *
393536 TCTTGGCCAATGGCTTT-TTTTGTTTAC
129 TCCCGGCCAAAGCCTTTCCTTTGTTGAC
* *
393563 TCGTATGGTTTTATCTGGTCAACTTTCCTTTGTTAGTTCGCATGGTTTCGTCCCAACCAATGCCT
1 TCGTATGGTTTTATCTGGTCAACTTTCCTTTGTTGGTTC-CATGGTTTCGTCCCGACCAATGCCT
* * * * * *
393628 TTCTTTTGTTGCCTTATATGGTTTCGTCCTGGTTAACTTTCCTTTATTGGTTCGTATGGTTTCAT
65 TTCCTTTGTTGACTCATATGGTTTCATCCTAGTCAACTTTCCTTTATTGGTTCGTATGGTTTCAT
393693 CCCGGCCAAAGCCTTTCCTTTGTTGAC
130 CCCGGCCAAAGCCTTTCCTTTGTTGAC
* * * * *
393720 TCGTATGGCTTCCT-TCTAGTCAACTTTCCTTTCTTGGTT-CATTGGTTTCATCCCGACAAATGC
1 TCGTATGG-TT-TTATCTGGTCAACTTTCCTTTGTTGGTTCCA-TGGTTTCGTCCCGACCAATGC
393783 CTTTCC
63 CTTTCC
393789 CTACTTAAGT
Statistics
Matches: 190, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
156 113 0.59
157 52 0.27
158 24 0.13
159 1 0.01
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (156 bp):
TCGTATGGTTTTATCTGGTCAACTTTCCTTTGTTGGTTCCATGGTTTCGTCCCGACCAATGCCTT
TCCTTTGTTGACTCATATGGTTTCATCCTAGTCAACTTTCCTTTATTGGTTCGTATGGTTTCATC
CCGGCCAAAGCCTTTCCTTTGTTGAC
Found at i:393670 original size:194 final size:192
Alignment explanation
Indices: 393309--393694 Score: 420
Period size: 194 Copynumber: 2.0 Consensus size: 192
393299 ACCTTGTCTC
* *
393309 GTCAACTTTCCTTTGTTGGTTCGTATGATTTCATCCAGGCTAACCCTTCTTTTTTTGACTCGTTT
1 GTCAACTTTCCTTTGTTGGTTCGTATGATTTCATCCAGGCCAACCCTTCTTTTTTTGACTCGTAT
* * * ***
393374 GGTTTCATCCTGATCAACTTTTCTTTGTTATTTCGTATGGTTTCATCCCGGTCAATTTTCCTTTG
66 GGTTTCATCCTGATCAACTTTCCTTTGTTAGTTCGCATGGTTTCATCCCAACCAATTTTCCTTTG
* *
393439 TTGGTTCATATGGTTTCGTCCCGACCAACGCCTTTCCTTTGTTGACTCGTATGGTTTCATCCTA
131 TTGCTTCATATGGTTTCGTCCCGACCAA--CCTTTCCTTTATTGACTCGTATGGTTTCATCCTA
* * * ** ** *
393503 GTCAACTTTCCTTTGTTGTTTCGTATGGTTTCGTCTTGGCCAATGGCTT-TTTTTGTTTACTCGT
1 GTCAACTTTCCTTTGTTGGTTCGTATGATTTCATCCAGGCCAA-CCCTTCTTTTT-TTGACTCGT
* * *
393567 ATGGTTTTAT-CTGGTCAACTTTCCTTTGTTAGTTCGCATGGTTTCGTCCCAACCAATGCCTTTC
64 ATGGTTTCATCCTGATCAACTTTCCTTTGTTAGTTCGCATGGTTTCATCCCAACCAAT---TTTC
* * *** **
393631 TTTTGTTGCCTT-ATATGGTTTCGTCCTGGTTAA-CTTTCCTTTATTGGTTCGTATGGTTTCATC
126 CTTTGTTG-CTTCATATGGTTTCGTCCCGACCAACCTTTCCTTTATTGACTCGTATGGTTTCATC
393694 C
190 C
393695 CGGCCAAAGC
Statistics
Matches: 158, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
194 109 0.69
195 19 0.12
197 28 0.18
198 2 0.01
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (192 bp):
GTCAACTTTCCTTTGTTGGTTCGTATGATTTCATCCAGGCCAACCCTTCTTTTTTTGACTCGTAT
GGTTTCATCCTGATCAACTTTCCTTTGTTAGTTCGCATGGTTTCATCCCAACCAATTTTCCTTTG
TTGCTTCATATGGTTTCGTCCCGACCAACCTTTCCTTTATTGACTCGTATGGTTTCATCCTA
Found at i:393932 original size:79 final size:78
Alignment explanation
Indices: 393798--394344 Score: 581
Period size: 79 Copynumber: 6.9 Consensus size: 78
393788 CCTACTTAAG
** * * * * *
393798 TTTCCTTTGTTGGTTTGTATGGTTTTGTCCCAGCCAACGCTTTTCCCTTATTGACTCGTATGGTT
1 TTTCCTTTGTTGGTTCATATGGTTTCGT-CCGGCCAACGCCTTTCCTTTGTTGACTCGTATGGTT
393863 TCATCCCGGTCAAC
65 TCATCCCGGTCAAC
* * * **
393877 TTTCCTTTGTTGGTTCATATGGTTTTGTCTCGGCCAATGCCTTTCCTTTGGTGACTCGTACAGTT
1 TTTCCTTTGTTGGTTCATATGGTTTCGTC-CGGCCAACGCCTTTCCTTTGTTGACTCGTATGGTT
* * *
393942 TCGTCCCGATCAAT
65 TCATCCCGGTCAAC
** * * * *
393956 TTTCCTTTGTTGGTTTGTATGGTTTTGTCTCAGCCAATGCCTTTCCTTTGTTGACTCATATGGTT
1 TTTCCTTTGTTGGTTCATATGGTTTCGTC-CGGCCAACGCCTTTCCTTTGTTGACTCGTATGGTT
* *
394021 TCGTCTCGGTCAAC
65 TCATCCCGGTCAAC
* * *
394035 TTTCCTTTGTTGGTTTATATGGTTTCGTCCTGGCCAACACCTTTCCTTTGTTTACTCGTATGGTT
1 TTTCCTTTGTTGGTTCATATGGTTTCGTCC-GGCCAACGCCTTTCCTTTGTTGACTCGTATGGTT
*
394100 TCGTCCCGGTCAAC
65 TCATCCCGGTCAAC
* * *
394114 TTTCCTTTGTTGGTTCATATGGTTTCATCCTGGCCAACACCTTTCCTTTGTTGACTCATATGGTT
1 TTTCCTTTGTTGGTTCATATGGTTTCGTCC-GGCCAACGCCTTTCCTTTGTTGACTCGTATGGTT
* *
394179 TCATCCCAGTTAAC
65 TCATCCCGGTCAAC
* * * * *
394193 TTTCCTTTGTTGGCTCATACGGTTTCATCCCGGCCAACGCATCTCCTTTGTTGACTCGTATGGTT
1 TTTCCTTTGTTGGTTCATATGGTTTCGT-CCGGCCAACGCCTTTCCTTTGTTGACTCGTATGGTT
* **
394258 TCATTCTAGTCAAC
65 TCATCCCGGTCAAC
** * * * * * ** *
394272 TTTCCTTTGTTGGTTGGTATGGTTTCATCACAGCCAACACCTTCCCTTTATTGGTTTGTATGGTT
1 TTTCCTTTGTTGGTTCATATGGTTTCGTC-CGGCCAACGCCTTTCCTTTGTTGACTCGTATGGTT
394337 TCATCCCG
65 TCATCCCG
394345 ACCAACAACT
Statistics
Matches: 401, Mismatches: 63, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
78 3 0.01
79 396 0.99
80 2 0.00
ACGTcount: A:0.13, C:0.25, G:0.19, T:0.43
Consensus pattern (78 bp):
TTTCCTTTGTTGGTTCATATGGTTTCGTCCGGCCAACGCCTTTCCTTTGTTGACTCGTATGGTTT
CATCCCGGTCAAC
Found at i:394242 original size:237 final size:236
Alignment explanation
Indices: 393798--394344 Score: 659
Period size: 237 Copynumber: 2.3 Consensus size: 236
393788 CCTACTTAAG
* * * *
393798 TTTCCTTTGTTGGTTTGTATGGTTTTGTCCCAGCCAACGCTTTTCCCTTATTGACTCGTATGGTT
1 TTTCCTTTGTTGGTTTGTATGGTTTCGT-CCAGCCAACACCTTTCCTTTATTGACTCGTATGGTT
** **
393863 TCATCCCGGTCAACTTTCCTTTGTTGGTTCATATGGTTTTGTCTCGGCCAATGCCTTTCCTTTGG
65 TCATCCCGGTCAACTTTCCTTTGTTGGTTCATATGGTTTCATCTCGGCCAACACCTTTCCTTTGG
* * * * ** * ** *
393928 TGACTCGTACAGTTTCGTCCCGATCAATTTTCCTTTGTTGGTTTGTATGGTTTTGTCTCAGCCAA
130 TGACTCATACAGTTTCATCCCGATCAACTTTCCTTTGTTGGCTCATACGGTTTCATCCCAGCCAA
* * * * *
393993 TGCCTTTCCTTTGTTGACTCATATGGTTTC-GTCTCGGTCAAC
195 CGCATCTCCTTTGTTGACTCATATGGTTTCATTCT-AGTCAAC
* * * *
394035 TTTCCTTTGTTGGTTTATATGGTTTCGTCCTGGCCAACACCTTTCCTTTGTTTACTCGTATGGTT
1 TTTCCTTTGTTGGTTTGTATGGTTTCGTCC-AGCCAACACCTTTCCTTTATTGACTCGTATGGTT
*
394100 TCGTCCCGGTCAACTTTCCTTTGTTGGTTCATATGGTTTCATC-CTGGCCAACACCTTTCCTTTG
65 TCATCCCGGTCAACTTTCCTTTGTTGGTTCATATGGTTTCATCTC-GGCCAACACCTTTCCTTTG
* ** * *
394164 TTGACTCATATGGTTTCATCCC-AGTTAACTTTCCTTTGTTGGCTCATACGGTTTCATCCCGGCC
129 GTGACTCATACAGTTTCATCCCGA-TCAACTTTCCTTTGTTGGCTCATACGGTTTCATCCCAGCC
*
394228 AACGCATCTCCTTTGTTGACTCGTATGGTTTCATTCTAGTCAAC
193 AACGCATCTCCTTTGTTGACTCATATGGTTTCATTCTAGTCAAC
* * * ** *
394272 TTTCCTTTGTTGGTTGGTATGGTTTCATCACAGCCAACACCTTCCCTTTATTGGTTTGTATGGTT
1 TTTCCTTTGTTGGTTTGTATGGTTTCGTC-CAGCCAACACCTTTCCTTTATTGACTCGTATGGTT
394337 TCATCCCG
65 TCATCCCG
394345 ACCAACAACT
Statistics
Matches: 260, Mismatches: 45, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
236 4 0.02
237 252 0.97
238 4 0.02
ACGTcount: A:0.13, C:0.25, G:0.19, T:0.43
Consensus pattern (236 bp):
TTTCCTTTGTTGGTTTGTATGGTTTCGTCCAGCCAACACCTTTCCTTTATTGACTCGTATGGTTT
CATCCCGGTCAACTTTCCTTTGTTGGTTCATATGGTTTCATCTCGGCCAACACCTTTCCTTTGGT
GACTCATACAGTTTCATCCCGATCAACTTTCCTTTGTTGGCTCATACGGTTTCATCCCAGCCAAC
GCATCTCCTTTGTTGACTCATATGGTTTCATTCTAGTCAAC
Found at i:394804 original size:17 final size:16
Alignment explanation
Indices: 394769--394846 Score: 88
Period size: 17 Copynumber: 4.9 Consensus size: 16
394759 CCTAATATAT
394769 TATAATAAAATAT-AA
1 TATAATAAAATATAAA
*
394784 TATAACAAAATATTAAA
1 TATAATAAAATA-TAAA
*
394801 TATAATAAAATAATATA
1 TATAATAAAAT-ATAAA
*
394818 TATAATGAAATAT-AA
1 TATAATAAAATATAAA
*
394833 TATAATAATATATA
1 TATAATAAAATATA
394847 TATAAAAACA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
15 23 0.44
16 3 0.06
17 25 0.48
18 1 0.02
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (16 bp):
TATAATAAAATATAAA
Found at i:394805 original size:32 final size:30
Alignment explanation
Indices: 394762--394851 Score: 101
Period size: 32 Copynumber: 2.9 Consensus size: 30
394752 TGGTTTGCCT
*
394762 AATATATTATAATAAAATATAATATAACAA
1 AATATAATATAATAAAATATAATATAACAA
**
394792 AATATTAAATATAATAAAATAATATATATAATGA
1 AATA-T-AATATAATAAAAT-ATA-ATATAACAA
*
394826 AATATAATATAATAATATAT-ATATAA
1 AATATAATATAATAAAATATAATATAA
394852 AAACATAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
29 6 0.12
30 4 0.08
31 3 0.06
32 24 0.46
33 4 0.08
34 11 0.21
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (30 bp):
AATATAATATAATAAAATATAATATAACAA
Found at i:394836 original size:5 final size:5
Alignment explanation
Indices: 394761--394851 Score: 68
Period size: 5 Copynumber: 18.6 Consensus size: 5
394751 TTGGTTTGCC
* * * *
394761 TAATA TATTA TAATA AAATA TAATA TAACA AAATA TTAAATA TAATA -AA-A
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA -T-AATA TAATA TAATA
394811 TAATA T-ATA TAATGA -AATA TAATA T-A-A TAATA TATATA TAA
1 TAATA TAATA TAAT-A TAATA TAATA TAATA TAATA TA-ATA TAA
394852 AAACATAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
3 3 0.04
4 11 0.16
5 43 0.63
6 7 0.10
7 4 0.06
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (5 bp):
TAATA
Found at i:394840 original size:27 final size:26
Alignment explanation
Indices: 394761--394852 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 26
394751 TTGGTTTGCC
394761 TAATATATTATAATAAAATATAATATAA
1 TAATATA-TATAAT-AAATATAATATAA
* *
394789 CAA-A-ATAT--TAAATATAATAAAA
1 TAATATATATAATAAATATAATATAA
394811 TAATATATATAATGAAATATAATATAA
1 TAATATATATAAT-AAATATAATATAA
394838 TAATATATAT-ATAAA
1 TAATATATATAATAAA
394853 AACATAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
22 14 0.25
23 2 0.04
24 4 0.07
25 6 0.11
26 4 0.07
27 23 0.42
28 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (26 bp):
TAATATATATAATAAATATAATATAA
Found at i:394847 original size:17 final size:16
Alignment explanation
Indices: 394761--394851 Score: 77
Period size: 15 Copynumber: 5.8 Consensus size: 16
394751 TTGGTTTGCC
*
394761 TAATATATTATAATAA
1 TAATATAATATAATAA
*
394777 -AATATAATATAACAA
1 TAATATAATATAATAA
394792 -AATATTAA-AT-ATAA
1 TAATA-TAATATAATAA
*
394806 TAAAATAATATATATAA
1 TAATATAATATA-ATAA
394823 TGAAATATAATATAATAA
1 T--AATATAATATAATAA
394841 T-ATAT-ATATAA
1 TAATATAATATAA
394852 AAACATAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
14 12 0.19
15 28 0.44
16 3 0.05
17 5 0.08
18 5 0.08
19 10 0.16
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (16 bp):
TAATATAATATAATAA
Found at i:394859 original size:27 final size:27
Alignment explanation
Indices: 394802--394859 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
394792 AATATTAAAT
* *
394802 ATAATAAAATAATATATATAATGAAAT
1 ATAATAAAATAATATATATAATAAAAC
*
394829 ATAATATAATAATATATAT-ATAAAAAC
1 ATAATAAAATAATATATATAAT-AAAAC
394856 ATAA
1 ATAA
394860 AATAGCCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (27 bp):
ATAATAAAATAATATATATAATAAAAC
Found at i:395795 original size:13 final size:12
Alignment explanation
Indices: 395772--395826 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
395762 ACACCACCAA
395772 CAAGCAAAATAG
1 CAAGCAAAATAG
395784 CAAGCAAAAATAG
1 CAAGC-AAAATAG
* *
395797 C-A-C-CACTAG
1 CAAGCAAAATAG
*
395806 TAAGCAAAATAG
1 CAAGCAAAATAG
395818 CAAGCAAAA
1 CAAGCAAAA
395827 ACAACACCAC
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 4 0.12
10 1 0.03
11 2 0.06
12 18 0.55
13 8 0.24
ACGTcount: A:0.56, C:0.20, G:0.15, T:0.09
Consensus pattern (12 bp):
CAAGCAAAATAG
Found at i:395801 original size:34 final size:34
Alignment explanation
Indices: 395736--395839 Score: 129
Period size: 34 Copynumber: 3.1 Consensus size: 34
395726 AGCATGAACA
* *
395736 AACAAG-AAAATATCAAGTAAAAAGTAACACCACC
1 AACAAGCAAAATAGCAAGCAAAAA-TAACACCACC
* *
395770 AACAAGCAAAATAGCAAGCAAAAATAGCACCACT
1 AACAAGCAAAATAGCAAGCAAAAATAACACCACC
** *
395804 AGTAAGCAAAATAGCAAGCAAAAACAACACCACC
1 AACAAGCAAAATAGCAAGCAAAAATAACACCACC
395838 AA
1 AA
395840 TAACAGCAGC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 44 0.75
35 15 0.25
ACGTcount: A:0.58, C:0.23, G:0.11, T:0.09
Consensus pattern (34 bp):
AACAAGCAAAATAGCAAGCAAAAATAACACCACC
Found at i:395914 original size:13 final size:13
Alignment explanation
Indices: 395859--395920 Score: 56
Period size: 13 Copynumber: 4.7 Consensus size: 13
395849 CAACACCACC
395859 AGCAAGC-AAAAT
1 AGCAAGCAAAAAT
*
395871 AGTAAGCAAAAAT
1 AGCAAGCAAAAAT
**
395884 AGCACCA-CTAGCAAT
1 AGCA--AGC-AAAAAT
395899 AGCAAGCAAAAAT
1 AGCAAGCAAAAAT
395912 AGCAAGCAA
1 AGCAAGCAA
395921 GAGCAATGAC
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
12 6 0.15
13 22 0.56
14 2 0.05
15 9 0.23
ACGTcount: A:0.55, C:0.19, G:0.16, T:0.10
Consensus pattern (13 bp):
AGCAAGCAAAAAT
Found at i:396143 original size:19 final size:20
Alignment explanation
Indices: 396116--396153 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
396106 TTTCTTTTAA
396116 ACTTCATTTTGC-TTGATTC
1 ACTTCATTTTGCTTTGATTC
*
396135 ACTTGATTTTGCTTTGATT
1 ACTTCATTTTGCTTTGATT
396154 TCTTTCTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.16, C:0.16, G:0.13, T:0.55
Consensus pattern (20 bp):
ACTTCATTTTGCTTTGATTC
Found at i:396961 original size:13 final size:13
Alignment explanation
Indices: 396943--396968 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
396933 CAATTTTTTG
396943 TGTATCGATACAT
1 TGTATCGATACAT
396956 TGTATCGATACAT
1 TGTATCGATACAT
396969 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:397054 original size:20 final size:20
Alignment explanation
Indices: 397029--397101 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
397019 ATCTTTTTTT
397029 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
397049 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
397070 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
397090 ATGTATCGATAC
1 ATGTATCGATAC
397102 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:397080 original size:41 final size:42
Alignment explanation
Indices: 397007--397101 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
396997 CTGCCAAGAA
*
397007 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
397049 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
397090 ATGTATCGATAC
1 ATGTATCGATAC
397102 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:399573 original size:13 final size:13
Alignment explanation
Indices: 399555--399593 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
399545 ATAATCACCC
*
399555 TGTATCGATACAG
1 TGTATCGATACAA
399568 TGTATCGATACAA
1 TGTATCGATACAA
399581 TGTATCGATACAA
1 TGTATCGATACAA
399594 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:399604 original size:20 final size:20
Alignment explanation
Indices: 399579--399617 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
399569 GTATCGATAC
399579 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
399599 AATGTATCGATACATAGAA
1 AATGTATCGATACAAAGAA
399618 TTTCCAGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:401690 original size:15 final size:15
Alignment explanation
Indices: 401670--401700 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
401660 ATTTCGTTTG
*
401670 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
401685 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
401700 G
1 G
401701 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:405779 original size:13 final size:13
Alignment explanation
Indices: 405761--405786 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
405751 CAATTTTTTG
405761 TGTATCGATACAT
1 TGTATCGATACAT
405774 TGTATCGATACAT
1 TGTATCGATACAT
405787 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:405872 original size:20 final size:20
Alignment explanation
Indices: 405847--405919 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
405837 ATCTTTTTTT
405847 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
405867 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
405888 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
405908 ATGTATCGATAC
1 ATGTATCGATAC
405920 TTTGAATTGC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:405898 original size:41 final size:42
Alignment explanation
Indices: 405825--405919 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
405815 CTGCCAAGAA
*
405825 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
405867 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
405908 ATGTATCGATAC
1 ATGTATCGATAC
405920 TTTGAATTGC
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:407333 original size:79 final size:79
Alignment explanation
Indices: 407250--407418 Score: 266
Period size: 79 Copynumber: 2.1 Consensus size: 79
407240 AAATGGGGTC
*
407250 GGAGTATCCCCTCAGAAATAACAGGGTTAGAATATCCCCGATGGTGGAAAATTGGTGTTTTAGAA
1 GGAGTATCCCCTCAGAAATAACAAGGTTAGAATATCCCCGATGGTGGAAAATTGGTGTTTTAGAA
*
407315 ATAAAATCGGAGTT
66 ATAAAACCGGAGTT
* * * *
407329 GGAGTATCCCCTCAGAAATAATAAGGTTGGAGTATCCCTGATGGTGGAAAATTGGTGTTTTAGAA
1 GGAGTATCCCCTCAGAAATAACAAGGTTAGAATATCCCCGATGGTGGAAAATTGGTGTTTTAGAA
*
407394 ATAAAACCGGGGTT
66 ATAAAACCGGAGTT
*
407408 GAAGTATCCCC
1 GGAGTATCCCC
407419 AATTGTGGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.27
Consensus pattern (79 bp):
GGAGTATCCCCTCAGAAATAACAAGGTTAGAATATCCCCGATGGTGGAAAATTGGTGTTTTAGAA
ATAAAACCGGAGTT
Found at i:407415 original size:51 final size:51
Alignment explanation
Indices: 407353--407469 Score: 130
Period size: 51 Copynumber: 2.3 Consensus size: 51
407343 GAAATAATAA
* ** ***
407353 GGTTGGAGTATCCCTGATGGTGGAAAATTGGTGTTTT-AGAAATAAAACCGG
1 GGTTGAAGTATCCCCAATGGTGGAAAATCAATGTTTTGA-AAATAAAACCGG
* *
407404 GGTTGAAGTATCCCCAATTGTGGAAAATCAATGTTTTGAAAATAAAATCGG
1 GGTTGAAGTATCCCCAATGGTGGAAAATCAATGTTTTGAAAATAAAACCGG
407455 GGTT-AGAGTATCCCC
1 GGTTGA-AGTATCCCC
407470 TCGAAAATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
50 1 0.02
51 54 0.96
52 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGAAGTATCCCCAATGGTGGAAAATCAATGTTTTGAAAATAAAACCGG
Found at i:407495 original size:28 final size:28
Alignment explanation
Indices: 407452--407525 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
407442 AAAATAAAAT
* *
407452 CGGGGTTAGAGTATCCCCTCGAAAATAA
1 CGGGGTTGGAGTATCCCCTCAAAAATAA
* *
407480 TGGGGTTGGAGCATCCCCTCAAAAATAA
1 CGGGGTTGGAGTATCCCCTCAAAAATAA
407508 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
407526 AATTATGGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCAAAAATAA
