Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold83
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1211110
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 9456 characters in sequence are not A, C, G, or T
File 5 of 8
Found at i:730622 original size:34 final size:34
Alignment explanation
Indices: 730502--731030 Score: 473
Period size: 34 Copynumber: 15.9 Consensus size: 34
730492 GCATTTTTTC
*
730502 TTTAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
**
730537 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTCCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTT
730573 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
730608 TTTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTT
*
730645 GTTAAAGCCCACAACTCCGTGGCACC---TTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
730676 TTCAAAGCCCACAACTCCGTGGCACC-----C-T
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * * * *
730704 TTT-AAGTCCACGACTACATGGCA-CTCTTTTC-C
1 TTTAAAGCCCACAACTCCGTGGCACCT-TTTTCTT
730736 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTT
*
730773 GTTAAAGCCCACAACTCCGTGGCACC---TTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
730804 TTCAAAGCCCACAACTCCGTGGCACC-----C-T
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * * *
730832 TTT-AAGTCCACGACTACGTGGCA-CTCTTTTC-C
1 TTTAAAGCCCACAACTCCGTGGCACCT-TTTTCTT
* *
730864 TTTAAAGCCCACAACTACGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
* *
730899 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
* *
730933 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTT-CTT
*
730969 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * *
731003 TTT-AAGTCCACAACTTCGTGGCATCTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT
731031 CACCCTTTCT
Statistics
Matches: 424, Mismatches: 40, Indels: 62
0.81 0.08 0.12
Matches are distributed among these distances:
26 2 0.00
27 33 0.08
28 6 0.01
29 2 0.00
31 54 0.13
32 8 0.02
33 59 0.14
34 91 0.21
35 57 0.13
36 21 0.05
37 91 0.21
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
Found at i:730841 original size:128 final size:128
Alignment explanation
Indices: 730608--730962 Score: 599
Period size: 128 Copynumber: 2.8 Consensus size: 128
730598 CCTTTTTCTT
*
730608 TTTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGGCACCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGGCACCTT
730673 CTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACATGGCACTCTTTTCC
66 CTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACATGGCACTCTTTTCC
730736 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGGCACCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGGCACCTT
*
730801 CTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACGTGGCACTCTTTTCC
66 CTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACATGGCACTCTTTTCC
* *
730864 TTTAAAGCCCACAACTACGTGGCACTCTTTTT-CCTT-CT-AAGCCCACAACTCCGTGGCACTCT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGGCAC-CT
* * *
730926 TTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTT
65 TCTT--TTCAAAGCCCACAACTCCGTGGCACCCTTTT
730963 TTCCCTTTTA
Statistics
Matches: 217, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
125 21 0.10
126 6 0.03
127 4 0.02
128 186 0.86
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (128 bp):
TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGGCACCTT
CTTTTCAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTACATGGCACTCTTTTCC
Found at i:731075 original size:33 final size:33
Alignment explanation
Indices: 731034--731269 Score: 374
Period size: 33 Copynumber: 7.2 Consensus size: 33
731024 CATCTTTCAC
731034 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
731066 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
731099 CCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 -CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
731132 CCTTCCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 CCTT-CTCTAAAGCCCACACAAGTCGGTGGCAAA
*
731165 CCTTCTTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTC-TCTAAAGCCCACACAAGTCGGTGGCAAA
*
731199 CCTTCTC-AAAGCCCACACAAGTCGATGGC-AA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
731230 CCATTCTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAAA
731264 CCTTCT
1 CCTTCT
731270 AAGCCTAATA
Statistics
Matches: 191, Mismatches: 5, Indels: 15
0.91 0.02 0.07
Matches are distributed among these distances:
31 3 0.02
32 35 0.18
33 114 0.60
34 39 0.20
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.19
Consensus pattern (33 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:731221 original size:65 final size:65
Alignment explanation
Indices: 731034--731269 Score: 388
Period size: 65 Copynumber: 3.6 Consensus size: 65
731024 CATCTTTCAC
*
731034 CCTT-TCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 CCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-A
731098 A
65 A
731099 CCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA-CCTTCCTCTAAAGCCCACACAAGTCGGTGGC
1 -CCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTT-CTCTAAAGCCCACACAAGTCGGTGGC
731163 AA
64 AA
*
731165 CCTTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACACAAGTCGATGGCA
1 CCTTC-TCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
731229 A
65 A
731230 CCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 CC-TTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
731270 AAGCCTAATA
Statistics
Matches: 164, Mismatches: 1, Indels: 11
0.93 0.01 0.06
Matches are distributed among these distances:
65 64 0.39
66 43 0.26
67 57 0.35
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.19
Consensus pattern (65 bp):
CCTTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:731390 original size:49 final size:48
Alignment explanation
Indices: 731280--731822 Score: 642
Period size: 49 Copynumber: 11.5 Consensus size: 48
731270 AAGCCTAATA
* *
731280 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACC--TT--ATCTTTAAGTCCAATG
* *
731332 TAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCTAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACC-TTATCTTTAAGTCCAATG
*
731381 TAGCCGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGTCCAATG
* *
731424 TAGCTGGCCTTGACTCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACC-TTATCTTTAAGTCCAATG
* *
731473 TAGCTGGCCTTGAATCAACACATTGGCA-C----CTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGTCCAATG
* * *
731516 TCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGTCCAATG
*
731565 TAGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGTCCAATG
* *
731608 TCA-CTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1 T-AGCTGGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGTCCAATG
*
731657 TAGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAATA
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGTCCAATG
* * * *
731700 TTGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCA-CCTTATCTTTAAGTCCAATG
* *
731749 TAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTTCAATG
1 TAGCTGGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGTCCAATG
731798 TAGCTGGCCTTGAATCAGCACATTG
1 TAGCTGGCCTTGAATCAGCACATTG
731823 ACATCCTTTT
Statistics
Matches: 430, Mismatches: 34, Indels: 57
0.83 0.07 0.11
Matches are distributed among these distances:
43 153 0.36
44 4 0.01
48 7 0.02
49 235 0.55
51 3 0.01
52 28 0.07
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (48 bp):
TAGCTGGCCTTGAATCAGCACATTGGCACCTTATCTTTAAGTCCAATG
Found at i:731475 original size:92 final size:92
Alignment explanation
Indices: 731318--731822 Score: 751
Period size: 92 Copynumber: 5.4 Consensus size: 92
731308 CCTTTTCCAT
* * * * * *
731318 CTTTAAGTCTAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCTAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
731383 GCCGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
731410 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
731475 GCTGGCCTTGAATCAACACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
731502 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
731567 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
731594 CTTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
731658 AGCTGGCCTTGAATCAGCACATTGGCAC
65 AGCTGGCCTTGAATCAGCACATTGGCAC
* * *
731686 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
731751 GCTGGCCTTGACTCAGCACATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * *
731782 ATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
731823 ACATCCTTTT
Statistics
Matches: 386, Mismatches: 19, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
92 350 0.91
96 1 0.00
98 35 0.09
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:731974 original size:48 final size:49
Alignment explanation
Indices: 731903--732239 Score: 527
Period size: 48 Copynumber: 6.9 Consensus size: 49
731893 TTTCTCATCA
731903 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCT
* *
731951 TCATCTTTCAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCT
*
732000 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAAGCAGCACATTGGCACC-
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCT
*
732048 TCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCT
* *
732096 TCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCT
* * * *
732145 TCATCTTTAAGTCCAATATAGCTGGCCTTAAATCAGCATATCGGCACCTTT
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--T
*
732196 TCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 T-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
732240 ACATCCTTTT
Statistics
Matches: 265, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
48 139 0.52
49 87 0.33
51 2 0.01
52 37 0.14
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (49 bp):
TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCT
Found at i:732069 original size:97 final size:97
Alignment explanation
Indices: 731903--732239 Score: 532
Period size: 97 Copynumber: 3.4 Consensus size: 97
731893 TTTCTCATCA
*
731903 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTCAGTCCAAT
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAAT
*
731968 GTAGCTGGCCTTGACTCAGCACATTGGCACCT
66 GTAGCTGGCCTTGAATCAGCACATTGGCACCT
* *
732000 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAAGCAGCACATTGGCACCTCACCTTTAAGTCCAAT
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAAT
732065 GTAGCTGGCCTTGAATCAGCACATTGGCACC-
66 GTAGCTGGCCTTGAATCAGCACATTGGCACCT
* *
732096 TCACCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAA
1 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCCAA
* * * *
732161 TATAGCTGGCCTTAAATCAGCATATCGGCACCTTT
65 TGTAGCTGGCCTTGAATCAGCACATTGGCACC--T
*
732196 TCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 T-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
732240 ACATCCTTTT
Statistics
Matches: 220, Mismatches: 15, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
96 45 0.20
97 135 0.61
100 1 0.00
101 39 0.18
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (97 bp):
TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAAT
GTAGCTGGCCTTGAATCAGCACATTGGCACCT
Found at i:732170 original size:145 final size:147
Alignment explanation
Indices: 731907--732239 Score: 553
Period size: 145 Copynumber: 2.3 Consensus size: 147
731897 TCATCATCAT
* *
731907 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTCAGTCCAATGTAG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
* *
731972 CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAAGCAGC
66 CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTAAAGCAGC
*
732037 ACATTGGCACC-T-CAC
131 ACATCGGCACCTTCCAC
732052 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
*
732117 CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTAAATCAGC
66 CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTAAAGCAGC
* *
732182 ATATCGGCACCTTTTCCAT
131 ACATCGGCACC--TTCCAC
*
732201 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
732240 ACATCCTTTT
Statistics
Matches: 175, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
145 134 0.77
148 1 0.01
149 40 0.23
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (147 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTAAAGCAGC
ACATCGGCACCTTCCAC
Found at i:732267 original size:417 final size:405
Alignment explanation
Indices: 731502--732364 Score: 1336
Period size: 417 Copynumber: 2.1 Consensus size: 405
731492 ACATTGGCAC
* *
731502 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCCTCATCTTTAAGTCCAATGTA
* *
731567 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAAGCAGCACATT
* *
731632 GGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
131 GGCATCCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
* * * * *
731697 ATATTGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTAGCTGGCCTTGA
196 ATATAGCTGGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATAGCTGGCCTTAA
* *
731762 CTCAGCACATTGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACAT
261 ATCAGCACATCGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACAT
*
731827 CCTTTTTCATCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAT
326 CCTTTTTCATCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
731892 TTTTCTCATCATCAT
391 TTTTCTCATCATCAT
* * *
731907 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTTTCAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCCTCATCTTTAAGTCCAATGTA
* *
731971 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT-AGCTGGCCTTGAAGCA
66 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCA-CTGGCCTTGAAGCA
732035 GCACATTGGCA-CCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCA
124 GCACATTGGCATCCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CA
* * *
732099 CCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
184 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATAT
*
732164 AGCTGGCCTTAAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAA
249 AGCTGGCCTTAAATCAGCACATCGGCACC--TT-CATCTTTAAGTTCAATGTAGCTGGCCTTGAA
**
732229 TCAGCACATTGACATCCTTTTTCATCATCTTTAAGCCCAATATCGTTGGCTGTGAATCAACATAT
311 TCAGCACATTGACATCCTTTTTCATCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATAT
732294 TGGCATCTTTATCACTTTTCTCATCATCAT
376 TGGCATCTTTATCACTTTTCTCATCATCAT
*
732324 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
732365 TTATCATCTC
Statistics
Matches: 415, Mismatches: 28, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
404 45 0.11
405 39 0.09
408 1 0.00
409 45 0.11
410 37 0.09
414 85 0.20
416 2 0.00
417 161 0.39
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (405 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCCTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAAGCAGCACATT
GGCATCCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
ATATAGCTGGCCTTGAATCAGCACATTGGCACCATCATCTTTAAGTCCAATATAGCTGGCCTTAA
ATCAGCACATCGGCACCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACAT
CCTTTTTCATCATCTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
TTTTCTCATCATCAT
Found at i:737129 original size:43 final size:43
Alignment explanation
Indices: 737047--737137 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
737037 ATCTCATCCC
** * *
737047 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGCCT
1 TAAAGGTGCCAATATGCCAATTCAAGGCCAGCAACATTGGACT
* * **
737090 TAAAGGTGCCAATGTGCCAATTCAAGGCGAGTGACATTGGACT
1 TAAAGGTGCCAATATGCCAATTCAAGGCCAGCAACATTGGACT
737133 TAAAG
1 TAAAG
737138 ATGACAAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (43 bp):
TAAAGGTGCCAATATGCCAATTCAAGGCCAGCAACATTGGACT
Found at i:737185 original size:52 final size:49
Alignment explanation
Indices: 737109--737283 Score: 155
Period size: 52 Copynumber: 3.6 Consensus size: 49
737099 CAATGTGCCA
* *
737109 ATTCAAGGCGAGTGACATTGGACTTAAAGATGACAAAAACACCAATATGCTG
1 ATTCAAGGCCAGTGACATTAGACTTAAAGATGAC--AAAC-CCAATATGCTG
* * * * *
737161 ATTCAAGGCCAGTGATATTAGACTTAAAGGTG------CCAATGTACTA
1 ATTCAAGGCCAGTGACATTAGACTTAAAGATGACAAACCCAATATGCTG
* *
737204 ATTCAAGGCCAATGACATTAGGCTTAAAGATGACAAATGCGCCAATATGCTG
1 ATTCAAGGCCAGTGACATTAGACTTAAAGATGACAAA--C-CCAATATGCTG
* *
737256 ATTCAAGGCCAGTGATATTGGACTTAAA
1 ATTCAAGGCCAGTGACATTAGACTTAAA
737284 TATGGTAAAG
Statistics
Matches: 96, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
43 36 0.38
52 60 0.62
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (49 bp):
ATTCAAGGCCAGTGACATTAGACTTAAAGATGACAAACCCAATATGCTG
Found at i:737220 original size:95 final size:95
Alignment explanation
Indices: 737055--737283 Score: 343
Period size: 95 Copynumber: 2.4 Consensus size: 95
737045 CCTAAAGGTG
** * * *
737055 CCAATATGCTGATTCAAGGCCAGCAATATTGGCCTTAAAGGTGCCAATGTGCCAATTCAAGGCGA
1 CCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGGTGCCAATGTACCAATTCAAGGCCA
*
737120 GTGACATT-GGACTTAAAGATGACAAAAACA
66 ATGACATTAGG-CTTAAAGATGACAAAAACA
* *
737150 CCAATATGCTGATTCAAGGCCAGTGATATTAGACTTAAAGGTGCCAATGTACTAATTCAAGGCCA
1 CCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGGTGCCAATGTACCAATTCAAGGCCA
** *
737215 ATGACATTAGGCTTAAAGATGACAAATGCG
66 ATGACATTAGGCTTAAAGATGACAAAAACA
737245 CCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAA
1 CCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAA
737284 TATGGTAAAG
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
95 119 0.98
96 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (95 bp):
CCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGGTGCCAATGTACCAATTCAAGGCCA
ATGACATTAGGCTTAAAGATGACAAAAACA
Found at i:737386 original size:32 final size:31
Alignment explanation
Indices: 737342--737468 Score: 130
Period size: 32 Copynumber: 4.0 Consensus size: 31
737332 TAGAAGGAGA
* *
737342 TGCCACCAACTTGTGTGGGCTTTTAAACGGGT
1 TGCCACCGACTTGTGTGGGC-TTTAAAAGGGT
* *
737374 TACCACCGACTTGTGTGGGCTTTAAGAAGCGT
1 TGCCACCGACTTGTGTGGGCTTTAA-AAGGGT
* * * *
737406 TGCCAAC-AGCTTCTGTGGGCTTTGAAGGGGT
1 TGCCACCGA-CTTGTGTGGGCTTTAAAAGGGT
* *
737437 TGCCACCGGCTTGTGTGGGCTTTAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAGGGT
737468 T
1 T
737469 TCTCCACTGG
Statistics
Matches: 76, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
31 35 0.46
32 41 0.54
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (31 bp):
TGCCACCGACTTGTGTGGGCTTTAAAAGGGT
Found at i:737698 original size:28 final size:28
Alignment explanation
Indices: 737639--737705 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
737629 TATGCAGCAA
*
737639 GTGCCACTGA-TTGTGGACTTCAAAAAG
1 GTGCCACTGACTTGCGGACTTCAAAAAG
* * *
737666 ATGCCACTGACTTGCGGACTTCGAAGAG
1 GTGCCACTGACTTGCGGACTTCAAAAAG
737694 GTGCCACTGACT
1 GTGCCACTGACT
737706 AGTGGGCTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 9 0.26
28 25 0.74
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (28 bp):
GTGCCACTGACTTGCGGACTTCAAAAAG
Found at i:737765 original size:33 final size:33
Alignment explanation
Indices: 737723--737901 Score: 161
Period size: 33 Copynumber: 5.4 Consensus size: 33
737713 TTTGAGAAGA
*
737723 AAAAGGTGCCACGAAATTGTGGACTTAAAGGGG
1 AAAAGGTGCCACGAAATTGTGGACTTAAAAGGG
* * **
737756 AAAAGGTGCCA-TAGAGTTGTGGACTTAAAAGAA
1 AAAAGGTGCCACGA-AATTGTGGACTTAAAAGGG
* *
737789 AAAAGAGTGCCAC-AAAGTTGTGGACTTAAAAAGA
1 AAAAG-GTGCCACGAAA-TTGTGGACTTAAAAGGG
* *
737823 AAAAGGTACCA-TAGAATTGTGGACTTAAAAGGG
1 AAAAGGTGCCACGA-AATTGTGGACTTAAAAGGG
* * *
737856 -AAAGGATGCCATGGAGTTGTGGACTTAAAA-GG
1 AAAAGG-TGCCACGAAATTGTGGACTTAAAAGGG
737888 AAAAGAGTGCCACG
1 AAAAG-GTGCCACG
737902 GGGTTGTGAA
Statistics
Matches: 120, Mismatches: 16, Indels: 20
0.77 0.10 0.13
Matches are distributed among these distances:
32 8 0.07
33 82 0.68
34 30 0.25
ACGTcount: A:0.41, C:0.11, G:0.29, T:0.19
Consensus pattern (33 bp):
AAAAGGTGCCACGAAATTGTGGACTTAAAAGGG
Found at i:737799 original size:67 final size:66
Alignment explanation
Indices: 737722--737899 Score: 209
Period size: 67 Copynumber: 2.7 Consensus size: 66
737712 CTTTGAGAAG
* *
737722 AAAAAG-GTGCCACGAAATTGTGGACTTAAAGGGGAAAAGGTGCCATAGAGTTGTGGACTTAAAA
1 AAAAAGAGTGCCACGAAATTGTGGACTTAAA-AGGAAAAGGTGCCATAGAATTGTGGACTTAAAA
737786 GA
65 GA
* *
737788 AAAAAGAGTGCCAC-AAAGTTGTGGACTTAAAAAGAAAAAGGTACCATAGAATTGTGGACTTAAA
1 AAAAAGAGTGCCACGAAA-TTGTGGACTT-AAAAGGAAAAGGTGCCATAGAATTGTGGACTTAAA
*
737852 AGG
64 AGA
* * * * *
737855 GAAAGGA-TGCCATGGAGTTGTGGACTTAAAAGGAAAAGAGTGCCA
1 AAAAAGAGTGCCACGAAATTGTGGACTTAAAAGGAAAAG-GTGCCA
737900 CGGGGTTGTG
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
65 10 0.11
66 29 0.31
67 53 0.56
68 3 0.03
ACGTcount: A:0.42, C:0.11, G:0.29, T:0.19
Consensus pattern (66 bp):
AAAAAGAGTGCCACGAAATTGTGGACTTAAAAGGAAAAGGTGCCATAGAATTGTGGACTTAAAAG
A
Found at i:737841 original size:100 final size:99
Alignment explanation
Indices: 737719--737900 Score: 278
Period size: 100 Copynumber: 1.8 Consensus size: 99
737709 GGGCTTTGAG
* * *
737719 AAGAAAAAGGTGCCACGAAATTGTGGACTTAAAGGGGAAAAGG-TGCCATAGAGTTGTGGACTTA
1 AAGAAAAAGGTACCAAGAAATTGTGGACTTAAAAGGG-AAAGGATGCCATAGAGTTGTGGACTTA
737783 AAAGAAAAAAGAGTGCCACAAAGTTGTGGACTTAAA
65 AAAG-AAAAAGAGTGCCACAAAGTTGTGGACTTAAA
*
737819 AAGAAAAAGGTACCATAG-AATTGTGGACTTAAAAGGGAAAGGATGCCATGGAGTTGTGGACTTA
1 AAGAAAAAGGTACCA-AGAAATTGTGGACTTAAAAGGGAAAGGATGCCATAGAGTTGTGGACTTA
*
737883 AAAGGAAAAGAGTGCCAC
65 AAAGAAAAAGAGTGCCAC
737901 GGGGTTGTGA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
99 18 0.24
100 56 0.75
101 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.29, T:0.19
Consensus pattern (99 bp):
AAGAAAAAGGTACCAAGAAATTGTGGACTTAAAAGGGAAAGGATGCCATAGAGTTGTGGACTTAA
AAGAAAAAGAGTGCCACAAAGTTGTGGACTTAAA
Found at i:737909 original size:33 final size:33
Alignment explanation
Indices: 737739--737899 Score: 184
Period size: 33 Copynumber: 4.8 Consensus size: 33
737729 TGCCACGAAA
*
737739 TTGTGGACTTAAAGGGGAAAAG-GTGCCATAGAG
1 TTGTGGACTTAAA-AGGAAAAGAGTGCCATAGAG
* * *
737772 TTGTGGACTTAAAAGAAAAAAGAGTGCCACAAAG
1 TTGTGGACTTAAAAG-GAAAAGAGTGCCATAGAG
* * *
737806 TTGTGGACTTAAAAAGAAAA-AGGTACCATAGAA
1 TTGTGGACTTAAAAGGAAAAGA-GTGCCATAGAG
* *
737839 TTGTGGACTTAAAAGGGAAAG-GATGCCATGGAG
1 TTGTGGACTTAAAAGGAAAAGAG-TGCCATAGAG
737872 TTGTGGACTTAAAAGGAAAAGAGTGCCA
1 TTGTGGACTTAAAAGGAAAAGAGTGCCA
737900 CGGGGTTGTG
