Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold81
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1151237
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.32
Warning! 79344 characters in sequence are not A, C, G, or T
File 6 of 9
Found at i:682392 original size:11 final size:11
Alignment explanation
Indices: 682376--682405 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
682366 GTATTATTTT
682376 TTAATATTATA
1 TTAATATTATA
682387 TTAATATTATA
1 TTAATATTATA
*
682398 TTATTATT
1 TTAATATT
682406 TTTAAGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTAATATTATA
Found at i:682656 original size:20 final size:21
Alignment explanation
Indices: 682618--682657 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
682608 TGATAATTTT
* *
682618 AAATATAATTAAATTATTAAG
1 AAATATAATAAAATAATTAAG
682639 AAATAT-ATAAAATAATTAA
1 AAATATAATAAAATAATTAA
682658 AGCATAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (21 bp):
AAATATAATAAAATAATTAAG
Found at i:682781 original size:19 final size:18
Alignment explanation
Indices: 682750--682788 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
682740 ATACGATTAT
682750 AATATAAAAAAATATATG
1 AATATAAAAAAATATATG
682768 AATATAATAAAAATATATG
1 AATATAA-AAAAATATATG
682787 AA
1 AA
682789 CTTACTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (18 bp):
AATATAAAAAAATATATG
Found at i:683440 original size:45 final size:44
Alignment explanation
Indices: 683391--683545 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 44
683381 TAATTTTAAC
*
683391 TATAAAATTATAAATATAATATAAAATTTTAAATATACAATATGA
1 TATAAAATTATAAATAT-ATATAAAATTTTAAATATAAAATATGA
* * *
683436 TAT-AAA-TATATATATATGTAAAAATTTATATAATATAAAATATTAA
1 TATAAAATTATAAATATATAT-AAAATTT-TA-AATATAAAATA-TGA
* *
683482 TTATTAAAATT-TAAATATATATAAAA-TAT-AAT-TATAATATG-
1 -TA-TAAAATTATAAATATATATAAAATTTTAAATATAAAATATGA
683523 -ATAAAATATATAAATATAATATA
1 TATAAAAT-TATAAATAT-ATATA
683546 TATACATAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
38 6 0.07
39 2 0.02
40 7 0.08
41 5 0.06
42 4 0.04
43 21 0.23
44 8 0.09
45 13 0.14
46 3 0.03
47 3 0.03
48 5 0.06
49 12 0.13
50 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (44 bp):
TATAAAATTATAAATATATATAAAATTTTAAATATAAAATATGA
Found at i:683460 original size:18 final size:19
Alignment explanation
Indices: 683421--683539 Score: 64
Period size: 18 Copynumber: 6.7 Consensus size: 19
683411 ATAAAATTTT
* *
683421 AAATATACA-ATATGATAT
1 AAATATATATATATGATAA
683439 AAATATATATATATG-TAA
1 AAATATATATATATGATAA
*
683457 AAATTTATATA-AT-AT-A
1 AAATATATATATATGATAA
*
683473 AAATAT-TA-AT-T-ATTA
1 AAATATATATATATGATAA
* *
683488 AAATTTAAATATAT-AT-A
1 AAATATATATATATGATAA
683505 AAATATAATTATAATATGAT-A
1 AAATAT-A-TAT-ATATGATAA
*
683526 AAATATATAAATAT
1 AAATATATATATAT
683540 AATATATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
14 4 0.05
15 8 0.10
16 7 0.09
17 11 0.14
18 28 0.35
19 9 0.11
20 5 0.06
21 9 0.11
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (19 bp):
AAATATATATATATGATAA
Found at i:683491 original size:15 final size:16
Alignment explanation
Indices: 683468--683517 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
683458 AATTTATATA
683468 ATATAAAATATTAATT
1 ATATAAAATATTAATT
683484 AT-TAAAAT-TTAAATAT
1 ATATAAAATATT-AAT-T
683500 ATATAAAATA-TAATT
1 ATATAAAATATTAATT
683515 ATA
1 ATA
683518 ATATGATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
14 2 0.07
15 13 0.43
16 8 0.27
17 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATATTAATT
Found at i:683494 original size:31 final size:31
Alignment explanation
Indices: 683404--683542 Score: 103
Period size: 31 Copynumber: 4.5 Consensus size: 31
683394 AAAATTATAA
* * *
683404 ATATAATATAAAATT-TT-AAATATACAATAT
1 ATATAAAATATAATTATTAAAATTTA-AATAT
*
683434 GATAT-AAATATATATATATGTAAAAATTTATATA-
1 -ATATAAAATATA-AT-TAT-T-AAAATTTAAATAT
683468 ATATAAAATATTAATTATTAAAATTTAAATAT
1 ATATAAAATA-TAATTATTAAAATTTAAATAT
* *
683500 ATATAAAATATAATTA-TAATATGATAAA-AT
1 ATATAAAATATAATTATTAAAAT-TTAAATAT
683530 ATAT-AAATATAAT
1 ATATAAAATATAAT
683543 ATATATACAT
Statistics
Matches: 91, Mismatches: 7, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
29 9 0.10
30 16 0.18
31 27 0.30
32 12 0.13
33 8 0.09
34 8 0.09
35 5 0.05
36 6 0.07
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (31 bp):
ATATAAAATATAATTATTAAAATTTAAATAT
Found at i:683530 original size:32 final size:32
Alignment explanation
Indices: 683463--683534 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
683453 GTAAAAATTT
*
683463 ATATAATATAAAATATTAATTATTAAAATTTAA
1 ATAT-ATATAAAATATTAATTATTAAAATTAAA
*
683496 ATATATATAAAATA-TAATTA-TAATATGATAAA
1 ATATATATAAAATATTAATTATTAAAAT--TAAA
683528 ATATATA
1 ATATATA
683535 AATATAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 5 0.14
31 6 0.17
32 20 0.57
33 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (32 bp):
ATATATATAAAATATTAATTATTAAAATTAAA
Found at i:683534 original size:30 final size:30
Alignment explanation
Indices: 683391--683547 Score: 101
Period size: 30 Copynumber: 5.1 Consensus size: 30
683381 TAATTTTAAC
* *
683391 TATAAAATTATAAATATAATATAAAATTTTAAA
1 TATAAAA-TATAAATAT-ATATAAAA-TATAAT
* * * *
683424 TATACAATAT-GATATAAAT-ATATATATAT
1 TATAAAATATAAATATATATAAAATATA-AT
* *
683453 GTA-AAAATTTATATA-ATATAAAATATTAAT
1 -TATAAAATATAAATATATATAAAATA-TAAT
*
683483 TATTAAAATTTAAATATATATAAAATATAAT
1 TA-TAAAATATAAATATATATAAAATATAAT
*
683514 TATAATATGATAAA-ATATAT-AAATATAAT
1 TATAAAAT-ATAAATATATATAAAATATAAT
683543 ATATA
1 -TATA
683548 TACATAAATA
Statistics
Matches: 100, Mismatches: 14, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
28 3 0.03
29 22 0.22
30 29 0.29
31 27 0.27
32 13 0.13
33 6 0.06
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (30 bp):
TATAAAATATAAATATATATAAAATATAAT
Found at i:683761 original size:26 final size:25
Alignment explanation
Indices: 683717--683795 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 25
683707 TTTTAAATAC
** *
683717 TAAATAAATATATCTAATACATATTT
1 TAAATAAATATA-AAAATAAATATTT
683743 TAAAATAAATATAAAAATATAATATTT
1 T-AAATAAATATAAAAATA-AATATTT
*
683770 TAAATATATATAAAAATAAATATTT
1 TAAATAAATATAAAAATAAATATTT
683795 T
1 T
683796 CATATTAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
25 8 0.17
26 21 0.45
27 18 0.38
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (25 bp):
TAAATAAATATAAAAATAAATATTT
Found at i:684939 original size:33 final size:35
Alignment explanation
Indices: 684873--684939 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 35
684863 ATAATATTTT
* *
684873 AAATATATAAAAAATAACACGAACATAATATAAAA
1 AAATATATAAAAAATAACACAAACATAACATAAAA
* *
684908 AAATA-AT-AAAAATAACATAAATATAACATAAA
1 AAATATATAAAAAATAACACAAACATAACATAAA
684940 TATATGAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 21 0.75
34 2 0.07
35 5 0.18
ACGTcount: A:0.70, C:0.07, G:0.01, T:0.21
Consensus pattern (35 bp):
AAATATATAAAAAATAACACAAACATAACATAAAA
Found at i:684985 original size:10 final size:11
Alignment explanation
Indices: 684897--685003 Score: 65
Period size: 11 Copynumber: 8.9 Consensus size: 11
684887 TAACACGAAC
684897 ATAATATAAAA
1 ATAATATAAAA
684908 A-AATAATAAAA
1 ATAAT-ATAAAA
* *
684919 ATAACATAAAT
1 ATAATATAAAA
*
684930 ATAACATAAATA
1 ATAATATAAA-A
684942 TATGAATATATAAA
1 -AT-AATATA-AAA
684956 ATATTATATTAATTAA
1 ATA--ATA-TAA--AA
684972 ATAAT-TAAAA
1 ATAATATAAAA
*
684982 ATAATATAAAT
1 ATAATATAAAA
684993 ATGAATATAAA
1 AT-AATATAAA
685004 CACATAATTT
Statistics
Matches: 78, Mismatches: 5, Indels: 25
0.72 0.05 0.23
Matches are distributed among these distances:
10 10 0.13
11 29 0.37
12 14 0.18
13 4 0.05
14 12 0.15
15 4 0.05
16 5 0.06
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:685636 original size:65 final size:65