Found at i:407565 original size:79 final size:79
Alignment explanation
Indices: 407482--407637 Score: 188
Period size: 79 Copynumber: 2.0 Consensus size: 79
407472 GAAAATAATG
* * * * *
407482 GGGTTGGAGCATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCAAT-TATGGAAAATCGATGTT
1 GGGTTAGAGCATCCCCTCAAAAATAACAGGGTTAGAATATCCCCAATGT-TGGAAAATCGATATT
*
407546 TTGGAAATAAAACTA
65 TTAGAAATAAAACTA
* ** * *
407561 GGGTTAGAGTATCCCCTTGAAAATAACAGGGTTAGAATATCCCCGATGGTTGGAAAATCGGTATT
1 GGGTTAGAGCATCCCCTCAAAAATAACAGGGTTAGAATATCCCCAAT-GTTGGAAAATCGATATT
407626 TTAGAAATAAAA
65 TTAGAAATAAAA
407638 ACATCAATGA
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 39 0.61
80 24 0.38
81 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (79 bp):
GGGTTAGAGCATCCCCTCAAAAATAACAGGGTTAGAATATCCCCAATGTTGGAAAATCGATATTT
TAGAAATAAAACTA
Found at i:407593 original size:107 final size:107
Alignment explanation
Indices: 407401--407593 Score: 298
Period size: 107 Copynumber: 1.8 Consensus size: 107
407391 GAAATAAAAC
* *
407401 CGGGGTTGAAGTATCCCCAATTGTGGAAAATCAATGTTTTGAAAATAAAATCGGGGTTAGAGTAT
1 CGGGGTTGAAGTATCCCCAATTATGGAAAATCAATGTTTTGAAAATAAAATCAGGGTTAGAGTAT
**
407466 CCCCTCGAAAATAATGGGGTTGGAGCATCCCCTCAAAAATAA
66 CCCCTCGAAAATAACAGGGTTGGAGCATCCCCTCAAAAATAA
* * *
407508 CGGGGTTGGAGTATCCCCAATTATGGAAAATCGATGTTTTGGAAATAAAA-CTAGGGTTAGAGTA
1 CGGGGTTGAAGTATCCCCAATTATGGAAAATCAATGTTTTGAAAATAAAATC-AGGGTTAGAGTA
*
407572 TCCCCTTGAAAATAACAGGGTT
65 TCCCCTCGAAAATAACAGGGTT
407594 AGAATATCCC
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 1 0.01
107 76 0.99
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (107 bp):
CGGGGTTGAAGTATCCCCAATTATGGAAAATCAATGTTTTGAAAATAAAATCAGGGTTAGAGTAT
CCCCTCGAAAATAACAGGGTTGGAGCATCCCCTCAAAAATAA
Found at i:415150 original size:486 final size:486
Alignment explanation
Indices: 412668--420608 Score: 10619
Period size: 486 Copynumber: 16.4 Consensus size: 486
412658 ATTTTGATTG
* *
412668 AAATTCTTGTAAAAGTAGGTGAAATTTCAATGCATGCATTTGTATCATGATGCTGAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
** *
412733 TTGCAAATCATTTAGATAGCTTACTCGAATCTGTTTGAAATTAATAATA-ATGATATTGTGCTTA
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAA-AGATGATATTGTGCTTA
* * * *
412797 TTTTTGCCTTCATTTCTTGATTTATAAGTTATTTAATGAGATTTAAAATTATAGGGATCAAATTG
130 TTTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTG
* * *
412862 CAAAAA--AAAAGTCATGCTTTATGGCCACAAGTATTTGACCGAGCTTTGTAAAGGA-TTTTTTC
195 CAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTC
412924 CATGATTTGTGGATGGTTCC-AGCCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
260 CATGATTTGTGGATGGTTCCAAG-CTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
* * * * *
412988 TTGATTAAGGATCAAAATGCAAATATGCAAAAATTAAAGAACTTGGTTGCATAGTTTGTTCCATG
324 TTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATG
* * * *
413053 AAATTTTTTATTCAGCCAAAACATGATCAACCATTTTGGCATGTTTTACTTGCTGATTTGAAATT
389 AAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATT
* * * *
413118 AATTTAGATGTGTGATAAGGTGTTTACTTGAGA
454 AATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * *
413151 AAATTCTTGTAAAAGTAGGTGAAATTTGAGTGCATCTATTTGTATCATGATGCTGAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * * **
413216 CTGCAAATCATTTAGTTAGCTTGGTTGAATCTGTTTGAAATTGATAATTATGATATTGTGCTTAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* * *
413281 TTTTGCCTTCATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTAC
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
* * * *
413346 AAAAATGAAAAGTCATGCTTTATGGGCAAAAGTATTTGACCAAGCCTTGTAAAGGATTTCTTTCC
196 AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCC
* * * *
413411 AGGATTTGTGGATGGTTCCAAGCTAATTTGGTGATTTGGTTATGTGCTTTTATGATGTTGTGATT
261 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * * *
413476 AACTA-GGGTCAAAATGTAAATATGCAAAAATTTAATGACTTGGTTGCAAAGTTTGTTCCATGAA
326 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAA
*
413540 ATTTTTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
391 ATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
* *
413605 TTTAGATGTGTGATGAGGTGTTTACAAT-AGA
456 TTTAGATGCGTGATGAGGTGTTTGC-ATGAGA
* * * * * * *
413636 AAATTTTTGTTAAATTAGGTGAAATTTCTTTCCACGTATTTGTATCATGATGTTGAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * *
413701 TTGCAAATCATTTAGATAGCTTGGTCAAATCTGTTTGAATTTGATAAAGATGATATTATGCTTAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
*
413766 TTTTACCTTGATTTCTTTATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
* * *
413831 AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTACTTGATCAAGCCTTGTAAATGATTTTTTTCC
196 AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCC
* * * * * * ** *
413896 AAGATGTGTGGATGGTTCCAAGCTGATTTAGTGATTAGATTTTGTGCTTTTACAATGTTATGATT
261 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * *
413961 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACATGGTTGCAAAGCTTGGTTCTATGA
326 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAG-TTTGTTCCATGA
* * * ** *
414026 AATTCCTTATTCAGCAGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCCAATTTAAAATTA
390 AATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTA
* * * * *
414091 CTTCAGAAGCGTGATAAGGTGTTTACATGAGA
455 ATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * *
414123 AAATTCTTGCAAAAGTAGGTGAAATTTCATTACATGTATTCGTATCATGATGCTAAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * * *
414188 TTGCAAATCATTTAGATAGCTTGGTCTAATCTATGTGAAATTGATAAAGATGATATTATGCTTAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* ** * * *
414253 TTTTCCCTTGATTTCCCGATTTACAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTGC
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
* * * * *
414318 AAAAATGAAAAGTCATGCTCTATGCCCAAAAGTATTTGATCCACCCTCGTAAAGGATTTTTTTCC
196 AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCC
* * *
414383 ATGATTTATGGATGGTTCCAAGCTGA-TTGGT-ATTAGATTATGTGTTTTTATGATGTTGTAATT
261 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * **
414446 GATTAAGGGTCAAAATACAAATATGCAAAAATTTAAACACTTGGTTGCAAAGTTTGTTCCATGAA
326 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAA
* * * * ** *
414511 ATTTCTTATTTAGCGGAAACATGATCAACCACTCTGACACATTTTTCTTACTGATTTGAAATTAA
391 ATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
414576 TTTAGATGCGTGATGAGGTGTTTGCATGAGA
456 TTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * *
414607 AAATTCTTGTAAATGTAGGTGAAATTTCTTTGCATGTATTTGTATAATGATGCTGAATTGTT-AG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * **
414671 ATTGCAAATCATTTAAATAGCTTGGTCGAATCTGTTTGATATTGATAAAGATGACGTTGTGCTTA
66 -TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTA
* * ** * *
414736 TTTTTACCTTCATTTCTTGATTTATAAGTTATTTAAGGAGAACTGAAATTATAAGGATTAAATTA
130 TTTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTG
* *
414801 CAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAACCTTGTAAAGGATTTTTTTC
195 CAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTT-
*
414866 CCATGATTTGTGGATGGTTCCAAGCTGATTTGTTGATTTGATTATGTGTTTTTATGATGTTGTGA
259 CCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
*
414931 TTGATTAGGGGTCAAAATGCAAATATGCAAAAA-TGAAGGACTTGGTTGCAAAGTTTGTTCCATG
324 TTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATG
*
414995 AAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGTTGATTTGAAATT
389 AAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATT
* * *
415060 AATTTATATGCGCGATGAGGTGTTTGCCTGA-A
454 AATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * * * *
415092 AAATTTTTGGCAAAAGTAGGTGAAATTTCTTTGCATATATTAGCATCATGATGCTGAATTGTTGA
1 AAATTCTT-GTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGA
* * * * *
415157 ATTCCAAATCATTTAGATAGCTTGGTCGAATCTATTTAAAATTGATAAGGATGATATTGTGCTTA
65 GTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTA
* *
415222 TTTTTACCTTGATTTCTTGATTTATAAGTTGTTTAATGAGATTTGAAATTATAAGGATTAAATTG
130 TTTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTG
* *
415287 CAAGAAA-G-AAAGTCATGCTTTAT-GCCTAAAACTTTTTGATCGAGCCTTGTAAAGGATTTTTT
195 CAA-AAATGAAAAGTCATGCTTTATGGCC-AAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTT
* * * *
415349 TCCATGATTTGTGGATGGTTCCAAGATGATTTGGTGATTTGATCATGTCTTTTTATTATGTTGTG
258 TCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTG
* * * * * * *
415414 ATGGATTAGGGGTTC-AAATGTACATATGCAAAAATTAAAAGACTTGGTTTCAAAGTCTGTTCCA
323 ATTGATTAGGGG-TCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCA
* * ** *
415478 TGAAATTTTTTATTTAGCCGAAAAATGATCAACCATTTTGGCATGTTTTTCTTATTGATTTAAAA
387 TGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAA
415543 TTAATTTAGATGCGTGATGAGGTGTTTGCATGA-A
452 TTAATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* *
415577 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATATATTTGTATCTTGATGCTGAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * * * * *
415642 TTGCAAATCCTTTAGATAGCTTTGTCGAATATATTTGAAAATGATAAAGATGATATTGTGCTTTT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGC-TTA
* * * * *
415707 TTTTTGCCTTGATTTCTTGATTTATAAGTTTTTTAATGAGATTTAAAATTATAGGGTTTAAAATG
130 TTTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTG
* *
415772 CAAAAATGAAAAGTCATGCTTTATGGCTAAAAGTATTTGATCGAGTCTTGTAAAGGATTTTTTTG
195 CAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTT-
* * * * * *
415837 CCATGATTTGTGGTTGGTTCCAAACTAATTTAGTGATTTGATTTTGTGTTTTTATGATGTTGCGA
259 CCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
* *
415902 TTTG-TTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCAA
324 -TTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCAT
* * * *
415966 GAAATTTTTTATTTAGCTGAAACATGATCAACCAATTTGGCATGTTTTTCTTGCTGAATTGAAAT
388 GAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAAT
* *
416031 TAATTTAGATGCATGATGAGGTGTTTGCATGGGA
453 TAATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* ** * * * * * * *
416065 ACATTCTTACAAAATTCGGTAAAATTTCATTGCATGTATTCGTATCATGGTACTAAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* *
416130 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTCAAATTGATAAAGATGATATTGTTCTTAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* * *
416195 TTTTGCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGAATTAATTTG
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGG-ATTAAATTG
** *
416260 CAAAAATGAAAAGTCATGCTTTATGTTCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTATTT
195 CAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTT-TTT
* ** * * *
416325 TCGCGATTTGTGGATGGTTCCAAGCTGACTTGGCGATTTTATTATGTGTTTTTATGATGTTGTGA
259 CCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
* * *
416390 TTGATTAGGGGTCAAAATGAAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTTCATG
324 TTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATG
* * *
416455 AAATTTCTTATTTACCCGAAGCATGATTAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATT
389 AAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATT
416520 AATTTAGATGCGTGATGAGGTGTTTGCATGAGA
454 AATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* ** *
416553 AAATTCTTGTAAAAGTAGGTGAAAATTT-ATTGCATGTATTTGTACCAAAATGCTAAATTGTTGA
1 AAATTCTTGTAAAAGTAGGTG-AAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGA
* * * * * *
416617 ATTG-AGCATTATTTAGATAGCTTCGTCGAATCTATTTGAATTTGATAAAGATGATATTGTGC-T
65 GTTGCA-AATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTT
* ** * * * *
416680 ATTTTTGCCCCGATTTCTTGATTTTTGACTTATTTAATGAGATTTGAAACTATAGGGATTAAATT
129 ATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATT
* *
416745 GTAAAAATGAGAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTT
194 GCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTT
* * * *
416810 CCACGATTTGTGGATGGTTCCAAGCTGATTTCGTGACTTGATTATTTGTTTTTATGATGTTGTGA
259 CCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
* * *
416875 TTGATTAGGGATCAAAATGCAAATATACAAACATTTAAGGACTTGGTTGCAAAGTTTGTTCCATG
324 TTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATG
* * *
416940 AAATTTCTT-TTCTAGCCGAAACATGATCAACCATTTTGACATTTTTTTCTTGCTGAATTGAAAT
389 AAATTTCTTATT-TAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAAT
*
417004 TAATTTAGATGCGTGATGAAGTGTTTGCATGAGA
453 TAATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * * * *
417038 AAATTCTTGTAAACGTTGGTGAAATTTCTTTGCATGTATTTCTATAATGATGCTGAATCGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * *
417103 TTACAAATCATTTAGATAGCTTGGTCGAATCTG-TTCAAACTTGATAAAGATGATATTGTGCTGA
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAA-TTGATAAAGATGATATTGTGCTTA
* * * * * * * *
417167 TTTTTACCTTGATTTCTGGATTTACAAGTTACTTAACGGGAATTGAATTTATAAGGATTAAATTG
130 TTTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTG
* * * * *
417232 TAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCGTTGTAAAGGATTTTTTTT
195 CAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGA-TTTTTTT
* ** * * * ** *
417297 CCATGAATTAAGGAT-GTTCCTAA-CTAATTTGCTGATTTGATTTTGTGTTTTTCCGATGTTGCG
259 CCATGATTTGTGGATGGTTCC-AAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTG-T
* ** **
417360 GTTTG-TTATCGGTCAAAATGCAAATATGCAAAAATTTAAGGACTCAGTTGCAAAGTTTGTTCCA
322 GATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCA
* *
417424 TGAAATTTCTCATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTACTGATTTGAAA
387 TGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAA
* * * *
417489 ATAATCTAGATGCGTGATGAGGTATTTGCTTGAGA
452 TTAATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * * * *
417524 AAATTCTTGTAAAAATAGTTGAAATATCATTGCATGTATTTGCACCATGATGTTGAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * * * *
417589 TTGTAAATCATTTAGATAACTTGGTCGAATCTATTTGAAATTGATATAGATGATATTGTGCATAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* * * * * *
417654 TTTTGCCTTGATTTCTTGATTTGTAAGTTATTTAATGAGACTTGAAAATATATGGATTAAATTGA
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
* * *
417719 AAAAATTAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAATGGATTTTTTTCC
196 AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCC
* *
417784 ATAATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGAAT
261 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * * *
417849 GATTATGAGTCAAAATGCAAATATGCAAAAGTTTAAGGACTTGGTTGCAAAGTTTGTTTCATGAA
326 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATG-A
* * * * * *
417914 AATTT-TCATTTAGCTGAAACATGATCAACCATATTGACATGTTTTTCTTGTTAATTTGAAATTA
390 AATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTA
*
417978 ATTTAGATGCGTGATGAGGTGTTTGCATTAGA
455 ATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * *
418010 AAATTCTTGTAAAAGTAGGTGAAATTTCATTACATGTATTTGTATCAAGATGCTAAAATGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
*
418075 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTCT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* * * * *
418140 TTTGT--CTCGATTTCATGATTTATATGTTATTTAATGAGAATTGAAATTATAGGGACTAAATTG
131 TTT-TACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTG
* * * * ** *
418203 CAAAAATAAAAAGTCAAGCTTTCTGGCCAAAAGTATTTGATCAAGCCTCATAAAGGATTTTTGTC
195 CAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTC
* * * * * * * * *
418268 CATGATATGTGGATGGTTCCAAACAGATTCGGTGACTTGATTATGTGTGTTTAAGATCTTATGAT
260 CATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGAT
* * ** * *
418333 TGATTATGGGTCAAAATGCAAATACGC-AAAATTTAAGGACTTGGTTGCAAAGTTTAATGCACGA
325 TGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGA
* ** *
418397 AATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCAAATTTTTCTTGCTGGTTTGAAATTA
390 AATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTA
* * * * * * *
418462 AGTTAGAAGCATGTTGAGATGTTTACAAGAGA
455 ATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * *
418494 AAATTCCTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGGTGCTGATTTGTTAAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * * *
418559 TTGCAAATCATTTAGATGGCTGGGTTGAATCTGTTTGAAATTGATAACGATGATATTGTGCTTAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* *
418624 TTTTACCTTGATTTCTTGATTTTTAAGTTATTTAATGAGATTTGAAATTATAGTGATTAAATTGC
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
*
418689 AAAAATGAAAAGTCATCCTTTATGGCCAAAAGTATTTGA-CTGAGCCTTGTAAAGGATTTTCTTT
196 AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATC-GAGCCTTGTAAAGGATTTT-TTT
* *
418753 CCACGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTTATTATGTGTTTTTATGATGTTGTGA
259 CCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
* * * * * * *
418818 TTGATTA-GGATTAAAATGTAAATGTG-AAAAACTTTAAAGACTTGGATGCAAAGTTTGTTCCTT
324 TTGATTAGGGGTCAAAATGCAAATATGCAAAAA-TTTAAGGACTTGGTTGCAAAGTTTGTTCCAT
* * *
418881 GAAATTTCTTATATA-CCTGAAACATGATCAACCATTTAGGCAAGTTTTTCTTGCTGATTTGAAA
388 GAAATTTCTTATTTAGCC-GAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAA
* *
418945 TTAATTTAGATGTGTGATGAGGTGTTTGTATGAGA
452 TTAATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * * *
418980 AAATTCTTGTAAAAGTAGGTGAAATTTCATTACATGTATTTATATCTTGGTGCTGAACTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * * * * *
419045 TTGCAAATCATTTAGATAGCTTGGCCGAATCTATTTTAAACTGATAAAGTTGATATTGTACTTAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
**
419110 TTTTACCTTGATTTC------TA-AA-TTATTTAATGAGATTTGAAATTATAGGGATTAAATAAC
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
* * * *
419167 AAAAACGGAAAGTCATGTTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCC
196 AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCC
* * * *
419232 ATAATTTGTGGATGGTTCCAAGCGGATTTGGTGACTTGATTATGTGTTTCTATGATGTTGTGATT
