Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold808
Parameters: 2 7 7 80 10 50 1000
Length:  140563

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100166--100243
42
1.9
40
92
7
131
52
0
8
38
1.33
103920--103974
22
2.5
21
83
16
67
40
0
7
52
1.29
105217--105264
22
2.3
22
86
10
66
29
8
6
56
1.53
106045--106173
65
2.0
66
84
4
172
42
12
10
34
1.77
106168--106265
50
2.0
50
91
0
160
44
11
14
29
1.79
107093--107131
18
2.1
18
85
9
51
56
0
0
43
0.99
107257--107298
21
1.9
21
85
9
57
38
4
4
52
1.44
107417--107553
36
3.6
36
71
16
116
37
3
5
54
1.40
107476--107501
11
2.4
11
100
0
52
42
0
0
57
0.98
107353--107994
290
2.2
285
85
6
832
36
8
8
46
1.66
111388--111654
67
3.9
67
83
7
308
31
17
8
42
1.79
111385--111654
71
3.9
70
82
7
329
30
17
8
43
1.79
111590--111942
92
3.9
92
84
7
490
33
15
8
41
1.78
111881--111999
57
2.1
58
91
1
195
31
18
10
39
1.85
111939--112140
91
2.2
91
88
5
302
34
16
8
40
1.79
112728--113080
121
2.9
118
83
8
388
51
2
3
42
1.30
113187--113236
11
4.6
11
77
2
57
62
0
0
38
0.96
113187--113236
22
2.3
21
89
3
73
62
0
0
38
0.96
113486--113535
11
4.6
11
77
2
57
62
0
0
38
0.96
113942--114076
72
1.9
72
86
5
197
45
0
0
52
1.11
114173--114224
14
3.9
14
80
12
56
50
3
0
46
1.20
114173--114224
27
1.9
27
88
7
79
50
3
0
46
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114870--114902
16
2.1
16
94
0
57
54
12
3
30
1.52
115458--115500
22
2.0
22
81
9
52
39
4
4
51
1.44
126542--126566
13
1.9
13
100
0
50
36
16
16
32
1.90
126522--126588
33
2.0
33
88
0
98
32
11
14
40
1.83
126629--126653
13
1.9
13
100
0
50
32
16
16
36
1.90
126642--126790
52
2.9
51
90
4
235
33
19
16
30
1.94
130816--130842
10
2.7
10
100
0
54
0
0
22
77
0.76
140529--140563
1
35.0
1
94
0
61
97
2
0
0
0.19

Tables:   1   2

The End!