Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold820
Parameters: 2 7 7 80 10 50 1000
Length:  60947

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91--126
16
2.1
18
90
10
58
41
0
0
58
0.98
2318--2366
24
2.0
24
96
0
89
40
16
22
20
1.91
6983--7022
2
20.0
2
100
0
80
50
0
0
50
1.00
7003--8187
444
2.6
445
80
7
1342
43
6
9
40
1.62
8412--8457
24
1.9
24
86
0
65
60
2
0
36
1.09
9468--9513
23
2.0
24
83
12
60
43
2
0
54
1.12
11749--11773
13
1.9
13
100
0
50
32
16
16
36
1.90
11823--11874
19
2.7
20
84
3
70
34
17
15
32
1.91
12091--12138
20
2.4
19
80
16
53
31
2
2
64
1.16
18143--18167
2
12.5
2
100
0
50
52
0
0
48
1.00
22763--22813
20
2.5
20
90
0
75
43
5
17
33
1.73
22927--22968
20
2.1
20
90
0
66
28
16
11
42
1.84
25261--25400
58
2.4
58
79
6
160
33
7
8
50
1.62
25602--25728
58
2.2
58
78
10
143
24
12
11
51
1.71
32994--33033
16
2.5
16
83
0
53
57
12
2
27
1.48
33908--33936
14
2.1
14
100
0
58
31
27
20
20
1.98
45041--45279
97
2.5
97
90
0
370
29
12
29
29
1.93
47283--47392
34
3.2
34
80
5
105
12
27
20
39
1.89
51650--51688
20
2.0
20
85
10
53
35
5
20
38
1.75
54176--54322
50
3.0
50
82
7
142
33
10
17
38
1.85
54226--54271
21
2.1
23
88
8
69
28
4
19
47
1.68
54208--54319
49
2.2
51
87
4
165
32
8
18
40
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54732--54787
22
2.5
23
91
5
96
30
14
8
46
1.75
54915--54939
13
1.9
13
100
0
50
24
16
20
40
1.91
58770--59084
114
2.8
114
79
3
323
42
10
9
38
1.71

Tables:   1

The End!