261 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * * ** *
419297 GATTAGGGGTCAAAATGTAAATATGGAAAAATTTAAAGACTTGGACGCAAAGTTTGTTCCAAGAA
326 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAA
* * * * *
419362 ATTTCTTATCTAGCTGAAACATAACCAACCATTTTGGCATGTTTTTCTTCCTGATTTGAAATTAA
391 ATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
* * * *
419427 TTTAGATGCATGTTGTGTTGTTTGCATGAGA
456 TTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * *
419458 AAATTCTTGTAAATGTAGGTGAAATTTTATTGCATGTATTTGTACCATGATGCTGAATTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* *
419523 TTACAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* * *
419588 TTTTGCCTTGATTTCTTGATTTATAAGTTACTTAATGAGATTTGAAATTATAAGGATTAAATTG-
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
*
419652 AAAACATGAAAAGTCATCCTTTATGGCCAAAAGTATTTGA-CTGAGCCTTGTAAAGGATTTTCTT
196 AAAA-ATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATC-GAGCCTTGTAAAGGATTTT-TT
* * *
419716 TCCACGATCTGTGGATGGTTCCAAGCTGATTTGATGATTTGATTATGTGTTTTTATGATGTTGTG
258 TCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTG
* * * * *
419781 ATTGATTAGGGGTTAAAATGTAAATGTGCAAAAATTTAAAGACTTGGTTGCAAGGTTTGTTCCAT
323 ATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCAT
* * * * *
419846 GAAATTTCTTATTTACCCGAAACATGATCAACCATTTCGACATGTTTTTCATGCTAATTTGAAAT
388 GAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAAT
* * *
419911 TAATTTAGATGTGTGATGAGGTATTTGCATGATA
453 TAATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * * * *
419945 AAATTCTAGTAAAAATAGGT-ATAATTTCATTGCATGTATTTATATCTTGATGCTGAACTGTGGA
1 AAATTCTTGTAAAAGTAGGTGA-AATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGA
* ** *
420009 GTTGCAATTCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGCACTGA
65 GTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTA
* * * * *
420074 CTTTTACCTTGATTTCTTGATTTATAAGTTATATAACGAGAATTGAAATTATAAGGATTAAATTG
130 TTTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTG
* * * * * *
420139 CAAAAAAGGAAAGCCATGCTTTATGTG-CAAAAGTATTTCACCAAGCCTTGTAAAGGATTTTTTT
195 CAAAAATGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGATCGAGCCTTGTAAAGGA-TTTTTT
*
420203 TCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTAATTTGATTATGTGTTTTTATGATGTTGTG
258 TCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTG
** ** * * *
420268 ATTGATTAGGGGTCAAAATATAAATGCGCAAAAATTTAAAGACTTGGTTGCAAGGTTTGATCCAT
323 ATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCAT
* * * * *
420333 GAAAGTTCTTATTTACCCGAAACATAATCAACCATTTTTGCATGTTTTTCTTGCTGATTTGCAAT
388 GAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAAT
* *
420398 TAATTTATATGAGTGATGAGGTGTTTGCATGAGA
453 TAATTTAGATGCGTGATGAGGTGTTTGCATGAGA
* * * * * *
420432 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTGTTTATATCTTAATGTTGAACTGTTGAG
1 AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
* * * *
420497 TTGCAATTCATTTAGATAGCTTGGTCGAATCTGTTAGAAATTGATAAAGATGATATTGTACATAT
66 TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
* * *
420562 TTTTACCATGATTTCTTGATTTTTAAGTTATTTAATGAGACTTGAAA
131 TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAA
420609 ATGAAAGCTC
Statistics
Matches: 6530, Mismatches: 852, Indels: 148
0.87 0.11 0.02
Matches are distributed among these distances:
477 69 0.01
478 345 0.05
479 9 0.00
480 1 0.00
483 194 0.03
484 752 0.12
485 1462 0.22
486 1674 0.26
487 1537 0.24
488 478 0.07
489 9 0.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (486 bp):
AAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAG
TTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTAT
TTTTACCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC
AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCC
ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAA
ATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
TTTAGATGCGTGATGAGGTGTTTGCATGAGA
Found at i:421382 original size:13 final size:13
Alignment explanation
Indices: 421341--421389 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
421331 CCGTTACAAG
421341 CAATGTATCGATA
1 CAATGTATCGATA
*
421354 CAAT-T-T-GCT-
1 CAATGTATCGATA
421363 C-ATGTATCGATA
1 CAATGTATCGATA
421375 CAATGTATCGATA
1 CAATGTATCGATA
421388 CA
1 CA
421390 TTGTCCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
8 2 0.07
9 2 0.07
10 3 0.10
11 3 0.10
12 2 0.07
13 17 0.59
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:421405 original size:33 final size:34
Alignment explanation
Indices: 421341--421410 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
421331 CCGTTACAAG
*
421341 CAATGTATCGATACAATTTGCTCATGTATCGATA
1 CAATGTATCGATACAATTTGCCCATGTATCGATA
421375 CAATGTATCGATAC-A-TTGTCCCATGTATCGATA
1 CAATGTATCGATACAATTTG-CCCATGTATCGATA
421408 CAA
1 CAA
421411 ACAGTGGTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 3 0.09
33 17 0.50
34 14 0.41
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (34 bp):
CAATGTATCGATACAATTTGCCCATGTATCGATA
Found at i:421483 original size:19 final size:19
Alignment explanation
Indices: 421439--421494 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
421429 CTGCCAATCT
*
421439 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAC
*
421459 CATGTATCGATACAATGAG
1 CATGTATCGATACAATGAC
*
421478 CATGTATTGATACAATG
1 CATGTATCGATACAATG
421495 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAC
Found at i:428045 original size:13 final size:13
Alignment explanation
Indices: 428027--428085 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
428017 CAATTTGCTC
*
428027 ATGTATCTATACA
1 ATGTATCGATACA
428040 ATGTATCGATAC-
1 ATGTATCGATACA
*
428052 AT-TATC----CC
1 ATGTATCGATACA
428060 ATGTATCGATACA
1 ATGTATCGATACA
428073 ATGTATCGATACA
1 ATGTATCGATACA
428086 TTATCCCATG
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
7 1 0.03
8 2 0.05
9 4 0.11
11 4 0.11
12 2 0.05
13 25 0.66
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.34
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:428065 original size:20 final size:20
Alignment explanation
Indices: 428040--428102 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
428030 TATCTATACA
428040 ATGTATCGATACATTATCCC
1 ATGTATCGATACATTATCCC
428060 ATGTATCGATAC---A----
1 ATGTATCGATACATTATCCC
428073 ATGTATCGATACATTATCCC
1 ATGTATCGATACATTATCCC
428093 ATGTATCGAT
1 ATGTATCGAT
428103 GAAAACAGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 14
0.72 0.00 0.28
Matches are distributed among these distances:
13 12 0.33
16 1 0.03
17 1 0.03
20 22 0.61
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTATCCC
Found at i:428072 original size:33 final size:33
Alignment explanation
Indices: 428004--428102 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
427994 CCGTTACAAG
* *
428004 CAATGTATCGATACAATT-TGCTCATGTATCTATA
1 CAATGTATCGATAC-ATTAT-CCCATGTATCGATA
428038 CAATGTATCGATACATTATCCCATGTATCGATA
1 CAATGTATCGATACATTATCCCATGTATCGATA
428071 CAATGTATCGATACATTATCCCATGTATCGAT
1 CAATGTATCGATACATTATCCCATGTATCGAT
428103 GAAAACAGTG
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
33 47 0.76
34 15 0.24
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATTATCCCATGTATCGATA
Found at i:428179 original size:19 final size:19
Alignment explanation
Indices: 428135--428190 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
428125 CTGCCAATCT
**
428135 CATGTATCGATACAATTCTC
1 CATGTATCGATACAA-TGAC
*
428155 CATGTATCGATACAATGAG
1 CATGTATCGATACAATGAC
428174 CATGTATCGATACAATG
1 CATGTATCGATACAATG
428191 TATCGATACG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAC
Found at i:428193 original size:13 final size:13
Alignment explanation
Indices: 428175--428199 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
428165 TACAATGAGC
428175 ATGTATCGATACA
1 ATGTATCGATACA
428188 ATGTATCGATAC
1 ATGTATCGATAC
428200 GAAGCACAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:428566 original size:13 final size:13
Alignment explanation
Indices: 428548--428573 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
428538 AAATAGTACC
428548 CAATGTATCGATA
1 CAATGTATCGATA
428561 CAATGTATCGATA
1 CAATGTATCGATA
428574 TACATCTGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:433122 original size:3 final size:3
Alignment explanation
Indices: 433114--433141 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
433104 TCTGAGTCAC
433114 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
433142 TTTCTCTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:434288 original size:21 final size:21
Alignment explanation
Indices: 434262--434316 Score: 87
Period size: 20 Copynumber: 2.7 Consensus size: 21
434252 GTTACAAGCA
434262 ATGTATCGATACAATT-TCCTC
1 ATGTATCGATACAATTATCC-C
434283 ATGTATCGATAC-ATTATCCC
1 ATGTATCGATACAATTATCCC
434303 ATGTATCGATACAA
1 ATGTATCGATACAA
434317 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACAATTATCCC
Found at i:434389 original size:19 final size:19
Alignment explanation
Indices: 434345--434417 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 19
434335 CTGCCAATCT
*
434345 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATAG-C
434365 CATGTATCGATACAATAAG-
1 CATGTATCGATACAAT-AGC
434384 CATGTATCGATACAA-AGC
1 CATGTATCGATACAATAGC
*
434402 ATAATGTATCGATACA
1 --CATGTATCGATACA
434418 TCTGGGTGTG
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
17 2 0.04
19 15 0.32
20 29 0.62
21 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATAGC
Found at i:435621 original size:486 final size:484
Alignment explanation
Indices: 434706--436001 Score: 1877
Period size: 486 Copynumber: 2.7 Consensus size: 484
434696 GATCCTAACA
* ** * *
434706 GAAAATATAGGGATTAAATTCCAAAAATGGAAAGCCATGCTTTATGGCCAAAAGTATTTGATCGA
1 GAAATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGA
*
434771 GCCCTGTAAAGGATTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATG
66 GCCTTGTAAAGGATTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATG
* * ** **
434836 TGTTTTTATGATGTCGTGATTGATTAGGGGTTAAAATGCAAATATGTTAAAATTTATGGACTTGG
131 TGTTTTTATGATAT-GTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGG
* * * * *
434901 TTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTAAAACATTATCAACAATTTTGGGATGTTT
195 TTGCAAAGTTTGTTCCAGGAAATTTCTTATCTAGCTGAAACATTATCAACCATTTTGGCATGTTT
* * * * ** * * * * *
434966 TTCTTGCAGACTTGAAAATAATTTATATGCGTGACGAGGTGTTTCCAAGATAAAATTCTTATAAA
260 TTCTTGCTGATTTGAAATTAATTTAGATGCGTGTTGAGCTGTTTGCATGAGAAAATTCTTGTAAA
* * * *
435031 AGTAGTTGAAATTTCATTGCTTGTATTTGTACCATGATGCTGAATTGTTGAGTTACAAATTATTT
325 AGTAGGTGAAATTTCATTGCATGTATTTGTACCATAATGCTGAATTGTTGAATTACAAATTATTT
* *
435096 AGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTATGCTTATTTTTGCCTTCATT
390 AGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTATGCTTATTATTGCCCTCATT
435161 TCTTGATTTTTAAGTTATTTAACGAGATTT
455 TCTTGATTTTTAAGTTATTTAACGAGATTT
*
435191 GAAATTATAGGGATTAAATTGTAAAAATAAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGA
1 GAAATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGA
*
435256 GCCTTGTAAAGGATTTTTTCCCATGATTTATGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
66 GCCTTGTAAAGGATTTTTT-CCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
*
435321 GTGTTTTTATGATATAGTGATTGATTAGGGGTCAAAATGCAAATTTGCAAAAATTTAAAGACTTG
130 GTGTTTTTATGATAT-GTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTG
* * *
435386 GTTGAAAAGTTTGTTCCAGGGAATTTCTTATCTAGCTGAAACATGATCAACCATTTTGGCATGTT
194 GTTGCAAAGTTTGTTCCAGGAAATTTCTTATCTAGCTGAAACATTATCAACCATTTTGGCATGTT
435451 TTTCTTGCTGATTTGAAATTAATTTAGATGCGTGTTGAGCTGTTTGCATGAGAAAATTCTTGTAA
259 TTTCTTGCTGATTTGAAATTAATTTAGATGCGTGTTGAGCTGTTTGCATGAGAAAATTCTTGTAA
* * * * *
435516 AAGTAGGTGAAATTTTATTTCATGTATTTGTACCATAATGCT-ATATTGTTGAATTGCGACTTAT
324 AAGTAGGTGAAATTTCATTGCATGTATTTGTACCATAATGCTGA-ATTGTTGAATTACAAATTAT
* * * *
435580 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATGAAGATGATATTGTGGTTATTATTGCCCTGA
388 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTATGCTTATTATTGCCCTCA
* *
435645 TTTCTTGATTTTTGAGTTATTTAATGAGATTT
453 TTTCTTGATTTTTAAGTTATTTAACGAGATTT
*
435677 GAAATTATAGGGATAAAATTGTAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGA
1 GAAATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGA
* * * **
435742 GCGTTGTAAAGGATTCTTTTTCCACGATTTGTGGATGGTTCCAAGCTGATTCGACGATTTGATTA
66 GCCTTGTAAAGGA-T-TTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTA
* * *
435807 CGTGTTCTTATG--ATGT-A--G-TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTA
129 TGTGTTTTTATGATATGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTG
* * * *
435866 GTCGCAAAGTTTGTTCTAGGAAATTTCTTATCTATCTGAAATATTATCAACCATTTTGGCATGTT
194 GTTGCAAAGTTTGTTCCAGGAAATTTCTTATCTAGCTGAAACATTATCAACCATTTTGGCATGTT
* * **
435931 TTTCTTGCTGATTTGAAATTAATTTAGATCCGTGTTGTGCTGTTTGCATTCGAAAATTCTTGTAA
259 TTTCTTGCTGATTTGAAATTAATTTAGATGCGTGTTGAGCTGTTTGCATGAGAAAATTCTTGTAA
435996 AAGTAG
324 AAGTAG
436002 ATGATGGTGA
Statistics
Matches: 732, Mismatches: 75, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
480 164 0.22
481 1 0.00
483 1 0.00
484 2 0.00
485 80 0.11
486 429 0.59
487 50 0.07
488 5 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (484 bp):
GAAATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGA
GCCTTGTAAAGGATTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATG
TGTTTTTATGATATGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGT
TGCAAAGTTTGTTCCAGGAAATTTCTTATCTAGCTGAAACATTATCAACCATTTTGGCATGTTTT
TCTTGCTGATTTGAAATTAATTTAGATGCGTGTTGAGCTGTTTGCATGAGAAAATTCTTGTAAAA
GTAGGTGAAATTTCATTGCATGTATTTGTACCATAATGCTGAATTGTTGAATTACAAATTATTTA
GATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTATGCTTATTATTGCCCTCATTT
CTTGATTTTTAAGTTATTTAACGAGATTT
Found at i:437821 original size:486 final size:485
Alignment explanation
Indices: 436020--453611 Score: 19526
Period size: 486 Copynumber: 36.2 Consensus size: 485
436010 GAATTGTTTA
* * *
436020 CAAATTATTT-GATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGTTATTGTACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * *
436084 TGCCATGATTTCTTGATTTATAAGTTTTTTAATGAGGTTTGAAATTATAGGGATCAAAATGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * *
436149 AATGAAAGGTCATGCTTTATGGCTAAAAGTATGTGACCGAGCCTTGTAAA-GATTTTTTTTTTCC
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGA---TTTTTTTCC
* * * * * * * **
436213 ATTATTTATGGTTGGTTCCAAACTAATTTGGTGATTTGATTTTGTGTTTTTATGATGCTGCAATT
193 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA-T
* *
436278 TG-TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTAGCAAAGTTTGTTCCATGA
257 TGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGA
* * * * *
436342 AATTTCTT-TTTAGCCAAAACATGATCAACCAATTTGGGACGTTTTTCTTGCTGAATTGAAATTA
322 AATTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTA
* * *
436406 ATTTAGATGCGTGATGAGGTGTTTGCATGGGAAAATTCTTATAAAATTCA-GTGAAATTTCATTG
386 ATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT-AGGTGAAATTTCATTG
* ** * * * *
436470 CACGTATTCGTATCACGGTACTGAATTGTTCAGTTG
450 CATGTATTTATATCATGATGCTGAATTGTTGAGTTG
* *
436506 CAAATCGTTTAGATAGCTTGGTCGAATCTGTTTCAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
436571 TGCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTACATTGTAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * *
436636 AATGAAAAGTCATGTTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTATTTCCGT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTT-TTTCCAT
* **
436701 GATTTGTGGATGGTTCCAAGCTGATTTAGG-GAATTGACCATGTGTTTTTATGATGTTGTGATTG
195 GATTTGTGGATGGTTCCAAGCTGATTT-GGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
*
436765 AATAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* * * *
436830 TTTCTTATTTACCCAAAACATGATTAACCATTTTGGCATGTTTTTCTTGCTAATTTGAAATTAAT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * *
436895 TTAGATGCGTGATGAGGTGTTTGCATGGGAAAATTCTTGTAAAAGTAAGTGAAATTTCATTGCAC
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* *
436960 GTATTTATACCATAATGCTGAATTGTTGAGTTG
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * *
436993 CAAATTATTCAGATAGTTTGGTCGAATCTGTCTGAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * *
437058 TGCCATGATTTCTTGATTTATATGTTATTTAATGTGATTTGAACTTATAGGGATTAAATCGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * **
437123 AATGAAAAGTCTTGCTTCATGGCCAAAAGTATTTGA-TCGAGCCTTACAAAGGATTTTCTTTCCA
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTT-TTTCCA
* * *
437187 TAATTTGTGGATGCTTCCAAGCTGATTTGGTGATTTGACTATGTGTTTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * *
437252 ATTAGGGGTCAAAATGCAAAAATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTCTTCCATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* * *
437317 TTTCTTATTTGCCGAAACATGACCAGCCATTTTGACATAG-TTTTCTTGCTGATTTGAAATTAAT
324 TTTCTTATTTGCCGAAACATGATCAACCATTTTGGCAT-GTTTTTCTTGCTGATTTGAAATTAAT
*
437381 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCTTTGCAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* * * *
437446 GTATTTGTATAATGATGCTAAATTGTTGAGTTA
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
* * *
437479 CAAATCATTTAGATAGCTTGGTCGAATCTATTCGAAATTGATAATGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* **
437544 TGCCTTGATTTCTTAATTTATAAG-TAACTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
*
437608 AATGAAAAGTCAT-CTTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGTTTTTCTTTCCA
131 AATGAAAAGTCATGC-TTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTT-TTTCCA