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
32 3 0.03
33 79 0.75
34 24 0.23
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.20
Consensus pattern (33 bp):
TTGTGGACTTAAAAGGAAAAGAGTGCCATAGAG
Found at i:737939 original size:31 final size:31
Alignment explanation
Indices: 737861--738290 Score: 178
Period size: 31 Copynumber: 13.5 Consensus size: 31
737851 AAGGGAAAGG
737861 ATGCCA-TGGAGTTGTGGACTT--AAAAGGAAAA
1 ATGCCACT-GAGTTGTGGACTTGGAAAA--AAAA
* * *
737892 GAGTGCCACGGGGTTGTGAACTTGGAAAAAAAA
1 -A-TGCCACTGAGTTGTGGACTTGGAAAAAAAA
* * * *
737925 ATGCCATTGAGTTGTGGACTCGG-AAAAGAG
1 ATGCCACTGAGTTGTGGACTTGGAAAAAAAA
* * *
737955 ATGCCACTGAGTCGTGGACTTTGG-AAAAGAG
1 ATGCCACTGAGTTGTGGAC-TTGGAAAAAAAA
* * *
737986 ATGCCACTGAGTAGTGGACTTTGAAGAAAAAGG
1 ATGCCACTGAGTTGTGGACTTGGAA-AAAAA-A
* * *
738019 ATGCCACTGAGTCGTGG-CTTTTGG-GAAAAAT
1 ATGCCACTGAGTTGTGGAC--TTGGAAAAAAAA
* * *
738050 ATGCCACTGAGTAGTGGACTTTGAAGAAAAAGG
1 ATGCCACTGAGTTGTGGACTTGGAA-AAAAA-A
** * * *
738083 ATGCCACTGAGTCATGGGCTTTGG-GAAAAAG
1 ATGCCACTGAGTTGTGGAC-TTGGAAAAAAAA
* * *
738114 ATGCCACTGAGTAGTGGACTTTGAAGAAAAAGG
1 ATGCCACTGAGTTGTGGACTTGGAA-AAAAA-A
** * * * *
738147 ATGCCACTGAGTCATGGCCTTTGG-GAAAGAG
1 ATGCCACTGAGTTGTGGAC-TTGGAAAAAAAA
* * *
738178 ATGCCACTGAGTAGTGGACTTTGAAGAAAAAG
1 ATGCCACTGAGTTGTGGACTTGGAA-AAAAAA
* ** * * * *
738210 ATTCCACTGAGTCATGGCCTTTGG-GAAAGAG
1 ATGCCACTGAGTTGTGGAC-TTGGAAAAAAAA
* * * *
738241 ATGCCACTAAGTAGTGGACTTTGAAGAAAAATG
1 ATGCCACTGAGTTGTGGACTTGGAA-AAAAA-A
*
738274 ATGCCACTGAGTCGTGG
1 ATGCCACTGAGTTGTGG
738291 CCTTTTGGAA
Statistics
Matches: 310, Mismatches: 63, Indels: 49
0.73 0.15 0.12
Matches are distributed among these distances:
30 37 0.12
31 115 0.37
32 56 0.18
33 89 0.29
34 9 0.03
35 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.23
Consensus pattern (31 bp):
ATGCCACTGAGTTGTGGACTTGGAAAAAAAA
Found at i:737952 original size:99 final size:98
Alignment explanation
Indices: 737737--737944 Score: 242
Period size: 100 Copynumber: 2.1 Consensus size: 98
737727 GGTGCCACGA
* *
737737 AATTGTGGACTTAAAGGGGAAAAGGTGCCATAGAGTTGTGGACTTAAAAGAAAAAAGAGTGCCAC
1 AATTGTGGACTGAAAAGGG-AAAGGTGCCATAGAGTTGTGGACTTAAAAGAAAAAAGAGTGCCAC
*
737802 AAAGTTGTGGACTTAAAAAGAAAAAGGTACCATAG
65 AAAGTTGTGAACTTAAAAAGAAAAA-GTACCATAG
* * *
737837 AATTGTGGACTTAAAAGGGAAAGGATGCCATGGAGTTGTGGACTTAAAAG-GAAAAGAGTGCCAC
1 AATTGTGGACTGAAAAGGGAAAGG-TGCCATAGAGTTGTGGACTTAAAAGAAAAAAGAGTGCCAC
*** * * *
737901 GGGGTTGTGAACTTGGAAAA-AAAAA-TGCCATTG
65 AAAGTTGTGAACTT-AAAAAGAAAAAGTACCATAG
*
737934 AGTTGTGGACT
1 AATTGTGGACT
737945 CGGAAAAGAG
Statistics
Matches: 95, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
97 16 0.17
99 33 0.35
100 46 0.48
ACGTcount: A:0.39, C:0.10, G:0.29, T:0.22
Consensus pattern (98 bp):
AATTGTGGACTGAAAAGGGAAAGGTGCCATAGAGTTGTGGACTTAAAAGAAAAAAGAGTGCCACA
AAGTTGTGAACTTAAAAAGAAAAAGTACCATAG
Found at i:738030 original size:64 final size:63
Alignment explanation
Indices: 737948--738306 Score: 540
Period size: 64 Copynumber: 5.6 Consensus size: 63
737938 GTGGACTCGG
* *
737948 AAAAGAGATGCCACTGAGTCGTGGACTTTGGAAAAGAGATGCCACTGAGTAGTGGACTTTGAAGA
1 AAAAG-GATGCCACTGAGTCATGGCCTTTGGAAAA-AGATGCCACTGAGTAGTGGACTTTGAAGA
* * *
738013 AAAAGGATGCCACTGAGTCGTGGCTTTTGGGAAAAATATGCCACTGAGTAGTGGACTTTGAAGA
1 AAAAGGATGCCACTGAGTCATGGCCTTT-GGAAAAAGATGCCACTGAGTAGTGGACTTTGAAGA
*
738077 AAAAGGATGCCACTGAGTCATGGGCTTTGGGAAAAAGATGCCACTGAGTAGTGGACTTTGAAGA
1 AAAAGGATGCCACTGAGTCATGGCCTTT-GGAAAAAGATGCCACTGAGTAGTGGACTTTGAAGA
*
738141 AAAAGGATGCCACTGAGTCATGGCCTTTGGGAAAGAGATGCCACTGAGTAGTGGACTTTGAAGA
1 AAAAGGATGCCACTGAGTCATGGCCTTT-GGAAAAAGATGCCACTGAGTAGTGGACTTTGAAGA
* * *
738205 AAAA-GATTCCACTGAGTCATGGCCTTTGGGAAAGAGATGCCACTAAGTAGTGGACTTTGAAGA
1 AAAAGGATGCCACTGAGTCATGGCCTTT-GGAAAAAGATGCCACTGAGTAGTGGACTTTGAAGA
* *
738268 AAAATGATGCCACTGAGTCGTGGCCTTTTGGAAAAAGAT
1 AAAAGGATGCCACTGAGTCATGGCC-TTTGGAAAAAGAT
738307 TTGAAAGATT
Statistics
Matches: 277, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
63 61 0.22
64 202 0.73
65 14 0.05
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.23
Consensus pattern (63 bp):
AAAAGGATGCCACTGAGTCATGGCCTTTGGAAAAAGATGCCACTGAGTAGTGGACTTTGAAGA
Found at i:739487 original size:21 final size:20
Alignment explanation
Indices: 739462--739512 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
739452 TTTGTTGTTC
739462 CTTTTTATTTTGC-TTTTGCACT
1 CTTTTT-TTTT-CATTTTGC-CT
739484 -TTTTTTTTTCATTTTGCCT
1 CTTTTTTTTTCATTTTGCCT
739503 CTTTTTTTTT
1 CTTTTTTTTT
739513 ACTACATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 3 0.11
20 19 0.70
21 5 0.19
ACGTcount: A:0.06, C:0.16, G:0.06, T:0.73
Consensus pattern (20 bp):
CTTTTTTTTTCATTTTGCCT
Found at i:746598 original size:50 final size:51
Alignment explanation
Indices: 746520--746653 Score: 191
Period size: 51 Copynumber: 2.6 Consensus size: 51
746510 ATTTGCCTGT
* * *
746520 ATGTATCGATACATTGAATAATGCATCGATACATC-TGGTAAAAACCCA-A
1 ATGTATCGATACAATGAATAATGTATCGATACATCTTGATAAAAACCCAGA
* *
746569 ATTGTATCGATACAATGAAGAATATATCGATACATCTTGATAAAAACCCAGA
1 A-TGTATCGATACAATGAATAATGTATCGATACATCTTGATAAAAACCCAGA
*
746621 ATGTGTCGATACAATGAATAATGTATCGATACA
1 ATGTATCGATACAATGAATAATGTATCGATACA
746654 ATCAGTAAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 30 0.41
51 41 0.55
52 2 0.03
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.28
Consensus pattern (51 bp):
ATGTATCGATACAATGAATAATGTATCGATACATCTTGATAAAAACCCAGA
Found at i:748030 original size:16 final size:17
Alignment explanation
Indices: 748001--748032 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
747991 TCAAGAAAAA
748001 AAAGTCATTAAAATTTC
1 AAAGTCATTAAAATTTC
748018 AAAGTCA-TAAAATTT
1 AAAGTCATTAAAATTT
748033 TACAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.34
Consensus pattern (17 bp):
AAAGTCATTAAAATTTC
Found at i:752855 original size:13 final size:13
Alignment explanation
Indices: 752837--752862 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
752827 ACATTTTGGG
752837 ATGTATCGATACA
1 ATGTATCGATACA
752850 ATGTATCGATACA
1 ATGTATCGATACA
752863 TATTGGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:752879 original size:32 final size:33
Alignment explanation
Indices: 752815--752882 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
752805 CGTTACAAGC
* *
752815 CAATGTATTGATACATTTTGGGATGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
752848 CAATGTATCGATACATATTGGG-TGTATCGATA
1 CAATGTATCGATACATATTGGGATGTATCGATA
752880 CAA
1 CAA
752883 ATAGTTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATATTGGGATGTATCGATA
Found at i:752970 original size:20 final size:20
Alignment explanation
Indices: 752923--753014 Score: 64
Period size: 20 Copynumber: 4.5 Consensus size: 20
752913 GCCAATAACC
*
752923 TGTATCGATACATTCT-TTACA
1 TGTATCGATACATT-TGGT-CA
*
752944 AGTATCGATACATTTGGTCA
1 TGTATCGATACATTTGGTCA
* *
752964 TGTATCGATAC-TGTGCAATC-
1 TGTATCGATACATTTG--GTCA
***
752984 TGTATCGATACATTTGGAGG
1 TGTATCGATACATTTGGTCA
753004 TGTATCGATAC
1 TGTATCGATAC
753015 TTTTCAGGGT
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
19 3 0.05
20 35 0.61
21 19 0.33
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (20 bp):
TGTATCGATACATTTGGTCA
Found at i:753608 original size:23 final size:23
Alignment explanation
Indices: 753581--753627 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
753571 ATTTAACACT
753581 TTCGCACATTAACAATTTCTTTC
1 TTCGCACATTAACAATTTCTTTC
753604 TTCGCACATTAACAATTTCTTTC
1 TTCGCACATTAACAATTTCTTTC
753627 T
1 T
753628 CCCCCTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.04, T:0.45
Consensus pattern (23 bp):
TTCGCACATTAACAATTTCTTTC
Found at i:755472 original size:13 final size:13
Alignment explanation
Indices: 755454--755491 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
755444 ATAAACCCTT
755454 TGTATCGATACAC
1 TGTATCGATACAC
*
755467 TGTATCGATACAT
1 TGTATCGATACAC
*
755480 TGCATCGATACA
1 TGTATCGATACA
755492 GAGAATGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:761131 original size:52 final size:52
Alignment explanation
Indices: 760984--761111 Score: 229
Period size: 52 Copynumber: 2.5 Consensus size: 52
760974 GAAATATGAG
*
760984 AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCA
1 AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGAA
*
761036 AATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGAA
1 AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGAA
*
761088 AATTTGCCTGCATGCATCGATACA
1 AATTTGCCTGCATGTATCGATACA
761112 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (52 bp):
AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGAA
Found at i:761138 original size:13 final size:13
Alignment explanation
Indices: 761120--761144 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
761110 CAAAGATCAG
761120 TGTATCGATACAA
1 TGTATCGATACAA
761133 TGTATCGATACA
1 TGTATCGATACA
761145 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:761223 original size:32 final size:33
Alignment explanation
Indices: 761182--761250 Score: 131
Period size: 32 Copynumber: 2.1 Consensus size: 33
761172 GGCAGTAGCT
761182 TACATTGTATCGATACAACAC-TTATGTATCGA
1 TACATTGTATCGATACAACACTTTATGTATCGA
761214 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACACTTTATGTATCGA
761247 TACA
1 TACA
761251 AATAGTTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 21 0.58
33 15 0.42
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAACACTTTATGTATCGA
Found at i:761224 original size:13 final size:13
Alignment explanation
Indices: 761206--761230 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
761196 ACAACACTTA
761206 TGTATCGATACAT
1 TGTATCGATACAT
761219 TGTATCGATACA
1 TGTATCGATACA
761231 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:763130 original size:16 final size:15
Alignment explanation
Indices: 763104--763133 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
763094 CAATCTTTTG
763104 TTCAAGATTTTCAAT
1 TTCAAGATTTTCAAT
763119 TTCAATGATTTTCAA
1 TTCAA-GATTTTCAA
763134 CTTATTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (15 bp):
TTCAAGATTTTCAAT
Found at i:765217 original size:13 final size:13
Alignment explanation
Indices: 765199--765224 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
765189 ACATTTTGGG
765199 ATGTATCGATACA
1 ATGTATCGATACA
765212 ATGTATCGATACA
1 ATGTATCGATACA
765225 TATTGGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:765241 original size:32 final size:33
Alignment explanation
Indices: 765177--765244 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
765167 CGTCACAAGC
*
765177 CAATGTACCGATACATTTTGGGATGTATCGATA
1 CAATGTACCGATACATATTGGGATGTATCGATA
*
765210 CAATGTATCGATACATATTGGG-TGTATCGATA
1 CAATGTACCGATACATATTGGGATGTATCGATA
765242 CAA
1 CAA
765245 ACAGTTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (33 bp):
CAATGTACCGATACATATTGGGATGTATCGATA
Found at i:765332 original size:20 final size:21
Alignment explanation
Indices: 765285--765337 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
765275 GCCAATGACC
*
765285 TGTATCGATACATTCTTTACA
1 TGTATCGATACATTCTGTACA
*
