genome.fa.s813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold813
Parameters: 2 7 7 80 10 50 1000
Length:  28457

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2839--2969	52	2.5	52	93	0	217	31	16	17	35	1.92
3044--3070	13	2.1	13	100	0	54	33	14	14	37	1.88
3880--4006	67	1.9	68	86	1	184	39	12	24	23	1.89
4019--4638	49	12.7	49	82	7	739	31	17	25	26	1.97
4019--4638	98	6.4	98	91	3	954	31	17	25	26	1.97
4010--4643	147	4.3	147	85	4	838	31	17	25	25	1.97
4631--4762	33	4.1	31	85	7	176	17	17	36	28	1.93
4638--4768	66	2.0	67	88	5	196	17	16	35	29	1.92
4777--6026	34	38.8	33	75	13	821	31	12	34	21	1.91
4883--5065	27	6.0	27	72	20	123	27	14	37	21	1.92
4844--6026	62	18.4	61	75	15	606	30	12	35	21	1.91
4790--5848	294	3.5	294	77	15	819	31	12	34	21	1.91
5308--5875	27	18.0	27	69	23	191	30	12	35	21	1.91
4777--6027	485	2.6	484	90	4	1957	31	12	34	21	1.91
5311--5478	89	1.9	87	92	2	282	25	14	38	21	1.92
5912--6026	27	4.0	27	78	14	131	28	13	35	21	1.92
5753--6022	61	4.4	59	78	15	289	31	12	35	20	1.90
9231--9286	19	2.9	19	91	2	85	35	16	17	30	1.92
9252--9316	33	2.0	32	87	3	94	44	15	13	26	1.84
10322--10359	20	1.9	20	88	0	58	39	13	21	26	1.89
20027--20067	2	21.0	2	85	5	57	0	2	51	46	1.14
21229--21276	12	4.5	11	73	26	50	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21435--21492	15	4.0	15	77	20	52	70	0	0	29	0.87
21437--21515	16	4.7	15	72	25	52	69	0	0	30	0.89
21502--21550	20	2.5	20	80	6	55	59	0	4	36	1.17
23531--23595	29	2.2	29	91	0	103	53	9	6	30	1.57
23589--23651	29	2.2	29	82	5	74	53	12	11	22	1.69
23602--23752	58	2.6	57	76	7	151	50	11	9	27	1.71
23620--23759	58	2.4	58	82	3	167	51	11	9	27	1.68
28000--28024	13	1.9	13	100	0	50	36	16	16	32	1.90
28069--28120	13	3.5	13	73	26	50	36	17	13	32	1.89
28077--28141	19	3.7	19	75	23	79	38	16	12	32	1.86
28069--28139	32	2.2	32	97	0	133	36	18	12	32	1.88

Tables:   1

The End!