* *
437672 -CAGTTTGTGGATGGTTCCAAGCTAATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
194 TGA-TTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * * * * *
437736 GATTAGGGGTTAAAATGTAAATGTGGAAAAATTTAAAGACTTCGATGCAAAGTTTGTTCCATGAA
258 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAA
* * *
437801 ATTTCTTATATGCTCGAAACATGATCAACCATTTAGGCAAGTTTTTCTTGCTGATTTGAAATTAA
323 ATTTCTTATTTGC-CGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
* *
437866 TTTAGATGTGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTACA
387 TTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCA
* *
437931 TGTATTTATATCTTGGTGCTGAATTGTTGAGTTG
452 TGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * *
437965 CAAATCATTTAGATAGCTTGGCCGAATCTGTTTTAAACTGATAAAGATGATATTGTACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * **
438030 TACCTTGATTTCTTGATTTCTAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTATAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * **
438095 AATGGAAAGTCATGCTTTGTGGAGAAAAGTATTTGA-TCGAGCCTTGTAAAGGATTTTTTTCCAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTTTTTCCAT
*
438159 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTGTGATGTTGTGATTGA
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
* * * *** * ** *
438224 TTAGGGGTTAAAATGCAAATACGAAAAAATTTAAAGACTTGGACACAGAGTTTGTTTGAGGAAAT
260 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAAT
* * *
438289 TTCTTATCTAGCTGAAACATGACCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATT
325 TTCTTAT-TTGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATT
* * * * * *
438354 TAGATGCGTGTTGTGCTGTTTGCATGAGAAAATTCTTGTAAAGGTAGGTGAAATTTTATTGCATA
389 TAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATG
* * *
438419 TATTTGTACCATGATGTTGAATTGTTGAGTTAG
454 TATTTATATCATGATGCTGAATTGTTGAGTT-G
*
438452 -AAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTAG-TTATTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGT-GCTTATTT
* * *
438515 TTGCCTTGATTTCTTGATTTATAAGTTACTTAATGAGATTTTAAATTTTAGGGATTAAATTGCAA
65 TTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAA
**
438580 AAATGAAAAGTCACCCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTCTTTCCA
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTT-TTTCCA
* *
438645 CGATTTGTGGATGGTTACAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * * *
438710 ATTAGGGGTTAAAATGTAAATGTGTAAAAATTTTAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* * * *
438775 TTTCTTATTTACCGAAAACATGACCAACCATTTTGGCATG-TTTTCATGCTAATTTGAAATTAAT
324 TTTCTTATTTGCCG-AAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * *
438839 TTAGATGCATGATGAGGTATTTGCATGATAAAATTCTTGTAAAAATAGGTAAAATTTCATTGCAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* * *
438904 GTATTTATATCTTGATGATGAACTGTTGAGTTG
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * ** *
438937 CAATTCATTTAGATAGCTTGTTCGAATCTGTTTCAAATTGAT-AAGATGATATTGCACTTACTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * ** *
439001 TGCCTTGATTTCTTGATTTATAAGTTATTTAACGAGAATTGAAATTAGAAAGATTAAATAGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * * **
439066 AAAGGAAAGCCATGCTTTATGTG-CAAAACTATTTGACCAAGCCTTGTAAAGGATTTTTTTTCCA
131 AATGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACTGAGCCTTGTAAAGGA-TTTTTTTCCA
*
439130 CGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
** * *
439195 ATTAGGGGTCAAAATATAAATGTGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGATCCATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* * * *
439260 GTTCCTATTTACCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGCAATTAAT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA-
* ** *
439325 TTTA-AT-CAGTGACGAGGTGTTTGTGTGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCGTTGC
387 TTTAGATGC-GTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGC
** * *
439388 ATGTATTTATATGTTAATGCTGAACTGTTGAGTTG
451 ATGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * **
439423 CAATTCATTTAGATAGCTTGGTTGAATTTGTTAGAAATTGATAAAGATGATATTGCACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * **
439488 TACCTTGATTTCTTGATTTTTAAGTTATTTAATGAGACTTGAAAATATAGGGATTAAATTTAAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* *
439553 AATGGAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATG
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCATG
* *
439618 ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTTTGTGTTTTTATGATGTCGTGATTGAT
196 ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGAT
* *
439683 TAGGGGTTAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATT
261 TAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAATT
* * * * * * *
439748 TCTTATTTACCTTAAACATGGTTAACCATTTTGGCAGGTTTTTCTTACTAATTTGAAATTAATTT
326 TCTTATTTGCC-GAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTT
* *
439813 AGCTGCGTGATGAGATGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGT
390 AGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGT
* *
439878 ATTTATCTCTTGATGCTGAATTGTTGAGTTG
455 ATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * *
439909 CAATTCATTTAGATAGATTGGTCGAATCTGTTTGAAATTTATAAAGATGATATTATACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
** * * *
439974 CACCTTGATTTCTAGATTTTTAAGTTATTTAATGAGATTTGAAATTGTAGGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* ** *
440039 AAAGAAAAGTCATGCTTTATGGTTAAAAGTATTTAACTGAGCCTTGTAAAGGATTTTTTTCCATG
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCATG
* * * *
440104 ATCTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTTTTATGTTGTGAATGAT
196 ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGAT
* *** **
440169 TA-GGGTCAAAAAGCAAATATATGAAAATTTATGGACTTGGTTGCAAAGTTTGTTCCATGAAATT
261 TAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAATT
** * * *
440233 TGGTATTTAGCC-AAAGCATGATCAACCATTTCGGCATGTTTTTCTTGCTGAGTTGAAAATAATT
326 TCTTATTT-GCCGAAA-CATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATT
* * * * *
440297 TAGATGTGTGATGAGGTGTTT-CTAAGAGAAAATTCTTGTAAAATTAGTTAAAATTTCATTGCAT
389 TAGATGCGTGATGAGGTGTTTGC-ATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* *
440361 GTATTTGTA-CAGTGATACTGAATTGTTGAGTTG
453 GTATTTATATCA-TGATGCTGAATTGTTGAGTTG
*
440394 CAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * *
440459 TGCCTTCATTTCTTAATTTTTAAGTTATTTAACGAGATTTGAAATTATAGGGATTAAATTGTAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
*
440524 AATAAAAAGTCATGCTTTATGGCCAAAAGTATTTGA-TCGAGCCTTGTAAAGGATTTTTTT-CAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTTTTTCCAT
*
440587 GATTTATGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
440652 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCAAT-AAA
260 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCC-ATGAAA
* * **
440716 TTTCTGATCTAGTTGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
324 TTTCTTAT-TTGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * * * *
440781 TTAGATGCCT-ATTGTGCTATTTGCATGAGAAAATTCTTCTAAAAGTAGGTGAAATTTTATTTCA
388 TTAGATGCGTGA-TGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCA
* *
440845 TGTATTTATATGATGATACTGAATTGTTGAGTTG
452 TGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * *
440879 CAAATTATTTAGATAGCTTGGTCGAATCTGTTTAAAATTGATAAAGATGATATTTTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * *
440944 TGCCTTGATTTCTTGATTTTTAGGTTATTTAACGAGATTTGAAATTATCGGGATTAAATTGTAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* **
441009 AATAAAAAGTCATGCTTTATGGCCAAAAGTATTTGA-TCGAGCCTTGTAAAGGATTTTTTTTAAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTTTTTCCAT
* ** *
441073 GATTTATGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTCCAAGTTT
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTT--GTGATT
* * * * * * ** * * * ** * *
441138 GCTCCA--GG--AAATTTC--TTAT-C---TAGCTCAA-ACAT-GAT-CAACCTTTTTTGCATG-
258 GAT-TAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGA
* * * ** *** * * * * * **
441189 --TTT-TT-CTTACTG--ATTTGAT-ATTAATTTAGGTGCCTGTTGTGC-TGTTTGCATGAGAAA
322 AATTTCTTATTTGCCGAAACATGATCAACCATTT-TG-GCATGTTTTTCTTG-CTG-ATTTG-AA
** * * ** * * * * ** *
441246 ATTCTTTTAAAAGTACGTGA--AATTTTATTGCAT--G-TAATTATACG-ATGA-T-GCTG-AA-
382 ATTAATTT-AGA-TGCGTGATGAGGTGT-TTGCATGAGAAAATTCT-TGTAAAAGTAGGTGAAAT
* * * * *
441301 TT-GTTG-A-G---TTACAT-ATTAT--TTAGATAGCTTG-G-T-
443 TTCATTGCATGTATTTATATCATGATGCTGA-ATTG-TTGAGTTG
* * * * * * * * * * * **
441334 CGAATC-TGTTTGA-A-ATTGAT---AT-AG-ATGATATTG-T---GCTTAT-TTTTGCCT-TGA
1 CAAATCAT-TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTT
* **
441385 TT---------TCTTGATTTATAAGTTTTTTAATGAGATTTGAAATTATAGGGATTAAATTATAA
65 TTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAA
* *
441441 AAATGAAAAGTCATGCTTTACGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTCTTTCCA
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTT-TTTCCA
* * *
441506 TGATTTGTCGATGGTTCCAAGCTGATTAGGTGATTTGATTGTGTGTTTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * * *
441571 ATTACGGGTCAAAATGCAAATATGCAAAAATTTCAAGACTTGGTTGTAATGTTTGATCCA-GAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATG-AA
* ** *
441635 ATTTCTTATCTAGTTGAAACATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
323 ATTTCTTAT-TTGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
* * * * * * * *
441700 TTTAGATGCATGTTGTGTTGTTTGCATGGGAAAATTCTTATAAAAGTAGGTGAAATTTTATTGCT
387 TTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCA
** * ** *
441765 TGTATTTGCACCGCGATGCTGAATTGTTGAGTTA
452 TGTATTTATATCATGATGCTGAATTGTTGAGTTG
* *
441799 CAAATTATTTAGA-AGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTACTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * *
441863 TGCGTTGATTTCTTGATTTATAAGTTATATAATGAGATGTGAAATTATAGCGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* *
441928 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTCTTTTTCA
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGA-TTT-TTTTCCA
*
441993 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTACGTGTTTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * * * *
442058 ATTAGTGGTCAAAGTGCAAATATGAAAAAATTGAAGGACTTGGTTGCAAAGTTTGTTCCAAGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* * *
442123 TTTCTTATCTAGCTGAAACATGATCAACCATTTTGCCATGTTTTTCTTGCTGATTTGAAATTAAT
324 TTTCTTAT-TTGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * * *
442188 TTAGATGCGTGAAGAAGTGTTT-CAATGTGAAAATTCTTGTAAAATTAGGTGAAATTTCATTACT
388 TTAGATGCGTGATGAGGTGTTTGC-ATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCA
* * *
442252 TGTATTTGTATCATGGTTCTGAATTGTTGAGTTG
452 TGTATTTATATCATGATGCTGAATTGTTGAGTTG
** * *
442286 CAAATTGTTTATATAGCTTGGTCGAATATGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
442351 TGCATTGATTTCTTGACTTAGAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * *
442416 AATG-AAAGTCATGCTTTAAGGCCAAAAGTATTTGGCCGAGCCTTGTAAAGGAGTTTTTTTTCAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGA-TTTTTTTCCAT
*
442480 GATTTATGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
* * * * *
442545 TTAGGGATCAAAATGTAAATATGCAAAAATTTAAGGAGTTGGTTGCAAAGTTTGTTCCACGAAAT
260 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAAT
* * * *
442610 TTCTTATTTAGCCGAAACAAGATCAACCATTTTGACATGTTTTTCTTGCTGGTTTAAAATTAATT
325 TTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATT
* * * * *
442675 TAGAAGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTAAAATTTCTTTGCATA
389 TAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATG
* * * * * *
442740 TATTTGTTTCATGATGTTGAACTGTTAAGTTA
454 TATTTATATCATGATGCTGAATTGTTGAGTTG
* *
442772 CAAATCATTTAGATAGCTTGGTCAAATCTGTTTGAAATTGATAAAGATAATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * *
442837 TACCTTGATTTCTTGATTTATAAGTTATTTAACGTGATTTGAAATTGTAAGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * *
442902 AAAGAAAAGTCGTGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATG
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCATG
* * * *
442967 ATTTGTGGATGGTTCCAAGCCGATTAGGTGATTTGATTATGTGTCTTTATGATGTTGAGATTGAT
196 ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGAT
* * *
443032 TA-GGGTCAAAATGTAAATATGCAAAATTTTAAAGACTTGGTTGCAAATTTTGTTCCATGAAATT
261 TAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAATT
* * *
443096 TCTTATTTAGCCAAAACATGATCAACCATTTTGGCATATTTTTCTTGCAGATTTGAAATTAATTT
326 TCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTT
* * *
443161 AGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGTTGCAATTTCATTGCATGT
390 AGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGT
* ** * * *
443226 ATTTGTGCCTTAATGTTGAATTGTTGAGTTG
455 ATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * * * * *
443257 CAAATTATTTAAATAGCTTGGTTGAATTTGTTTGAAATTCACAAAAATGATATTGCGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
443322 TGCCTTGATTTCTTGAATTGTAATTTATTTGAA-GAGATTTGAAATTATAGGGATTAAATTGCAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTT-AATGAGATTTGAAATTATAGGGATTAAATTGCAA
* *
443386 AAATGAAAAGTTATGCTTTATGGCCAAAAGTATTTGA-TCAAGCCTTGTAAAGGATTTTTTTCCA
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTTTTTCCA
* ** *
443450 TGATATGTGGATGGTTCCAAATTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * * * **
443515 ATTATGGGTCAAACTGCAAATATGCAAAAATTTAAGGACTTCGTTGCAGAGTTTGTTTGATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* ** *
443580 TTTATTATTTAGTTGAAACATGATCAACCATTTTGGCATGTTTTTCTTGTTGATTTGAAATTAAT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * * * *
443645 TTAGATGTGTGTTGAGATGTTTGCAAGAGAAAATTCTTGTAAAATTAGTTAAAATTTCATTGCAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* * * *
443710 GTATTTGTACCGTGATACTGAATTGTTGAGTTG
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
*
443743 CAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
443808 TGCATTGATTTCTTGACTTAGAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * *
443873 AATG-AAAGTCATGCTTTAAGGCCAAAAGTATTTGGCCGAGCCTTGTAAAGGAGTTTTTTTTCAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGA-TTTTTTTCCAT
* *
443937 GATTTATGGACGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
* * * * *
444002 TTAGGGATCAAAATGTAAATATGCAAAAATTTAAGGAGTTGGTTGCAAAGTTTGTTCCACGAAAT
260 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAAT
* * * *
444067 TTCTTATTTAGCCGAAACAAGATCAACCATTTTGACATGTTTTTCTTGCTGGTTTAAAATTAATT
325 TTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATT
* * * * *
444132 TAGAAGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTAAAATTTCTTTGCATA
389 TAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATG
* * * * * *
444197 TATTTGTTTCATGATGTTGAACTGTTAAGTTA
454 TATTTATATCATGATGCTGAATTGTTGAGTTG
** *
444229 CAAATCATTTAGATAGCTTGGTTAAATCTGTTTGAAATTGATAAAGATAATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * * *
444294 TACCTTGATCTCTTGATTTATAAGTTATTTAACGTGATTTGAAATTGTAAGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * *
444359 AAAGAAAAGTCGTGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATG
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCATG
* * * *
444424 ATTTGTGGATGGTTCCAAGCCGATTAGGTGATTTGATTATGTGTCTTTATGATGTTGAGATTGAT
196 ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGAT
* * *
444489 TA-GGGTCAAAATGTAAATATGCAAAATTTTAAAGACTTGGTTGCAAATTTTGTTCCATGAAATT
261 TAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAATT
* * *
444553 TCTTATTTAGCCAAAACATGATCAACCATTTTGGCATATTTTTCTTGCAGATTTGAAATTAATTT
326 TCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTT
* * *
444618 AGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGTTGCAATTTCATTGCATGT
390 AGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGT
* ** * * *
444683 ATTTGTGCCGTAATGTTGAATTGTTGAGTTG
455 ATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * * * *
444714 CAAATTATTTAAATAGCTTGGTCGAATTTGTTTGAAATTCACAAAAATGATATTGCGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
444779 TGCCTTGATTTCTTGAATTGTAATTTATTTGAA-GAGATTTGAAATTATAGGGATTAAATTGCAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTT-AATGAGATTTGAAATTATAGGGATTAAATTGCAA
* *
444843 AAATGAAAAGTTATGCTTTATGGCCAAAAGTATTTGA-TCAAGCCTTGTAAAGGATTTTTTTCCA
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTTTTTCCA
* * * *
444907 TGATATGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTATGTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * * * **
444972 ATTATGGGTCAAACTGCAAATATGCAAAAATTTAAGGACTTCGTTGCAGAGTTTGTTTGATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* ** *
445037 TTTATTATTTAGTTGAAACATGATCAACCATTTTGGCATGTTTTTCTTGTTGATTTGAAATTAAT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * * * *
445102 TTAGATGTGTGTTGAGATGTTTGCAAGAGAAAATTCTTGTAAAATTAGTTAAAATTTCATTGCAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* * * *
445167 GTATTTGTACCGTGATACTGAATTGTTGAGTTG
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
* *
445200 CAAATTATTTAGATAGCTTGGTTGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
445265 TGCATTGATTTCTTGACTTAGAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * *
445330 AATG-AAAGTCATGCTTTAAGGCCAAAAGTATTTGGCCGAGCCTTGTAAAGGAGTTTTTTTTCAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGA-TTTTTTTCCAT
*
445394 GATTTATGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
* * * * * *
445459 TTAGGGATCAAAATGTAAATATACAAAAATTTAAGGAGTTGGTTGCAAAGTTTGTTCCACGAAAT
260 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAAT
* * * *
445524 TTCTTATTTAGCCGAAACAAGATCAACCATTTTGACATGTTTTTCTTGCTGGTTTAAAATTAATT
325 TTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATT
* * * * * * *
445589 TAGAAGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAATGTAGGTAAAATTTCTTTGCATA
389 TAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATG
* * * * * *
445654 TATTTGTTTCATGATGTTGAACTGTTAAGTTA
454 TATTTATATCATGATGCTGAATTGTTGAGTTG
* * *
445686 CAAATCATTTAGATAGCTTAGTCAAATCTGTTTGAAATTGATAAAGATAATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * **
445751 TACCTTGATTTCTTGATTTATAAGTTATTTAACGTGATTTGAAATTGTAAAGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * *
445816 AAAGAAAAGTCGTGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATG
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCATG
* * * *
445881 ATTTGTGGATGGTTCCAAGCCGATTAGGTGATTTGATTATGTGTCTTTATGATGTTGAGATTGAT
196 ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGAT
* * *
445946 TA-GGGTCAAAATGTAAATATGCAAAATTTTAAAGACTTGGTTGCAAATTTTGTTCCATGAAATT
261 TAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAATT
* * **
446010 TCTTATTTAGCCAAAACATGATCAACCATTTTGGCATATTTTTCTTGCAAATTTGAAATTAATTT
326 TCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTT
* * *
446075 AGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGTTGCAATTTCATTGCATGT
390 AGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGT
* ** * * *
446140 ATTTGTGCCGTAATGTTGAATTGTTGAGTTG
455 ATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * * * *
446171 CAAATTATTTAAATAGCTTGGTCGAATTTGTTTGAAATTCACAAAAATGATATTGCGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * *
446236 TGCCTTGATTTCTTGAATTGTAATTTATTTGAA-GAGATTTGAAATTTTAGGGATTAAATTGCAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTT-AATGAGATTTGAAATTATAGGGATTAAATTGCAA
* *
446300 AAATGAAAAGTTATGCTTTATGGCCAAAAGTATTTGA-TCAAGCCTTGTAAAGGATTTTTTTCCA
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTTTTTCCA
* * *
446364 TGATATGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * * * **
446429 ATTATGGGTCAAACTGCAAATATGCAAAAATTTAAGGACTTCGTTGCAGAGTTTGTTTGATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* **
446494 TTTATTATTTAGTTGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * * * *
446559 TTAGATGTGTGTTGAGATGTTTGCAAGAGAAAATTCTTGTAAAATTAGTTAAAATTTCATTGCAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* * * *
446624 GTATTTGTACCGTGATACTGAATTGTTGAGTTG
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
*
446657 CAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
446722 TGCCTTGATTTCTTGATTT-TAAAGTTATTTAACGAGATTTGAAATTCTAGGGATTAAATTGTAA
66 TGCCTTGATTTCTTGATTTAT-AAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAA
*
446786 AAATAAAAAGTCATGCTTTATGGCCAAAAGTATTTGA-TCGAGCCTTGTAAAGGATTTTTTTCCA
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGATTTTTTTCCA
* *
446850 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAAGTGTTTTTATGATGTTGTGAATG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* *
446915 ATT-TGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* * *
446979 TTTCTTATTTAGCCGAAGCATGATCAACCATTTTGGCATGTTTTTCTTGCTGACTTGAAAATAAT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * *
447044 TTAGATACGTGATGAGGTGTTTGCACGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTACAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* * * *
447109 GCATTCATATCATGGTACTGAATTGTTGAGTTG
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * *
447142 CGAATCGTTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTCCTTACTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * * *
447207 TGCCCTGGTTTCCTGATTTATAAGTTATTTAATGGGATTTGAAATTATAGGGATTGAGTT-CAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * *
447271 AATGAAAAGTCAGGCTTTATGGCCAAAAGTATTTGGCCGAGCCTTGTAAAGGATTTTCTTTCCAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTT-TTTCCAT
* * *
447336 AATTTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAAGTG-TTTTATGATGTTGTGATTC
195 GA-TTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * *
447400 ATTAGGGGTCAAAACAG-AAATATGCAAAAAGTTT-AGGACTTGGCTGCAATGTTTGTTCCATGA
259 ATTAGGGGTCAAAA-TGCAAATATGCAAAAA-TTTAAAGACTTGGTTGCAAAGTTTGTTCCATGA
* * *
447463 AATTTCTTATTTAGCCGAAACAAGATCAACCATTTTGACATGTTTTTCTTGCTAATTTGAAATTA
322 AATTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTA
*
447528 ATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAATAGGTGAAATTTCATTGC
386 ATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGC
* * * * *
447593 ATGTATTTATATCTTGGTGCCGAACTATTGAGTTG
451 ATGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * *** *
447628 CAATTCATTTAGATAGCTTGGCCGAATCTGTTTGAAATTGATAAAGTTGATATTGCAATTACTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * * * *
447693 TACATTAATTTCTTGATTTATAAGTTATTAAACGAGAATTGAAATTATAAGGATTAAATTGCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * * **
447758 AAAGGAAAGCCGTGCTTTATGTG-CAAAAGTATTTGACCAAGCCTTGTAAAGGATTTTTTTTCCA
131 AATGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACTGAGCCTTGTAAAGGA-TTTTTTTCCA
** * * *
447822 CAATTTGTGGATGGTTCCAAGCTAATTTGGTGATTTGATTATTTGTCTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * *
447887 ATTAGGGGTCAAAATGTAAATGTGCAAAAATTTAAAGACCTAGTTGCAAAGTTTGTTCCATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* * * * *
447952 GTTCTTATTTACCCGAAACATGATCAACCATTTTTGCATGTCTTTCTTGCTGATTT-AAGATTAC
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAA-ATTAA
* *
448016 TTTAGATGAGTGATGAGGTGTTTGCATGAGAAAATTATTGTAAAAGTAGGTGAAATTTCATTGCA
387 TTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCA
* * *
448081 TGTATTTATATCTTCATGTTGAATTGTTGAGTTG
452 TGTATTTATATCATGATGCTGAATTGTTGAGTTG
* *
448115 CAATTCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * *
448180 TACCTTGATTTCTTGACTTT-TAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATGGCAA
66 TGCCTTGATTTCTTGA-TTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAA
* * * * **
448244 ATAAAG-AAAGCCACGCTTTATGTG-AAAAAGTATTTGACCAAGCCTTGTAAAGGATTTTTTTTT
130 A-AATGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACTGAGCCTTGTAAAGGA--TTTTTTT
* ** * * *
448307 CCACGATTTGTGGATGGTTTGAAGCTAATTTGGGGATTTGATTATGTATTTTTATGATGTTGTGA
191 CCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGA
** *
448372 TTGATTAGGGGTCAAAATATAAATGTGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATG
256 TTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATG
* * * *
448437 AAAGTTCTTATTTACTCGAAACATGATCAGCCATTTTGGCATGTTTTTCTTGCTAATTTGAAATT
321 AAATTTCTTATTTGC-CGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATT
* * * * *
448502 AATTTAGATGAGTGTTGAGGTGTTTGCATGAGAAAATTCTTGCAAAAGTCGGTGAAATTTCATTA
385 AATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTG
* * *
448567 CATGTATTTATATCTTGATGTTGAATTGTTGTGTTG
450 CATGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * **
448603 CAATTCATTTAGATAGCTTTGTCGAATCAATTTGAAATTGAT-AAGATGATATTGTAG-TTATTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGT-GCTTATTT
* * * * * *
448666 TTACCTTGGTTTCCTGATTTTTAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTACAA
65 TTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAA
* * * ** *
448731 AAAAGGAAAGCCATGCTTTATGTG-CAAAAGTATTTGACCAAGCCTTGTAAAGTATTTTTTTCCA
130 AAATGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCC-
* *
448795 AT-ATTTGTGGATGGTTCCAAGTTGATTTGGTGATTTGATTATGTGTTTATATGATGTTGTGATT
193 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * *
448859 GATTAGGGGTCAAAATGTAAATGTGCAAAAATTTAAAGACTTGGTTGCAAAGTTTATTCCATGAA
258 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAA
* * * *
448924 AGTTCTTATTTACCCGAAACATGATCAGCCATTTTGGCATGTTTTTCTTGCTAATTTGAAATTAA
323 ATTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
* * * *
448989 TTTAGATGAGTGTTGAGGTGTTTGCATGAGAAAATTCTTG-AACAAGTCGGTGAAATTTCATTAC
387 TTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAA-AAGTAGGTGAAATTTCATTGC
* **
449053 ATGTATTTATATCTTGATGCTGAATTGTTGTCTTG
451 ATGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * **
449088 CAATTCATTTAGATAGCTTAGTCGAATCAATTTGAAATTGATAAAGATGATATTGTAG-TTATTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGT-GCTTATTT
* * * * * *
449152 TTACCTTGGTTTCCTGATTTTTAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTACAA
65 TTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAA
* * * ** *
449217 AAAAGGAAAGCCATGCTTTATGTG-CAAAAGTATTTGACCAAGCCTTGTAAA-GTTATTTTTTCC
130 AAATGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACTGAGCCTTGTAAAGGAT-TTTTTTCC
* * *
449280 AAT-ATTTGTGCATGGTTCCAAGCAGATTTGGTGATTTGATTATGTGTTTATATGATGTTGTGAT
193 -ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGAT
* *
449344 TGATTAGGGGTCAAAATGTAAATGTGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGA
257 TGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGA
* *
449409 AAGTTCTTATTTACCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTA
322 AATTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTA
* * * *
449474 ATCTAGATGAGTGATGAGGTGTTTGCATGAAAAAATTCTTGTAGAAGTAGGTGAAATTTCATTGC
386 ATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGC
* * * *
449539 TTGTATTTATATCTTGATGTTGAACTGTTGAGTTG
451 ATGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * * *
449574 CAATTCATTTAGATAGCTTGGTCGAATCTGTTTGTAATTAATAAAGTTGATGTTGTACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * * *
449639 TACCTTGATTTTTTTATTTTTAAGTTATTTAATGAGATTTGAAAATATAGGGATTAAATTCCAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * *
449704 AATGGAAAGTCATGCTTTATAGCCAAAAGTATTCGACCGAGCCTT-TCAAAGGATTTTTTTCCAT
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGT-AAAGGATTTTTTTCCAT
* *
449768 GATTTGTGGATGGTTCCAAGTTTATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
* * *
449833 TTAGGGGTTAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTATGAAAT
260 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAAT
* * * * *
449898 TTCTTATTTACCCAAAACATGGTTAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAAATAATT
325 TTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATT
* * * * * *
449963 TAGATGCGTGATGAGGTGTTTCCAAGAGAAAATTGTTGTAAAAGTAGTTGAAATTTTATTCCATG
389 TAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATG
** * *
450028 TATTTGCACCATGATGCTGAATTGTTGAGTTA
454 TATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * *
450060 CAAATTATTTAGATAGCTTAGTCGAATTTGTTTGAAATTGATAATGATGATATTGTGCGTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * *
450125 TGCGTTGAATTCTTTATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGTTTAAATTACAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC-AA
450190 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGA-TCGAGCCTTGTAAAGGATTTTTTTTCC
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACT-GAGCCTTGTAAAGGA-TTTTTTTCC
450254 ATGATTTGTGGATGGTTCCAAGC-------------------T-TGTTTTTATGATGTTGTGATT
193 ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * * *
450299 AATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGCTGCAAAGTTTGTTCCAAGAA
258 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAA
* * * *
450364 ATTTTTTATTTACCCGATACATGATCAGCCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
323 ATTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
* * *
450429 TTTAGATGAGTGATGAGGTGTTTCCATGAGAAAATTCTTGTAAAAGTCGGTGAAATTTCATTGCA
387 TTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCA
* *
450494 TGTATTTATATCTTGATGCTGAACTGTTGAGTTG
452 TGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * ** * *
450528 CAATTCATTTAAATAGCTTGGTCGAATCAATTTGAAATTGATAAAGA-GATGTTGTACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * *
450592 TACCTTGATTTCTTGATTTTTAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTACAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * ** *
450657 GAA-GGAAAGCCATGCTTTATGTG-CAAAAGTATTTGACCAAGCCTTGAAAAGGATTTTTTTCCA
131 -AATGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCA
450720 CT-ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
194 -TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATT
* * * *
450784 GATTAGGGGTCAAAATGTAAATGTGCAAAATTTTAAAGACTTGGTTGCAAAGTTTGTCCCATGAA
258 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAA
* *** *** * *** * * ***** * *
450849 AGTTCTTATTTAATG-ATGTTG-TGATTGA-TTAGG---GGTCAAAATG-TAAATGTGCAAA--A
323 ATTTCTTATTTGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCT-GATTTG-AAATTA
* * * * * * * * ** * *
450905 TTTTA-AAGACTTGGTTGCAAAGT-TTGTCCCAT--GAAAGTTCTTATTTACCCAAAACATGATC
386 ATTTAGATG-CGT-GATG--AGGTGTT-T-GCATGAGAAAATTC-T-TGTA---AAAGTA-GGTG
* * * * * * *
450966 AACCATTT--TGGCATGTTTTTCT-TGC-TGAT-TTGAAATTAATTTAGATG
439 AA--ATTTCATTGCATGTATTTATAT-CATGATGCTG-AATT-GTTGAGTTG
* * * * * * * * * *
451013 --AGTGA-TGAGGT-GTTTGCAT-GAAATTTTTTTTGTAAA-AG-TAGGAA-AT-TTCATTGCAT
1 CAAATCATTTAGATAGCTTG-GTCG-AA-TCTGTTTG-AAATTGATA--AAGATGAT-ATTG--T
* * ** ** * * ** *
451069 GTAATTATATCTTGATGTTGAACTGTTGAGTTGCAA-TTCATTTACATAGCTCGGTCGAGTCTGT
57 G--CTTAT-TTTTG-CCTTGATTTCTTGATTTATAAGTT-ATTT--A-A------T-GAG---AT
** * * ** * *** ** * ***** *
451133 TTGAAATTGATAAAG-TTGATATTGTACTTATTTTTACCTCGAT--TTTTTGATTTTTATGTTAT
104 TTGAAATT-ATAGGGATT-AAATTGCA-AAAATGAAAAGTC-ATGCTTTATG-GCCAAAAG-TAT
* * ** * *** * **
451195 ATGA-AGAGATTTGAAAATATAGGGATTAAATTCCAAAAATGGAAAGTCATGCTTTATGG--CCA
163 TTGACTGAGCCTTG----TA-AAGGATTTTTTTCC----AT-G--A-T-TTG-TGGATGGTTCC-
* ** * * * * *
451257 AAAG-T-ATTTGACCGAGCCTTGCA-AAGGATTTTTTTCCATGAT-TTGTAGA-TGGTTCCA-AG
212 -AAGCTGATTTG---GTGATTTG-ATTATG-TGTTTTT--ATGATGTTGT-GATTGATT--AGGG
* * ** *** * *** * * * * ** **
451316 CT-GATTTGGTGATTTG-ATTATGTGTTTTTATGATGTTGTGATTG-ATTAG-GGGTTAAAATGC
266 GTCAAAATGCAAATATGCA--A--AAATTTAAAGA-CTTG-G-TTGCA-AAGTTTGTT-CCATG-
* ** ** * * *** ** ** * **
451377 AAATATGCAAAAATTT-AAG-GACTATGTTGCAA--AGTTTGTTTTATGAAATTTCTTATTTACC
321 AAAT-TTC--TTATTTGCCGAAAC-ATGAT-CAACCA-TTT-TGGCATG-TTTTTCTTGCTGATT
** * ** * * ** * ** *
451438 CAAAACATGGTTAACCAT-TTTGGCTTG-TTTTTCTTGC-TGAGTTGAAAATAAT-TTAGATGCA
378 TGAAA-TTAATTTA-GATGCGT-G-ATGAGGTGT-TTGCATGA---GAAAAT--TCTT-G-T--A
* * * * * * * * * * *
451499 TGATGAGGTGTTTCCAAGAGAAAATTC-TTGTAAAAGTAGTTGAAAT-TTTATTCCATG--TCT-
429 --A--A--AG--T--AGGTGAAATTTCATTG--CATGTA-TTTATATCATGA-TGC-TGAAT-TG
451559 TTGCACCGTGATG
478 TTG-A--GT--TG
* ** * * ** * * * *
451572 CTGAATTGTTGAGTTA-CAAATTATTTAGATAGCTTGGTCGAATCTATTTGAAGTTGATAAAGAT
1 C-AAATCATTTAGATAGC---TT-GGTCGA-ATC-TGTTTGAA---A--T-----TGATAAAGAT
* * * *
451636 GATATTGTGCATATTTTTGCGTTGAATTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTAT
49 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTAT
* * *
451701 AGGGATTAAATTCCAAAAATGAAAAGTCAAGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTA
114 AGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTA
* *
451766 AAGGATTTTTTTTCCATGATTGGTGG-TCGGTTCCAAGCTGATTTGGTGATTTGATTACGTGTTT
179 AAGGA-TTTTTTTCCATGATTTGTGGAT-GGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTT
* *
451830 TTATGATGTTGTGATTAATTAGGGGTAAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCA
242 TTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCA
* *
451895 AAGTTTGTTCCATGAAATCTT-TTATTTAG-CTAAAGCATGATCAAGCATTTTGGCATGTTTTTC
307 AAGTTTGTTCCATGAAAT-TTCTTATTT-GCCGAAA-CATGATCAACCATTTTGGCATGTTTTTC
* * * * *
451958 TTGCTAATTTGAAATTAATTTAGATGCGTGAAGAAGTGTGTGCATGTGAAAATTCTTGTAAAA-T
369 TTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT
* * * * * *
452022 CAAGTGAAATTTCATTACCTGTATTTGTATCATGGTCCTGAATTGTTGAGTTG
434 -AGGTGAAATTTCATTGCATGTATTTATATCATGATGCTGAATTGTTGAGTTG
*
452075 CAAATCGTTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * * *
452140 TGCCTTTATTTCTTCACTTATAAGTTATTTAATGAGATTTGAAAATATAGGGATTAAATTGTAAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
* * * * *
452205 AATG-AAAGTCGTGCCTTATGGCCCAAAGTATTTGGCCT-AGCCTTGTAAAGGAATTTTTTTTCA
131 AATGAAAAGTCATGCTTTATGGCCAAAAGTATTT-GACTGAGCCTTGTAAAGG-ATTTTTTTCCA
* * *
452268 TGATTTGTAGATGGTT-AAAGTTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTG
* * * * * *
452332 ATT-----T---GACGTAAATATGCAAAAAATTAAGGACTTGGTTGCAATGTTTGTTCCATGAAA
259 ATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA
* **
452389 TTTCTTATTTAGCTGAAACATGATCAACCATTTTCACATGTTTTTCTTGCTGATTTGAAATTAAT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * * * *
452454 TTAGATGCATGATAATGTGTTTGCAAGGGAAAATTCTTGTAAAAGTAGGTGAAATTTCTTTGAAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* * * * *
452519 ATATTTGTATCATAATGCTGAATTGTTAAGTTA
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * *
452552 CAAATCAATTA-AGTAGCTTGGTCAAATCTGTTTCAAATTGATAAAGATAATATTGTGCTTATTT
1 CAAATCATTTAGA-TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTT
* ** * * *
452616 TTACCTTGATTTCTTGATTTATAAGTTATTTAACAAGAGTTGAAATTGTAAGGATTAAATTGCAA
65 TTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAA
* **
452681 AAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGATTTTTTTCCAC
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCA-
452746 T-ATTTGTGGATGGTTCCAAGCTGATTTGG-GTATTTGATTATGTGTTTTTATGATGTTGTGATT
194 TGATTTGTGGATGGTTCCAAGCTGATTTGGTG-ATTTGATTATGTGTTTTTATGATGTTGTGATT
* *
452809 GATTAGGGGTCAAAATGTAAATTTGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAA
258 GATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAA
* *
452874 AGTTCTTATTTGCCCGAAACATGACCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
323 ATTTCTTATTTG-CCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAA
* * * *
452939 TTTAGATGAGTGATGAGGTGTTTACATAAGAAAATTCTTGTGAAAGTAGGTGAAATTTCATTGCA
387 TTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCA
* * * *
453004 TATATTTATATCTTGATGTTGAACTGTTGAGTTG