765306 AGTATCGATACATT-TGGT-CA
1 TGTATCGATACATTCT-GTACA
765326 TGTATCGATACA
1 TGTATCGATACA
765338 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTACA
Found at i:765343 original size:13 final size:13
Alignment explanation
Indices: 765325--765349 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
765315 ACATTTGGTC
765325 ATGTATCGATACA
1 ATGTATCGATACA
765338 ATGTATCGATAC
1 ATGTATCGATAC
765350 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:766045 original size:113 final size:113
Alignment explanation
Indices: 765866--766107 Score: 261
Period size: 113 Copynumber: 2.1 Consensus size: 113
765856 CGATATCAGG
** * * * *
765866 CTTGAAGATGAGAAGAATGTTAAAGATGCCAATATGTTGATTCAAGGCTAGCGATGCTGGGCTTA
1 CTTGAAGATGAGAAGAATAATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATACTAGGCTTA
* * **
765931 AAGATGACAAAG-GTGCCAATGTACTGATTCAAGGCTAGCGACATTGGA
66 AAGAT-ACAAAGAATGCCAATGTACTAATTCAAGGCTAGCGACATTAAA
* * *** * *
765979 GTTGAAGATGAGAAGAATAATAAAGGTGTTGATATGCTGATTCAAGGCCAGCGATATTAGGTTTA
1 CTTGAAGATGAGAAGAATAATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATACTAGGCTTA
* * * * *
766044 AAGATACATAGAATGCTAATGTGCTAATTCACGGCTAGTGACATTAAA
66 AAGATACAAAGAATGCCAATGTACTAATTCAAGGCTAGCGACATTAAA
*
766092 CTGGAAGATGAGAAGA
1 CTTGAAGATGAGAAGA
766108 GCGCCAATGT
Statistics
Matches: 104, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
112 5 0.05
113 99 0.95
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (113 bp):
CTTGAAGATGAGAAGAATAATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATACTAGGCTTA
AAGATACAAAGAATGCCAATGTACTAATTCAAGGCTAGCGACATTAAA
Found at i:766523 original size:51 final size:52
Alignment explanation
Indices: 766389--766514 Score: 130
Period size: 51 Copynumber: 2.4 Consensus size: 52
766379 AATACGAATG
* * ** * * *
766389 TGCTGATTCAATGCCAATGACATTAGGCCTAAGAATGATAAAAGTGCTAATA
1 TGCTGATTAAAGGCCAGCGACATCAGGCTTAAGAATGATAAAAGTGCCAATA
* *
766441 TGCTGATTAAAGGCCAGCGATATCAGGCTTAAG-ATGATAAAGGTGCCAAT-
1 TGCTGATTAAAGGCCAGCGACATCAGGCTTAAGAATGATAAAAGTGCCAATA
* *
766491 TAGCTGATTTAAGGCCATCGACAT
1 T-GCTGATTAAAGGCCAGCGACAT
766515 TGGACTTAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 1 0.02
51 34 0.56
52 26 0.43
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (52 bp):
TGCTGATTAAAGGCCAGCGACATCAGGCTTAAGAATGATAAAAGTGCCAATA
Found at i:766804 original size:32 final size:32
Alignment explanation
Indices: 766768--766843 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
766758 AATTTGTGTA
*
766768 GGCTTTTGAGAAGGTTGCCA-CTGACTTGTATG
1 GGCTTTTGAGAAGGTTGCCACCAG-CTTGTATG
*
766800 GGC-TTTGAGGAAGGTTGCCACCAGCTTGTGTG
1 GGCTTTTGA-GAAGGTTGCCACCAGCTTGTATG
*
766832 GGCTTTGGAGAA
1 GGCTTTTGAGAA
766844 TGGATACCAC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
31 5 0.13
32 27 0.71
33 6 0.16
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.30
Consensus pattern (32 bp):
GGCTTTTGAGAAGGTTGCCACCAGCTTGTATG
Found at i:768580 original size:18 final size:19
Alignment explanation
Indices: 768559--768594 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
768549 TGGACCCCCT
768559 CTTTTTTTTTT-GTTTTTG
1 CTTTTTTTTTTGGTTTTTG
768577 CTTTTTTTTTTGGTTTTT
1 CTTTTTTTTTTGGTTTTT
768595 TTTTAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.00, C:0.06, G:0.11, T:0.83
Consensus pattern (19 bp):
CTTTTTTTTTTGGTTTTTG
Found at i:777547 original size:13 final size:13
Alignment explanation
Indices: 777525--777555 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
777515 TCGATACAAA
*
777525 ATACATTGTATCG
1 ATACAATGTATCG
777538 ATACAATGTATCG
1 ATACAATGTATCG
777551 ATACA
1 ATACA
777556 TGAGTTACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (13 bp):
ATACAATGTATCG
Found at i:785745 original size:52 final size:51
Alignment explanation
Indices: 785667--785769 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 51
785657 AGAGTTAGAT
* *
785667 TCATCAAACACAATGTGGATTGATTCTTTAACAACTAAGGTTTTTTTATTAA
1 TCATCAAAAACAACGTGGATTGATTCTTTAACAACTAA-GTTTTTTTATTAA
785719 TCATCAAAAACAACGTGGATTGATTCTTTAACAACTAAGTTTTTTTATTAA
1 TCATCAAAAACAACGTGGATTGATTCTTTAACAACTAAGTTTTTTTATTAA
785770 ACACGTGATA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 13 0.27
52 36 0.73
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (51 bp):
TCATCAAAAACAACGTGGATTGATTCTTTAACAACTAAGTTTTTTTATTAA
Found at i:787011 original size:79 final size:79
Alignment explanation
Indices: 786928--787460 Score: 437
Period size: 79 Copynumber: 6.7 Consensus size: 79
786918 ATAATAAGGC
* ** * *
786928 TGGAGTATCCCCAATGGTGGAAAATCGATGTTTT-GAAAATAAAATTGGGGTTAGAGTATCCTCT
1 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAG-AAATAAAATCGGGGTTAGAGTATCCCCT
786992 CGAAAATAACGGGGT
65 CGAAAATAACGGGGT
* * * * * *
787007 TGGAGTATTCCCGATTATAGAAAATCGATATTTTAGAAAT-AAATCCAGGGTTAAAGTATTCCCT
1 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAAAT-CGGGGTTAGAGTATCCCCT
** *
787071 AAAAAATAACAGGGT
65 CGAAAATAACGGGGT
* * ** * * * * *
787086 TGAAGTATCCTCGATGGTGGAAAATGGGTGTTTTAGAAATAAAATCAGGGCTGGAGTATCCCCTC
1 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTC
*
787151 -ATAAATAATGGGGT
66 GA-AAATAACGGGGT
* * * * * *
787165 TGGAGTATCCCTGATTATGGAAAATCGATGTTTTAGAAATAAGACCGGGGTTGGAGTTTCCCCTT
1 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTC
*
787230 GAAAATAACAGGGT
66 GAAAATAACGGGGT
* ** * * * * * * * *
787244 TTGAGTATCTTCGATTGTGAAAAATCGGTGTTTTAAAAATAAAA-CTGTGGTTGGAGTATTCCTT
1 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAAATC-GGGGTTAGAGTATCCCCT
*
787308 CGAAAATAAGGGGGT
65 CGAAAATAACGGGGT
** * * *
787323 TGGAGTATCCCTAATTATGGAAAATCGATGTTTTAGAAATCAAGTCGAGGTTAGAGTATCCCCTC
1 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTC
*
787388 -AGAAATAAAGGGGT
66 GA-AAATAACGGGGT
*** ** * * * * * * *
787402 CAAAGTATCCTTGATTGTGAAAAATTGATATTTTAAAAATAAAGTCGGGGTTGGAGTAT
1 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAAATCGGGGTTAGAGTAT
787461 ACTCGATGGT
Statistics
Matches: 356, Mismatches: 90, Indels: 16
0.77 0.19 0.03
Matches are distributed among these distances:
78 7 0.02
79 342 0.96
80 7 0.02
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (79 bp):
TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTC
GAAAATAACGGGGT
Found at i:787126 original size:158 final size:158
Alignment explanation
Indices: 786931--787460 Score: 565
Period size: 158 Copynumber: 3.4 Consensus size: 158
786921 ATAAGGCTGG
* * * * * *
786931 AGTATCCCCAATGGTGGAAAATCGATGTTTTGAAAATAAAATTGGGGTTAGAGTATCCTCTCGAA
1 AGTATCCTCGATGGTGAAAAATCGATGTTTTAAAAATAAAATCGGGGTTGGAGTATCCTCTCGAA
* *
786996 AATAACGGGGTTGGAGTATTCCC-GATTATAGAAAATCGATATTTTAGAAATAAATCCAGGGTTA
66 AATAACGGGGTTGGAGTA-TCCCTGATTATGGAAAATCGATGTTTTAGAAATAAATCCAGGGTTA
*
787060 AAGTATTCCCTAAAAAATAACAGGGTTGA
130 GAGTATTCCCTAAAAAATAACAGGGTTGA
* * * * * * *
787089 AGTATCCTCGATGGTGGAAAATGGGTGTTTTAGAAATAAAATCAGGGCTGGAGTATCCCCTC-AT
1 AGTATCCTCGATGGTGAAAAATCGATGTTTTAAAAATAAAATCGGGGTTGGAGTATCCTCTCGA-
* *
787153 AAATAATGGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTAGAAATAAGA-CCGGGGTT
65 AAATAACGGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTAGAAATAA-ATCCAGGGTT
* **
787217 GGAGT-TTCCCCTTGAAAATAACAGGGTTTG-
129 AGAGTATT-CCCTAAAAAATAACAGGG-TTGA
* * * *
787247 AGTATCTTCGATTGTGAAAAATCGGTGTTTTAAAAATAAAA-CTGTGGTTGGAGTATTCCT-TCG
1 AGTATCCTCGATGGTGAAAAATCGATGTTTTAAAAATAAAATC-GGGGTTGGAGTA-TCCTCTCG
* * * *
787310 AAAATAAGGGGGTTGGAGTATCCCTAATTATGGAAAATCGATGTTTTAGAAATCAAGTCGA-GGT
64 AAAATAACGGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTAGAAAT-AAATCCAGGGT
* * * **
787374 TAGAGTATCCCCTCAGAAATAA-AGGGGTCAA
128 TAGAGTATTCCCTAAAAAATAACA-GGGTTGA
* * * * *
787405 AGTATCCTTGATTGTGAAAAATTGATATTTTAAAAATAAAGTCGGGGTTGGAGTAT
1 AGTATCCTCGATGGTGAAAAATCGATGTTTTAAAAATAAAATCGGGGTTGGAGTAT
787461 ACTCGATGGT
Statistics
Matches: 311, Mismatches: 47, Indels: 29
0.80 0.12 0.07
Matches are distributed among these distances:
157 11 0.04
158 287 0.92
159 13 0.04
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (158 bp):
AGTATCCTCGATGGTGAAAAATCGATGTTTTAAAAATAAAATCGGGGTTGGAGTATCCTCTCGAA
AATAACGGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTAGAAATAAATCCAGGGTTAG
AGTATTCCCTAAAAAATAACAGGGTTGA
Found at i:787270 original size:237 final size:236
Alignment explanation
Indices: 786901--787460 Score: 547
Period size: 237 Copynumber: 2.4 Consensus size: 236
786891 AATGGGGGTC
* ** * ** *
786901 AGAGTACCCCCTCAGAAATAATAAGGCTGGAGTATCCCCAATGGTGGAAAATCGATGTTTT-GAA
1 AGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCTGATTGTGGAAAATCGATGTTTTAG-A
* * * *
786965 AATAAAATTGGGGTTAGAGTATCCTCTCGAAAATAACGGGGTTGGAGTATTCCCGATTATAGAAA
65 AAT-AAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATTCCCGATTATAGAAA
* *
787030 ATCGATATTTTAGAAATAAATCCAG-GGTTAAAGTATTCCCTAAAAAATAACAGGGTTGAAGTAT
129 ATCGATATTTTAAAAATAAA-ACAGTGGTTAAAGTATTCCCTAAAAAATAACAGGGTTGAAGTAT
* * * *
787094 -CCTCGATGGTGGAAAATGGGTGTTTTAGAAATAAAATC-AGGGCT
193 CCCT-AATGATGGAAAATCGATGTTTTAGAAATAAAATCGA-GGCT
* * *
787138 GGAGTATCCCCTCATAAATAATGGGGTTGGAGTATCCCTGATTATGGAAAATCGATGTTTTAGAA
1 AGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCTGATTGTGGAAAATCGATGTTTTAGAA
* * * * * *
787203 ATAAGACCGGGGTTGGAGTTTCCCCTTGAAAATAACAGGGTTTGAGTA-TCTTCGATTGT-GAAA
66 ATAA-ATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATTC-CCGATTATAG-AA
* * * ** * ** ** *
787266 AATCGGTGTTTTAAAAATAAAACTGTGGTTGGAGTATTCCTTCGAAAATAAGGGGGTTGGAGTAT
128 AATCGATATTTTAAAAATAAAACAGTGGTTAAAGTATTCCCTAAAAAATAACAGGGTTGAAGTAT
* * * *
787331 CCCTAATTATGGAAAATCGATGTTTTAGAAATCAAGTCGAGGTT
193 CCCTAATGATGGAAAATCGATGTTTTAGAAATAAAATCGAGGCT
* *** * * * * *
787375 AGAGTATCCCCTCAGAAATAAAGGGGTCAAAGTATCCTTGATTGTGAAAAATTGATATTTTAAAA
1 AGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCTGATTGTGGAAAATCGATGTTTTAGAA
787440 ATAAAGTCGGGGTTGGAGTAT
66 ATAAA-TCGGGGTTGGAGTAT
787461 ACTCGATGGT
Statistics
Matches: 260, Mismatches: 55, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
236 8 0.03
237 247 0.95
238 5 0.02
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (236 bp):
AGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCTGATTGTGGAAAATCGATGTTTTAGAA
ATAAATCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATTCCCGATTATAGAAAAT
CGATATTTTAAAAATAAAACAGTGGTTAAAGTATTCCCTAAAAAATAACAGGGTTGAAGTATCCC
TAATGATGGAAAATCGATGTTTTAGAAATAAAATCGAGGCT
Found at i:789029 original size:15 final size:15
Alignment explanation
Indices: 789009--789043 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
788999 GGTTGGTTTT
789009 GGGTTGGATTATTTA
1 GGGTTGGATTATTTA
* *
789024 GGGTTGGGTTATTTC
1 GGGTTGGATTATTTA
789039 GGGTT
1 GGGTT
789044 ATAAAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.40, T:0.46
Consensus pattern (15 bp):
GGGTTGGATTATTTA
Found at i:789091 original size:16 final size:16
Alignment explanation
Indices: 789066--789134 Score: 50
Period size: 16 Copynumber: 4.4 Consensus size: 16
789056 GGCTATTTTT
*
789066 GGGTTCGGGTCATTTC
1 GGGTTTGGGTCATTTC
**
789082 GGGTTTGGGTTGTTTC
1 GGGTTTGGGTCATTTC
* * *
789098 GAGTTCGGGTTATTTC
1 GGGTTTGGGTCATTTC
** *
789114 AAGTTTGGGTCA-ATC