Alignment explanation
Indices: 685495--685623 Score: 222
Period size: 65 Copynumber: 2.0 Consensus size: 65
685485 CAAATTCAGG
685495 CCAAGCCAATGTCTTAAATCTAGAACACAAAAAAGCCATGGATTGATGTAATTACTCCTTATAAC
1 CCAAGCCAATGTCTTAAATCTAGAACACAAAAAAGCCATGGATTGATGTAATTACTCCTTATAAC
* * * *
685560 CCAAGCCAATGTTTTAAATCTAGAACACAGACAAGCCATGGATTGCTGTAATTACTCCTTATAA
1 CCAAGCCAATGTCTTAAATCTAGAACACAAAAAAGCCATGGATTGATGTAATTACTCCTTATAA
685624 GTCACGTTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (65 bp):
CCAAGCCAATGTCTTAAATCTAGAACACAAAAAAGCCATGGATTGATGTAATTACTCCTTATAAC
Found at i:685669 original size:11 final size:9
Alignment explanation
Indices: 685643--685668 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
685633 ATGTATCGTA
685643 TTTTATATT
1 TTTTATATT
685652 TTTTATATT
1 TTTTATATT
685661 TTTTATAT
1 TTTTATAT
685669 AAATATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTATATT
Found at i:685685 original size:17 final size:19
Alignment explanation
Indices: 685665--685700 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
685655 TATATTTTTT
685665 ATATAAA-TA-TAAATATA
1 ATATAAATTATTAAATATA
685682 ATATAAATTATTAAATATA
1 ATATAAATTATTAAATATA
685701 TTATTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 2 0.12
19 8 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
ATATAAATTATTAAATATA
Found at i:685757 original size:35 final size:33
Alignment explanation
Indices: 685692--685771 Score: 79
Period size: 35 Copynumber: 2.3 Consensus size: 33
685682 ATATAAATTA
*
685692 TTAAATATATTATTTTAGTTATATTAATTATAT
1 TTAAATATATTATTATAGTTATATTAATTATAT
* * * *
685725 TTAAATATATCTTATTATATTTATTTTTATTATTT
1 TTAAATATA--TTATTATAGTTATATTAATTATAT
*
685760 TTATATCATATT
1 TTAAAT-ATATT
685772 TAAAATTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
33 9 0.24
34 2 0.05
35 24 0.63
36 3 0.08
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (33 bp):
TTAAATATATTATTATAGTTATATTAATTATAT
Found at i:686136 original size:18 final size:18
Alignment explanation
Indices: 686111--686159 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 18
686101 TCGAGATTTT
686111 TTTTAAAATAA-TTAAAA
1 TTTTAAAATAATTTAAAA
686128 TTATTAAAATAATTTTTAAAA
1 TT-TTAAAATAA--TTTAAAA
686149 TTTTAAAATAA
1 TTTTAAAATAA
686160 ATAATATCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.07
18 9 0.32
20 9 0.32
21 8 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTTTAAAATAATTTAAAA
Found at i:686188 original size:17 final size:17
Alignment explanation
Indices: 686150--686191 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
686140 TTTTTAAAAT
686150 TTTAA-AATAAATAATA
1 TTTAATAATAAATAATA
*
686166 TCTAATAATAAAT-ATAA
1 TTTAATAATAAATAAT-A
686183 TTTAATAAT
1 TTTAATAAT
686192 TTTTATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTAATAATAAATAATA
Found at i:688673 original size:15 final size:15
Alignment explanation
Indices: 688647--688684 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
688637 ATATTTTTAT
*
688647 AATA-TTTAAAAAAA
1 AATATTTTAAAAATA
688661 AATTATTTTAAAAATA
1 AA-TATTTTAAAAATA
688677 AATATTTT
1 AATATTTT
688685 TATATTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 8 0.38
16 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATTTTAAAAATA
Found at i:688686 original size:16 final size:16
Alignment explanation
Indices: 688651--688684 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
688641 TTTTATAATA
688651 TTTAAAAAAAAATTAT
1 TTTAAAAAAAAATTAT
*
688667 TTTAAAAATAAA-TAT
1 TTTAAAAAAAAATTAT
688682 TTT
1 TTT
688685 TATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTAAAAAAAAATTAT
Found at i:689488 original size:22 final size:23
Alignment explanation
Indices: 689461--689511 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
689451 GTAAATATAA
689461 TTTAAA-TTATTAAAAATTAATT
1 TTTAAATTTATTAAAAATTAATT
689483 TTTAAATTTATTAAAAATTAATT
1 TTTAAATTTATTAAAAATTAATT
689506 TTTAAA
1 TTTAAA
689512 AGTGATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 6 0.21
23 22 0.79
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TTTAAATTTATTAAAAATTAATT
Found at i:689519 original size:24 final size:23
Alignment explanation
Indices: 689461--689519 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
689451 GTAAATATAA
*
689461 TTTAAA-TTATTAAAAATTAATT
1 TTTAAAGTGATTAAAAATTAATT
* *
689483 TTTAAATTTATTAAAAATTAATT
1 TTTAAAGTGATTAAAAATTAATT
689506 TTTAAAAGTGATTA
1 TTT-AAAGTGATTA
689520 TTTGAGTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 6 0.18
23 19 0.58
24 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TTTAAAGTGATTAAAAATTAATT
Found at i:689812 original size:14 final size:14
Alignment explanation
Indices: 689795--689827 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
689785 ATTTTTATTT
689795 AAAT-TTAATTATAA
1 AAATATTAA-TATAA
689809 AAATATTAATATAA
1 AAATATTAATATAA
689823 AAATA
1 AAATA
689828 ATATTTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAATATTAATATAA
Found at i:690176 original size:23 final size:23
Alignment explanation
Indices: 690126--690187 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
690116 TTTTACATTT
*
690126 AATTTAATTAATTTAAAAAATAA
1 AATTTAATAAATTTAAAAAATAA
* * **
690149 TATTTTATAAATTTAAAATTTAA
1 AATTTAATAAATTTAAAAAATAA
*
690172 AATTTATTAATATTTA
1 AATTTAATAA-ATTTA
690188 TATTTTTTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
23 25 0.83
24 5 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTTAATAAATTTAAAAAATAA
Found at i:690436 original size:19 final size:20
Alignment explanation
Indices: 690412--690462 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
690402 TTGAATCTTT
690412 AAAATATTTTTATA-TTAAA
1 AAAATATTTTTATATTTAAA
*
690431 AAAATATTATTA-ATTTAAA
1 AAAATATTTTTATATTTAAA
* *
690450 TACATATTTTTAT
1 AAAATATTTTTAT
690463 TAATTTTACA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 1 0.04
19 25 0.96
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
AAAATATTTTTATATTTAAA
Found at i:690908 original size:3 final size:3
Alignment explanation
Indices: 690900--690936 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
690890 AATTTAAGAA
690900 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
690937 GTTGAATTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:691443 original size:2 final size:2
Alignment explanation
Indices: 691436--691473 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
691426 AGTTTAGTTC
691436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
691474 CTCCATTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:692483 original size:18 final size:17
Alignment explanation
Indices: 692460--692524 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 17
692450 CTAAGATTCG
692460 ATAATTATAATATAAAAA
1 ATAATTATAA-ATAAAAA
* *
692478 ATAATTA-AAATATAAC
1 ATAATTATAAATAAAAA
*
692494 ATAA-TATAAA-AAAAG
1 ATAATTATAAATAAAAA
*
692509 ATAAATATAATATAAA
1 ATAATTATAA-ATAAA
692525 TAGATAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
15 9 0.23
16 17 0.44
17 3 0.08
18 10 0.26
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
ATAATTATAAATAAAAA
Found at i:692531 original size:19 final size:16
Alignment explanation
Indices: 692496--692534 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 16
692486 AATATAACAT
692496 AATATAAAAAAAGATA
1 AATATAAAAAAAGATA
692512 AATATAATATAAATAGATA
1 AATATAA-A-AAA-AGATA
692531 AATA
1 AATA
692535 ATGTATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 1 0.05
18 3 0.15
19 9 0.45
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (16 bp):
AATATAAAAAAAGATA
Found at i:693229 original size:19 final size:20
Alignment explanation
Indices: 693195--693233 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