452 TGTATTTATATCATGATGCTGAATTGTTGAGTTG
* * * * *
453038 CAATTCATTTAGATAACTTGGTCGAATCTGTTTGAAATTGATAATGTTGATATTGTACTTATTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
* * * *
453103 TACCTTGATTTTTTGATTTTTAAGTTATTTAATGAGATTTGTAAA-TATAGGGATTAAATTCCAA
66 TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTG-AAATTATAGGGATTAAATTGCAA
* * *
453167 AAATGGAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGCAAAGGATTTTTTTCCAT
130 AAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCAT
*
453232 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTTTGTGTTTTTATGATGTTGTGATTGA
195 GATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGA
* * *
453297 TTAGGGGTTAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTATGAAAT
260 TTAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAA-
* * * * * * * *
453362 TTTGTTATTTACCCAAAACATGGTTAACCATTTTGGCATGTTTTTCTTGCTGACTTGAAAATACT
324 TTTCTTATTT-GCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAAT
* * * * *
453427 TTAGATGCGTCATGAGGTGTTTCCATGAGAAAATTCTTGTAAAAGTAGTTGAAATTTTATTCCAT
388 TTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCAT
* ** * * *
453492 GGATTTGCACCATGATGCTGAATTGTTAAGTTA
453 GTATTTATATCATGATGCTGAATTGTTGAGTTG
* * *
453525 CAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATACAGATGATGTTGTGCTT-TTTT
1 CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
** *
453589 TGTGTTGAATTCTTGATTTATAA
66 TGCCTTGATTTCTTGATTTATAA
453612 TTGATATAAC
Statistics
Matches: 14613, Mismatches: 2031, Indels: 924
0.83 0.12 0.05
Matches are distributed among these distances:
431 1 0.00
432 5 0.00
433 104 0.01
434 58 0.00
435 5 0.00
437 3 0.00
438 1 0.00
441 5 0.00
442 6 0.00
443 10 0.00
444 12 0.00
447 8 0.00
448 16 0.00
449 12 0.00
450 9 0.00
451 17 0.00
452 9 0.00
453 13 0.00
454 4 0.00
455 10 0.00
456 6 0.00
457 4 0.00
458 8 0.00
459 5 0.00
461 4 0.00
462 6 0.00
463 5 0.00
464 5 0.00
465 41 0.00
466 53 0.00
467 80 0.01
468 273 0.02
469 20 0.00
470 8 0.00
471 17 0.00
472 10 0.00
473 6 0.00
474 1 0.00
475 6 0.00
476 20 0.00
477 329 0.02
478 105 0.01
479 16 0.00
480 6 0.00
481 16 0.00
482 12 0.00
483 19 0.00
484 153 0.01
485 3414 0.23
486 6267 0.43
487 2316 0.16
488 485 0.03
489 8 0.00
490 17 0.00
492 2 0.00
493 1 0.00
494 1 0.00
497 6 0.00
498 2 0.00
499 4 0.00
500 5 0.00
502 10 0.00
503 15 0.00
504 16 0.00
505 11 0.00
506 10 0.00
507 9 0.00
508 8 0.00
509 12 0.00
510 13 0.00
513 1 0.00
514 1 0.00
515 1 0.00
517 2 0.00
518 8 0.00
519 4 0.00
520 8 0.00
521 8 0.00
522 10 0.00
523 17 0.00
524 16 0.00
525 1 0.00
526 11 0.00
527 10 0.00
528 9 0.00
529 23 0.00
530 10 0.00
531 10 0.00
532 9 0.00
533 15 0.00
534 6 0.00
535 6 0.00
536 6 0.00
537 1 0.00
538 10 0.00
539 19 0.00
540 12 0.00
541 11 0.00
542 14 0.00
543 6 0.00
544 15 0.00
545 2 0.00
546 2 0.00
547 2 0.00
548 3 0.00
551 7 0.00
552 10 0.00
553 2 0.00
554 6 0.00
555 13 0.00
556 16 0.00
557 15 0.00
558 13 0.00
559 2 0.00
561 3 0.00
562 2 0.00
563 5 0.00
566 6 0.00
567 5 0.00
568 1 0.00
569 2 0.00
571 19 0.00
572 6 0.00
573 3 0.00
575 2 0.00
576 2 0.00
577 7 0.00
578 3 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (485 bp):
CAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTT
TGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA
AATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACTGAGCCTTGTAAAGGATTTTTTTCCATG
ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGAT
TAGGGGTCAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAATT
TCTTATTTGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTA
GATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTA
TTTATATCATGATGCTGAATTGTTGAGTTG
Found at i:443380 original size:971 final size:971
Alignment explanation
Indices: 441132--453611 Score: 14735
Period size: 971 Copynumber: 12.8 Consensus size: 971
441122 ATGATGTTCC
* * * * *
441132 AAGTTTGCTCCAGGAAATTTCTTATCTAGCTC-AAACATGATCAACCTTTTTTGCATGTTTTTCT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGC-CGAAACATGATCAACCATTTTGGCATGTTTTTCT
* * * * * * * *
441196 TACTGATTTGATATTAATTTAGGTGCCTGTTGTGCTGTTTGCATGAGAAAATTCTTTTAAAAGTA
65 TGCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTA
* * * * * * *
441261 CGTGAAATTTTATTGCATGTAATTATA-CGATGATGCTGAATTGTTGAGTTACATATTATTTAGA
130 GGTGAAATTTCATTGCATGTATTTGTATC-ATGATGTTGAATTGTTGAGTTGCAAATTATTTAGA
*
441325 TAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
194 TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
* **
441390 TGATTTATAAGTTTTTTAATGAGATTTGAAATTATAGGGATTAAATTATAAAAATGAAAAGTCAT
259 TGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATG-AAAGTCAT
* *
441455 GCTTTACGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTCTTTCCATGATTTGTCGATGG
323 GCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTT-TTTCCATGATTTGTGGATGG
* * *
441520 TTCCAAGCTGATTAGGTGATTTGATTGTGTGTTTTTATGATGTTGTGATTGATTACGGGTCAAAA
387 TTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAA
* * * * *
441585 TGCAAATATGCAAAAATTTCAA-GACTTGGTTGTAATGTTTGATCCA-GAAAATTTCTTATCTAG
452 TGTAAATATGCAAAAATTT-AAGGACTTGGTTGCAAAGTTTGTTCCATG-AAATTTCTTATTTAG
** * * *
441648 TTGAAACATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGT
515 CCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGA
* * * * * * * * *
441713 TGTGTTGTTTGCATGGGAAAATTCTTATAAAAGTAGGTGAAATTTTATTGCTTGTATTTGCACCG
580 TGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCA
* * *
441778 CGATGCTGAATTGTTGAGTTACAAATTATTTAGA-AGCTTGGTCGAATCTGTTTGAAATTGATAA
645 TGATGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAA
* * * * * *
441842 AGATGATATTGTGCTTACTTTTGCGTTGATTTCTTGATTTATAAGTTATATAATGAGATGTGAAA
710 AGATGATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAA
*
441907 TTAT-AGCGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCC
775 TTATAAG-GATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCC
* *
441971 TTGTAAAGGATTTTCTTTTTCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTACG
839 TTGTAAAGGA-TTT-TTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATG
* * * * * *
442036 TGTTTTTATGATGTTGTGATTGATTAGTGGTCAAAGTGCAAATATGAAAAAATTGAAGGACTTGG
902 TGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGG
442101 TTGCA
967 TTGCA
* * * *
442106 AAGTTTGTTCCAAGAAATTTCTTATCTAGCTGAAACATGATCAACCATTTTGCCATGTTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
* * * * *
442171 GCTGATTTGAAATTAATTTAGATGCGTGAAGAAGTGTTT-CAATGTGAAAATTCTTGTAAAATTA
66 GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGC-ATGAGAAAATTCTTGTAAAAGTA
* * * * *
442235 GGTGAAATTTCATTACTTGTATTTGTATCATGGT-TCTGAATTGTTGAGTTGCAAATTGTTTATA
130 GGTGAAATTTCATTGCATGTATTTGTATCATGATGT-TGAATTGTTGAGTTGCAAATTATTTAGA
* *
442299 TAGCTTGGTCGAATATGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCATTGATTTCT
194 TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
* *
442364 TGACTTAGAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAGTCATG
259 TGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAGTCATG
* * * *
442429 CTTTAAGGCCAAAAGTATTTGGCCGAGCCTTGTAAAGGAGTTTTTTTTCATGATTTATGGATGGT
324 CTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGT
*
442494 TCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGATCAAAAT
388 TCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAAT
* *
442559 GTAAATATGCAAAAATTTAAGGAGTTGGTTGCAAAGTTTGTTCCACGAAATTTCTTATTTAGCCG
453 GTAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCG
* * * * *
442624 AAACAAGATCAACCATTTTGACATGTTTTTCTTGCTGGTTTAAAATTAATTTAGAAGCGTGATGA
518 AAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGA
* * * * *
442689 GGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTAAAATTTCTTTGCATATATTTGTTTCATGA
583 GGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGA
* * * * *
442754 TGTTGAACTGTTAAGTTACAAATCATTTAGATAGCTTGGTCAAATCTGTTTGAAATTGATAAAGA
648 TGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGA
* * *
442819 TAATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGTGATTTGAAATTG
713 TGATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTA
*
442884 TAAGGATTAAATTGCAAAAAAGAAAAGTCGTGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGT
778 TAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGT
* * *
442949 AAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCCGATTAGGTGATTTGATTATGTGTCTT
843 AAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTT
* *
443014 TATGATGTTGAGATTGATTA-GGGTCAAAATGTAAATATGCAAAATTTTAAAGACTTGGTTGCA
908 TATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGCA
* * *
443077 AATTTTGTTCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATATTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
*
443142 GCAGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
66 GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
* * ** * * *
443207 TTGCAATTTCATTGCATGTATTTGTGCCTTAATGTTGAATTGTTGAGTTGCAAATTATTTAAATA
131 GTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAGATA
* * * * * *
443272 GCTTGGTTGAATTTGTTTGAAATTCACAAAAATGATATTGCGCTTATTTTTGCCTTGATTTCTTG
196 GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTG
* * * *
443337 AATTGTAATTTATTTGAA-GAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTTATG
261 ATTTATAAGTTATTT-AATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATG-AAAGTCATG
* * *
443401 CTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTCCATGATATGTGGATGGTT
324 CTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTT
** * * *
443466 CCAAATTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAACTG
389 CCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATG
* * * ** * **
443531 CAAATATGCAAAAATTTAAGGACTTCGTTGCAGAGTTTGTTTGATGAAATTTATTATTTAGTTGA
454 TAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGA
* * *
443596 AACATGATCAACCATTTTGGCATGTTTTTCTTGTTGATTTGAAATTAATTTAGATGTGTGTTGAG
519 AACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAG
* * * * * * *
443661 ATGTTTGCAAGAGAAAATTCTTGTAAAATTAGTTAAAATTTCATTGCATGTATTTGTACCGTGAT
584 GTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGAT
* *
443726 ACTGAATTGTTGAGTTGCAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
649 GCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
* * * * *
443791 GATATTGTGCTTATTTTTGCATTGATTTCTTGACTTAGAAGTTATTTAATGAGATTTGAAATTAT
714 GATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTAT
* * * *
443856 AGGGATTAAATTGCAAAAATG-AAAGTCATGCTTTAAGGCCAAAAGTATTTGGCCGAGCCTTGTA
779 AAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTA
* * *
443920 AAGGAGTTTTTTTTCATGATTTATGGACGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTT
844 AAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTT
* * *
443985 TATGATGTTGTGATTGATTAGGGATCAAAATGTAAATATGCAAAAATTTAAGGAGTTGGTTGCA
908 TATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGCA
* * *
444049 AAGTTTGTTCCACGAAATTTCTTATTTAGCCGAAACAAGATCAACCATTTTGACATGTTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
* * * * *
444114 GCTGGTTTAAAATTAATTTAGAAGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAG
66 GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
* * * * * * * *
444179 GTAAAATTTCTTTGCATATATTTGTTTCATGATGTTGAACTGTTAAGTTACAAATCATTTAGATA
131 GTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAGATA
** * * *
444244 GCTTGGTTAAATCTGTTTGAAATTGATAAAGATAATATTGTGCTTATTTTTACCTTGATCTCTTG
196 GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTG
* * * * * *
444309 ATTTATAAGTTATTTAACGTGATTTGAAATTGTAAGGATTAAATTGCAAAAAAGAAAAGTCGTGC
261 ATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATG-AAAGTCATGC
444374 TTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTC
325 TTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTC
* * * *
444439 CAAGCCGATTAGGTGATTTGATTATGTGTCTTTATGATGTTGAGATTGATTA-GGGTCAAAATGT
390 CAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGT
* * * *
444503 AAATATGCAAAATTTTAAAGACTTGGTTGCAAATTTTGTTCCATGAAATTTCTTATTTAGCCAAA
455 AAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
* * *
444568 ACATGATCAACCATTTTGGCATATTTTTCTTGCAGATTTGAAATTAATTTAGATGCATGATGAGG
520 ACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGG
* * ** * *
444633 TGTTTGCATGAGAAAATTCTTGTAAAAGTAGTTGCAATTTCATTGCATGTATTTGTGCCGTAATG
585 TGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATG
* * * * * * *
444698 TTGAATTGTTGAGTTGCAAATTATTTAAATAGCTTGGTCGAATTTGTTTGAAATTCACAAAAATG
650 CTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATG
* * * * *
444763 ATATTGCGCTTATTTTTGCCTTGATTTCTTGAATTGTAATTTATTTGAA-GAGATTTGAAATTAT
715 ATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTT-AACGAGATTTGAAATTAT
* * * * *
444827 AGGGATTAAATTGCAAAAATGAAAAGTTATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTA
779 AAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTA
* * * *
444892 AAGGATTTTTTTCCATGATATGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTATGTTT
844 AAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTT
* * * * *
444957 ATGATGTTGTGATTGATTATGGGTCAAACTGCAAATATGCAAAAATTTAAGGACTTCGTTGCA
909 ATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGCA
* ** * **
445020 GAGTTTGTTTGATGAAATTTATTATTTAGTTGAAACATGATCAACCATTTTGGCATGTTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
* ** * * * *
445085 GTTGATTTGAAATTAATTTAGATGTGTGTTGAGATGTTTGCAAGAGAAAATTCTTGTAAAATTAG
66 GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
* * * * **
445150 TTAAAATTTCATTGCATGTATTTGTACCGTGATACTGAATTGTTGAGTTGCAAATTATTTAGATA
131 GTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAGATA
* *
445215 GCTTGGTTGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCATTGATTTCTTG
196 GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTG
* *
445280 ACTTAGAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAGTCATGCT
261 ATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAGTCATGCT
* * * *
445345 TTAAGGCCAAAAGTATTTGGCCGAGCCTTGTAAAGGAGTTTTTTTTCATGATTTATGGATGGTTC
326 TTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTC
*
445410 CAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGATCAAAATGT
390 CAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGT
* * *
445475 AAATATACAAAAATTTAAGGAGTTGGTTGCAAAGTTTGTTCCACGAAATTTCTTATTTAGCCGAA
455 AAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
* * * * * *
445540 ACAAGATCAACCATTTTGACATGTTTTTCTTGCTGGTTTAAAATTAATTTAGAAGCGTGATAAGG
520 ACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGG
* * * * * *
445605 TGTTTGCAAGAGAAAATTCTTGTAAATGTAGGTAAAATTTCTTTGCATATATTTGTTTCATGATG
585 TGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATG
* * * * * * *
445670 TTGAACTGTTAAGTTACAAATCATTTAGATAGCTTAGTCAAATCTGTTTGAAATTGATAAAGATA
650 CTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATG
* *
445735 ATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGTGATTTGAAATTGTA
715 ATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTATA
* *
445800 AAGATTAAATTGCAAAAAAGAAAAGTCGTGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAA
780 AGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAA
* * *
445865 AGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCCGATTAGGTGATTTGATTATGTGTCTTTA
845 AGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTA
* *
445930 TGATGTTGAGATTGATTA-GGGTCAAAATGTAAATATGCAAAATTTTAAAGACTTGGTTGCA
910 TGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGCA
* * *
445991 AATTTTGTTCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATATTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
**
446056 GCAAATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
66 GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
* * ** * * *
446121 TTGCAATTTCATTGCATGTATTTGTGCCGTAATGTTGAATTGTTGAGTTGCAAATTATTTAAATA
131 GTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAGATA
* * * * *
446186 GCTTGGTCGAATTTGTTTGAAATTCACAAAAATGATATTGCGCTTATTTTTGCCTTGATTTCTTG
196 GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTG
* * * * *
446251 AATTGTAATTTATTTGAA-GAGATTTGAAATTTTAGGGATTAAATTGCAAAAATGAAAAGTTATG
261 ATTTATAAGTTATTT-AATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATG-AAAGTCATG
* * *
446315 CTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTCCATGATATGTGGATGGTT
324 CTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTT
* * * *
446380 CCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAACTG
389 CCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATG
* * * ** * **
446445 CAAATATGCAAAAATTTAAGGACTTCGTTGCAGAGTTTGTTTGATGAAATTTATTATTTAGTTGA
454 TAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGA
* *
446510 AACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGTGTGTTGAG
519 AACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAG
* * * * * * *
446575 ATGTTTGCAAGAGAAAATTCTTGTAAAATTAGTTAAAATTTCATTGCATGTATTTGTACCGTGAT
584 GTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGAT
* *
446640 ACTGAATTGTTGAGTTGCAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
649 GCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
* *
446705 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTT-TAAAGTTATTTAACGAGATTTGAAATTC
714 GATATTGTGCTTATTTTTACCTTGATTTCTTGATTTAT-AAGTTATTTAACGAGATTTGAAATTA
* * *
446769 TAGGGATTAAATTGTAAAAATA-AAAAGTCATGCTTTATGGCCAAAAGTATTTGATCGAGCCTTG
778 TAAGGATTAAATTGCAAAAA-AGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTG
*
446833 TAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAAGTGTTT
842 TAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTT
* * * *