1 GGGTTTGGGTCATTTC
789129 GGGTTT
1 GGGTTT
789135 AACACTCGGG
Statistics
Matches: 41, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
15 6 0.15
16 35 0.85
ACGTcount: A:0.10, C:0.12, G:0.36, T:0.42
Consensus pattern (16 bp):
GGGTTTGGGTCATTTC
Found at i:790200 original size:16 final size:15
Alignment explanation
Indices: 790179--790241 Score: 74
Period size: 16 Copynumber: 4.0 Consensus size: 15
790169 CAAGTTAATT
790179 ATTTGGGTCATTTCAG
1 ATTTGGGTCATTTC-G
790195 ATTTGGGTCATTTCG
1 ATTTGGGTCATTTCG
790210 AATTCT-GGTCATTTCG
1 -ATT-TGGGTCATTTCG
*
790226 AGTTTGGGTTATTTCG
1 A-TTTGGGTCATTTCG
790242 GGTTCGGATC
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
15 3 0.07
16 38 0.90
17 1 0.02
ACGTcount: A:0.16, C:0.13, G:0.25, T:0.46
Consensus pattern (15 bp):
ATTTGGGTCATTTCG
Found at i:791258 original size:13 final size:13
Alignment explanation
Indices: 791240--791266 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
791230 TAAAACCCAG
791240 AATGTATCGATAC
1 AATGTATCGATAC
791253 AATGTATCGATAC
1 AATGTATCGATAC
791266 A
1 A
791267 TCTGGGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:791275 original size:43 final size:43
Alignment explanation
Indices: 791210--791299 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
791200 TACATTTAGA
*
791210 AATGTATCGATACATCTAGGTAAAACCCAGAATGTATCGATAC
1 AATGTATCGATACATCTAGGTAAAACCCAGAATGTATCAATAC
* *
791253 AATGTATCGATACATCTGGGTAAAACCTAGAATGTATCAATAC
1 AATGTATCGATACATCTAGGTAAAACCCAGAATGTATCAATAC
791296 AATG
1 AATG
791300 AAGAATGTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (43 bp):
AATGTATCGATACATCTAGGTAAAACCCAGAATGTATCAATAC
Found at i:791967 original size:76 final size:74
Alignment explanation
Indices: 791887--792083 Score: 209
Period size: 75 Copynumber: 2.6 Consensus size: 74
791877 TTAGAAGGGG
* * *
791887 AAAGAAAAAGAAAGGGTGTCCTGCTCTTTGAGGACAAAGGAAAAGGAGTACGTCCTGTCTCTTCA
1 AAAGAAAAAGAAAAGG-GTCCTGCTCTTTGAGGACAAAGGAAAAGGAGTACATCCT-ACTCTTCA
791952 AGGACAAAGGA
64 AGGACAAAGGA
* * * * * *
791963 AAAGAGAATGAAATGGGACCTGCT-TCTTAAGGACAAAGGAAAAAGGAGTACATCCTACTCTTTA
1 AAAGAAAAAGAAAAGGGTCCTGCTCT-TTGAGGACAAAGG-AAAAGGAGTACATCCTACTCTTCA
792027 AGGACAAAGGA
64 AGGACAAAGGA
* **
792038 AAA-AAGGAAATAAAATGCATCCTGCTCTTTGAGGACAAAGGAAAAG
1 AAAGAA--AAAGAAAA-GGGTCCTGCTCTTTGAGGACAAAGGAAAAG
792084 AAGGAAATTA
Statistics
Matches: 99, Mismatches: 16, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
74 2 0.02
75 39 0.39
76 38 0.38
77 19 0.19
78 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.18
Consensus pattern (74 bp):
AAAGAAAAAGAAAAGGGTCCTGCTCTTTGAGGACAAAGGAAAAGGAGTACATCCTACTCTTCAAG
GACAAAGGA
Found at i:792059 original size:42 final size:43
Alignment explanation
Indices: 792011--792115 Score: 158
Period size: 43 Copynumber: 2.5 Consensus size: 43
792001 GAAAAAGGAG
* *
792011 TACATCCTACTCTTTAAGGACAAAGGAAAA-AAGGAAATAAAA
1 TACATCCTGCTCTTTGAGGACAAAGGAAAAGAAGGAAATAAAA
* *
792053 TGCATCCTGCTCTTTGAGGACAAAGGAAAAGAAGGAAATTAAA
1 TACATCCTGCTCTTTGAGGACAAAGGAAAAGAAGGAAATAAAA
*
792096 TACGTCCTGCTCTTTGAGGA
1 TACATCCTGCTCTTTGAGGA
792116 TAATGATTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
42 27 0.48
43 29 0.52
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (43 bp):
TACATCCTGCTCTTTGAGGACAAAGGAAAAGAAGGAAATAAAA
Found at i:792943 original size:19 final size:19
Alignment explanation
Indices: 792904--792942 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
792894 CTTAGGTAGG
792904 TTCTTTTATTTTCTCTTTT
1 TTCTTTTATTTTCTCTTTT
792923 TTCTTTT-TTCTT-TCTTTT
1 TTCTTTTATT-TTCTCTTTT
792941 TT
1 TT
792943 TGCGTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (19 bp):
TTCTTTTATTTTCTCTTTT
Found at i:792950 original size:20 final size:20
Alignment explanation
Indices: 792913--792951 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
792903 GTTCTTTTAT
*
792913 TTTCTCTTTTTTCTTTTTTC
1 TTTCTCTTTTTTCGTTTTTC
792933 TTTCT-TTTTTTGCGTTTTT
1 TTTCTCTTTTTT-CGTTTTT
792952 TTAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.79
Consensus pattern (20 bp):
TTTCTCTTTTTTCGTTTTTC
Found at i:802651 original size:20 final size:20
Alignment explanation
Indices: 802626--802864 Score: 104
Period size: 20 Copynumber: 10.8 Consensus size: 20
802616 TTTTTACCCA
*
802626 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTTATC
* * *
802646 AATGTATCAATACATGTATG
1 AATGTATCGATACATTTATC
802666 AATGTATCGATACATTCTATCTTTTTTACCC
1 AATGTATCGATACATT-TA-------T---C
* *
802697 AGATGTATCGATACATTTTTT
1 A-ATGTATCGATACATTTATC
* *
802718 AATGTATCGATACATGTATG
1 AATGTATCGATACATTTATC
*
802738 AATGTATCAATACATTCTATC
1 AATGTATCGATACATT-TATC
* *
802759 TTTTTACCCAGATGTATCGATATATTTTTC
1 -----A---A--TGTATCGATACATTTATC
* * * *
802789 AATGCATTGATACATGTATG
1 AATGTATCGATACATTTATC
802809 AATGTATCGATACATTCT-TC
1 AATGTATCGATACATT-TATC
802829 AATGTATCGATACATTCT-TC
1 AATGTATCGATACATT-TATC
802849 AATGTATCGATACATT
1 AATGTATCGATACATT
802865 CTGTCTTTTT
Statistics
Matches: 167, Mismatches: 28, Indels: 48
0.69 0.12 0.20
Matches are distributed among these distances:
20 122 0.73
21 7 0.04
22 1 0.01
24 1 0.01
25 1 0.01
26 1 0.01
28 1 0.01
29 1 0.01
30 3 0.02
31 14 0.08
32 15 0.09
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.41
Consensus pattern (20 bp):
AATGTATCGATACATTTATC
Found at i:802804 original size:71 final size:72
Alignment explanation
Indices: 802616--802826 Score: 352
Period size: 72 Copynumber: 2.9 Consensus size: 72
802606 AAAAGTCACA
* *
802616 TTTTTACCCAAATGTATCGATACATTTTTCAATGTATCAATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
802681 TCTATCT
66 TCTATCT
* *
802688 TTTTTACCCAGATGTATCGATACATTTTTTAATGTATCGATACATGTATGAATGTATCAATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
802753 TCTATC-
66 TCTATCT
* * *
802759 TTTTTACCCAGATGTATCGATATATTTTTCAATGCATTGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
802824 TCT
66 TCT
802827 TCAATGTATC
Statistics
Matches: 130, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 63 0.48
72 67 0.52
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (72 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TCTATCT
Found at i:802865 original size:20 final size:20
Alignment explanation
Indices: 802770--802866 Score: 124
Period size: 20 Copynumber: 4.8 Consensus size: 20
802760 TTTTACCCAG
* *
802770 ATGTATCGATATATTTTTCA
1 ATGTATCGATACATTCTTCA
* * * *
802790 ATGCATTGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
802810 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
802830 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
802850 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
802867 GTCTTTTTAC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
19 1 0.02
20 64 0.97
21 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:802912 original size:111 final size:111
Alignment explanation
Indices: 802699--802914 Score: 292
Period size: 111 Copynumber: 1.9 Consensus size: 111
802689 TTTTACCCAG
* * *
802699 ATGTATCGATACATTTTTTAATGTATCGATACATGTATGAATGTATCAATACATTCTATCTTTTT
1 ATGTATCGATACATTCTTCAATGTATCGATACATGTATCAATGTATCAATACATTCTATCTTTTT
* ** *
802764 ACCCAGATGTATCGATATATTTTTCAATGCATTGATACATGTATGA
66 ACCCAGATGTATCGATACATTAATCAATGCATCGATACATGTATGA
* * *
802810 ATGTATCGATACATTCTTCAATGTATCGATACAT-TCTTCAATGTATCGATACATTCTGTCTTTT
1 ATGTATCGATACATTCTTCAATGTATCGATACATGT-ATCAATGTATCAATACATTCTATCTTTT
* *
802874 TACCCAGATGTATGGATACATTGAAT-AATGTATCGATACAT
65 TACCCAGATGTATCGATACATT-AATCAATGCATCGATACAT
802915 TTAGTTAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
110 1 0.01
111 89 0.98
112 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (111 bp):
ATGTATCGATACATTCTTCAATGTATCGATACATGTATCAATGTATCAATACATTCTATCTTTTT
ACCCAGATGTATCGATACATTAATCAATGCATCGATACATGTATGA
Found at i:816821 original size:12 final size:11
Alignment explanation
Indices: 816803--816875 Score: 62
Period size: 11 Copynumber: 6.7 Consensus size: 11
816793 TCTTTCGTAC
*
816803 AAAAAAAACCA
1 AAAAAAAAACA
816814 AGAAAAAAAAC-
1 A-AAAAAAAACA
*
816825 -AAAAAAACCA
1 AAAAAAAAACA
*
816835 AAAAAACAA-A
1 AAAAAAAAACA
*
816845 AAAAAGAAACA
1 AAAAAAAAACA
*
816856 AAAAATAAACA
1 AAAAAAAAACA
816867 AATAAAAAA
1 AA-AAAAAA
816876 GGGGTCCAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
9 8 0.16
10 8 0.16
11 20 0.41
12 13 0.27
ACGTcount: A:0.84, C:0.11, G:0.03, T:0.03
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:816828 original size:9 final size:9
Alignment explanation
Indices: 816816--816859 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
816806 AAAAACCAAG
816816 AAAAAAAAC
1 AAAAAAAAC
816825 -AAAAAAAC
1 AAAAAAAAC
*
816833 CAAAAAAAC
1 AAAAAAAAC
*
816842 AAAAAAAAG
1 AAAAAAAAC
816851 AAACAAAAA
1 AAA-AAAAA
816860 ATAAACAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
8 8 0.26
9 18 0.58
10 5 0.16
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:816828 original size:21 final size:20
Alignment explanation
Indices: 816804--816873 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 20
816794 CTTTCGTACA
816804 AAAAAAACCAAGAAAAAAAAC
1 AAAAAAACCAA-AAAAAAAAC
816825 AAAAAAACCAAAAAAACAAA-
1 AAAAAAACCAAAAAAA-AAAC
* *
816845 AAAAAGAAACAAAAAATAAAC
1 AAAAA-AACCAAAAAAAAAAC
816866 AAATAAAA
1 AAA-AAAA
816874 AAGGGGTCCA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 13 0.30
21 28 0.65
22 2 0.05
ACGTcount: A:0.83, C:0.11, G:0.03, T:0.03
Consensus pattern (20 bp):
AAAAAAACCAAAAAAAAAAC
Found at i:816839 original size:30 final size:30
Alignment explanation
Indices: 816804--816860 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
816794 CTTTCGTACA
*
816804 AAAAAAACCAAGAAAAA-AAACAAAAAAACC
1 AAAAAAA-CAAAAAAAAGAAACAAAAAAACC
816834 AAAAAAACAAAAAAAAGAAACAAAAAA
1 AAAAAAACAAAAAAAAGAAACAAAAAA
816861 TAAACAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (30 bp):
AAAAAAACAAAAAAAAGAAACAAAAAAACC
Found at i:816872 original size:8 final size:8
Alignment explanation
Indices: 816817--816848 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
816807 AAAACCAAGA
816817 AAAAAAAC
1 AAAAAAAC
816825 AAAAAAACC
1 AAAAAAA-C
816834 AAAAAAAC
1 AAAAAAAC
816842 AAAAAAA
1 AAAAAAA
816849 AGAAACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:816873 original size:15 final size:14
Alignment explanation
Indices: 816803--816875 Score: 55
Period size: 13 Copynumber: 5.4 Consensus size: 14
816793 TCTTTCGTAC
* *
816803 AAAAAAAACCAA-G
1 AAAAAAAACAAACA
816816 AAAAAAAACAAA-A
1 AAAAAAAACAAACA
*
816829 AAACCAAAA-AAAC-
1 AAA-AAAAACAAACA
*
816842 AAAAAAAAGAAACA
1 AAAAAAAACAAACA
*
816856 AAAAATAAACAAATA
1 AAAAA-AAACAAACA
816871 AAAAA
1 AAAAA
816876 GGGGTCCAGA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
12 4 0.08
13 24 0.49
14 9 0.18
15 12 0.24
ACGTcount: A:0.84, C:0.11, G:0.03, T:0.03
Consensus pattern (14 bp):
AAAAAAAACAAACA
Found at i:821024 original size:16 final size:14
Alignment explanation
Indices: 821003--821045 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
820993 GTAAACCCAA
821003 AAAACAACAAAACAAC
1 AAAACAA-AAAA-AAC
821019 AAAACAAAAAAAAC
1 AAAACAAAAAAAAC
*
821033 ACACACAAAAAAA
1 A-AAACAAAAAAA