693185 AGCTATCTTA
693195 TAAATTTTTATAATTAAATT
1 TAAATTTTTATAATTAAATT
*
693215 TAAATTTTT-TTATTAAATT
1 TAAATTTTTATAATTAAATT
693234 AACAGTAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TAAATTTTTATAATTAAATT
Found at i:693612 original size:2 final size:2
Alignment explanation
Indices: 693607--693634 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
693597 ATTTGAAGAT
693607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
693635 ATGGTGCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:694436 original size:14 final size:14
Alignment explanation
Indices: 694396--694428 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
694386 TCATCTTTAA
*
694396 ATTTATCATATTAT
1 ATTTATTATATTAT
694410 ATTTATTATATTAT
1 ATTTATTATATTAT
694424 -TTTAT
1 ATTTAT
694429 GTTTATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTATTATATTAT
Found at i:695008 original size:16 final size:16
Alignment explanation
Indices: 694974--695011 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
694964 TGACTCTAAC
*
694974 CCAAAA-GAATCGAAT
1 CCAAAATGAATCGAAA
*
694989 CCAAAATGATTCGAAA
1 CCAAAATGAATCGAAA
695005 CCAAAAT
1 CCAAAAT
695012 AACTCAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.53, C:0.21, G:0.11, T:0.16
Consensus pattern (16 bp):
CCAAAATGAATCGAAA
Found at i:696074 original size:28 final size:30
Alignment explanation
Indices: 696034--696090 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 30
696024 TAATCAATTA
696034 AATTAATAATTTAAA-TAA-AAAATTAATC
1 AATTAATAATTTAAATTAATAAAATTAATC
* *
696062 AATTATTATTTTAAATTAATAAAATTAAT
1 AATTAATAATTTAAATTAATAAAATTAAT
696091 TAAATTAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 13 0.52
29 3 0.12
30 9 0.36
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
AATTAATAATTTAAATTAATAAAATTAATC
Found at i:696097 original size:28 final size:27
Alignment explanation
Indices: 696029--696097 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 27
696019 TACAATAATC
696029 AATTAAATTAATAATTTAAATAAAAAATT
1 AATTAAATT-AT-ATTTAAATAAAAAATT
*
696058 AA-TCAATTATTATTTTAAATTAATAAAATT
1 AATTAAATTA-TA-TTTAAA-TAA-AAAATT
696088 AATTAAATTA
1 AATTAAATTA
696098 GTCTAACAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
27 2 0.06
28 12 0.36
29 5 0.15
30 8 0.24
31 6 0.18
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (27 bp):
AATTAAATTATATTTAAATAAAAAATT
Found at i:696451 original size:4 final size:4
Alignment explanation
Indices: 696442--696468 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
696432 AAAGACAACC
696442 TTAT TTAT TTAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA
696469 GCTATTGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:698101 original size:20 final size:19
Alignment explanation
Indices: 698068--698120 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
698058 AATTTTATTT
698068 TAAAAAATTAAATATTAAA
1 TAAAAAATTAAATATTAAA
* *
698087 TAAAAAATTTTAATATTATA
1 TAAAAAA-TTAAATATTAAA
*
698107 T-AAATATTAAATAT
1 TAAAAAATTAAATAT
698121 AATAAATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 7 0.24
19 11 0.38
20 11 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAAAAATTAAATATTAAA
Found at i:698765 original size:2 final size:2
Alignment explanation
Indices: 698758--698789 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
698748 AATCAATGTG
698758 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
698790 ACATAATCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:699682 original size:27 final size:30
Alignment explanation
Indices: 699629--699687 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 30
699619 ATAACTTCGA
*
699629 AAAATTATGTTTATAATTCATGATTTT-TT
1 AAAATTATGTTTATAATTCATCATTTTATT
* *
699658 AAAA-TAT-TTTATCATTCATCTTTTTATT
1 AAAATTATGTTTATAATTCATCATTTTATT
699686 AA
1 AA
699688 TTAAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 15 0.58
28 7 0.27
29 4 0.15
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (30 bp):
AAAATTATGTTTATAATTCATCATTTTATT
Found at i:699832 original size:45 final size:46
Alignment explanation
Indices: 699768--699858 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 46
699758 ACGTGCAACA
699768 TGATTAACCAAAATATGAATAAAGAGTGAGAGGTAAAAAAA-ATAT
1 TGATTAACCAAAATATGAATAAAGAGTGAGAGGTAAAAAAATATAT
*
699813 TGATTAACCAAAATATGAATAGAGAGTGAGAGGTAAAAAAATATAT
1 TGATTAACCAAAATATGAATAAAGAGTGAGAGGTAAAAAAATATAT
699859 AACCCAAAAC
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 40 0.91
46 4 0.09
ACGTcount: A:0.54, C:0.04, G:0.19, T:0.23
Consensus pattern (46 bp):
TGATTAACCAAAATATGAATAAAGAGTGAGAGGTAAAAAAATATAT
Found at i:699915 original size:17 final size:18
Alignment explanation
Indices: 699883--699916 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
699873 AATCCAAATT
699883 TAAAATAATAAATAAAAA
1 TAAAATAATAAATAAAAA
*
699901 TAAAAT-ATTAATAAAA
1 TAAAATAATAAATAAAA
699917 TATCATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
TAAAATAATAAATAAAAA
Found at i:701751 original size:31 final size:34
Alignment explanation
Indices: 701679--701776 Score: 87
Period size: 32 Copynumber: 2.9 Consensus size: 34
701669 AAAACATGAA
** * *
701679 AATATATCAAAA-AAATAAAAATAATATAAGTAAATG
1 AATATATCAAAATCTATATAAAT-ATATAA-T-AATT
*
701715 AATATAT-TAAATCTATATAAA-AT-TAATAATT
1 AATATATCAAAATCTATATAAATATATAATAATT
*
701746 AATATATCAAAATTTATATAAATATATAATA
1 AATATATCAAAATCTATATAAATATATAATA
701777 TTTTAATAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
31 10 0.20
32 13 0.25
33 5 0.10
34 7 0.14
35 3 0.06
36 13 0.25
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (34 bp):
AATATATCAAAATCTATATAAATATATAATAATT
Found at i:701769 original size:20 final size:20
Alignment explanation
Indices: 701728--701808 Score: 76
Period size: 19 Copynumber: 4.0 Consensus size: 20
701718 ATATTAAATC
*
701728 TATATAAAATTAATAATTAA
1 TATATAAAATTAATAATAAA
*
701748 TATATCAAAATTTAT-ATAAA
1 TATAT-AAAATTAATAATAAA
* *
701768 TATATAATATT-TTAATAAA
1 TATATAAAATTAATAATAAA
* *
701787 AATATAATATTAATAAATAAA
1 TATATAAAATTAAT-AATAAA
701808 T
1 T
701809 TATTGAATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.02
19 20 0.40
20 15 0.30
21 14 0.28
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (20 bp):
TATATAAAATTAATAATAAA
Found at i:702375 original size:17 final size:17
Alignment explanation
Indices: 702355--702387 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
702345 GATTAAAAAT
702355 ATTTATATTTTAATTAA
1 ATTTATATTTTAATTAA
*
702372 ATTTATTTTTTAATTA
1 ATTTATATTTTAATTA
702388 TGAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTATATTTTAATTAA
Found at i:702884 original size:21 final size:22
Alignment explanation
Indices: 702858--702899 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
702848 AATTGACTCG
702858 AATTAT-TATTTAATAATAAAA
1 AATTATATATTTAATAATAAAA
*
702879 AATTATATATTTAATTATAAA
1 AATTATATATTTAATAATAAA
702900 TATTTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTATATATTTAATAATAAAA
Found at i:703050 original size:15 final size:16
Alignment explanation
Indices: 703030--703059 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
703020 TATGTTAAAT
703030 TTATATTAT-TTTTTA
1 TTATATTATCTTTTTA
703045 TTATATTATCTTTTT
1 TTATATTATCTTTTT
703060 TCGTATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TTATATTATCTTTTTA
Found at i:703671 original size:2 final size:2
Alignment explanation
Indices: 703664--703693 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
703654 ACTTTTAACC
703664 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
703694 GTAATTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:704405 original size:4 final size:4
Alignment explanation