446898 TTATGATGTTGTGAATGATT-TGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCA
907 TTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGCA
*
446962 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAGCATGATCAACCATTTTGGCATGTTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
* * * * *
447027 GCTGACTTGAAAATAATTTAGATACGTGATGAGGTGTTTGCACGAGAAAATTCTTGTAAAAGTAG
66 GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
* * ** * ** * **
447092 GTGAAATTTCATTACATGCATTCATATCATGGTACTGAATTGTTGAGTTGCGAATCGTTTAGATA
131 GTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAGATA
* * * * *
447157 GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTCCTTACTTTTGCCCTGGTTTCCTG
196 GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTG
* * * *
447222 ATTTATAAGTTATTTAATGGGATTTGAAATTATAGGGATTGAGTT-CAAAAATGAAAAGTCAGGC
261 ATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATG-AAAGTCATGC
* *
447286 TTTATGGCCAAAAGTATTTGGCCGAGCCTTGTAAAGGATTTTCTTTCCATAATTTTGTGGATGGT
325 TTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTT-TTTCCATGA-TTTGTGGATGGT
* *
447351 TCCAAGCTGATTTGGTGATTTGATTAAGTG-TTTTATGATGTTGTGATTCATTAGGGGTCAAAAC
388 TCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAA-
* * *
447415 AG-AAATATGCAAAAAGTTT-AGGACTTGGCTGCAATGTTTGTTCCATGAAATTTCTTATTTAGC
452 TGTAAATATGCAAAAA-TTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGC
* * *
447478 CGAAACAAGATCAACCATTTTGACATGTTTTTCTTGCTAATTTGAAATTAATTTAGATGCGTGAT
516 CGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGAT
* * *
447543 GAGGTGTTTGCATGAGAAAATTCTTGTAAAAATAGGTGAAATTTCATTGCATGTATTTATATCTT
581 GAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCAT
* * * * * *
447608 GGTGCCGAACTATTGAGTTGCAATTCATTTAGATAGCTTGGCCGAATCTGTTTGAAATTGATAAA
646 GATGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAA
* *** * * * * *
447673 GTTGATATTGCAATTACTTTTACATTAATTTCTTGATTTATAAGTTATTAAACGAGAATTGAAAT
711 GATGATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAAT
* * * *
447738 TATAAGGATTAAATTGCAAAAAAGGAAAGCCGTGCTTTATGTG-CAAAAGTATTTGACCAAGCCT
776 TATAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACCGAGCCT
** * *
447802 TGTAAAGGATTTTTTTTCCACAATTTGTGGATGGTTCCAAGCTAATTTGGTGATTTGATTATTTG
840 TGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTG
* * * *
447867 TCTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAAATTTAAAGACCTAGTT
904 TTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTT
447932 GCA
969 GCA
* * * *
447935 AAGTTTGTTCCATGAAAGTTCTTATTTACCCGAAACATGATCAACCATTTTTGCATGTCTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
* *
448000 GCTGATTT-AAGATTACTTTAGATG-AGTGATGAGGTGTTTGCATGAGAAAATTATTGTAAAAGT
66 GCTGATTTGAA-ATTAATTTAGATGCA-TGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT
* * *
448063 AGGTGAAATTTCATTGCATGTATTTATATCTTCATGTTGAATTGTTGAGTTGC-AATTCATTTAG
129 AGGTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATT-ATTTAG
* *
448127 ATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTACTTATTTTTACCTTGATTTC
193 ATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTC
* * * *
448192 TTGACTTT-TAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATGGCAAATAAAGAAAGCC
258 TTGA-TTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAA-AATGAAAGTC
* * * *
448256 ACGCTTTATGTG-AAAAAGTATTTGACCAAGCCTTGTAAAGGATTTTTTTTTCCACGATTTGTGG
321 ATGCTTTATG-GCCAAAAGTATTTGACCGAGCCTTGTAAAGGA--TTTTTTTCCATGATTTGTGG
** * * *
448320 ATGGTTTGAAGCTAATTTGGGGATTTGATTATGTATTTTTATGATGTTGTGATTGATTAGGGGTC
383 ATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTC
* * * *
448385 AAAATATAAATGTGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAAGTTCTTATTT
448 AAAATGTAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTT
* * *
448450 A-CTCGAAACATGATCAGCCATTTTGGCATGTTTTTCTTGCTAATTTGAAATTAATTTAGATGAG
513 AGC-CGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCG
* * * * *
448514 TGTTGAGGTGTTTGCATGAGAAAATTCTTGCAAAAGTCGGTGAAATTTCATTACATGTATTTATA
577 TGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTA
* * * * * **
448579 TCTTGATGTTGAATTGTTGTGTTGCAATTCATTTAGATAGCTTTGTCGAATCAATTTGAAATTGA
642 TCATGATGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGA
* * * *
448644 T-AAGATGATATTGTAG-TTATTTTTACCTTGGTTTCCTGATTTTTAAGTTATTTAATGAGATTT
707 TAAAGATGATATTGT-GCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTT
* * * *
448707 GAAATTATAAGGATTAAATTACAAAAAAGGAAAGCCATGCTTTATGTG-CAAAAGTATTTGACCA
771 GAAATTATAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACCG
* *
448771 AGCCTTGTAAAGTATTTTTTTCCAAT-ATTTGTGGATGGTTCCAAGTTGATTTGGTGATTTGATT
835 AGCCTTGTAAAGGATTTTTTTCC-ATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATT
* *
448835 ATGTGTTTATATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAAATTTAAAGACT
899 ATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACT
448900 TGGTTGCA
964 TGGTTGCA
* * * *
448908 AAGTTTATTCCATGAAAGTTCTTATTTACCCGAAACATGATCAGCCATTTTGGCATGTTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
* *
448973 GCTAATTTGAAATTAATTTAGATG-AGTGTTGAGGTGTTTGCATGAGAAAATTCTTG-AACAAGT
66 GCTGATTTGAAATTAATTTAGATGCA-TGATGAGGTGTTTGCATGAGAAAATTCTTGTAA-AAGT
* * * * * **
449036 CGGTGAAATTTCATTACATGTATTTATATCTTGATGCTGAATTGTTGTCTTGC-AATTCATTTAG
129 AGGTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATT-ATTTAG
* ** * *
449100 ATAGCTTAGTCGAATCAATTTGAAATTGATAAAGATGATATTGTAG-TTATTTTTACCTTGGTTT
193 ATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGT-GCTTATTTTTGCCTTGATTT
* * * * * *
449164 CCTGATTTTTAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTACAAAAAAGGAAAGCC
257 CTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC-AAAAATGAAAGTC
* * *
449229 ATGCTTTATGTG-CAAAAGTATTTGACCAAGCCTTGTAAA-GTTATTTTTTCCAAT-ATTTGTGC
321 ATGCTTTATG-GCCAAAAGTATTTGACCGAGCCTTGTAAAGGAT-TTTTTTCC-ATGATTTGTGG
* *
449291 ATGGTTCCAAGCAGATTTGGTGATTTGATTATGTGTTTATATGATGTTGTGATTGATTAGGGGTC
383 ATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTC
* * *
449356 AAAATGTAAATGTGCAAAAATTTAAAGACTTGGTTGCAAAGTTTGTTCCATGAAAGTTCTTATTT
448 AAAATGTAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTT
* * *
449421 ACCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATCTAGATGAGT
513 AGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGT
* * * *
449486 GATGAGGTGTTTGCATGAAAAAATTCTTGTAGAAGTAGGTGAAATTTCATTGCTTGTATTTATAT
578 GATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTAT
* * * * * *
449551 CTTGATGTTGAACTGTTGAGTTGCAATTCATTTAGATAGCTTGGTCGAATCTGTTTGTAATTAAT
643 CATGATGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGAT
* * * * * * *
449616 AAAGTTGATGTTGTACTTATTTTTACCTTGATTTTTTTATTTTTAAGTTATTTAATGAGATTTGA
708 AAAGATGATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGA
* * * * * * *
449681 AAATATAGGGATTAAATTCCAAAAATGGAAAGTCATGCTTTATAGCCAAAAGTATTCGACCGAGC
773 AATTATAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGC
* *
449746 CTT-TCAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGTTTATTTGGTGATTTGATTATG
838 CTTGT-AAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATG
* * *
449810 TGTTTTTATGATGTTGTGATTGATTAGGGGTTAAAATGCAAATATGCAAAAATTTAAGGACTTGG
902 TGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGG
449875 TTGCA
967 TTGCA
* * * * *
449880 AAGTTTGTTCTATGAAATTTCTTATTTACCCAAAACATGGTTAACCATTTTGGCATGTTTTTCTT
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
* * * * *
449945 GCTGATTTGAAAATAATTTAGATGCGTGATGAGGTGTTTCCAAGAGAAAATTGTTGTAAAAGTAG
66 GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
* * * * * * *
450010 TTGAAATTTTATTCCATGTATTTGCACCATGATGCTGAATTGTTGAGTTACAAATTATTTAGATA
131 GTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAGATA
* * * * * * *
450075 GCTTAGTCGAATTTGTTTGAAATTGATAATGATGATATTGTGCGTATTTTTGCGTTGAATTCTTT
196 GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTG
* *
450140 ATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGTTTAAATTACAAAAAATGAAAAGTCATG
261 ATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGC-AAAAATG-AAAGTCATG
*
450205 CTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTTCCATGATTTGTGGATGGT
324 CTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGT
*
450270 TCCAAGC-------------------T-TGTTTTTATGATGTTGTGATTAATTAGGGGTCAAAAT
388 TCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAAT
* * * * *
450315 GCAAATATGCAAAAATTTAAGGACTTGGCTGCAAAGTTTGTTCCAAGAAATTTTTTATTTACCCG
453 GTAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCG
* * *
450380 ATACATGATCAGCCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGAGTGATGA
518 AAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGA
* * * *
450445 GGTGTTTCCATGAGAAAATTCTTGTAAAAGTCGGTGAAATTTCATTGCATGTATTTATATCTTGA
583 GGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGA
* * * **
450510 TGCTGAACTGTTGAGTTGCAATTCATTTAAATAGCTTGGTCGAATCAATTTGAAATTGATAAAGA
648 TGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGA
* * * *
450575 -GATGTTGTACTTATTTTTACCTTGATTTCTTGATTTTTAAGTTATTTAATGAGATTTGAAATTA
713 TGATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTA
* * * * *
450639 TAAGGATTAAATTACAAAGAAGGAAAGCCATGCTTTATGTG-CAAAAGTATTTGACCAAGCCTTG
778 TAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATG-GCCAAAAGTATTTGACCGAGCCTTG
*
450703 AAAAGGATTTTTTTCCACT-ATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTT
842 TAAAGGATTTTTTTCCA-TGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTT
* *
450767 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAATTTTAAAGACTTGGTTGC
906 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGC
450832 A
971 A
* * ** *** * *** ** **
450833 AAGTTTGTCCCATGAAAGTTCTTATTTA-ATG-ATGTTG-TGATTGATTAGGGGTCAAAATGTAA
1 AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATT-TTGG-C---ATGTTT
* * ** * * * * * * *
450895 AT-GTGCAAAATTTTAAA--GACTTGGTTGCA--A--A-GT-TTGTCCCAT--GAAAGTTCTTAT
61 TTCTTGC-TGATTTGAAATTAATTTAGATGCATGATGAGGTGTT-T-GCATGAGAAAATTC-T-T
* ** * * * * * * *
450949 TTACCCAAAACATGATCAACCATTT--TGGCATGTTTTTCT-TGC-TGAT-TTGAAATTAATTTA
121 GTA---AAAGTA-GGTGAA--ATTTCATTGCATGTATTTGTAT-CATGATGTTG-AATT-GTTGA
* * * * * * * * * *
451009 GATG--AGTGA-TGAGGT-GTTTGCAT-GAAATTTTTTTTGTAAAAGTAGGA-AATTTCATTGCA
177 GTTGCAAATTATTTAGATAGCTTG-GTCG-AA-TCTGTTTG--AAA-T-TGATAA----A--G-A
* * * * * * *
451068 TG-TAATTATATCTTGA-TGTTGAACTGTTGAGTTGCAATTCATTTACATAGCTCGGTCGAGTCT
228 TGAT-ATTGT-GCTT-ATTTTTG--C-CTTGA-TTTC--TTGATTTATA-AG-T---T--A-T-T
* * * * ** * **** *** *
451131 GT-TTGA-AATTGATAAAGTTGATATTGTACTTATTTTTACCTCGATTTTTTGATTTTTATG-TT
275 -TAATGAGATTTG--AAA-TT-ATA-GGGA-TTA-AATT---GC-A-AAAATGAAAGTCATGCTT
** * * **** * * **
451193 ATATGAAGAGATTTGAAAATATAGGGATTAAATTCC-AAAAATGGAAAGTCATGCTTTATGGCCA
327 -TATG--GCCA----AAAGTAT-----TT-GA--CCGAGCCTTGTAAAG-GAT--TTT-TTTCC-
* ** * * *
451257 AAAGTATTTGACCGA-GCCTTGCAAAGGATTTTTTTCCATGATTTGTAGATGGTTCCAAGCTGAT
372 -ATG-ATTTG-TGGATG-GTT-CCAA-G---------C-TGATTTG--G-TGATT------TGAT
* * * ** * *** * * *
451321 T-TGGTGATTTGATTATG-TGTTTTTA-TGATGTTGTGATTGATTAGGGGTTAAAATGCAAATAT
412 TAT-GTG-TTT--TTATGATGTTGTGATTGAT-TAG-GGGTCA--AAATGTAAATATGCAAAAAT
* ** * *
451383 GCAAAAATTTAAGGACTAT-GTTGCAAAGTTTGTTTTATGAAATTTCTTATTTACCCAAAACATG
469 -------TTA-AGGACT-TGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATG
* * * * * *
451447 GTTAACCATTTTGGCTTGTTTTTCTTGCTGAGTTGAAAATAATTTAGATGCATGATGAGGTGTTT
525 ATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTT
* * * * * * * * *
451512 CCAAGAGAAAATTCTTGTAAAAGTAGTTGAAATTTTATTCCATGTCTTTGCACCGTGATGCTGAA
590 GCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAA
* * * *
451577 TTGTTGAGTTACAAATTATTTAGATAGCTTGGTCGAATCTATTTGAAGTTGATAAAGATGATATT
655 TTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATT
* * * * *
451642 GTGCATATTTTTGCGTTGAATTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTATAGGGAT
720 GTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTATAAGGAT
* * *
451707 TAAATTCCAAAAATGAAAAGTCAAGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGAT
785 TAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGA-
* *
451772 TTTTTTTCCATGATTGGTGG-TCGGTTCCAAGCTGATTTGGTGATTTGATTACGTGTTTTTATGA
849 TTTTTTTCCATGATTTGTGGAT-GGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGA
* * *
451836 TGTTGTGATTAATTAGGGGTAAAAATGCAAATATGCAAAAATTTAAAGACTTGGTTGCA
913 TGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGCA
* *
451895 AAGTTTGTTCCATGAAATCTT-TTATTTAG-CTAAAGCATGATCAAGCATTTTGGCATGTTTTTC
1 AAGTTTGTTCCATGAAAT-TTCTTATTTAGCCGAAA-CATGATCAACCATTTTGGCATGTTTTTC
* * * * * *
451958 TTGCTAATTTGAAATTAATTTAGATGCGTGAAGAAGTGTGTGCATGTGAAAATTCTTGTAAAA-T
64 TTGCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT
* * * * ** **
452022 CAAGTGAAATTTCATTACCTGTATTTGTATCATGGTCCTGAATTGTTGAGTTGCAAATCGTTTAG
129 -AGGTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAG
*
452087 ATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTTATTTC
193 ATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTC
* * * * *
452152 TTCACTTATAAGTTATTTAATGAGATTTGAAAATATAGGGATTAAATTGTAAAAATGAAAGTCGT
258 TTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAGTCAT
* * * * * *
452217 GCCTTATGGCCCAAAGTATTTGGCCTAGCCTTGTAAAGGAATTTTTTTTCATGATTTGTAGATGG
323 GCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGG-ATTTTTTTCCATGATTTGTGGATGG
* * *
452282 TT-AAAGTTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATT-----T---GA
387 TTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAA
* * * *
452338 CGTAAATATGCAAAAAATTAAGGACTTGGTTGCAATGTTTGTTCCATGAAATTTCTTATTTAGCT
452 TGTAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCC
** * *
452403 GAAACATGATCAACCATTTTCACATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATA
517 GAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATG
* * * * * * *
452468 ATGTGTTTGCAAGGGAAAATTCTTGTAAAAGTAGGTGAAATTTCTTTGAATATATTTGTATCATA
582 AGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATG
* * * * *
452533 ATGCTGAATTGTTAAGTTACAAATCAATTA-AGTAGCTTGGTCAAATCTGTTTCAAATTGATAAA
647 ATGCTGAATTGTTGAGTTGCAAATCATTTAGA-TAGCTTGGTCGAATCTGTTTGAAATTGATAAA
* * *
452597 GATAATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACAAGAGTTGAAAT
711 GATGATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAAT
* *
452662 TGTAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTT
776 TATAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTT
452727 GTAAAGGATTTTTTTCCACT-ATTTGTGGATGGTTCCAAGCTGATTTGG-GTATTTGATTATGTG
841 GTAAAGGATTTTTTTCCA-TGATTTGTGGATGGTTCCAAGCTGATTTGGTG-ATTTGATTATGTG
*
452790 TTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATTTGCAAAAATTTAAAGACTTGGTT
904 TTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTT
452855 GCA
969 GCA
* *
452858 AAGTTTGTTCCATGAAAGTTCTTATTT-GCCCGAAACATGACCAACCATTTTGGCATGTTTTTCT
1 AAGTTTGTTCCATGAAATTTCTTATTTAG-CCGAAACATGATCAACCATTTTGGCATGTTTTTCT
* * *
452922 TGCTGATTTGAAATTAATTTAGATG-AGTGATGAGGTGTTTACATAAGAAAATTCTTGTGAAAGT
65 TGCTGATTTGAAATTAATTTAGATGCA-TGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT
* * * *
452986 AGGTGAAATTTCATTGCATATATTTATATCTTGATGTTGAACTGTTGAGTTGC-AATTCATTTAG
129 AGGTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATT-ATTTAG
* * * * * *
453050 ATAACTTGGTCGAATCTGTTTGAAATTGATAATGTTGATATTGTACTTATTTTTACCTTGATTTT
193 ATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTC
* *
453115 TTGATTTTTAAGTTATTTAATGAGATTTGTAAA-TATAGGGATTAAATTCCAAAAATGGAAAGTC
258 TTGATTTATAAGTTATTTAATGAGATTTG-AAATTATAGGGATTAAATTGCAAAAAT-GAAAGTC
*
453179 ATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGCAAAGGATTTTTTTCCATGATTTGTGGATG
321 ATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATG
* *
453244 GTTCCAAGCTGATTTGGTGATTTGATTTTGTGTTTTTATGATGTTGTGATTGATTAGGGGTTAAA
386 GTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAA
* * * *
453309 ATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTATGAAATTTTGTTATTTAC
451 ATGTAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAA-TTTCTTATTTAG
* * * * * * *
453374 CCAAAACATGGTTAACCATTTTGGCATGTTTTTCTTGCTGACTTGAAAATACTTTAGATGCGTCA
515 CCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGA
* * * * * * *
453439 TGAGGTGTTTCCATGAGAAAATTCTTGTAAAAGTAGTTGAAATTTTATTCCATGGATTTGCACCA
580 TGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCA
* * * *
453504 TGATGCTGAATTGTTAAGTTACAAATTATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAC
645 TGATGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAA
* *** *
453569 AGATGATGTTGTGCTT-TTTTTGTGTTGAATTCTTGATTTATAA
710 AGATGATATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAA
453612 TTGATATAAC
Statistics
Matches: 9869, Mismatches: 1349, Indels: 578
0.84 0.11 0.05
Matches are distributed among these distances:
947 8 0.00
948 4 0.00
949 11 0.00
950 12 0.00
951 18 0.00
952 13 0.00
953 288 0.03
954 281 0.03
955 19 0.00
960 2 0.00
961 7 0.00
962 13 0.00
963 394 0.04
964 426 0.04
965 7 0.00
966 2 0.00
968 8 0.00
969 3 0.00
970 152 0.02
971 3341 0.34
972 1766 0.18
973 1281 0.13
974 676 0.07
975 271 0.03
976 9 0.00
977 5 0.00
978 4 0.00
979 2 0.00
980 3 0.00
981 1 0.00
982 8 0.00
983 9 0.00
984 7 0.00
985 10 0.00
986 12 0.00
987 2 0.00
988 2 0.00
991 4 0.00
992 7 0.00
994 7 0.00
997 2 0.00
998 1 0.00
999 8 0.00
1000 2 0.00
1001 3 0.00
1002 3 0.00
1004 3 0.00
1005 9 0.00
1006 4 0.00
1007 7 0.00
1008 7 0.00
1009 2 0.00
1011 2 0.00
1012 3 0.00
1013 2 0.00
1014 9 0.00
1016 2 0.00
1017 1 0.00
1021 6 0.00
1025 1 0.00
1027 10 0.00
1028 2 0.00
1032 2 0.00
1033 3 0.00
1034 2 0.00
1035 3 0.00
1036 1 0.00
