Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold817
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12664
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Found at i:710 original size:21 final size:21
Alignment explanation
Indices: 681--725 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
671 AAGTTTTTAT
*
681 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
701 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
723 TTT
1 TTT
726 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:725 original size:22 final size:21
Alignment explanation
Indices: 670--725 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
660 ATGAATCATG
670 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
691 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
712 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
726 CAACTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:2969 original size:13 final size:13
Alignment explanation
Indices: 2951--2976 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2941 AATTTTTTTG
2951 TGTATCGATACAT
1 TGTATCGATACAT
2964 TGTATCGATACAT
1 TGTATCGATACAT
2977 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5602 original size:386 final size:386
Alignment explanation
Indices: 4889--6036 Score: 2237
Period size: 386 Copynumber: 3.0 Consensus size: 386
4879 AGTCAATGGG
4889 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
1 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
4954 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
66 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
5019 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
131 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
5084 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
196 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
*
5149 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGATGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
261 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
5214 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
326 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
5275 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
1 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
5340 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
66 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
5405 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
131 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
5470 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
196 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
5535 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
261 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
5600 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
326 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
5661 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
1 TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
5726 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
66 CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
5791 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGT-AAAAAC
131 CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
5855 CTAAAACGATTTTTCTAAACTTTTTTGAT-TTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
196 CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
*