Indices: 704396--704422 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
704386 TAAGAGGAAT
704396 TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTA
704423 GTGCCAGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:705100 original size:18 final size:17
Alignment explanation
Indices: 705066--705133 Score: 54
Period size: 17 Copynumber: 3.9 Consensus size: 17
705056 TTTTTAAGGT
705066 ATTTTATATTTATATAA
1 ATTTTATATTTATATAA
705083 ATTTTGATATATTA-AT-A
1 ATTTT-ATAT-TTATATAA
*
705100 A-TTTATA-TTATATTA
1 ATTTTATATTTATATAA
705115 ATTTTGAAATATTTATATA
1 ATTTT---ATATTTATATA
705134 TTTATGTTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 15
0.72 0.02 0.26
Matches are distributed among these distances:
13 3 0.07
14 2 0.05
15 5 0.12
16 6 0.15
17 7 0.17
18 6 0.15
19 6 0.15
20 6 0.15
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTTATATTTATATAA
Found at i:705118 original size:32 final size:33
Alignment explanation
Indices: 705068--705146 Score: 106
Period size: 32 Copynumber: 2.4 Consensus size: 33
705058 TTTAAGGTAT
* *
705068 TTTATATTTATATAAATTTTGATATATTAATA-A
1 TTTATA-TTATATTAATTTTGAAATATTAATATA
*
705101 TTTATATTATATTAATTTTGAAATATTTATATA
1 TTTATATTATATTAATTTTGAAATATTAATATA
*
705134 TTTATGTTATATT
1 TTTATATTATATT
705147 TTAATTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 22 0.54
33 19 0.46
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (33 bp):
TTTATATTATATTAATTTTGAAATATTAATATA
Found at i:706320 original size:2 final size:2
Alignment explanation
Indices: 706313--706342 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
706303 ATAGTTTCTT
*
706313 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
706343 AAGAATTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:708531 original size:146 final size:150
Alignment explanation
Indices: 708332--708633 Score: 420
Period size: 146 Copynumber: 2.0 Consensus size: 150
708322 TAAATATCTG
*
708332 GAAAA-CTATATATAATTAGATTATTAATTATTATTGAATTTATTTTAGTGGGACTGAGTCAACT
1 GAAAATCTATATATAATTA-ATTATTAATTATTATTGAATTTATTTTAGCGGGACTGAGTCAACT
* * * * *
708396 CGGTGG-GGAATCGTTCCGGGTTGGTTTAATGATTACTGACCCGTTAAAAA-TGGCGGTGGTGAC
65 CGGTGGTGG-ATCGTTCCGCGTTGGCTTAATCATTACTAACACGTTAAAAAGTGGCGGTGGTGAC
*
708459 TCAGATTCCACGGTG-GGGGCT
129 TCAGATTCCACGGTGCAGGGCT
* **
708480 GAAAATCTATATATAATT-A-TA-TATTTATTATTGAAATTTATTTTAGCGGGACTGAGTTGACT
1 GAAAATCTATATATAATTAATTATTAATTATTATTG-AATTTATTTTAGCGGGACTGAGTCAACT
*
708542 CGGTGGTGGATCGTTCCGCGTTGGCTTAATCATTATTAACACGTTAAAAAGTGGCGGTGGTGACT
65 CGGTGGTGGATCGTTCCGCGTTGGCTTAATCATTACTAACACGTTAAAAAGTGGCGGTGGTGACT
*
708607 CAGATTCCATGGTGCAGGGCT
130 CAGATTCCACGGTGCAGGGCT
708628 GAAAAT
1 GAAAAT
708634 AATTCTGTTT
Statistics
Matches: 137, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
145 11 0.08
146 68 0.50
147 30 0.22
148 16 0.12
149 12 0.09
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (150 bp):
GAAAATCTATATATAATTAATTATTAATTATTATTGAATTTATTTTAGCGGGACTGAGTCAACTC
GGTGGTGGATCGTTCCGCGTTGGCTTAATCATTACTAACACGTTAAAAAGTGGCGGTGGTGACTC
AGATTCCACGGTGCAGGGCT
Found at i:708755 original size:17 final size:16
Alignment explanation
Indices: 708720--708769 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
708710 ATTACCCTTT
* *
708720 TTTAATTTTAATTTAA
1 TTTAATTTTTATTTTA
708736 TTTAAATTGTTT-TTTTA
1 TTT-AATT-TTTATTTTA
708753 TTTAATTTTTATTTTA
1 TTTAATTTTTATTTTA
708769 T
1 T
708770 AGATAACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
15 3 0.10
16 13 0.45
17 11 0.38
18 2 0.07
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (16 bp):
TTTAATTTTTATTTTA
Found at i:708759 original size:16 final size:17
Alignment explanation
Indices: 708723--708769 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
708713 ACCCTTTTTT
* *
708723 AATTTTAATTTAATTTA
1 AATTTTTATTTTATTTA
708740 AATTGTTT-TTTTATTT-
1 AATT-TTTATTTTATTTA
708756 AATTTTTATTTTAT
1 AATTTTTATTTTAT
708770 AGATAACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 3 0.12
16 10 0.38
17 11 0.42
18 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
AATTTTTATTTTATTTA
Found at i:708990 original size:19 final size:20
Alignment explanation
Indices: 708963--709010 Score: 71
Period size: 19 Copynumber: 2.4 Consensus size: 20
708953 ATTAAGTGAT
*
708963 TATTAAATATAAAT-ATATA
1 TATTTAATATAAATAATATA
708982 TATTTAATATAAATAAATATA
1 TATTTAATATAAAT-AATATA
709003 TATTTAAT
1 TATTTAAT
709011 TTTTTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 13 0.50
21 13 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TATTTAATATAAATAATATA
Found at i:709039 original size:23 final size:25
Alignment explanation
Indices: 708971--709040 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 25
708961 ATTATTAAAT
*
708971 ATAAATATATATATT--TAA-TATAA
1 ATAAATATATAT-TTAATAATTTTAA
**
708994 ATAAATATATATTTAATTTTTTTAA
1 ATAAATATATATTTAATAATTTTAA
709019 A-AAAT-TATATTTAATAATTTTA
1 ATAAATATATATTTAATAATTTTA
709041 TTTTATATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
22 2 0.05
23 27 0.69
24 5 0.13
25 5 0.13
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
ATAAATATATATTTAATAATTTTAA
Found at i:709814 original size:17 final size:18
Alignment explanation
Indices: 709775--709815 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
709765 TTTTTATATT
709775 ATAAAAATTTAAAATTAA
1 ATAAAAATTTAAAATTAA
*
709793 TTAAAAA-TT-AAATTAAA
1 ATAAAAATTTAAAATT-AA
709810 ATAAAA
1 ATAAAA
709816 TCAGATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 5 0.25
17 9 0.45
18 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAAAATTTAAAATTAA
Found at i:710732 original size:2 final size:2
Alignment explanation
Indices: 710725--710755 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
710715 CTAAACAAAG
710725 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
710756 AACCATTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:711024 original size:19 final size:20
Alignment explanation
Indices: 711002--711042 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
710992 AATATATAAA
711002 TTTAAAATATTTATA-TATT
1 TTTAAAATATTTATATTATT
**
711021 TTTATTATATTTATATTATT
1 TTTAAAATATTTATATTATT
711041 TT
1 TT
711043 ATTTATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTAAAATATTTATATTATT
Found at i:711063 original size:17 final size:17
Alignment explanation
Indices: 711009--711059 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 17
710999 AAATTTAAAA
711009 TATTTATATATTTTTATT
1 TATTTATAT-TTTTTATT
711027 ATATTTATATTATTTTATT
1 -TATTTATATT-TTTTATT
711046 TA-TTATATTTTTTA
1 TATTTATATTTTTTA
711060 ATTTTTTTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.16
17 7 0.23
18 3 0.10
19 16 0.52
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTATATTTTTTATT
Found at i:711827 original size:23 final size:23
Alignment explanation
Indices: 711780--711872 Score: 67
Period size: 23 Copynumber: 4.3 Consensus size: 23
711770 TGAATGATTT
*
711780 TATTTT-TTTAATTATATTTATA
1 TATTTTATTTAATTATATATATA
*
711802 TATTTTATTTTATTATA-ATATAA
1 TATTTTATTTAATTATATATAT-A
**
711825 TATTTTA-ACAACTTATAT-TATA
1 TATTTTATTTAA-TTATATATATA
*
711847 TATTTTA---AAATATATAT-TA
1 TATTTTATTTAATTATATATATA
711866 TATTTTA
1 TATTTTA
711873 ATTATTTAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
19 14 0.23
20 3 0.05
22 18 0.30
23 25 0.42
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TATTTTATTTAATTATATATATA
Found at i:711864 original size:21 final size:22
Alignment explanation
Indices: 711814--711868 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
711804 TTTTATTTTA
*
711814 TTATAATATAATATTTTAACAAC
1 TTATATTAT-ATATTTTAACAAC
711837 TTATATTATATATTTTAA-AA-
1 TTATATTATATATTTTAACAAC
711857 TATATATTATAT
1 T-TATATTATAT
711869 TTTAATTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 1 0.03