821046 GTGCAAAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 4 0.16
15 14 0.56
16 7 0.28
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAACAAAAAAAAC
Found at i:822362 original size:34 final size:34
Alignment explanation
Indices: 822316--822496 Score: 249
Period size: 34 Copynumber: 5.3 Consensus size: 34
822306 ATCTCTTTTC
* *
822316 TTCAAAGTCCACAACTTCGTGGCACCTTTTCCTT
1 TTCAAAGCCCACAACTTCGTGGCACCTTTTTCTT
*
822350 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTTCGTGGCACCTTTTTCTT
*
822384 TTTAAAGCCCACAAC-TCTGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTTC-GTGGCACCTTTTTCTT
* * * *
822418 TTTAAAGCCCACCACTCCATGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTTCGTGGCACCTTTTTCTT
*
822452 TTCAAAGCCCACAAC-TCTGCGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTTC-GTGGCACCTTTTTCTT
822486 TTCAAAGCCCA
1 TTCAAAGCCCA
822497 TACAAGTCGA
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
33 2 0.02
34 128 0.98
35 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.11, T:0.34
Consensus pattern (34 bp):
TTCAAAGCCCACAACTTCGTGGCACCTTTTTCTT
Found at i:822406 original size:68 final size:68
Alignment explanation
Indices: 822316--822496 Score: 283
Period size: 68 Copynumber: 2.7 Consensus size: 68
822306 ATCTCTTTTC
* * *
822316 TTCAAAGTCCACAACT-TCGTGGCACCTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
1 TTCAAAGCCCACAACTCT-GTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCATGGCACCTTTT
822380 TCTT
65 TCTT
* * *
822384 TTTAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTTAAAGCCCACCACTCCATGGCACCTTTTT
1 TTCAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCATGGCACCTTTTT
822449 CTT
66 CTT
*
822452 TTCAAAGCCCACAACTCTGCGGCACCTTTTTCTTTTCAAAGCCCA
1 TTCAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGCCCA
822497 TACAAGTCGA
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
68 102 0.99
69 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.11, T:0.34
Consensus pattern (68 bp):
TTCAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCATGGCACCTTTTT
CTT
Found at i:822567 original size:65 final size:65
Alignment explanation
Indices: 822489--822610 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 65
822479 TTTTCTTTTC
* * * *
822489 AAAGCCCATACAAGTCGATGGCAA-TCTTCTTCTAAAGTCCACACAACTTGGTGGCAATCCCCAC
1 AAAGCCCACACAAGTCGATGGCAACTATTC-TCTAAAGCCCACACAACTCGGTGGCAATCCCCAC
822553 T
65 T
* * *
822554 AAAGCCCACACAAGTTGGTGGCAACTATTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 AAAGCCCACACAAGTCGATGGCAACTATTCTCTAAAGCCCACACAACTCGGTGGCAA
822611 CCCTTCTAAG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
65 45 0.92
66 4 0.08
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (65 bp):
AAAGCCCACACAAGTCGATGGCAACTATTCTCTAAAGCCCACACAACTCGGTGGCAATCCCCACT
Found at i:822611 original size:33 final size:32
Alignment explanation
Indices: 822489--822610 Score: 136
Period size: 33 Copynumber: 3.8 Consensus size: 32
822479 TTTTCTTTTC
* *
822489 AAAGCCCATACAAGTCGATGGCAATCTTCTTCT
1 AAAGCCCACACAAGTCGGTGGCAATCTTC-TCT
* * * ** *
822522 AAAGTCCACACAACTTGGTGGCAATCCCCACT
1 AAAGCCCACACAAGTCGGTGGCAATCTTCTCT
* *
822554 AAAGCCCACACAAGTTGGTGGCAACTATTCTCT
1 AAAGCCCACACAAGTCGGTGGCAA-TCTTCTCT
822587 AAAGCCCACACAAGTCGGTGGCAA
1 AAAGCCCACACAAGTCGGTGGCAA
822611 CCCTTCTAAG
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
32 24 0.33
33 49 0.67
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCAATCTTCTCT
Found at i:822724 original size:43 final size:43
Alignment explanation
Indices: 822612--822845 Score: 261
Period size: 43 Copynumber: 5.1 Consensus size: 43
822602 CGGTGGCAAC
* *
822612 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
822656 CCCCCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
822705 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
822748 CCTTTATCTTTAAGACCAATGTAGCTGGCCCTGAATCAGCACATTGGCA
1 -C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
822797 CCTCTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
822840 CCTTTA
1 CCTTTA
822846 TCTTTAAGAC
Statistics
Matches: 161, Mismatches: 17, Indels: 21
0.81 0.09 0.11
Matches are distributed among these distances:
43 81 0.50
44 1 0.01
45 1 0.01
48 2 0.01
49 73 0.45
50 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:822783 original size:92 final size:92
Alignment explanation
Indices: 822612--822855 Score: 398
Period size: 92 Copynumber: 2.6 Consensus size: 92
822602 CGGTGGCAAC
* * *** *
822612 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCCCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATG
*
822677 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCCTGAATCAGCACATTGGCA
822705 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGT
822770 AGCTGGCCCTGAATCAGCACATTGGCA
66 AGCTGGCCCTGAATCAGCACATTGGCA
* *
822797 CCTCTAAGTCCAATATAGCTGGCTTTGAATCAGCATATTGGCACCTTTATCTTTAAGAC
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGAC
822856 TGTTAGGATT
Statistics
Matches: 142, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 138 0.97
93 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGT
AGCTGGCCCTGAATCAGCACATTGGCA
Found at i:823090 original size:21 final size:21
Alignment explanation
Indices: 823057--823097 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
823047 CTAAGTAAAA
823057 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
823078 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
823098 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:823162 original size:20 final size:19
Alignment explanation
Indices: 823137--823207 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
823127 ACCCTGAAAA
823137 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
823157 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
**
823176 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
823197 GTATCGATACA
1 GTATCGATACA
823208 GGACATTGGG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:823261 original size:53 final size:53
Alignment explanation
Indices: 823177--823313 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
823167 AGATTGCATA
*
823177 GTATCGATACACACAAATATGTATCGATACAGGACATTGGGAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
* *
823231 GTATCGATACACACAATATGTATTGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
823284 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
823314 TTGGTAGTAG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 64 0.82
54 14 0.18
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:823408 original size:13 final size:13
Alignment explanation
Indices: 823390--823428 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
823380 TCACTATTCA
823390 TGTATCGATACAT
1 TGTATCGATACAT
* *
823403 TGTATCGATATAG
1 TGTATCGATACAT
823416 TGTATCGATACAT
1 TGTATCGATACAT
823429 CATAAATAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:824283 original size:43 final size:43
Alignment explanation
Indices: 824220--824482 Score: 195
Period size: 43 Copynumber: 5.8 Consensus size: 43
824210 CTCACAAAGA
* *
824220 CCAATGTAGCTGGCCCTGAATCAGCACATTGGCACCTCTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGT
* *
824263 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGA
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACC----TC--TAAGT
* * ** * *
824312 CCAATGTCGCTGGCCTTGAATTGGTACATTGGTACCT-TAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGT
* * * * *
824354 CCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTTGTCCTCTTTTAAGC
1 CCAATATAGCTGGCCTTGAATCAGCACATT-G-G-C----ACCTC---TAAGT
* * *
824407 CCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGT
* *
824450 CCAATATCGCTGGCCTTGAATCAGCATATTGGC
1 CCAATATAGCTGGCCTTGAATCAGCACATTGGC
824483 GTCTTTGTCA
Statistics
Matches: 170, Mismatches: 33, Indels: 34
0.72 0.14 0.14
Matches are distributed among these distances:
42 28 0.16
43 67 0.39
44 1 0.01
45 1 0.01
46 3 0.02
47 2 0.01
49 36 0.21
50 1 0.01
51 1 0.01
53 30 0.18
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (43 bp):
CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTAAGT
Found at i:824419 original size:53 final size:52
Alignment explanation
Indices: 824348--824533 Score: 201
Period size: 53 Copynumber: 3.7 Consensus size: 52
824338 CATTGGTACC
*
824348 TTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTTGTCCTCTT
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CTTTGTCCTCTT
* * * * * *
824401 TTAAGCCCAATGTAGCTGGCCTTGAATCAGCACATT--AGC-----AC-C-T
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCCTCTT
*
824444 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTT
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CTTTGTCCTCTT
* *
824497 TTAAGTCCGATATTGCTGGCCTTGAATCAGCATATTG
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
824534 ATACCTTTTC
Statistics
Matches: 107, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
43 33 0.31
44 1 0.01
45 2 0.02
46 1 0.01
50 1 0.01
51 1 0.01
52 1 0.01
53 67 0.63
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (52 bp):
TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCCTCTT
Found at i:824480 original size:96 final size:95
Alignment explanation
Indices: 824216--824533 Score: 428
Period size: 96 Copynumber: 3.4 Consensus size: 95
824206 TGAGCTCACA
* * *
824216 AAGACCAATGTAGCTGGCCCTGAATCAGCACATTGGCACCTCTAAGTCCAATATAGCTGGCCTTG
1 AAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTG
*
824281 AATCAGCATATTGGCACCTTTG--TC-TTT
66 AATCAGCATATTGGCGCCTTTGTCTCTTTT
* ** * *
824308 AAGACCAATGTCGCTGGCCTTGAATTGGTACATTGGTACC-TTAAGTCCAATATCGCTGGCCTTG
1 AAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTG
*
824372 AATCAACATATTGGCGCCTTTGTCCTCTTTT
66 AATCAGCATATTGGCGCCTTTGT-CTCTTTT
* *
824403 AAGCCCAATGTAGCTGGCCTTGAATCAGCACATTAGCACCTTTAAGTCCAATATCGCTGGCCTTG
1 AAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTG
*
824468 AATCAGCATATTGGCGTCTTTGTCATCTTTT
66 AATCAGCATATTGGCGCCTTTGTC-TCTTTT
* * * * *
824499 AAGTCCGATATTGCTGGCCTTGAATCAGCATATTG
1 AAGACCAATGTAGCTGGCCTTGAATCAGCACATTG
824534 ATACCTTTTC
Statistics
Matches: 195, Mismatches: 25, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
91 42 0.22
92 34 0.17
94 2 0.01
95 37 0.19
96 80 0.41
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (95 bp):
AAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTG
AATCAGCATATTGGCGCCTTTGTCTCTTTT
Found at i:824548 original size:53 final size:53
Alignment explanation
Indices: 824443--824579 Score: 147
Period size: 53 Copynumber: 2.6 Consensus size: 53
824433 CATTAGCACC
* **
824443 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTGTCATCT
* * *
824496 TTTAAGTCCGATATTGCTGGCCTTGAATCAGCATATTGATACCTTT-TCCATC-
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTGT-CATCT
* * *
824548 TTGAA--CCGAATGTCGCTGGCCATGAATCAGCA
1 TTTAAGTCC-AATATCGCTGGCCTTGAATCAGCA
824580 CATTATCATT
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
50 2 0.03
51 20 0.28
52 5 0.07
53 44 0.62
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (53 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTGTCATCT
Found at i:825358 original size:19 final size:19
Alignment explanation
Indices: 825330--825395 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
825320 TGTCAACGAT
*
825330 TTGTACCGATACATAAGTG
1 TTGTATCGATACATAAGTG
825349 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
825363 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
825381 TTGTATCGATACATA
1 TTGTATCGATACATA
825396 TGAAGCTACT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
19 25 0.62
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:825368 original size:13 final size:13
Alignment explanation
Indices: 825350--825374 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
825340 ACATAAGTGT
825350 TGTATCGATACAA
1 TGTATCGATACAA
825363 TGTATCGATACA
1 TGTATCGATACA
825375 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:825372 original size:32 final size:32
Alignment explanation
Indices: 825331--825393 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
825321 GTCAACGATT
825331 TGTACCGATACATAAGTGTTGTATCGATACAA
1 TGTACCGATACATAAGTGTTGTATCGATACAA
*
825363 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTACCGATACATAAGTGTTGTATCGATACA
825394 TATGAAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (32 bp):
TGTACCGATACATAAGTGTTGTATCGATACAA
Found at i:825599 original size:52 final size:52
Alignment explanation
Indices: 825471--825600 Score: 233
Period size: 52 Copynumber: 2.5 Consensus size: 52
825461 ACTAATCTTT
* *
825471 GTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAAT
1 GTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATGAAAA
*
825523 GTATCGATACATACAGGCAAATTTTCCCAGATGTATCGATACACTATGAAAA
1 GTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATGAAAA
825575 GTATCGATACATGCAGGCAAATTTTC
1 GTATCGATACATGCAGGCAAATTTTC
825601 ATATTTCGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (52 bp):
GTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATGAAAA
Found at i:831569 original size:28 final size:28
Alignment explanation
Indices: 831487--832271 Score: 592
Period size: 28 Copynumber: 27.0 Consensus size: 28
831477 CAAAATCCAT
* * *
831487 AAGTCAGTGGCACCCCTTTTAAAACGCAC
1 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
831516 AAGTCAGTGGCACCCCTTTCAAAGCCCAC
1 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
* * *
831545 AAGTTAGTGGCACCCTTCCAAAGCCCGC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* * *
831573 AAGTCAGTGGCAACCTTCCAAAGCCTAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* *
831601 AAGTCAGTGGCATTCC-TCCAAAGCCCAC
1 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
* *
831629 AAGTCAGTGGCATCCTTCCAAAGCCCAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* *
831657 AAGTCAGTGGCACCTTTTTAAAGCCCACAC
1 AAGTCAGTGGCACCCTTTCAAAG-CC-CAC
* *
831687 AAGTC-GATGGCAACCCTCTCCAAAGCCCATAT
1 AAGTCAG-TGGC-ACCCT-TTCAAAGCCC--AC
*
831719 AAGTCAGTGGCACCCTTTTAAAGCCCACAC
1 AAGTCAGTGGCACCCTTTCAAAG-CC-CAC
* * *
831749 AAG-CTGGTGGCAATCCTTTTAAAGCCCAC
1 AAGTC-AGTGGC-ACCCTTTCAAAGCCCAC
* *
831778 AAGTCAGTGGCACCCTTTTTAAAACCCAC
1 AAGTCAGTGGCACCC-TTTCAAAGCCCAC
*
831807 AAGTCAGTGGCATCCTTTCAAAGCCCAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* * * *
831835 AAGTTAATGGCATCCTTTTAAAGCCCAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* * *
831863 AAGTCAGTGGCACCTTTTTAAAGCTCAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
831891 AAG-CTAGTGGCACCC-TTCAAAGCCCAC
1 AAGTC-AGTGGCACCCTTTCAAAGCCCAC
* *
831918 AAGTTAGTGGCACCCTTTTAAAGCCCAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* * * *
831946 AAGTTAGTGGCACCTTTTTAAAGCCTAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* * *
831974 AAGTTAGTTGCACCC-TTCAAAGCCCAT
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* * * *
832001 AATTTAGTGGCATCCTTTTAAAGCCCAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* *
832029 AAGTCAGTGGCACCCCTTTTAATGCCCAC
1 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
** *
832058 ATAAGTTGGTGGCAACCTTTTCAAAGCCCACAC
1 --AAGTCAGTGGC-ACCCTTTCAAAG-CC-CAC
* * *
832091 AAGTCGGTGGCATATCTTTTCAAAGTCCACAC
1 AAGTCAGTGGC--ACCCTTTCAAAG-CC-CAC
** * ** *
832123 AAGTTGGTAGCATCGTTTTCCAAAAGTCCATAC
1 AAGTCAGTGGCA-CCCTTT-C-AAAG-CC-CAC
* **
832156 AAGTCGGTGGCAACCCTTTTTGAAGCCCAC
1 AAGTCAGTGGC-ACCC-TTTCAAAGCCCAC
* * *
832186 AAATCAGTGGCACTCTTTCAAAGCCCAT
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* * **
832214 AAGTCAGTGGCATCCTTTTAAAGCTTAC
1 AAGTCAGTGGCACCCTTTCAAAGCCCAC
* *
832242 AAGTCAGTGGCAGCCCTTTTAAAACCCAC
1 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
832271 A
1 A
832272 CAAGTTAGTA
Statistics
Matches: 625, Mismatches: 98, Indels: 66
0.79 0.12 0.08
Matches are distributed among these distances:
27 48 0.08
28 291 0.47
29 110 0.18
30 42 0.07
31 57 0.09
32 49 0.08
33 24 0.04
34 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (28 bp):
AAGTCAGTGGCACCCTTTCAAAGCCCAC
Found at i:831938 original size:83 final size:83
Alignment explanation
Indices: 831487--832347 Score: 591
Period size: 83 Copynumber: 9.8 Consensus size: 83
831477 CAAAATCCAT
* * * * *
831487 AAGTCAGTGGCACCCCTTTTAAAACGCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTTAG
1 AAGTTAGTGGCA-CCCTTTTAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAG
*
831552 TGGCACCCTTCCAAAGCCCGC
64 TGGCACCCTT-CAAAGCCCAC
* * ** * *
831573 AAGTCAGTGGCAACCTTCCAAAGCCTACAAGTCAGTGGCA--TTCCTCCAAAGCCCACAAGTCAG
1 AAGTTAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTT--TTCAAAGCCCACAAGTCAG
*
831636 TGGCATCCTTCCAAAGCCCAC
64 TGGCACCCTT-CAAAGCCCAC
* * * * *
831657 AAGTCAGTGGCACCTTTTTAAAGCCCACACAAGTC-GATGGCAACCCTCTCCAAAGCCCATATAA
1 AAGTTAGTGGCACCCTTTTAAAG-CC-CACAAGTCAG-TGGC-A-CCTTTTCAAAGCCC--ACAA
*
831721 GTCAGTGGCACCCTTTTAAAGCCCACAC
59 GTCAGTGGCACCC-TTCAAAG-CC-CAC
* * * * *
831749 AAGCTGGTGGCAATCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTTTAAAACCCACAAGTCAG
1 AAGTTAGTGGC-ACCCTTTTAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAG
*
831814 TGGCATCCTTTCAAAGCCCAC
64 TGGCA-CCCTTCAAAGCCCAC
* * * *
831835 AAGTTAATGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTTAAAGCTCACAAG-CTAGT
1 AAGTTAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC-AGT
831899 GGCACCCTTCAAAGCCCAC
65 GGCACCCTTCAAAGCCCAC
* * * * *
831918 AAGTTAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACCTTTTTAAAGCCTACAAGTTAGTT
1 AAGTTAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTG
*
831983 GCACCCTTCAAAGCCCAT
66 GCACCCTTCAAAGCCCAC
* * * *
832001 AATTTAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCCCTTTT-AATGCCCACATAAGTT
1 AAGTTAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCA--CCTTTTCAAAGCCCAC--AAGTC
* *
832065 GGTGGCAACCTTTTCAAAGCCCACAC
62 AGTGGC-ACC-CTTCAAAG-CC-CAC
** ** ** * * *
832091 AAGTCGGTGGCATATCTTTTCAAAGTCCACACAAGTTGGTAGCATCGTTTTCCAAAAGTCCATAC
1 AAGTTAGTGGCA-CCCTTTT-AAAG-CC-CACAAGTCAGTGGCA-CCTTTT-C-AAAG-CC-CAC
* **
832156 AAGTCGGTGGCAACCCTTTTTGAAGCCCAC
57 AAGTCAGTGGC-ACCC--TTCAAAGCCCAC
* * * * * **
832186 AAATCAGTGGCACTCTTTCAAAGCCCATAAGTCAGTGGCATCCTTTT-AAAGCTTACAAGTCAGT
1 AAGTTAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGT
* *
832250 GGCAGCCCTTTTAAAACCCACAC
65 GGCA-CCC--TTCAAAGCC-CAC
* * * * * *
832273 AAGTTAGTAGTAACCTTTTCAAAGCCCACACAAATCGGTGGCACATTTTTTCAAAGTCCACACAA
1 AAGTTAGTGGCACCCTTTT-AAAG-CC-CACAAGTCAGTGGCAC--CTTTTCAAAG-CC-CACAA
*
832338 GTCGGTGGCA
59 GTCAGTGGCA
832348 TATCTTTTTT
Statistics
Matches: 628, Mismatches: 99, Indels: 88
0.77 0.12 0.11
Matches are distributed among these distances:
82 1 0.00
83 126 0.20
84 86 0.14
85 61 0.10
86 67 0.11
87 22 0.04
88 44 0.07
89 7 0.01
90 55 0.09
91 42 0.07
92 24 0.04
93 22 0.04
94 30 0.05
95 13 0.02
96 19 0.03
97 7 0.01
98 2 0.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (83 bp):
AAGTTAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTG
GCACCCTTCAAAGCCCAC
Found at i:832115 original size:32 final size:31
Alignment explanation
Indices: 831513--832408 Score: 384
Period size: 28 Copynumber: 30.4 Consensus size: 31
831503 TTTTAAAACG
* * *
831513 CACAAGTCAGTGGCACCCCTTTCAAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
** * *
831542 CACAAGTTAGTGGC-ACCCTTCCAAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* * *
831570 CGCAAGTCAGTGGCAACC-TTCCAAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* * * *
831598 TACAAGTCAGTGGCATTCC--TCCAAAG-CC-
1 CACAAGTCGGTGGCA-ACCTTTTCAAAGCCCA
* * *
831626 CACAAGTCAGTGGCATCC-TTCCAAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* *
831654 CACAAGTCAGTGGC-ACCTTTTTAAAGCCCA
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* * *
831684 CACAAGTCGATGGCAACCCTCTCCAAAGCCCA
1 CACAAGTCGGTGGCAA-CCTTTTCAAAGCCCA
* * * *
831716 TATAAGTCAGTGGCACCCTTTT-AAAGCCCA
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
831746 CACAAG-CTGGTGGCAATCCTTTT-AAAG-CC-
1 CACAAGTC-GGTGGCAA-CCTTTTCAAAGCCCA
* * * *
831775 CACAAGTCAGTGGCACCCTTTTTAAA-ACC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* *
831804 CACAAGTCAGTGGCATCC-TTTCAAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
*** *
831832 CACAAGTTAATGGCATCCTTTT-AAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* * *
831860 CACAAGTCAGTGGC-ACCTTTTTAAAG--CT
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* *
831888 CACAAG-CTAGTGGC-ACC-CTTCAAAG-CC-
1 CACAAGTC-GGTGGCAACCTTTTCAAAGCCCA
** *
831915 CACAAGTTAGTGGCACCCTTTT-AAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
** *
831943 CACAAGTTAGTGGC-ACCTTTTTAAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* ** * *
831971 TACAAGTTAGTTGC-ACC-CTTCAAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* * ** *
831998 CATAATTTAGTGGCATCCTTTT-AAAG-CC-
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* * *
832026 CACAAGTCAGTGGCACCCCTTTT-AATGCCCA
1 CACAAGTCGGTGGCA-ACCTTTTCAAAGCCCA
* *
832057 CATAAGTTGGTGGCAACCTTTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* *
832088 CACAAGTCGGTGGCATATCTTTTCAAAGTCCA
1 CACAAGTCGGTGGCA-ACCTTTTCAAAGCCCA
* * * * *
832120 CACAAGTTGGTAGCATCGTTTTCCAAAAGTCCA
1 CACAAGTCGGTGGCAACCTTTT-C-AAAGCCCA
* **
832153 TACAAGTCGGTGGCAACCCTTTTTGAAGCCCA
1 CACAAGTCGGTGGCAA-CCTTTTCAAAGCCCA
*
832185 CA-AA-TCAGTGGC-A-CTCTTTCAAAG-CC-
1 CACAAGTCGGTGGCAACCT-TTTCAAAGCCCA
* * * *
832211 CATAAGTCAGTGGCATCCTTTT-AAAG--CT
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* * * *
832239 TACAAGTCAGTGGCAGCCCTTTT-AAAACCCA
1 CACAAGTCGGTGGCA-ACCTTTTCAAAGCCCA
** * *
832270 CACAAGTTAGTAGTAACCTTTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
* ** *
832301 CACAAATCGGTGGCACATTTTTTCAAAGTCCA
1 CACAAGTCGGTGGCA-ACCTTTTCAAAGCCCA
* *
832333 CACAAGTCGGTGGCATATCTTTTTTAAAGCCCA
1 CACAAGTCGGTGGCA-A-CCTTTTCAAAGCCCA
* *
832366 CACAAGTCGGTGGCAATCTTTTTCAAAGTCCA
1 CACAAGTCGGTGGCAA-CCTTTTCAAAGCCCA
832398 CACAAGTCGGT
1 CACAAGTCGGT
832409 TTTAAACCTA
Statistics
Matches: 711, Mismatches: 111, Indels: 87
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.00
27 62 0.09
28 261 0.37
29 84 0.12
30 56 0.08
31 82 0.12
32 112 0.16
33 47 0.07
34 5 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (31 bp):
CACAAGTCGGTGGCAACCTTTTCAAAGCCCA