5919 CGATGTCCTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
261 CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
* * *
5984 TCAAAAACTATGGAATCAATAAAATACATTCTAGTTGGGCCGTTCAAGCCAAC
326 TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAAC
6037 CATGATATTT
Statistics
Matches: 757, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
384 149 0.20
385 35 0.05
386 573 0.76
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (386 bp):
TTGTTCCATCATCTTAAACTACTCCAGGATTGTGGAATGAACACGTGATGCCTTTGTCACCTCCC
CTTTTCAATTATGGATGTTCGAATGTCAGTAGCACGAGTTCAACCTAATGGAAAAACCAAAAACA
CTAAACACCTCCTCTGTTTTGGTTTGGCAGTATTGAAGTATGAATTTTAAAATTATGTAAAAAAC
CTAAAACGATTTTTCTAAACTTTTTTGATATTTTTTCCTTAAATATCTTCGAATTACCTTTTCAA
CGATGTCTTGTTTGCCCCCGGATTTGTCCAGACGAGGGAGTTACGATTTTTTGAATCTAAGCTGT
TCAAAAACCATGGAATCAGTAAAATACGTTCTAGTTGGGCCGTTCAAGCCAACAAGATGAT
Found at i:6703 original size:79 final size:79
Alignment explanation
Indices: 6563--6848 Score: 328
Period size: 79 Copynumber: 3.6 Consensus size: 79
6553 TCATTAATGT
* * * *
6563 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCCCGTTATTTCCGAGGGGA
* *
6628 TACTTCAACCTCGG
66 TACTCCAACCTCGA
* * **
6642 TTTCATTTCTAAAATACCAATTTTTCACCATCAAGGATACTTCAACCCTC-TTATTTCCGAGGGG
1 TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCC-CGTTATTTCCGAGGGG
6706 ATACTCCAA-CTCCGA
65 ATACTCCAACCT-CGA
* * *
6721 TTTTATTTCTAAAATACCGA-TTTTCTATCATCGGGGACA-TTCAAACCCCGTTATTTCTGAGGG
1 TTTTATTTCTAAAATACCGATTTTTC-ACCATCGGGGATACTTC-AACCCCGTTATTTCCGAGGG
* *
6784 GATACTCCAACCCCAA
64 GATACTCCAACCTCGA
** * * *
6800 TTTTATTTCTAAAATATTGATTTTCCACCATCGGAGATACTCCAACCCC
1 TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCCC
6849 AATTTTATTT
Statistics
Matches: 173, Mismatches: 26, Indels: 16
0.80 0.12 0.07
Matches are distributed among these distances:
78 11 0.06
79 154 0.89
80 8 0.05
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (79 bp):
TTTTATTTCTAAAATACCGATTTTTCACCATCGGGGATACTTCAACCCCGTTATTTCCGAGGGGA
TACTCCAACCTCGA
Found at i:6860 original size:51 final size:51
Alignment explanation
Indices: 6782--6897 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
6772 TATTTCTGAG
* ***
6782 GGGATACTCCAACCCCAATTTTATTTCTAAAATATTGATTTTCCACCATC-
1 GGGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
6832 GGAGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
1 GG-GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
*
6884 GGGATATTCCAACC
1 GGGATACTCCAACC
6898 TCGTTATTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
50 2 0.03
51 55 0.93
52 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (51 bp):
GGGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCA
Found at i:6860 original size:130 final size:130
Alignment explanation
Indices: 6705--6977 Score: 366
Period size: 130 Copynumber: 2.1 Consensus size: 130
6695 TTTCCGAGGG
* * * * * * *
6705 GATACTCCAACTCCGATTTTATTTCTAAAATACCGATTTTCTATCATCGGGGACATTCAAACCCC
1 GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGACATTCAAACCCC
* * * * *
6770 GTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATATTGATTTTCCACCATCGGA
66 GTTATTTCTGAGGAGATACTCCAACCCCAATTTTATATCTAAAACACTAATTTTCCACCATCGGA
* * *
6835 GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGATATTCCAACCTC
1 GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGACATTCAAACCCC
* * ** *
6900 GTTATTTCTGAGGAGATATTCTAACCCTGATTTTATATCTAAAACACTAATTTTTCACCATCGGA
