genome.fa.s800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold800
Parameters: 2 7 7 80 10 50 1000
Length:  101545

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1389--1731	155	2.2	155	79	3	386	24	16	18	39	1.91
5387--5439	21	2.6	21	78	3	63	37	11	13	37	1.80
7411--7436	13	2.0	13	100	0	52	38	15	15	30	1.88
7393--7456	33	2.0	33	90	3	103	43	15	14	26	1.85
13612--13637	13	2.0	13	100	0	52	30	15	15	38	1.88
13759--13805	22	2.3	20	78	10	51	34	19	4	42	1.70
15502--15542	20	2.0	22	90	9	68	36	2	26	34	1.70
16165--16215	20	2.6	20	90	3	77	43	17	13	25	1.86
20149--20206	23	2.5	23	84	13	75	75	5	13	5	1.14
20167--20216	26	2.0	25	85	11	68	82	6	10	2	0.92
20528--20604	22	3.5	22	80	1	82	57	14	20	7	1.62
25942--25966	13	1.9	13	100	0	50	36	16	16	32	1.90
25921--25985	33	2.0	32	88	8	96	30	15	15	38	1.88
26037--26101	33	2.0	33	87	6	96	36	15	16	30	1.90
28853--29417	167	3.4	163	84	6	652	29	9	9	52	1.65
31139--31513	155	2.4	155	78	5	407	23	17	21	37	1.94
34233--34258	13	2.0	13	100	0	52	30	15	15	38	1.88
34213--34276	33	2.0	33	90	3	103	26	14	17	42	1.87
34308--34894	299	2.0	299	99	0	1156	35	14	11	38	1.82
35198--35238	20	2.0	22	85	9	59	34	24	2	39	1.69
37103--37128	13	2.0	13	100	0	52	38	15	15	30	1.88
43262--43287	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43242--43305	33	2.0	33	90	3	103	26	14	17	42	1.87
53428--53604	90	2.0	90	82	3	214	24	22	11	41	1.87
53340--53638	30	9.9	30	67	9	146	24	22	11	41	1.87
53567--53653	30	2.9	29	77	5	95	27	19	9	43	1.81
53493--53660	60	2.8	60	81	1	185	25	20	11	42	1.86
54763--55520	167	4.6	164	75	8	642	32	10	8	48	1.67
61354--61408	20	2.8	20	85	0	74	34	12	12	40	1.82
69804--70271	27	17.1	27	85	2	531	27	32	13	26	1.94
70123--70801	28	23.2	28	77	9	439	28	31	16	22	1.96
70163--70801	60	10.9	56	74	11	269	29	31	16	22	1.96
70326--70703	32	12.5	32	75	11	221	31	29	16	22	1.96
70195--70801	89	6.8	89	77	8	463	29	31	16	22	1.96
70195--70801	147	4.1	148	78	8	585	29	31	16	22	1.96
70937--71115	48	3.8	48	86	0	243	20	26	18	34	1.95
71788--71850	19	3.7	18	76	24	73	36	12	15	34	1.86
71805--71829	13	1.9	13	100	0	50	36	16	16	32	1.90
71788--71848	32	1.9	32	96	0	113	36	13	16	34	1.87
71905--72046	52	2.7	52	88	4	198	33	19	16	30	1.94
75479--75555	20	3.8	20	80	0	100	29	12	14	42	1.83
82424--82537	53	2.2	53	98	1	221	32	12	10	44	1.76
84191--84324	69	1.9	69	86	3	189	20	14	35	30	1.92
84799--84894	38	2.5	38	91	0	156	8	25	13	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85227--85268	16	2.5	17	88	7	59	14	0	7	78	0.95
86357--86508	45	3.4	45	79	6	132	41	15	20	22	1.90
86480--86574	47	2.0	47	83	0	118	46	12	21	20	1.83
86486--86941	46	9.8	46	74	6	251	42	14	21	21	1.89
86674--87060	184	2.1	180	82	5	456	39	15	21	23	1.91
87407--87464	18	3.1	18	82	9	55	17	12	6	63	1.49
87702--87938	92	2.6	92	83	3	300	33	12	24	29	1.92
87869--88121	90	2.8	89	76	8	251	32	13	25	29	1.93
87780--88156	92	4.1	90	77	7	289	31	13	24	30	1.94
89042--89067	13	2.0	13	100	0	52	30	15	15	38	1.88
89022--89085	32	2.0	33	87	3	94	28	15	15	40	1.88
89808--89853	20	2.4	19	82	13	58	47	17	2	32	1.60
89816--89864	20	2.4	20	93	3	80	44	20	4	30	1.70
91161--91203	20	2.1	20	82	4	50	9	27	44	18	1.80
91634--91671	13	2.9	13	96	0	67	31	15	18	34	1.92
93725--93755	15	2.1	15	93	0	53	12	22	16	48	1.80
96155--96230	21	3.7	21	80	3	100	28	17	11	42	1.84
96176--96248	20	3.6	20	81	3	101	31	19	13	35	1.91
96155--96248	41	2.3	41	98	0	179	29	18	12	39	1.88
98680--98718	13	3.0	13	96	0	69	35	15	17	30	1.91
98704--98782	20	3.7	20	75	18	70	45	15	13	25	1.83
100785--100821	15	2.4	15	90	4	56	48	24	18	8	1.75

Tables:   1

The End!