21 12 0.40
22 9 0.30
23 8 0.27
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
TTATATTATATATTTTAACAAC
Found at i:714636 original size:22 final size:22
Alignment explanation
Indices: 714608--714650 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
714598 AAAATTACGT
*
714608 TATTTAAATCAATT-TTTTTATA
1 TATTTAAA-AAATTATTTTTATA
714630 TATTTAAAAAATTATTTTTAT
1 TATTTAAAAAATTATTTTTAT
714651 GCATTGATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TATTTAAAAAATTATTTTTATA
Found at i:714674 original size:3 final size:3
Alignment explanation
Indices: 714666--714702 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
714656 GATGTTTAAA
714666 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
714703 GCCTCTGCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:717198 original size:20 final size:21
Alignment explanation
Indices: 717168--717214 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
717158 GACACGTTAT
717168 TTATA-TA-TTTT-TATCATA
1 TTATATTATTTTTATATCATA
717186 TTAATATTATTTTTATATCATA
1 TT-ATATTATTTTTATATCATA
717208 TTATATT
1 TTATATT
717215 TTAAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 2 0.08
19 3 0.12
20 2 0.08
21 9 0.36
22 9 0.36
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (21 bp):
TTATATTATTTTTATATCATA
Found at i:718089 original size:21 final size:22
Alignment explanation
Indices: 718060--718105 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
718050 TAATTTTATT
*
718060 TAAATTTAAT-TTAAAAT-ATA
1 TAAATTTAATATAAAAATAATA
718080 TAAATATTAATATAAAAATAATA
1 TAAAT-TTAATATAAAAATAATA
718103 TAA
1 TAA
718106 TAAATAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 5 0.23
22 6 0.27
23 6 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAATTTAATATAAAAATAATA
Found at i:718110 original size:12 final size:12
Alignment explanation
Indices: 718087--718121 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
718077 ATATAAATAT
718087 TAATATAA-AAA
1 TAATATAATAAA
718098 TAATATAATAAA
1 TAATATAATAAA
*
718110 TAATAAAATAAA
1 TAATATAATAAA
718122 ATTTTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
TAATATAATAAA
Found at i:718110 original size:26 final size:25
Alignment explanation
Indices: 718074--718122 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
718064 TTTAATTTAA
* *
718074 AATATATAAATATTAATATAAAAAT
1 AATATATAAATAATAAAATAAAAAT
718099 AATATAATAAATAATAAAATAAAA
1 AATAT-ATAAATAATAAAATAAAA
718123 TTTTAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (25 bp):
AATATATAAATAATAAAATAAAAAT
Found at i:720800 original size:2 final size:2
Alignment explanation
Indices: 720793--720817 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
720783 GTGTAAGGAA
720793 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
720818 ATGTGATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:723483 original size:31 final size:31
Alignment explanation
Indices: 723448--723511 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
723438 GCTCGATAAA
*
723448 AATTAGAATTTAGCTTAGTTATTGTTGAGTT
1 AATTAAAATTTAGCTTAGTTATTGTTGAGTT
723479 AATTAAAATTTAGCTTAGTTATTGTTGAGTT
1 AATTAAAATTTAGCTTAGTTATTGTTGAGTT
723510 AA
1 AA
723512 GCTCAAACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (31 bp):
AATTAAAATTTAGCTTAGTTATTGTTGAGTT
Found at i:726902 original size:20 final size:19
Alignment explanation
Indices: 726854--726902 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
726844 AAAGTCAATC
726854 ATTTTAATTTATTTTATTAT
1 ATTTT-ATTTATTTTATTAT
*
726874 ACTTTATTTATTTGTATTA-
1 ATTTTATTTATTT-TATTAT
726893 ATTTTGATTT
1 ATTTT-ATTT
726903 GAATCATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (19 bp):
ATTTTATTTATTTTATTAT
Found at i:727629 original size:31 final size:30
Alignment explanation
Indices: 727548--727653 Score: 103
Period size: 31 Copynumber: 3.5 Consensus size: 30
727538 ATAAAATAGA
* * *
727548 ATAAAAATTTTAACATTA-AATATAAACAT
1 ATAAATATTTTAAAATTATAATATAAATAT
727577 AATAAA-ATTAATTAAAA-TATAATATAAATAT
1 -ATAAATATT--TTAAAATTATAATATAAATAT
727608 ATAAATATTTTAAAATTTATAAATATAAAT-T
1 ATAAATATTTTAAAA-TTAT-AATATAAATAT
*
727639 ATTAATATTTTAAAA
1 ATAAATATTTTAAAA
727654 CTAATAAAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
29 9 0.14
30 12 0.18
31 36 0.55
32 9 0.14
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (30 bp):
ATAAATATTTTAAAATTATAATATAAATAT
Found at i:727650 original size:24 final size:24
Alignment explanation
Indices: 727606--727685 Score: 58
Period size: 24 Copynumber: 3.2 Consensus size: 24
727596 TAATATAAAT
* *
727606 ATATAAATATTTTAA-AATTTATAA
1 ATATAAAT-TATTAATATTTTATAA
727630 ATATAAATTATTAATATTTTA-AA
1 ATATAAATTATTAATATTTTATAA
* *
727653 ACTAATAAA-AATAAATATTTTATATTA
1 A-T-ATAAATTATTAATATTTTATA--A
727680 ATATAA
1 ATATAA
727686 TTTAATATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
23 8 0.17
24 25 0.54
25 10 0.22
26 1 0.02
27 2 0.04
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (24 bp):
ATATAAATTATTAATATTTTATAA
Found at i:727661 original size:31 final size:32
Alignment explanation
Indices: 727564--727670 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 32
727554 ATTTTAACAT
*
727564 TAAATATAAACATAATAAA-ATTAATTAAAA-T-A
1 TAAATATAAATAT-ATAAATATT--TTAAAACTAA
* *
727596 T-AATATAAATATATAAATATTTTAAAATTTA
1 TAAATATAAATATATAAATATTTTAAAACTAA
*
727627 TAAATATAAAT-TATTAATATTTTAAAACTAA
1 TAAATATAAATATATAAATATTTTAAAACTAA
*
727658 TAAAAATAAATAT
1 TAAATATAAATAT
727671 TTTATATTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
29 6 0.09
30 6 0.09
31 42 0.65
32 11 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (32 bp):
TAAATATAAATATATAAATATTTTAAAACTAA
Found at i:728002 original size:19 final size:19
Alignment explanation
Indices: 727974--728016 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
727964 TATTATCATC
727974 TTAT-TTATATTTAATAAA
1 TTATATTATATTTAATAAA
* *
727992 TTATATTATATTTATTAAT
1 TTATATTATATTTAATAAA
728011 TTATAT
1 TTATAT
728017 GTTAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTATATTATATTTAATAAA
Found at i:728033 original size:33 final size:35
Alignment explanation
Indices: 727946--728033 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 35
727936 TATATTAAAA
*
727946 ATTTAAATATTAATATTATATTATCATCTTATTTAT
1 ATTT-AATATTAATATTATATTATCATCTAATTTAT
727982 ATTTAATAAATT-ATATTATATT-T-AT-TAATTTAT
1 ATTTAAT--ATTAATATTATATTATCATCTAATTTAT
*
728015 ATGTTAATATTAAAATTAT
1 AT-TTAATATTAATATTAT
728034 TATATTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
32 3 0.07
33 15 0.33
34 7 0.15
35 4 0.09
36 14 0.30
37 3 0.07
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (35 bp):
ATTTAATATTAATATTATATTATCATCTAATTTAT
Found at i:728243 original size:21 final size:22
Alignment explanation
Indices: 728219--728268 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
728209 ATTAAAATAA
728219 ATTTTTAATTAA-A-AATAAAAT
1 ATTTTTAA-TAATATAATAAAAT
*
728240 ATTTTTAATAATATTATAAAAT
1 ATTTTTAATAATATAATAAAAT
728262 ATTTTTA
1 ATTTTTA
728269 TTTTTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 3 0.12
21 9 0.35
22 14 0.54
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTTTAATAATATAATAAAAT
Found at i:731166 original size:17 final size:17
Alignment explanation
Indices: 731144--731177 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
731134 CTTACATTTC
731144 AAATTCAAGTAACATAA
1 AAATTCAAGTAACATAA
* *
731161 AAATTCGAGTAATATAA
1 AAATTCAAGTAACATAA
731178 GTATAAAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (17 bp):
AAATTCAAGTAACATAA
Found at i:732857 original size:21 final size:20
Alignment explanation
Indices: 732829--732867 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
732819 TGCTTTTGTA
