genome.fa.s803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold803
Parameters: 2 7 7 80 10 50 1000
Length:  54279

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4013--4051	16	2.4	16	86	0	51	51	2	7	38	1.44
5127--5179	19	2.7	20	85	2	72	30	18	15	35	1.92
10354--10397	20	2.2	20	91	0	70	11	18	45	25	1.82
17116--17184	27	2.5	28	80	4	86	26	24	11	37	1.89
17186--17348	28	5.9	27	72	4	110	24	29	15	30	1.95
17425--17495	27	2.5	28	86	6	99	25	22	11	40	1.87
17497--17577	27	3.0	27	85	3	101	23	28	14	33	1.94
17433--17552	63	1.9	63	85	0	168	27	25	13	33	1.93
17039--17663	311	2.0	311	96	0	1151	26	28	14	30	1.95
17697--18004	32	10.1	32	81	6	286	32	28	17	21	1.96
17565--18389	28	28.2	28	80	6	668	30	29	17	23	1.97
17638--18389	180	4.2	179	84	6	744	30	29	17	22	1.97
17565--18373	144	5.5	144	79	8	628	29	29	17	23	1.97
18525--18656	48	2.8	48	90	0	201	18	25	20	35	1.95
19942--20008	33	2.0	33	88	0	98	34	11	13	40	1.81
19962--19986	13	1.9	13	100	0	50	36	16	16	32	1.90
20050--20074	13	1.9	13	100	0	50	32	16	16	36	1.90
20083--20203	52	2.3	52	94	0	215	35	18	17	28	1.93
38463--39000	27	19.6	27	87	2	725	24	32	14	29	1.94
38464--39000	248	2.2	248	88	1	790	24	32	14	29	1.94
38468--39000	28	19.4	28	87	2	674	24	32	14	29	1.94
38996--39477	32	15.8	32	86	4	417	29	30	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41038--41080	20	2.2	18	84	12	50	20	2	2	74	1.04
45926--45978	26	2.0	27	85	3	72	41	0	1	56	1.10
46608--46658	20	2.6	20	81	3	59	35	17	9	37	1.83
46605--46657	19	2.7	19	82	2	61	33	16	9	39	1.81
46708--46732	13	1.9	13	100	0	50	32	16	20	32	1.94
46688--46752	33	2.0	32	85	11	87	35	15	18	30	1.92
52202--52250	21	2.3	21	82	6	55	48	2	0	48	1.12
52518--52598	23	3.5	23	62	12	58	60	2	1	35	1.18
52500--52593	46	2.0	46	100	0	188	58	4	2	35	1.29

Tables:   1

The End!