66 GTTATTTCTGAGGAGATACTCCAACCCCAATTTTATATCTAAAACACTAATTTTCCACCATCGGA
6965 GATACTCCAACCC
1 GATACTCCAACCC
6978 TGTTATTTCC
Statistics
Matches: 123, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
130 123 1.00
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (130 bp):
GATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGACATTCAAACCCC
GTTATTTCTGAGGAGATACTCCAACCCCAATTTTATATCTAAAACACTAATTTTCCACCATCGGA
Found at i:7040 original size:209 final size:209
Alignment explanation
Indices: 6646--7040 Score: 447
Period size: 209 Copynumber: 1.9 Consensus size: 209
6636 CCTCGGTTTC
* * *
6646 ATTTCTAAAATACCAATTTTTCACCATCAAGGATACTTCAACCCTCTTATTTCCGAGGGGATACT
1 ATTTCTAAAACACCAATTTTCCACCATCAAGGATACTTCAACCCTCTTATTTCCGAGGAGATACT
* * * * * *
6711 CCAACTCCGATTTTATTTCTAAAATACCGATTTTCTATCATCGGGGACATTCAAACCCCGTTATT
66 CCAACTCCGATTTTATATCTAAAACACCAATTTTCTACCATCGGAGACACTCAAACCCCGTTATT
* * * ***
6776 TCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATATTGATTTTCCACCATCGGAGATACT
131 TCCGAGGGAATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTCCACCATCGGAGATACT
6841 CCAACCCCAATTTT
196 CCAACCCCAATTTT
* * *
6855 ATTTCTAAAACACCCATTTTCCACCATCAGGGATA-TTCCAA-CCTCGTTATTTCTGAGGAGATA
1 ATTTCTAAAACACCAATTTTCCACCATCAAGGATACTT-CAACCCTC-TTATTTCCGAGGAGATA
* * * * * *
6918 TTCTAAC-CCTGATTTTATATCTAAAACACTAATTTT-TCACCATCGGAGATACTCCAACCCTGT
64 CTCCAACTCC-GATTTTATATCTAAAACACCAATTTTCT-ACCATCGGAGACACTCAAACCCCGT
* ** ** * *
6981 TATTTCCGAGGGAATACTCTAACTTCGGTTTTATTTTTAAAACACCAATTTTTCACCATC
127 TATTTCCGAGGGAATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTCCACCATC
7041 AAGGATACTC
Statistics
Matches: 151, Mismatches: 31, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
208 9 0.06
209 142 0.94
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (209 bp):
ATTTCTAAAACACCAATTTTCCACCATCAAGGATACTTCAACCCTCTTATTTCCGAGGAGATACT
CCAACTCCGATTTTATATCTAAAACACCAATTTTCTACCATCGGAGACACTCAAACCCCGTTATT
TCCGAGGGAATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTCCACCATCGGAGATACT
CCAACCCCAATTTT
Found at i:7072 original size:79 final size:80
Alignment explanation
Indices: 6832--7073 Score: 269
Period size: 79 Copynumber: 3.0 Consensus size: 80
6822 TTCCACCATC
* ** * * *
6832 GGAGATACTCCAACCCCAATTTTATTTCTAAAACACCCATTTTCCACCATCAGGGATATTCCAAC
1 GGAGATACTCTAACCCTGATTTTATTTCTAAAACACCAATTTTTCACCATCAGGGATACTCCAAC
6897 CTCGTTATTTCTGA-
66 CTCGTTATTTCTGAG
* * *
6911 GGAGATATTCTAACCCTGATTTTATATCTAAAACACTAATTTTTCACCATC-GGAGATACTCCAA
1 GGAGATACTCTAACCCTGATTTTATTTCTAAAACACCAATTTTTCACCATCAGG-GATACTCCAA
*
6975 CC-CTGTTATTTCCGAG
65 CCTC-GTTATTTCTGAG
* * * * *
6991 GGA-ATACTCTAA-CTTCGGTTTTATTTTTAAAACACCAATTTTTCACCATCAAGGATACTCTAA
1 GGAGATACTCTAACCCT-GATTTTATTTCTAAAACACCAATTTTTCACCATCAGGGATACTCCAA
* *
7054 CCTCGTTAATTCTAAG
65 CCTCGTTATTTCTGAG
7070 GGAG
1 GGAG
7074 TACCGTTATT
Statistics
Matches: 135, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
78 5 0.04
79 125 0.93
80 5 0.04
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (80 bp):
GGAGATACTCTAACCCTGATTTTATTTCTAAAACACCAATTTTTCACCATCAGGGATACTCCAAC
CTCGTTATTTCTGAG
Found at i:8964 original size:15 final size:15
Alignment explanation
Indices: 8944--8974 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8934 TCTCCAGCGA
8944 GGTATGAAAGAGAAT
1 GGTATGAAAGAGAAT
8959 GGTATGAAAGAGAAT
1 GGTATGAAAGAGAAT
8974 G
1 G
8975 ATAAGAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.35, T:0.19