732829 TCTAAATGTATCGATACATT
1 TCTAAATGTATCGATACATT
732849 TCTAGAATGTATCGATACA
1 TCTA-AATGTATCGATACA
732868 AGGTCCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
TCTAAATGTATCGATACATT
Found at i:737666 original size:19 final size:19
Alignment explanation
Indices: 737642--737678 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
737632 TATACAAATT
737642 TAATTTAACTTTTTTTAAG
1 TAATTTAACTTTTTTTAAG
*
737661 TAATTTAATTTTTTTTAA
1 TAATTTAACTTTTTTTAA
737679 AAATCTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TAATTTAACTTTTTTTAAG
Found at i:737687 original size:18 final size:19
Alignment explanation
Indices: 737651--737696 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
737641 TTAATTTAAC
* *
737651 TTTTTTTAAGTAATTTAAT
1 TTTTTTTAAGAAATCTAAT
737670 TTTTTTTAA-AAATCTAAT
1 TTTTTTTAAGAAATCTAAT
737688 TTATTTTTA
1 TT-TTTTTA
737697 TTTATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTTTAAGAAATCTAAT
Found at i:737695 original size:23 final size:23
Alignment explanation
Indices: 737661--737749 Score: 83
Period size: 23 Copynumber: 3.8 Consensus size: 23
737651 TTTTTTTAAG
*
737661 TAATTTAATTTTTTTTA-AAAAT
1 TAATTTATTTTTTTTTATAAAAT
*
737683 CTAATTTATTTTTATTTATAAAAT
1 -TAATTTATTTTTTTTTATAAAAT
* *
737707 TAATTTAATTTATTTTTATGAAAT
1 TAATTT-ATTTTTTTTTATAAAAT
* *
737731 TTATTT-TTATTTTATTATA
1 TAATTTATT-TTTTTTTATA
737750 TATAAATTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
22 2 0.04
23 28 0.52
24 24 0.44
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (23 bp):
TAATTTATTTTTTTTTATAAAAT
Found at i:737717 original size:24 final size:23
Alignment explanation
Indices: 737661--737736 Score: 93
Period size: 24 Copynumber: 3.3 Consensus size: 23
737651 TTTTTTTAAG
737661 TAATTTAATTTTTTTTA-AAAAT
1 TAATTTAATTTTTTTTATAAAAT
737683 CTAATTT-ATTTTTATTTATAAAAT
1 -TAATTTAATTTTT-TTTATAAAAT
*
737707 TAATTTAATTTATTTTTATGAAAT
1 TAATTTAATTT-TTTTTATAAAAT
*
737731 TTATTT
1 TAATTT
737737 TTATTTTATT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.13
23 16 0.34
24 23 0.49
25 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (23 bp):
TAATTTAATTTTTTTTATAAAAT
Found at i:737746 original size:26 final size:26
Alignment explanation
Indices: 737710--737759 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
737700 ATAAAATTAA
*
737710 TTTAATTTATT-TTTATGAAATTTATT
1 TTTAATTTATTATATAT-AAATTTATT
*
737736 TTTATTTTATTATATATAAATTTA
1 TTTAATTTATTATATATAAATTTA
737760 AAATATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTAATTTATTATATATAAATTTATT
Found at i:737755 original size:51 final size:46
Alignment explanation
Indices: 737661--737760 Score: 110
Period size: 51 Copynumber: 2.1 Consensus size: 46
737651 TTTTTTTAAG
*
737661 TAATTTAATTTTTTTTAAAAATCTAATTTATTTTTATTTATAAAAT
1 TAATTTAATTTTTTTTAAAAATCTAATTTATTTTTATATATAAAAT
* * * *
737707 TAATTTAATTTATTTTTATGAAATTTATTTTTATTTTATTATATATAAATT
1 TAATTTAATTT-TTTTTA-AAAATCTA-ATTTA-TTT-TTATATATAAAAT
737758 TAA
1 TAA
737761 AATATTAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
46 11 0.25
47 6 0.14
48 6 0.14
49 4 0.09
50 3 0.07
51 14 0.32
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (46 bp):
TAATTTAATTTTTTTTAAAAATCTAATTTATTTTTATATATAAAAT
Found at i:741398 original size:20 final size:22
Alignment explanation
Indices: 741368--741422 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
741358 AATTAAAAAT
**
741368 AAATCTTAAATTTTTATAAAT-A
1 AAAT-TTAAATTTACATAAATAA
741390 AAA-TTAAA-TTACATAAATAA
1 AAATTTAAATTTACATAAATAA
741410 AAATTTAAATTTA
1 AAATTTAAATTTA
741423 TATCATACCT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 8 0.29
20 9 0.32
21 5 0.18
22 6 0.21
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATTTAAATTTACATAAATAA
Found at i:741420 original size:21 final size:19
Alignment explanation
Indices: 741353--741411 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
741343 ATAATTTTAT
741353 AATTAAATTA-A-AAATAA
1 AATTAAATTACATAAATAA
* **
741370 ATCTTAAATTTTTATAAATAA
1 A-ATTAAA-TTACATAAATAA
741391 AATTAAATTACATAAATAA
1 AATTAAATTACATAAATAA
741410 AA
1 AA
741412 ATTTAAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 1 0.03
18 5 0.15
19 14 0.42
20 6 0.18
21 7 0.21
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
AATTAAATTACATAAATAA
Found at i:741906 original size:24 final size:25
Alignment explanation
Indices: 741879--741943 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 25
741869 TAAATTTATA
741879 TATAATAAAATAAA-AAATAAATTT
1 TATAATAAAATAAATAAATAAATTT
*
741903 TAT-A-AAAATAAATTAAATTAATTT
1 TATAATAAAATAAA-TAAATAAATTT
741927 TATAAATAAAAATAAAT
1 TAT-AAT-AAAATAAAT
741944 TAGATTTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
22 8 0.24
23 1 0.03
24 15 0.44
26 1 0.03
27 1 0.03
28 8 0.24
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
TATAATAAAATAAATAAATAAATTT
Found at i:741950 original size:24 final size:23
Alignment explanation
Indices: 741893--741956 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 23
741883 ATAAAATAAA
*
741893 AAATAAATTTTATAAA-AATAAATT
1 AAATTAATTTTATAAATAA-AAA-T
741917 AAATTAATTTTATAAATAAAAAT
1 AAATTAATTTTATAAATAAAAAT
741940 AAATTAGATTTTA-AAAT
1 AAATTA-ATTTTATAAAT
741957 TTTTTAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
23 11 0.30
24 24 0.65
25 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
AAATTAATTTTATAAATAAAAAT
Found at i:741956 original size:23 final size:21
Alignment explanation
Indices: 741907--741956 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 21
741897 AAATTTTATA
*
741907 AAAATAAATTAAATTAATTTT
1 AAAATAAAATAAATTAATTTT
741928 ATAAATAAAAATAAATTAGATTTT
1 A-AAAT-AAAATAAATTA-ATTTT
741952 AAAAT
1 AAAAT
741957 TTTTTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 1 0.04
22 4 0.16
23 14 0.56
24 6 0.24
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
AAAATAAAATAAATTAATTTT
Found at i:742237 original size:14 final size:14
Alignment explanation
Indices: 742218--742259 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
742208 TATATTCATA
742218 AAAAAATTTATTTT
1 AAAAAATTTATTTT
742232 AAAAAATATT-TTTT
1 AAAAAAT-TTATTTT
742246 AAAAATATTTATTT
1 AAAAA-ATTTATTT
742260 ACAAAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAAAAATTTATTTT
Found at i:742260 original size:14 final size:14
Alignment explanation
Indices: 742216--742266 Score: 59
Period size: 13 Copynumber: 3.5 Consensus size: 14
742206 AATATATTCA
*
742216 TAAAAAAATTTATTT
1 TAAAAATATTTA-TT
742231 TAAAAAATATTT-TT
1 T-AAAAATATTTATT
742245 TAAAAATATTTATT
1 TAAAAATATTTATT
742259 TACAAAAT
1 TA-AAAAT
742267 TAAAAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 10 0.31
14 7 0.22
15 6 0.19
16 9 0.28
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
TAAAAATATTTATT
Found at i:742915 original size:10 final size:10
Alignment explanation
Indices: 742900--742925 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
742890 ATCATCACTT
742900 TTTTCTTTCA
1 TTTTCTTTCA
742910 TTTTCTTTCA
1 TTTTCTTTCA
742920 TTTTCT
1 TTTTCT
742926 CCCTCGAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTCTTTCA
Found at i:749024 original size:19 final size:19
Alignment explanation
Indices: 748980--749035 Score: 71
Period size: 17 Copynumber: 3.0 Consensus size: 19
748970 ATTTATTAAA
*
748980 TATATTATTTTTAA-AATT
1 TATATTATATTTAATAATT
*
748998 T-TAATATATTTAATAATT
1 TATATTATATTTAATAATT
749016 TATATTATATTTATATAATT
1 TATATTATATTTA-ATAATT
749036 AACAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 10 0.31
18 6 0.19
19 10 0.31
20 6 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATATTATATTTAATAATT
Found at i:749346 original size:18 final size:17
Alignment explanation
Indices: 749312--749364 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 17
