genome.fa.s827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold827
Parameters: 2 7 7 80 10 50 1000
Length:  66965

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1132--1304	50	3.4	51	79	9	183	30	11	26	31	1.92
1187--1351	50	3.2	48	80	11	161	33	12	24	29	1.92
3775--3829	20	2.8	20	82	0	74	45	16	14	23	1.84
3849--3916	19	3.9	18	76	23	83	38	14	11	35	1.83
3871--3895	13	1.9	13	100	0	50	32	16	16	36	1.90
3852--3914	32	2.0	32	96	0	117	36	15	12	34	1.86
3953--4010	21	2.7	22	81	7	75	32	15	15	36	1.89
8118--8147	13	2.3	13	94	0	51	36	10	16	36	1.82
8095--8163	33	2.1	33	86	0	93	33	18	13	34	1.90
8192--8247	19	2.9	19	86	2	76	35	14	19	30	1.91
8575--9869	155	8.3	155	79	8	1131	37	21	18	22	1.94
8577--9869	311	4.2	310	78	7	1205	38	21	18	22	1.94
11284--11321	20	1.9	20	88	0	58	2	21	0	76	0.91
11414--11455	22	1.9	22	85	0	57	7	21	21	50	1.72
11643--11708	21	3.4	20	75	17	59	1	22	9	66	1.28
12829--12859	14	2.2	14	100	0	62	0	6	12	80	0.89
13015--13050	14	2.7	13	86	4	54	66	0	2	30	1.06
14411--14569	83	1.9	83	84	3	212	44	15	22	18	1.87
14434--14610	83	2.1	83	82	2	203	42	14	23	19	1.88
14752--15062	84	3.7	83	85	5	398	35	16	29	19	1.93
14729--15062	168	2.0	165	86	6	460	35	15	29	20	1.93
15185--17360	85	25.7	84	73	9	751	32	17	28	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15276--17365	128	16.4	128	73	9	642	32	17	28	20	1.96
15793--16197	171	2.4	170	79	7	444	32	19	28	20	1.96
16007--16936	171	5.5	168	71	11	421	32	17	28	21	1.96
15304--17359	43	48.5	43	72	8	511	32	17	28	20	1.96
16619--16879	125	2.1	128	81	6	309	33	21	28	16	1.95
16981--17365	42	9.0	41	74	7	178	31	15	29	23	1.95
17298--17426	67	1.9	67	84	6	172	31	16	28	23	1.96
17370--17480	43	2.6	43	78	12	113	32	16	30	20	1.95
18138--18338	89	2.2	89	85	0	276	30	14	28	25	1.95
20133--20185	16	3.2	16	82	17	65	1	5	7	84	0.82
20615--20639	13	1.9	13	100	0	50	32	16	16	36	1.90
23100--23179	27	3.0	27	85	7	92	26	32	16	25	1.96
22996--23333	52	6.5	52	71	12	210	29	26	11	31	1.92
23316--23392	28	2.8	28	85	0	100	23	32	19	24	1.97
22993--23441	211	2.1	209	85	3	598	28	26	12	31	1.93
23375--23473	51	1.9	52	82	10	123	29	25	12	33	1.92
35838--35912	13	5.8	13	77	19	70	84	6	9	0	0.79
35841--35881	11	3.6	11	83	6	55	87	4	7	0	0.65
35840--35899	12	4.9	12	82	10	68	85	6	8	0	0.76
35838--35911	24	3.0	23	75	15	67	83	6	9	0	0.80
35838--35913	39	2.0	36	85	12	100	82	7	9	0	0.83
36879--37619	55	13.3	54	88	5	973	27	29	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37039--37124	27	3.1	27	64	15	68	26	30	18	24	1.98
37357--37444	29	3.1	29	62	15	76	25	36	19	19	1.95
38304--38360	21	2.7	21	97	0	105	33	10	19	36	1.86
38471--38537	33	2.0	33	85	0	89	25	13	16	44	1.84
40882--41004	51	2.3	53	82	6	153	34	22	9	33	1.87
41019--41189	52	3.3	50	80	8	182	29	25	14	30	1.94
46427--47687	156	8.1	155	77	6	948	39	21	16	22	1.92
52341--53263	29	31.7	29	84	6	1174	21	17	33	28	1.96
52341--53263	28	31.6	28	85	6	1126	21	17	33	28	1.96
52341--53255	146	6.3	144	87	5	1184	20	17	33	28	1.96
54488--54553	1	66.0	1	72	0	51	0	1	12	86	0.64
54499--54551	5	10.8	5	81	16	58	0	0	13	86	0.56
54477--54554	24	3.4	22	84	10	86	1	2	12	83	0.82
54477--54554	11	6.7	11	85	8	93	1	2	12	83	0.82
55161--55226	19	3.8	19	77	22	90	33	12	18	36	1.88
55162--55224	32	2.0	32	100	0	126	33	12	19	34	1.89
55181--55205	13	1.9	13	100	0	50	36	16	16	32	1.90
55281--55424	52	2.8	52	93	2	236	29	20	18	31	1.96

Tables:   1

The End!