Consensus pattern (15 bp):
GGTATGAAAGAGAAT
Found at i:8982 original size:15 final size:15
Alignment explanation
Indices: 8949--8982 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8939 AGCGAGGTAT
* *
8949 GAAAGAGAATGGTAT
1 GAAAGAGAATGATAA
8964 GAAAGAGAATGATAA
1 GAAAGAGAATGATAA
8979 GAAA
1 GAAA
8983 CTTTTGTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.15
Consensus pattern (15 bp):
GAAAGAGAATGATAA
Found at i:12114 original size:22 final size:22
Alignment explanation
Indices: 12086--12153 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
12076 AAAAAAAAAT
*
12086 ATGTACAGATAGCTATAATTGA
1 ATGTACATATAGCTATAATTGA
* *
12108 ATGTACATAT-GACTATAATAGT
1 ATGTACATATAG-CTATAATTGA
* *
12130 ATGTATATATAGCTTTAATTGA
1 ATGTACATATAGCTATAATTGA
12152 AT
1 AT
12154 CAACTTTACA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGTACATATAGCTATAATTGA
Found at i:12272 original size:51 final size:52
Alignment explanation
Indices: 12211--12664 Score: 391
Period size: 52 Copynumber: 8.8 Consensus size: 52
12201 TAAAATATAT
* *
12211 TTATTTTTAAATAGTATTTCGAGATTTACT-TAAAATATTTTTTAATTTTTA
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATTTTTTAATTTTTA
* * * * *
12262 TTATTTTTAAATAGTCATTCGAGAATTAATGTAAAATATATTTTATTTTTTA
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATTTTTTAATTTTTA
* * *
12314 TTATTTTATAAAAAGTAATTTGAGATTT-ATATAAAATGTTTTTTAATTTTTA
1 TTATTTT-TAAATAGTAATTCGAGATTTAATATAAAATATTTTTTAATTTTTA
* * *
12366 TTATTTTTAAATAGTAAATCAAGATTTAATGTAAAATA-----TACA-TTTTA
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATTTTTTA-ATTTTTA
* * * * * *
12413 TT-TTTATTAAATAATAATT-TATGATTTAGA-ATGAAATA-GTTTAAACTTTTA
1 TTATTT-TTAAATAGTAATTCGA-GATTTA-ATATAAAATATTTTTTAATTTTTA
* * * * *
12464 TTTTTTTTAAATAGTAAATCAACATTTAATATAAAATATATATTTTAAATTTT-
1 TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATAT-T-TTTTAATTTTTA
*
12517 TTACTATTTTAAATAGTCACTT-GAGATTTAATAT-AAATATTTTTTGAATTTTTA
1 TTA-T-TTTTAAATAGT-AATTCGAGATTTAATATAAAATATTTTTT-AATTTTTA
* * *
12571 TTATTTTTAAATAATAATTC-AGGATTTATTATAAAATATTTTTAAATTTTTTA
1 TTATTTTTAAATAGTAATTCGA-GATTTAATATAAAATATTTTTTAA-TTTTTA
* * *
12624 TTATTTTTTAAATAGTAATTCGATATTTAATCTAAAGTATT
1 TTA-TTTTTAAATAGTAATTCGAGATTTAATATAAAATATT
Statistics
Matches: 325, Mismatches: 49, Indels: 55
0.76 0.11 0.13
Matches are distributed among these distances:
46 4 0.01
47 32 0.10
48 2 0.01
50 2 0.01
51 77 0.24
52 90 0.28
53 45 0.14
54 49 0.15
55 22 0.07
56 2 0.01
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (52 bp):
TTATTTTTAAATAGTAATTCGAGATTTAATATAAAATATTTTTTAATTTTTA
Found at i:12423 original size:47 final size:46
Alignment explanation
Indices: 12361--12519 Score: 140
Period size: 47 Copynumber: 3.3 Consensus size: 46
12351 GTTTTTTAAT
*
12361 TTTTATTATTTTTAAATAGTAAATCAAGATTTAATGTAAAATATACA
1 TTTTATT-TTTTTAAATAGTAAATCAAGATTTAATGTAAAATATAAA
* * * * *
12408 TTTTATTTTTATTAAATAATAATTTATGATTTAGAATG-AAATAGTTTAAA
1 TTTTATTTTT-TTAAATAGTAAATCAAGATTT--AATGTAAA-A-TATAAA
* * *
12458 CTTTTATTTTTTTTAAATAGTAAATCAACATTTAATATAAAATATATA
1 -TTTTA-TTTTTTTAAATAGTAAATCAAGATTTAATGTAAAATATAAA
*
12506 TTTTAAATTTTTTA
1 TTTT-ATTTTTTTA
12520 CTATTTTAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
46 3 0.03
47 35 0.40
48 8 0.09
49 9 0.10
50 7 0.08
51 21 0.24
52 5 0.06
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (46 bp):
TTTTATTTTTTTAAATAGTAAATCAAGATTTAATGTAAAATATAAA
Done.