749302 ATAATAAAAT
749312 AATTTATATTTATATAA
1 AATTTATATTTATATAA
*
749329 AATTTA-ATATAT-TAA
1 AATTTATATTTATATAA
*
749344 TAATTTAT-GTTATA-AA
1 -AATTTATATTTATATAA
749360 AATTT
1 AATTT
749365 TAAAATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 8 0.27
16 16 0.53
17 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
AATTTATATTTATATAA
Found at i:749350 original size:16 final size:18
Alignment explanation
Indices: 749295--749351 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 18
749285 ATATATTCTA
*
749295 TTATATTATAATAAAATAAT
1 TTATA-TAT-ATATAATAAT
*
749315 TTATATTTATATAA-AAT
1 TTATATATATATAATAAT
749332 TTA-ATATAT-TAATAAT
1 TTATATATATATAATAAT
749348 TTAT
1 TTAT
749352 GTTATAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 3 0.09
16 11 0.34
17 6 0.19
18 5 0.16
19 2 0.06
20 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTATATATATATAATAAT
Found at i:749367 original size:32 final size:33
Alignment explanation
Indices: 749309--749372 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
749299 ATTATAATAA
* *
749309 AATAATTTATATTTATATAAAATTTAATATATT
1 AATAATTTATAGTTATATAAAATTTAAAATATT
749342 AATAATTTAT-GTTATA-AAAATTTTAAAATAT
1 AATAATTTATAGTTATATAAAA-TTTAAAATAT
749373 ATATTTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 4 0.14
32 14 0.50
33 10 0.36
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (33 bp):
AATAATTTATAGTTATATAAAATTTAAAATATT
Found at i:749409 original size:18 final size:18
Alignment explanation
Indices: 749369--749412 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
749359 AAATTTTAAA
* *
749369 ATATATAT-TTATATCTT
1 ATATATATATTAAATATT
749386 AT-TATATATTAAATATT
1 ATATATATATTAAATATT
749403 ATATATATAT
1 ATATATATAT
749413 CATATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 5 0.22
17 11 0.48
18 7 0.30
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
ATATATATATTAAATATT
Found at i:749632 original size:20 final size:20
Alignment explanation
Indices: 749609--749715 Score: 84
Period size: 21 Copynumber: 5.3 Consensus size: 20
749599 TTTTTAAATT
749609 TATATAATATAAATTATTAA
1 TATATAATATAAATTATTAA
*
749629 TATATAATATAAAATATTTTAA
1 TATATAATAT-AAAT-TATTAA
749651 -ATATAATTATAAA--A-TAA
1 TATATAA-TATAAATTATTAA
*
749668 TACAT-ATATATAATTA-TAA
1 TATATAATATA-AATTATTAA
749687 TATA-AATACATAAATTATTAAA
1 TATATAAT--ATAAATTATT-AA
749709 TATATAA
1 TATATAA
749716 AATTATACAA
Statistics
Matches: 70, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
16 4 0.06
17 6 0.09
18 3 0.04
19 9 0.13
20 15 0.21
21 17 0.24
22 14 0.20
23 2 0.03
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TATATAATATAAATTATTAA
Found at i:749661 original size:22 final size:23
Alignment explanation
Indices: 749589--749666 Score: 74
Period size: 22 Copynumber: 3.4 Consensus size: 23
749579 ATATTAAAAG
*
749589 TATATAAATATTTTTAAATTTATAT
1 TATATAAATA-TTTTAAATATA-AT
* *
749614 AATATAAAT-TATTAATATATAA-
1 TATATAAATATTTTAA-ATATAAT
749636 TATA-AAATATTTTAAATATAAT
1 TATATAAATATTTTAAATATAAT
749658 TATA-AAATA
1 TATATAAATA
749667 ATACATATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
21 10 0.22
22 17 0.38
23 6 0.13
24 4 0.09
25 8 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TATATAAATATTTTAAATATAAT
Found at i:749674 original size:29 final size:28
Alignment explanation
Indices: 749626--749712 Score: 74
Period size: 27 Copynumber: 3.1 Consensus size: 28
749616 TATAAATTAT
*
749626 TAATATATAATATAA-AATATTTTAAATA
1 TAAT-TATAAAATAATAATATTTTAAATA
* *
749654 TAATTATAAAATAATACATATATATAATTA
1 TAATTATAAAATAATA-ATAT-TTTAAATA
749684 TAA-TAT-AAATACATAA-ATTATTAAATA
1 TAATTATAAAATA-ATAATATT-TTAAATA
749711 TA
1 TA
749713 TAAAATTATA
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 18 0.37
28 11 0.22
29 10 0.20
30 9 0.18
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (28 bp):
TAATTATAAAATAATAATATTTTAAATA
Found at i:749676 original size:22 final size:21
Alignment explanation
Indices: 749609--749677 Score: 68
Period size: 20 Copynumber: 3.3 Consensus size: 21
749599 TTTTTAAATT
* *
749609 TATATAATATAAATTATTA-A
1 TATATAATATAAAATAATACA
* **
749629 TATATAATATAAAATATTTTA
1 TATATAATATAAAATAATACA
*
749650 AATATAATTATAAAATAATACA
1 TATATAA-TATAAAATAATACA
749672 TATATA
1 TATATA
749678 TAATTATAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.43
21 7 0.17
22 16 0.40
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (21 bp):
TATATAATATAAAATAATACA
Found at i:749683 original size:24 final size:25
Alignment explanation
Indices: 749651--749698 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
749641 AATATTTTAA
749651 ATATAATTATAAAAT-AATACATAT
1 ATATAATTATAAAATAAATACATAT
*
749675 ATATAATTATAATATAAATACATA
1 ATATAATTATAAAATAAATACATA
749699 AATTATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (25 bp):
ATATAATTATAAAATAAATACATAT
Found at i:749918 original size:16 final size:17
Alignment explanation
Indices: 749897--749928 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
749887 AATATAAAAA
749897 ATAATA-AAAAATAATT
1 ATAATATAAAAATAATT
749913 ATAATATAAAAATAAT
1 ATAATATAAAAATAAT
749929 ATTTATGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAATATAAAAATAATT
Found at i:749934 original size:20 final size:19
Alignment explanation
Indices: 749902--749943 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
749892 AAAAAATAAT
749902 AAAAAATAATTAT-AATATA
1 AAAAAATAATTATGAAT-TA
*
749921 AAAATAATATTTATGAATTA
1 AAAA-AATAATTATGAATTA
749941 AAA
1 AAA
749944 TTATTTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 13 0.65
21 3 0.15
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAAAATAATTATGAATTA
Found at i:749962 original size:16 final size:17
Alignment explanation
Indices: 749928--749963 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
749918 ATAAAAATAA
*
749928 TATTTATGAATTAAAAT
1 TATTTATAAATTAAAAT
749945 TATTTATAAATT-AAAT
1 TATTTATAAATTAAAAT
749961 TAT
1 TAT
749964 CTTTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATTTATAAATTAAAAT
Found at i:750314 original size:25 final size:24
Alignment explanation
Indices: 750285--750333 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
750275 TAATATAAAT
750285 TATTTTAAATAAAATTTAAAATTTA
1 TATTTTAAATAAAA-TTAAAATTTA
* *
750310 TATTTTAAATTAAATTAAATTTTA
1 TATTTTAAATAAAATTAAAATTTA
750334 ACTAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TATTTTAAATAAAATTAAAATTTA
Found at i:751721 original size:219 final size:218
Alignment explanation
Indices: 751328--751726 Score: 498
Period size: 219 Copynumber: 1.8 Consensus size: 218
751318 TTCTATTTTT
* * * ** * *
751328 CCATTTTGGGTATTGTTTTTAGGATTGGTTTTTTTTTTTTTCATAGTTTAGTTCCAAATTAGTTG
1 CCATTTTGGATATTGTTTTAAGGATGGGTTTTTTTTTTTTGAATAGATTAGTTCCAAATTAGTCG
* ** * *
751393 ATTTATGTTATGTTTGGTTGCTGGGAAATTTTGGGAGAAAAGAGGAATTTTTTTTGATACATGAT
66 ATTTATATTATGTTTGGTTGCTGGGAAATTTTGGGAGAAAAGAGGAA-TTCCTTTAACACATGAT
* * *
751458 CTTTGAGTTTCTTTCATATTTGGGTTTTAAACAATAACCTCAGCTGAATTGAAAATGGGGATTGG
130 CTTTGAGTTTATTTCATATTTGGGTTTTAAACAACAAACTCAGCTGAATTGAAAATGGGGATTGG
751523 TCTTTAATATTCATCTTTTTTTCC
195 TCTTTAATATTCATCTTTTTTTCC
*
751547 CCATTTTGGATATTGTTTTAAGGATGGGTTTTTCCTTCTTTTTGAAT-GATTAGTTCCATATTAG
1 CCATTTTGGATATTGTTTTAAGGATGGGTTTTT--TT-TTTTTGAATAGATTAGTTCCAAATTAG
* * *** *
751611 TCGATTTCTATTTTGTTTGGTTGCTGGGAGAA-TTTGGGAGAAACTTGGAA-TCCTTTAACATAT
63 TCGATTTATATTATGTTTGGTTGCTGGGA-AATTTTGGGAGAAAAGAGGAATTCCTTTAACACAT
* * * *
751674 GGTCTTTGAGTTTATTTCCTATTTGGGTTTTGAGCAACAAACTCAGCTGAATT
127 GATCTTTGAGTTTATTTCATATTTGGGTTTTAAACAACAAACTCAGCTGAATT
751727 TATGAGTAGG
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
219 84 0.56
221 57 0.38
222 9 0.06
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (218 bp):