1037 4 0.00
1038 4 0.00
1039 5 0.00
1040 1 0.00
1042 1 0.00
1045 2 0.00
1046 2 0.00
1047 10 0.00
1048 6 0.00
1049 11 0.00
1050 11 0.00
1051 1 0.00
1052 14 0.00
1053 7 0.00
1054 7 0.00
1055 2 0.00
1057 1 0.00
1059 2 0.00
1060 227 0.02
1061 125 0.01
1062 164 0.02
1063 16 0.00
1064 15 0.00
1065 12 0.00
1066 12 0.00
1067 4 0.00
1068 8 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (971 bp):
AAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTT
GCTGATTTGAAATTAATTTAGATGCATGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTAG
GTGAAATTTCATTGCATGTATTTGTATCATGATGTTGAATTGTTGAGTTGCAAATTATTTAGATA
GCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTG
ATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAGTCATGCT
TTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCC
AAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTA
AATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
CATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGT
GTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGC
TGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGA
TATTGTGCTTATTTTTACCTTGATTTCTTGATTTATAAGTTATTTAACGAGATTTGAAATTATAA
GGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAA
GGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTAT
GATGTTGTGATTGATTAGGGGTCAAAATGTAAATATGCAAAAATTTAAAGACTTGGTTGCA
Found at i:450925 original size:91 final size:91
Alignment explanation
Indices: 450770--450951 Score: 364
Period size: 91 Copynumber: 2.0 Consensus size: 91
450760 ATGTGTTTTT
450770 ATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAATTTTAAAGACTTGGTTGCAAA
1 ATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAATTTTAAAGACTTGGTTGCAAA
450835 GTTTGTCCCATGAAAGTTCTTATTTA
66 GTTTGTCCCATGAAAGTTCTTATTTA
450861 ATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAATTTTAAAGACTTGGTTGCAAA
1 ATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAATTTTAAAGACTTGGTTGCAAA
450926 GTTTGTCCCATGAAAGTTCTTATTTA
66 GTTTGTCCCATGAAAGTTCTTATTTA
450952 CCCAAAACAT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (91 bp):
ATGATGTTGTGATTGATTAGGGGTCAAAATGTAAATGTGCAAAATTTTAAAGACTTGGTTGCAAA
GTTTGTCCCATGAAAGTTCTTATTTA
Found at i:455650 original size:22 final size:21
Alignment explanation
Indices: 455615--455664 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
455605 TTTGTTGATG
*
455615 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
455635 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
455656 AATTTGAAG
1 ATTTTGAAG
455665 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:455661 original size:21 final size:22
Alignment explanation
Indices: 455622--455664 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
455612 ATGATTTTGA
* *
455622 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
455644 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
455665 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:462893 original size:30 final size:29
Alignment explanation
Indices: 462807--462894 Score: 72
Period size: 30 Copynumber: 3.0 Consensus size: 29
462797 TTGGTTGTGC
*
462807 CCCAAGTTATTGTTTAGGTTTCTTGTTTT
1 CCCAAGTTATTGTTTAGGGTTCTTGTTTT
** ** * *
462836 ATCAAGCCATTTCTTTA-AG-TCTTTGTTTT
1 CCCAAGTTA-TTGTTTAGGGTTC-TTGTTTT
462865 GCCCAAGTTATTGTTTAGGGTTCTTGTTTT
1 -CCCAAGTTATTGTTTAGGGTTCTTGTTTT
462895 ATCCAGGTCA
Statistics
Matches: 41, Mismatches: 13, Indels: 9
0.65 0.21 0.14
Matches are distributed among these distances:
28 2 0.05
29 18 0.44
30 19 0.46
31 2 0.05
ACGTcount: A:0.16, C:0.15, G:0.17, T:0.52
Consensus pattern (29 bp):
CCCAAGTTATTGTTTAGGGTTCTTGTTTT
Found at i:462941 original size:60 final size:60
Alignment explanation
Indices: 462757--463004 Score: 236
Period size: 60 Copynumber: 4.1 Consensus size: 60
462747 TATAGTCTTG
* ** * * *
462757 GTTTAGGTTTCTAGTTTTATCCAAGTAATTTTTTTG-AGTTTTGGTTGTGCCCCAAGTTATT
1 GTTTAGGTTTCTTGTTTTATCCAAGCCA-TTTCTTGAAGTCTTGGTTTTG-CCCAAGTTATT
* *
462818 GTTTAGGTTTCTTGTTTTAT-CAAGCCATTTCTTTAAGTCTTTGTTTTGCCCAAGTTATT
1 GTTTAGGTTTCTTGTTTTATCCAAGCCATTTCTTGAAGTCTTGGTTTTGCCCAAGTTATT
* * * * *
462877 GTTTAGGGTTCTTGTTTTATCCAGGTCATTTCATTGAA-TCTTGGTTTCGCCTAAGTTATT
1 GTTTAGGTTTCTTGTTTTATCCAAGCCATTTC-TTGAAGTCTTGGTTTTGCCCAAGTTATT
* * * * * *
462937 GTTTAGGTTTCTGGTTTCAT-CAAGGCCATTT-TGTTAAGCCTTGGTTTTGCCTAAGTCATT
1 GTTTAGGTTTCTTGTTTTATCCAA-GCCATTTCT-TGAAGTCTTGGTTTTGCCCAAGTTATT
*
462997 ATTTAGGT
1 GTTTAGGT
463005 GTTTAGGTCA
Statistics
Matches: 156, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
58 1 0.01
59 40 0.26
60 92 0.59
61 23 0.15
ACGTcount: A:0.17, C:0.14, G:0.19, T:0.49
Consensus pattern (60 bp):
GTTTAGGTTTCTTGTTTTATCCAAGCCATTTCTTGAAGTCTTGGTTTTGCCCAAGTTATT
Found at i:462965 original size:120 final size:120
Alignment explanation
Indices: 462757--463003 Score: 302
Period size: 120 Copynumber: 2.1 Consensus size: 120
462747 TATAGTCTTG
* ** * *
462757 GTTTAGGTTTCTAGTTTTATCCAAGTAATTTTTTTGAGTTTTGGTTGTGCCCCAAGTTATTGTTT
1 GTTTAGGGTTCTAGTTTTATCCAAGTAATTTCATTGAATCTTGGTTGTGCCCCAAGTTATTGTTT
* * * * *
462822 AGGTTTCTTGTTTTATCAAGCCATTTCT-TTAAGTCTTTGTTTTGCCCAAGTTATT
66 AGGTTTCTGGTTTCATCAAGCCATTT-TGTTAAGCCTTGGTTTTGCCCAAGTCATT
* * * *
462877 GTTTAGGGTTCTTGTTTTATCCAGGTCATTTCATTGAATCTTGGTT-T-CGCCTAAGTTATTGTT
1 GTTTAGGGTTCTAGTTTTATCCAAGTAATTTCATTGAATCTTGGTTGTGC-CCCAAGTTATTGTT
*
462940 TAGGTTTCTGGTTTCATCAAGGCCATTTTGTTAAGCCTTGGTTTTGCCTAAGTCATT
65 TAGGTTTCTGGTTTCATCAA-GCCATTTTGTTAAGCCTTGGTTTTGCCCAAGTCATT
*
462997 ATTTAGG
1 GTTTAGG
463004 TGTTTAGGTC
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
118 1 0.01
119 33 0.31
120 74 0.69
ACGTcount: A:0.17, C:0.14, G:0.19, T:0.49
Consensus pattern (120 bp):
GTTTAGGGTTCTAGTTTTATCCAAGTAATTTCATTGAATCTTGGTTGTGCCCCAAGTTATTGTTT
AGGTTTCTGGTTTCATCAAGCCATTTTGTTAAGCCTTGGTTTTGCCCAAGTCATT
Found at i:463112 original size:109 final size:110
Alignment explanation
Indices: 462899--463113 Score: 247
Period size: 109 Copynumber: 2.0 Consensus size: 110
462889 TGTTTTATCC
* * *
462899 AGGTCATTTCATTGAATCTTGGTTTCGCCTAAGTTATTGTTTAGGTTTCTGGTTTCATCAAGGCC
1 AGGTCATTTCATTGAATCTTGATTTCGCCTAAGTCATTGTTTAGGTTTCTAGTTTCATCAAGGCC
* ***
462964 ATTTTGTTAAGCCTTGGTTTTGCCTAAGTCATTATTTAGGTGTTT
66 ATTTTGTTAAGCCTTAGTTACACCTAAGTCATTATTTAGGTGTTT
* * * *
463009 AGGTCATTTTATTGAGT-TTGATTTTGCCCTAAGTCATTG-TTAGGTTTCTAGTTTTATCCAA-G
1 AGGTCATTTCATTGAATCTTGATTTCG-CCTAAGTCATTGTTTAGGTTTCTAGTTTCAT-CAAGG
* * * * *
463071 CCATTTTGTTGAGTCTTAGTTACACCTATGTTATTGTTTAGGT
64 CCATTTTGTTAAGCCTTAGTTACACCTAAGTCATTATTTAGGT
463114 TTCTAGTTTT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
109 58 0.67
110 29 0.33
ACGTcount: A:0.19, C:0.14, G:0.20, T:0.47
Consensus pattern (110 bp):
AGGTCATTTCATTGAATCTTGATTTCGCCTAAGTCATTGTTTAGGTTTCTAGTTTCATCAAGGCC
ATTTTGTTAAGCCTTAGTTACACCTAAGTCATTATTTAGGTGTTT
Found at i:463420 original size:76 final size:76
Alignment explanation
Indices: 463231--463590 Score: 244
Period size: 76 Copynumber: 4.7 Consensus size: 76
463221 ATCGTCATGC
* * * * * * * *
463231 ATTATCAGTTTGTTTTGGCTGATAATGAGAAAATGTAGAAACAACATGTTCCGC-ATCATGTTGC
1 ATTATCAGTTTGTTTTAGTTGTTAAT-AGAAATTTTAGAAACCACATATTCC-CTATCATGTTCC
463295 -TTCTTCTTCAAGCC-
64 TTTC-T-TTC-AGCCT
* * * * * * * * *
463309 ATTATTAGTTTATTTGA-CTATTGATAAAAATTTTTAAAAACCATATATTCCCTATCATGTTCCT
1 ATTATCAGTTTGTTTTAGTTGTTAATAGAAA-TTTTAGAAACCACATATTCCCTATCATGTTCCT
* *
463373 TTCCTTCATCCT
65 TTCTTTCAGCCT
** * *
463385 ATTATCAGTTTGTTTTAGTTGTTAATAGAAATTTTAGAAATAAAATATTCCCGATCATGTTCCTT
1 ATTATCAGTTTGTTTTAGTTGTTAATAGAAATTTTAGAAACCACATATTCCCTATCATGTTCC-T
* *
463450 CTTTTTTAAGCC-
65 -TTCTTTCAGCCT
* * * * * * * *
463462 ATTATCAGTTTCTTTCAGCTATTTTGATGGAAATTTGAGAAACCACATATTCCCTATCTTGTTCT
1 ATTATCAGTTTGTTTTAG-T-TGTTAATAGAAATTTTAGAAACCACATATTCCCTATCATGTTCC
463527 TTTCTTTCAGCCT
64 TTTCTTTCAGCCT
* * * * * *
463540 GTTATCATTTTGTTTTGGCTGTTAATAAAAATTTTATAAACCACATATTCC
1 ATTATCAGTTTGTTTTAGTTGTTAATAGAAATTTTAGAAACCACATATTCC
463591 TCGTTATGTT
Statistics
Matches: 213, Mismatches: 59, Indels: 22
0.72 0.20 0.07
Matches are distributed among these distances:
75 3 0.01
76 75 0.35
77 63 0.30
78 38 0.18
79 34 0.16
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.43
Consensus pattern (76 bp):
ATTATCAGTTTGTTTTAGTTGTTAATAGAAATTTTAGAAACCACATATTCCCTATCATGTTCCTT
TCTTTCAGCCT
Found at i:463563 original size:155 final size:153
Alignment explanation
Indices: 463231--463590 Score: 400
Period size: 155 Copynumber: 2.3 Consensus size: 153
463221 ATCGTCATGC
* * * * * *
463231 ATTATCAGTTTGTTTTGGCTGATAATGAGAAAATGTAGAAACAACATGTTCCGCATCATGTTGCT
1 ATTATCAGTTTGTTTTGGCTGTTAAT-AGAAATTTTAGAAACAAAATATTCCGCATCATGTTCCT
* * * *
463296 TCTTCTTCAAGCCATTATTAGTTTATTTGACTATTGATAAAAATTTTTAAAAACCATATATTCCC
65 TCTTCTTCAAGCCATTATCAGTTTATTTCACTATTGATAAAAATTTTGAAAAACCACATATTCCC
*
463361 TATCATGTTCCTTTCCTTCATCCT
130 TATCATGTTCCTTTCCTTCAGCCT
* * *
463385 ATTATCAGTTTGTTTTAGTTGTTAATAGAAATTTTAGAAATAAAATATTCC-CGATCATGTTCCT
1 ATTATCAGTTTGTTTTGGCTGTTAATAGAAATTTTAGAAACAAAATATTCCGC-ATCATGTTCCT
* * * ** *
463449 TCTTTTTTAAGCCATTATCAGTTTCTTTCAGCTATTTTGATGGAAA-TTTGAGAAACCACATATT
65 TCTTCTTCAAGCCATTATCAGTTTATTTCA-CTA--TTGATAAAAATTTTGAAAAACCACATATT
* * *
463513 CCCTATCTTGTTCTTTTCTTTCAGCCT
127 CCCTATCATGTTCCTTTCCTTCAGCCT
* * * * * *
463540 GTTATCATTTTGTTTTGGCTGTTAATAAAAATTTTATAAACCACATATTCC
1 ATTATCAGTTTGTTTTGGCTGTTAATAGAAATTTTAGAAACAAAATATTCC
463591 TCGTTATGTT
Statistics
Matches: 170, Mismatches: 32, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
152 1 0.01
153 55 0.32
154 26 0.15
155 80 0.47
156 8 0.05
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.43
Consensus pattern (153 bp):
ATTATCAGTTTGTTTTGGCTGTTAATAGAAATTTTAGAAACAAAATATTCCGCATCATGTTCCTT
CTTCTTCAAGCCATTATCAGTTTATTTCACTATTGATAAAAATTTTGAAAAACCACATATTCCCT
ATCATGTTCCTTTCCTTCAGCCT
Found at i:464198 original size:41 final size:41
Alignment explanation
Indices: 464153--464261 Score: 112
Period size: 41 Copynumber: 2.7 Consensus size: 41
464143 AACCTATTGG
** * * *
464153 CTTTAATTGTTTTGCCTTGGCTAACCTCTCTAACTGGTTGA
1 CTTTAATTGTTTCACCTTGGCCAACCCCTCTAACTGGTTAA
* *
464194 CTTTATTTGTTTCACCTTGGCCAACCCCTCTAATTGGTTAA
1 CTTTAATTGTTTCACCTTGGCCAACCCCTCTAACTGGTTAA
* * *
464235 CTTT-ATCGATTTCACCCTGGTCAACCC
1 CTTTAATTG-TTTCACCTTGGCCAACCC
464262 TTTTAACTCA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 2 0.04
41 54 0.96
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (41 bp):
CTTTAATTGTTTCACCTTGGCCAACCCCTCTAACTGGTTAA
Found at i:464835 original size:81 final size:81
Alignment explanation
Indices: 464724--465021 Score: 296
Period size: 81 Copynumber: 3.7 Consensus size: 81
464714 TCATTGTCAT
* * * * * * *
464724 CCTAGTCAACCCCTTTAACTTGTTGGCTTTATCGATTCGCCATGGCCAACCCCTTAAATTGGTTA
1 CCTAGTCAACCCCTCTAACCTATTGGCTTTATCGATTCACCCTGGCCAACCCCTTTAATTGGTTG
464789 ACTTTATCGGTTTCAC
66 ACTTTATCGGTTTCAC
* * * *
464805 CCT-GATTAACCCCTCTAACCTATTGGCTTTATCGATTTCATCTTGGCCAACCCCTTTAATTAGT
1 CCTAG-TCAACCCCTCTAACCTATTGGCTTTATCGA-TTCACCCTGGCCAACCCCTTTAATTGGT
* **
464869 TGACTTTATCGATTT-TG
64 TGACTTTATCGGTTTCAC
* * *
464886 CCTAGTCAACCCCTCTAATCTATTGGCTTTATCAGTTTCACCCTTGCCAA-CCCTTCTAATTGGT
1 CCTAGTCAACCCCTCTAACCTATTGGCTTTATC-GATTCACCCTGGCCAACCCCTT-TAATTGGT
* *
464950 TGACTTTATCAGTTTCAT
64 TGACTTTATCGGTTTCAC
** * * * * *
464968 CCTAGTCAATGCCTCTAATCTTTTGGCTTTATTGATATCGCCCTAGCCAACCCC
1 CCTAGTCAACCCCTCTAACCTATTGGCTTTATCGAT-TCACCCTGGCCAACCCC
465022 CCTTGTAGAC
Statistics
Matches: 178, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
80 6 0.03
81 91 0.51
82 78 0.44
83 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.38
Consensus pattern (81 bp):
CCTAGTCAACCCCTCTAACCTATTGGCTTTATCGATTCACCCTGGCCAACCCCTTTAATTGGTTG
ACTTTATCGGTTTCAC
Found at i:464944 original size:41 final size:40
Alignment explanation
Indices: 464790--464999 Score: 142
Period size: 41 Copynumber: 5.2 Consensus size: 40
464780 AATTGGTTAA
* *
464790 CTTTATCGGTTTCACCC-TGATTAACCCCTCTAACCTATTGG
1 CTTTATC-GTTTCACCCTTG-TCAACCCCTCTAATCTATTGG
* * * *
464831 CTTTATCGATTTCA-TCTTGGCCAACCCCTTTAAT-TAGTTGA
1 CTTTATCG-TTTCACCCTT-GTCAACCCCTCTAATCTA-TTGG
** *
464872 CTTTATCGATTT-TGCCTAGTCAACCCCTCTAATCTATTGG
1 CTTTATCG-TTTCACCCTTGTCAACCCCTCTAATCTATTGG
* * * *
464912 CTTTATCAGTTTCACCCTTGCCAACCCTTCTAAT-TGGTTGA
1 CTTTATC-GTTTCACCCTTGTCAACCCCTCTAATCT-ATTGG
* * ** *
464953 CTTTATCAGTTTCATCCTAGTCAATGCCTCTAATCTTTTGG
1 CTTTATC-GTTTCACCCTTGTCAACCCCTCTAATCTATTGG
464994 CTTTAT
1 CTTTAT
465000 TGATATCGCC
Statistics
Matches: 132, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
40 31 0.23
41 99 0.75
42 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (40 bp):
CTTTATCGTTTCACCCTTGTCAACCCCTCTAATCTATTGG
Found at i:465357 original size:21 final size:21
Alignment explanation
Indices: 465327--465381 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
465317 TTCTACAATT
* *
465327 TGTATTGATACATATAGTAAC
1 TGTATCGATACATATAGTAAA
*
465348 TGTATCGATACACATAGTAAA
1 TGTATCGATACATATAGTAAA
465369 TGTATCGATACAT
1 TGTATCGATACAT
465382 GCCTAACTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATATAGTAAA
Found at i:465550 original size:51 final size:51
Alignment explanation
Indices: 465469--465605 Score: 193
Period size: 51 Copynumber: 2.7 Consensus size: 51
465459 ATTTGCTGTT
* *
465469 TGTATCTATACATTCTTCATTGTATCGATACATTCTGGGTTTTAACCCAGA
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCCAGA
* * * *
465520 TGTATCGATACATTTTTCATTGTATTGATACATTATGGGTTTTTACCTAGA
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCCAGA
* * *
465571 TGTATCGATACATTTCTCAATGTAACGATACATTC
1 TGTATCGATACATTTTTCATTGTATCGATACATTC
465606 AGGCATTTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 75 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (51 bp):
TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCCAGA
Found at i:467492 original size:79 final size:78
Alignment explanation
Indices: 467358--467563 Score: 227
Period size: 79 Copynumber: 2.6 Consensus size: 78
467348 TTTGATTAAT
* * ** * **
467358 GTTTTATTTCTAAAACACCGATTTTCCACCATCGGGGATACTCTAACAATGTTATTT-TTGAGGA
1 GTTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCTATTATTTCTAAAGG-
* *
467422 GATACTCTAACCCC
65 GACACTCCAACCCC
467436 GATTTTATTTCTAAAACATCGATTTTTCCACCATC-GGGATACTCCAACCCTATTATTTCTAAAG
1 G-TTTTATTTCTAAAACATCGA-TTTTCCACCATCGGGGATACTCCAACCCTATTATTTCTAAAG
* *
467500 GGACACTCCAACTCT
64 GGACACTCCAACCCC
* * * * *
467515 GGTTTATTTCAAAAATATCGATTTTCGACTATCGGGGATACTCCAACCC
1 GTTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCC
467564 CGTTATCTCC
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
77 10 0.09
78 33 0.31
79 49 0.45
80 16 0.15
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (78 bp):
GTTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCTATTATTTCTAAAGGG
ACACTCCAACCCC
Found at i:470673 original size:16 final size:16
Alignment explanation
Indices: 470652--470683 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
470642 TTTATCCTCT
470652 TTTGATTGAGAAGGAA
1 TTTGATTGAGAAGGAA
470668 TTTGATTGAGAAGGAA
1 TTTGATTGAGAAGGAA
470684 ATGGCAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (16 bp):
TTTGATTGAGAAGGAA
Found at i:472272 original size:25 final size:25
Alignment explanation
Indices: 472219--472272 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
472209 TAAAAATGGT
* * *
472219 AAAAGCAAAAAATGAAAAACACAAG
1 AAAAGCAAAAAATGAAAAAAAAAAC
472244 AAAAGC-AAAAATGAAAGAAAAAAAC
1 AAAAGCAAAAAATGAAA-AAAAAAAC
472269 AAAA
1 AAAA
472273 TAAAGGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.76, C:0.09, G:0.11, T:0.04
Consensus pattern (25 bp):
AAAAGCAAAAAATGAAAAAAAAAAC
Found at i:473958 original size:13 final size:13
Alignment explanation
Indices: 473940--473965 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
473930 CAATTTTTTG
473940 TGTATCGATACAT
1 TGTATCGATACAT
473953 TGTATCGATACAT
1 TGTATCGATACAT
473966 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:474705 original size:21 final size:21
Alignment explanation
Indices: 474664--474707 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
474654 CTCTCTTTTA
* *
474664 TCTCCCCCATTTATTAATAAT
1 TCTCCCCCATTAATCAATAAT
474685 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCATTAATCAA-TAAT
474706 TC
1 TC
474708 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.32, G:0.02, T:0.39
Consensus pattern (21 bp):
TCTCCCCCATTAATCAATAAT
Found at i:476350 original size:21 final size:21
Alignment explanation
Indices: 476326--476372 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
476316 TTTGATGCTG
476326 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
476346 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
476367 ATTTTG
1 ATTTTG
476373 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:476511 original size:13 final size:13
Alignment explanation
Indices: 476493--476531 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
476483 ATAATCACCC
*
476493 TGTATCGATACAG
1 TGTATCGATACAA
476506 TGTATCGATACAA
1 TGTATCGATACAA
476519 TGTATCGATACAA
1 TGTATCGATACAA
476532 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:476542 original size:20 final size:20
Alignment explanation
Indices: 476517--476595 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
476507 GTATCGATAC
476517 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
476537 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
476562 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
476582 CATGTATCGATACA
1 AATGTATCGATACA
476596 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Done.