genome.fa.s821.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold821
Parameters: 2 7 7 80 10 50 1000
Length:  30738

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3654--3719	26	2.4	27	83	14	75	46	6	3	43	1.43
9597--9643	24	2.0	24	83	8	60	46	0	2	51	1.13
10649--10804	83	1.9	84	83	5	208	32	5	14	46	1.68
14123--14199	22	3.5	22	67	22	72	27	20	9	42	1.82
14097--14220	43	2.9	43	90	2	187	28	19	8	44	1.79
14208--14298	5	18.2	5	85	4	85	20	21	8	48	1.77
14208--14296	10	8.9	10	83	0	97	21	21	7	49	1.74
14208--14298	20	4.6	20	88	0	137	20	21	8	48	1.77
14613--14653	20	2.1	19	86	4	55	24	41	12	21	1.87
18842--18966	52	2.4	52	98	0	241	27	18	19	35	1.95
19035--19097	19	3.6	19	72	24	66	38	17	12	31	1.87
19052--19076	13	1.9	13	100	0	50	32	16	16	36	1.90
19035--19095	32	1.9	32	93	0	104	36	18	13	32	1.89
23728--23824	30	3.4	28	76	21	80	52	0	1	46	1.07
23728--23824	29	3.4	28	76	17	76	52	0	1	46	1.07
24169--24236	27	2.5	27	85	0	91	45	19	10	25	1.81
24224--24281	26	2.3	25	88	5	82	25	13	25	34	1.93
26145--26190	21	2.1	22	88	4	67	19	28	19	32	1.96
28643--28688	20	2.3	20	84	0	56	36	4	47	10	1.58
28735--28804	24	2.8	24	72	14	61	45	20	10	24	1.81
28737--28831	27	3.6	27	78	4	88	45	21	9	24	1.81
28781--28835	27	2.0	27	92	0	92	45	21	10	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29143--29242	34	3.1	32	79	9	114	55	3	8	34	1.45
29623--29665	22	2.0	22	90	0	68	46	6	2	44	1.43

Tables:   1

The End!