genome.fa.s819.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold819
Parameters: 2 7 7 80 10 50 1000
Length:  72985

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1374--1416	17	2.6	16	82	17	52	46	2	2	48	1.27
10668--10698	13	2.4	13	94	0	53	35	12	16	35	1.87
10646--10714	33	2.1	33	86	5	95	36	17	13	33	1.88
11385--11426	22	1.9	22	90	0	66	28	28	0	42	1.56
16032--16080	13	4.2	13	75	24	63	32	12	18	36	1.88
16011--16080	33	2.1	34	89	7	108	32	12	20	34	1.90
20150--20278	52	2.5	52	96	0	240	27	17	19	36	1.94
20150--20298	52	2.9	52	89	6	230	28	16	19	34	1.94
20287--20311	13	1.9	13	100	0	50	36	16	16	32	1.90
20354--20447	19	5.6	18	68	28	73	34	17	13	35	1.89
20373--20429	13	3.9	13	72	24	51	31	17	15	35	1.92
20352--20447	32	3.0	32	93	1	165	34	16	13	35	1.88
21351--21375	3	8.3	3	100	0	50	32	0	36	32	1.58
28547--28611	34	2.0	32	87	6	94	35	13	16	33	1.89
33067--33122	21	2.7	20	81	10	67	35	19	14	30	1.91
35390--35450	10	5.6	11	75	16	56	67	4	27	0	1.11
40572--40613	12	3.6	11	81	12	57	85	0	14	0	0.59
40572--40613	11	3.7	12	84	9	61	85	0	14	0	0.59
48061--48184	52	2.4	51	93	4	205	29	17	18	34	1.94
48061--48204	52	2.8	50	84	13	177	30	17	18	33	1.94
48193--48217	13	1.9	13	100	0	50	36	16	16	32	1.90
48258--48324	33	2.0	33	88	0	98	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48280--48304	13	1.9	13	100	0	50	32	16	16	36	1.90
49494--51535	27	75.0	27	84	1	2292	24	30	14	30	1.95
49494--51795	54	42.1	54	83	4	2297	24	30	14	30	1.95
49472--51538	109	19.0	108	84	3	2179	24	30	14	30	1.95
49485--51836	27	85.9	29	79	10	424	24	30	14	30	1.95
51514--51824	117	2.7	117	81	7	329	28	28	16	25	1.97
51803--51969	32	5.2	31	81	9	185	29	38	16	15	1.89
51803--51969	64	2.6	64	87	11	243	29	38	16	15	1.89
51826--51969	64	2.2	64	95	0	261	31	38	15	14	1.88
58387--58474	38	2.3	39	80	7	92	31	22	5	39	1.78
58475--58518	21	2.1	21	83	8	54	27	31	2	38	1.69
60328--60364	13	2.8	13	95	0	65	43	16	10	29	1.82
64277--64321	21	2.1	21	84	8	56	22	20	4	53	1.63
66539--66564	13	2.0	13	100	0	52	30	15	15	38	1.88
71103--71128	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!