genome.fa.s829.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold829
Parameters: 2 7 7 80 10 50 1000
Length:  69730

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731--873	38	3.7	38	80	6	130	27	6	20	44	1.77
812--905	39	2.5	37	86	8	127	26	11	17	44	1.82
1844--1901	29	2.0	29	96	0	107	22	20	5	51	1.67
1848--1910	29	2.2	29	85	0	81	26	20	6	46	1.75
13291--13330	2	20.0	2	100	0	80	50	0	0	50	1.00
14901--14942	21	2.0	21	81	9	50	52	0	7	40	1.29
15566--15612	17	2.6	19	77	19	55	44	0	0	55	0.99
16001--16030	13	2.3	13	94	0	51	36	16	13	33	1.88
15986--16048	33	1.9	33	90	6	101	33	12	19	34	1.89
23956--24360	79	5.2	79	83	5	491	31	14	26	26	1.95
23953--24360	155	2.6	156	83	2	543	31	14	27	26	1.95
24296--24472	51	3.5	49	81	7	187	34	11	25	27	1.91
26755--26848	20	4.7	20	86	5	111	43	13	14	27	1.84
26867--26919	18	2.8	19	88	5	72	41	15	15	28	1.87
26900--26930	13	2.4	13	100	0	62	41	16	12	29	1.85
27568--27667	42	2.4	42	83	8	125	44	10	28	18	1.81
27848--28367	60	8.7	60	78	9	503	26	20	27	25	1.99
27843--28347	183	2.8	174	82	6	584	26	20	27	25	1.99
31139--31198	19	3.2	19	86	6	77	33	11	16	38	1.85
31178--31278	43	2.3	43	96	0	184	26	20	19	32	1.97
31265--31329	33	2.0	33	84	6	87	35	10	16	36	1.84
32602--32673	23	3.0	23	78	8	63	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32603--32666	25	2.5	24	80	7	65	60	3	0	35	1.12
32602--32673	24	3.0	23	75	15	65	58	2	0	38	1.13
32654--32728	29	2.5	30	80	6	71	54	2	2	40	1.28
32771--32795	7	3.6	7	100	0	50	76	0	0	24	0.80
33023--33123	48	2.1	48	90	0	157	58	6	1	32	1.36
33672--33715	22	2.0	22	83	12	56	34	0	13	52	1.41
35895--35919	2	12.5	2	100	0	50	48	0	0	52	1.00
36047--36108	29	2.2	29	82	8	74	33	0	3	62	1.11
36137--36172	18	1.9	19	88	5	56	61	2	8	27	1.39
36724--36791	32	2.1	33	91	2	111	39	4	5	50	1.47
37065--37134	29	2.4	29	81	6	72	38	4	2	54	1.35
37561--37621	31	1.9	32	87	9	90	50	0	8	40	1.32
43913--44219	58	5.3	57	79	7	266	25	10	16	48	1.77
44025--44115	29	3.1	29	65	12	78	21	9	18	49	1.77
43971--44214	114	2.1	115	80	8	273	23	10	17	48	1.78
50349--50421	24	3.1	24	74	20	73	31	1	4	63	1.22
57878--58063	52	3.6	53	81	5	220	32	10	25	31	1.90
57878--58099	51	4.3	50	82	7	221	32	11	25	30	1.91
58033--58199	79	2.1	79	89	2	255	31	13	28	26	1.94
58164--58267	32	3.6	28	83	14	124	24	19	31	25	1.98
58166--58231	32	2.1	32	100	0	132	24	18	33	24	1.97
58254--58376	51	2.4	51	83	6	149	31	10	24	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60743--60768	13	2.0	13	100	0	52	38	15	15	30	1.88
60820--60909	19	4.7	19	79	9	103	38	14	12	34	1.83
60836--60890	17	3.2	17	87	7	67	36	12	10	40	1.79
62470--62565	18	5.5	18	66	18	51	13	39	0	46	1.43
62511--62574	21	3.0	21	70	17	60	15	40	0	43	1.47
62463--62583	42	2.9	42	77	4	129	14	38	0	46	1.45
63359--63398	10	4.0	10	84	9	55	10	2	5	82	0.91
66427--66459	3	11.0	3	87	12	50	66	0	0	33	0.92
66427--66459	13	2.8	12	90	9	50	66	0	0	33	0.92

Tables:   1

The End!