CCATTTTGGATATTGTTTTAAGGATGGGTTTTTTTTTTTTGAATAGATTAGTTCCAAATTAGTCG
ATTTATATTATGTTTGGTTGCTGGGAAATTTTGGGAGAAAAGAGGAATTCCTTTAACACATGATC
TTTGAGTTTATTTCATATTTGGGTTTTAAACAACAAACTCAGCTGAATTGAAAATGGGGATTGGT
CTTTAATATTCATCTTTTTTTCC
Found at i:754921 original size:83 final size:83
Alignment explanation
Indices: 754818--755064 Score: 467
Period size: 83 Copynumber: 3.0 Consensus size: 83
754808 CATATATCCA
754818 TTTGTCATTCCTATGTTTCATTTGCTATTATGTTAGTATTGACATTGTGTTATGCTCTCTGTTGC
1 TTTGTCATTCCTATGTTTCATTTGCTATTATGTTAGTATTGACATTGTGTTATGCTCTCTGTTGC
754883 TCCAACTTTTCATTTTCT
66 TCCAACTTTTCATTTTCT
*
754901 TTTGTCATTCCTACGTTTCATTTGCTATTATGTTAGTATTGACATTGTGTTATGCTCTCTGTTGC
1 TTTGTCATTCCTATGTTTCATTTGCTATTATGTTAGTATTGACATTGTGTTATGCTCTCTGTTGC
754966 TCCAACTTTTCATTTTCT
66 TCCAACTTTTCATTTTCT
*
754984 TTTGTCATTCCTATGTTTCATTTGCTATTATGTTAGTATTGACATTGTGTTATGCTCTTTGTTGC
1 TTTGTCATTCCTATGTTTCATTTGCTATTATGTTAGTATTGACATTGTGTTATGCTCTCTGTTGC
*
755049 TCTAACTTTTCATTTT
66 TCCAACTTTTCATTTT
755065 TCTTGAAGTA
Statistics
Matches: 160, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 160 1.00
ACGTcount: A:0.16, C:0.17, G:0.13, T:0.53
Consensus pattern (83 bp):
TTTGTCATTCCTATGTTTCATTTGCTATTATGTTAGTATTGACATTGTGTTATGCTCTCTGTTGC
TCCAACTTTTCATTTTCT
Found at i:756655 original size:9 final size:9
Alignment explanation
Indices: 756641--756668 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
756631 TGAAATAACT
756641 GTACTAATC
1 GTACTAATC
756650 GTACTAATC
1 GTACTAATC
756659 GTACTAATC
1 GTACTAATC
756668 G
1 G
756669 AGATAACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (9 bp):
GTACTAATC
Found at i:757718 original size:14 final size:14
Alignment explanation
Indices: 757687--757743 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 14
757677 AAAAATAGTT
* **
757687 TTATATTAATATTT
1 TTATATTTATATAA
757701 TTATATTTATATAA
1 TTATATTTATATAA
*
757715 TTATATTTAAATAA
1 TTATATTTATATAA
*
757729 TT-T-TTTCTATAA
1 TTATATTTATATAA
757741 TTA
1 TTA
757744 AATAGTATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
12 9 0.25
13 1 0.03
14 26 0.72
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
TTATATTTATATAA
Found at i:758181 original size:18 final size:17
Alignment explanation
Indices: 758160--758193 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
758150 AATGGTTTAT
758160 ATATTTATAATTTTTAAA
1 ATATTTA-AATTTTTAAA
*
758178 ATATTTAATTTTTTAA
1 ATATTTAAATTTTTAA
758194 TTTATATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATATTTAAATTTTTAAA
Found at i:758551 original size:61 final size:61
Alignment explanation
Indices: 758446--758569 Score: 212
Period size: 61 Copynumber: 2.0 Consensus size: 61
758436 ATAATGTTTA
*
758446 TATTTGAATCTATTTCAAATTTGTTATGTAGAAGAAATTTGATATTTGAATTAAAAATTAT
1 TATTCGAATCTATTTCAAATTTGTTATGTAGAAGAAATTTGATATTTGAATTAAAAATTAT
* * *
758507 TATTCGAATTTATTTCAAATTTGTTATGTATAATAAATTTGATATTTGAATTAAAAATTAT
1 TATTCGAATCTATTTCAAATTTGTTATGTAGAAGAAATTTGATATTTGAATTAAAAATTAT
758568 TA
1 TA
758570 GGCATAAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.48
Consensus pattern (61 bp):
TATTCGAATCTATTTCAAATTTGTTATGTAGAAGAAATTTGATATTTGAATTAAAAATTAT
Found at i:758720 original size:14 final size:14
Alignment explanation
Indices: 758674--758724 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
758664 CTGTAAATAA
*
758674 TAAATTTATC-ATC
1 TAAATTTATCAATT
*
758687 TAAATTTAGTAATTATT
1 TAAATTTA-TCA--ATT
758704 TAAATTTATCAATT
1 TAAATTTATCAATT
758718 TAAATTT
1 TAAATTT
758725 GTAAAAATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 8 0.26
14 11 0.35
16 2 0.06
17 10 0.32
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (14 bp):
TAAATTTATCAATT
Found at i:759040 original size:95 final size:95
Alignment explanation
Indices: 758937--759130 Score: 361
Period size: 95 Copynumber: 2.0 Consensus size: 95
758927 TCGAACCTGT
*
758937 TTTAATTTGACCTTGAATCATGTTTTTTATAATAATAGTTATATTTTATAATATATTTATAATGA
1 TTTAATTTGACCTTGAATCATGTTTTTTATAATAATAATTATATTTTATAATATATTTATAATGA
759002 TAGTTAAAATTTTATTTTATTAATTACTGA
66 TAGTTAAAATTTTATTTTATTAATTACTGA
*
759032 TTTAATTTGACCTTGAATCATGTTTTTTATAATAATAATTATATTTTATAATATATTTATAGTGA
1 TTTAATTTGACCTTGAATCATGTTTTTTATAATAATAATTATATTTTATAATATATTTATAATGA
*
759097 TAGTTAAAATTTTATTTTATTAATTATTGA
66 TAGTTAAAATTTTATTTTATTAATTACTGA
759127 TTTA
1 TTTA
759131 TTGAAGCATA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.54
Consensus pattern (95 bp):
TTTAATTTGACCTTGAATCATGTTTTTTATAATAATAATTATATTTTATAATATATTTATAATGA
TAGTTAAAATTTTATTTTATTAATTACTGA
Found at i:759179 original size:95 final size:95
Alignment explanation
Indices: 758937--759170 Score: 278
Period size: 95 Copynumber: 2.5 Consensus size: 95
758927 TCGAACCTGT
* * * * **
758937 TTTAATTTGACCTTGAATCATGTTTTTTATAATAATAGTTATATTTTATAATATATTTATAATGA
1 TTTAATTTGACCATGAATCATGTTTTTTAAAATAATAATTAAAAATTATAATATATTTATAATGA
759002 TAGTTAAAATTTTATTTTATTAATTACTGA
66 TAGTTAAAATTTTATTTTATTAATTACTGA
* * * ** *
759032 TTTAATTTGACCTTGAATCATGTTTTTTATAATAATAATTATATTTTATAATATATTTATAGTGA
1 TTTAATTTGACCATGAATCATGTTTTTTAAAATAATAATTAAAAATTATAATATATTTATAATGA
*
759097 TAGTTAAAATTTTATTTTATTAATTATTGA
66 TAGTTAAAATTTTATTTTATTAATTACTGA
* *
759127 TTT-A-TTGAAGCAT-ATATGATGTATTTTTAAAATAAT-ATTAAAAA
1 TTTAATTTG-ACCATGA-ATCATGT-TTTTTAAAATAATAATTAAAAA
759171 AATTTAATAA
Statistics
Matches: 126, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
93 4 0.03
94 15 0.12
95 107 0.85
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (95 bp):
TTTAATTTGACCATGAATCATGTTTTTTAAAATAATAATTAAAAATTATAATATATTTATAATGA
TAGTTAAAATTTTATTTTATTAATTACTGA
Found at i:759206 original size:17 final size:18
Alignment explanation
Indices: 759174--759225 Score: 63
Period size: 17 Copynumber: 3.0 Consensus size: 18
759164 TTAAAAAAAT
*
759174 TTAATAAAAATTATTAAA
1 TTAATAAAAATAATTAAA
759192 TTAATAAAAA-AATTAAA
1 TTAATAAAAATAATTAAA
* *
759209 TTAA-AAATATATTTAAA
1 TTAATAAAAATAATTAAA
759226 ATAAATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 4 0.13
17 16 0.53
18 10 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TTAATAAAAATAATTAAA
Found at i:759229 original size:31 final size:30
Alignment explanation
Indices: 759160--759230 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
759150 TTTTTAAAAT
* *
759160 AATATTAAAAAAATTTAATAAAAATTATTA
1 AATAATAAAAAAATTAAATAAAAATTATTA
*
759190 AATTAATAAAAAAATTAAATTAAAAATATATTT
1 AA-TAATAAAAAAATTAAA-TAAAAAT-TATTA
759223 AA-AATAAA
1 AATAATAAA
759231 TAATATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 2 0.06
31 20 0.57
32 7 0.20
33 6 0.17
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (30 bp):
AATAATAAAAAAATTAAATAAAAATTATTA
Found at i:759230 original size:17 final size:17
Alignment explanation
Indices: 759176--759245 Score: 67
Period size: 18 Copynumber: 4.2 Consensus size: 17
759166 AAAAAAATTT
*
759176 AATAAAAAT-TATTAAA
1 AATAAAAATATATTTAA
759192 TTAATAAAAA-A-A-TTAA
1 --AATAAAAATATATTTAA
*
759208 ATTAAAAATATATTTAA
1 AATAAAAATATATTTAA
759225 AATAAATAATATATTTAA
1 AATAAA-AATATATTTAA
759243 AAT
1 AAT
759246 TAAATAAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
14 7 0.16
15 1 0.02
16 4 0.09
17 10 0.23
18 22 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AATAAAAATATATTTAA
Found at i:759235 original size:18 final size:18
Alignment explanation
Indices: 759204--759256 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
759194 AATAAAAAAA
*
759204 TTAAATTAAA-AATATAT
1 TTAAAATAAATAATATAT
759221 TTAAAATAAATAATATAT
1 TTAAAATAAATAATATAT
759239 TTAAAATTAAATAA-ATAT
1 TTAAAA-TAAATAATATAT
759257 AAAAAAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 9 0.27
18 17 0.52
19 7 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAAAATAAATAATATAT
Done.