Found at i:832229 original size:213 final size:202
Alignment explanation
Indices: 831513--832405 Score: 788
Period size: 213 Copynumber: 4.3 Consensus size: 202
831503 TTTTAAAACG
* ** * ** *
831513 CACAAGTCAGTGGCACCCCTTTCAAAGCC-CACAAGTTAGTGGC-ACCCTTCCAAAGCCCGCAAG
1 CACAAGTCAGTGGCA-CCCTTTTAAAGCCACACAAGTCGGTGGCAACCTTTTTAAAGCCCACAAG
* * *
831576 TCAGTGGCAACCTTCCAAAGCCTACAAGTCAGTGGCATTCC-TCCAAAGCCCACAAGTCAGTGGC
65 TCAGTGGC-ACCTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGC
* ** * * *
831640 ATCCTTCCAAAGCCCACAAGTCAGTGGCACCTTTTTAAAGCCCACACAAGTCGATGGCAACCCTC
128 ACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACACAAGTCGGTGGCAA-TCTC
* *
831705 TCCAAAGCCCA
192 TTCAAAGTCCA
* *
831716 TATAAGTCAGTGGCACCCTTTTAAAGCCCACACAAG-CTGGTGGCAATCC-TTTTAAAGCCCACA
1 CACAAGTCAGTGGCACCCTTTTAAAG-CCACACAAGTC-GGTGGCAA-CCTTTTTAAAGCCCACA
* * * *
831779 AGTCAGTGGCACCCTTTTTAAAACCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAATG
63 AGTCAGTGGCA-CC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTG
* * * *
831844 GCATCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTTAAAG--CTCACAAG-CTAGTGGC-A-C
126 GCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACACAAGTC-GGTGGCAATC
*
831904 CCTTCAAAG-CC-
190 TCTTCAAAGTCCA
* ** *
831915 CACAAGTTAGTGGCACCCTTTTAAAGCC-CACAAGTTAGTGGC-ACCTTTTTAAAGCCTACAAGT
1 CACAAGTCAGTGGCACCCTTTTAAAGCCACACAAGTCGGTGGCAACCTTTTTAAAGCCCACAAGT
* * * * * * *
831978 TAGTTGCACCCTTCAAAGCCCATAATTTAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACC
66 CAGTGGCACCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-C
* **
832043 CCTTTTAATGCCCACATAAGTTGGTGGCAACCTTTTCAAAGCCCACACAAGTCGGTGGCATATCT
130 CCTTTTAAAGCCCAC--AAGTCAGTGGC-ACCTTTTCAAAGCCCACACAAGTCGGTGGCA-ATCT
*
832108 TTTCAAAGTCCA
191 CTTCAAAGTCCA
** * * * * *
832120 CACAAGTTGGTAGCATCGTTTTCCAAAAGTCCATACAAGTCGGTGGCAACCCTTTTTGAAGCCCA
1 CACAAGTCAGTGGCACCCTTTT---AAAG-CCACACAAGTCGGTGGCAA-CCTTTTTAAAGCCCA
* * * **
832185 CAAATCAGTGGCACTCTTTCAAAGCCCATAAGTCAGTGGCATCCTTTTAAAGCTTACAAGTCAGT
61 CAAGTCAGTGGCAC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGT
* * ** *
832250 GGCAGCCCTTTTAAAACCCACACAAGTTAGTAGTAACCTTTTCAAAGCCCACACAAATCGGTGGC
125 GGCA-CCCTTTT-AAAGCC-CACAAGTCAGT-GGCACCTTTTCAAAGCCCACACAAGTCGGTGGC
* *
832315 ACATTTTTTCAAAGTCCA
186 A-ATCTCTTCAAAGTCCA
* ** *
832333 CACAAGTCGGTGGCATATCTTTTTTAAAGCCCACACAAGTCGGTGGCAATCTTTTTCAAAGTCCA
1 CACAAGTCAGTGGC--A-CCCTTTTAAAG-CCACACAAGTCGGTGGCAACCTTTTT-AAAG-CC-
832398 CACAAGTC
59 CACAAGTC
832406 GGTTTTAAAC
Statistics
Matches: 566, Mismatches: 84, Indels: 68
0.79 0.12 0.09
Matches are distributed among these distances:
194 44 0.08
195 18 0.03
196 23 0.04
197 20 0.04
198 13 0.02
199 23 0.04
200 14 0.02
201 9 0.02
202 11 0.02
203 25 0.04
204 25 0.04
205 45 0.08
206 81 0.14
208 4 0.01
209 2 0.00
210 11 0.02
211 1 0.00
212 30 0.05
213 145 0.26
214 7 0.01
215 11 0.02
216 4 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (202 bp):
CACAAGTCAGTGGCACCCTTTTAAAGCCACACAAGTCGGTGGCAACCTTTTTAAAGCCCACAAGT
CAGTGGCACCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACC
CTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACACAAGTCGGTGGCAATCTCTTCA
AAGTCCA
Found at i:834349 original size:203 final size:203
Alignment explanation
Indices: 833949--834339 Score: 597
Period size: 203 Copynumber: 1.9 Consensus size: 203
833939 GGTATGATCA
* * ** * *
833949 ACGGGCTATTTCTTCATCCTAACTGACTCTAGGATTGTGTAAATGAGTTCGTAATGCTCATACCG
1 ACGGGCTATTTCATCATCCTAACTGACTATAGGATTGCATAAATGAGTTCGTAATGCTAATACCA
* *
834014 CTTTTCCCTTTTGGTCACAGATGTTCGAATGTCTATGACTCGAGTCTAAACCCGTAAACACCAAA
66 CTTTTCCCTTTTGGTCACAGATGTTCGAATGTCCATGACTCAAGTCTAAACCCGTAAACACCAAA
**
834079 AAAAATTTTAAATTCTCCTTTATTTTCCTTTCTTCCTTACCAGTAGCAATACTATTACACCAAAA
131 AAAAATTCAAAATTCTCCTTTATTTTCCTTTCTTCCTTACCAGTAGCAATACTATTACACCAAAA
834144 AAAAATCG
196 AAAAATCG
* * * *
834152 ACGGGCTGTTTCATCATCCTAACTTACTATGGGATTGCATAAATGAGTTCGTGATGCTAATACCA
1 ACGGGCTATTTCATCATCCTAACTGACTATAGGATTGCATAAATGAGTTCGTAATGCTAATACCA
* * * *
834217 CTTTTCTCTTTTGGTCACGGATGTTCGAATGTCCATGACTCAAGTCTAGACTCGTAAACACC-AA
66 CTTTTCCCTTTTGGTCACAGATGTTCGAATGTCCATGACTCAAGTCTAAACCCGTAAACACCAAA
*
834281 AAAAA-TCAAAATTCTCCTTTATTTTCCTTTCTTCCTTACCGGTAGCAATACTATTACAC
131 AAAAATTCAAAATTCTCCTTTATTTTCCTTTCTTCCTTACCAGTAGCAATACTATTACAC
834340 ATTAAAAAAA
Statistics
Matches: 169, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
201 51 0.30
202 7 0.04
203 111 0.66
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (203 bp):
ACGGGCTATTTCATCATCCTAACTGACTATAGGATTGCATAAATGAGTTCGTAATGCTAATACCA
CTTTTCCCTTTTGGTCACAGATGTTCGAATGTCCATGACTCAAGTCTAAACCCGTAAACACCAAA
AAAAATTCAAAATTCTCCTTTATTTTCCTTTCTTCCTTACCAGTAGCAATACTATTACACCAAAA
AAAAATCG
Found at i:835753 original size:13 final size:13
Alignment explanation
Indices: 835735--835759 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
835725 CATTTTACTA
835735 TGTATCGATACAT
1 TGTATCGATACAT
835748 TGTATCGATACA
1 TGTATCGATACA
835760 ATATCCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:835759 original size:33 final size:33
Alignment explanation
Indices: 835715--835777 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
835705 TTGGGCACAA
* * *
835715 TGTATCAATACATTTTACTATGTATCGATACAT
1 TGTATCAATACAATATACCATGTATCGATACAT
* *
835748 TGTATCGATACAATATCCCATGTATCGATA
1 TGTATCAATACAATATACCATGTATCGATA
835778 TAAAAAGTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.38
Consensus pattern (33 bp):
TGTATCAATACAATATACCATGTATCGATACAT
Found at i:835836 original size:20 final size:20
Alignment explanation
Indices: 835807--835844 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
835797 TATTGCCAGT
835807 TTCATCTATCGATACAATTC
1 TTCATCTATCGATACAATTC
*
835827 TTCATGTATCGATACAAT
1 TTCATCTATCGATACAAT
835845 GTATAGATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (20 bp):
TTCATCTATCGATACAATTC
Found at i:842805 original size:13 final size:13
Alignment explanation
Indices: 842787--842812 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
842777 ACAAACATCC
842787 ATGTATCGATACA
1 ATGTATCGATACA
842800 ATGTATCGATACA
1 ATGTATCGATACA
842813 TTTCGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:842824 original size:20 final size:20
Alignment explanation
Indices: 842799--842836 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
842789 GTATCGATAC
842799 AATGTATCGATACATTTCGT
1 AATGTATCGATACATTTCGT
842819 AATGTATCGATACATTTC
1 AATGTATCGATACATTTC
842837 CTTGGCAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTTCGT
Found at i:842890 original size:19 final size:19
Alignment explanation
Indices: 842866--842928 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
842856 CGATACATTA
842866 TATCGATACAAAACTTATG
1 TATCGATACAAAACTTATG
842885 TATCGATAC---A--T-TG
1 TATCGATACAAAACTTATG
*
842898 TATCGATACAACACTTATG
1 TATCGATACAAAACTTATG
842917 TATCGATACAAA
1 TATCGATACAAA
842929 TCGTTGAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
16 2 0.05
18 1 0.03
19 22 0.59
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (19 bp):
TATCGATACAAAACTTATG
Found at i:842902 original size:32 final size:32
Alignment explanation
Indices: 842856--842926 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
842846 AAGTTCGTTG
842856 CGATACATTATATCGATACAAAACTTATGTAT
1 CGATACATTATATCGATACAAAACTTATGTAT
* *
842888 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTATATCGATACAAAACTTATGTAT
842920 CGATACA
1 CGATACA
842927 AATCGTTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.32
Consensus pattern (32 bp):
CGATACATTATATCGATACAAAACTTATGTAT
Found at i:843795 original size:49 final size:49
Alignment explanation
Indices: 843628--846412 Score: 2514
Period size: 43 Copynumber: 58.7 Consensus size: 49
843618 AAAAGGATGT
* * * *
843628 CAATGTGCTGATTCACGGTCAGC-ATCATTAGACTTAAAGAAGAA--TGC
1 CAATGTGCTGATTCAAGGCCAGCGAT-ATTGGACTTAAAGATGAAGGTGC
* * * * ** *
843675 CAATGCGCTGATTCAAGGCCAACAACATTGGGTTTTAAAGATGACGAAGGCGC
1 CAATGTGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT---GAAGGTGC
* * *
843728 TAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
843777 CAACGTGCTAATTCAAGGCCAGCGACATTGGACATAAAGATGACAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGC
* *
843829 CAATATGCTGATTTAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
843872 CGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
843921 TAGTATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
843970 CAATGTGCTGATTCAAGACCAGCGACATTGGACTT-AA-A-G-A--TGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
844013 CGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
844062 CAATATGCTGATTCAAAGCCAGCGATATTGGACTTAAAG--G-TGTTG-
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
844107 --ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAATGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
844154 CAATATGCTGATTCAAGGCCAGTGATATCGGACTT---G--G-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * **
844197 CAATGCGCTGATTCAAGGCCAGCTACATTAGACTTAAAGACAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
844246 CAATATGCTGATTCAAGGCCAACTATATTGGACTT----A-G-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
844289 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
844338 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
844387 CAATGTGCTGATTCAAGCCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
844436 CAATGTGCTGATTCAA-GCCGAGCAACATTAGACTTAAAGAT----GTG-
1 CAATGTGCTGATTCAAGGCC-AGCGATATTGGACTTAAAGATGAAGGTGC
* * *
844480 -GATGTGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGACAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGC
* *
844531 CAATATGCTGATTTAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
844574 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
844617 CAATGTGCTGATTCAAGGCCAGCTAAATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
844666 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
844709 CAATGTGCTGATTCAAGGCCAAG-TACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCC-AGCGATATTGGACTTAAAGATGAAGGTGC
* *
844758 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-AT----GTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
844801 CAATGTGCTGATTCAAGGCTAGCTACATTAGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
844850 CAATATGCTGATTCAAGGCCAACGATATTGGAC-T-----TGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
844893 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGGTGC
*
844943 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * * *
844986 CAATGTGCTGATTCAGGGCTAGCTACATTGGACTTAAATAATGAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAA-GATGAAGGTGC
*
845036 CAATATGCTGATTCAAGGCCAGCGATATTGGAC-T--A-A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * ** *
845079 CAATGTGCTGATTCTAGGCCAGCTACGTTGGACTTAAAAGATGAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGGTGC
* *
845129 CAATATGCTAATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* ** *
845172 CAATGTGCTGATTCTAGGCCAGCTG-CGTTGGACTTAAAAGATGAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGC-GATATTGGACTT-AAAGATGAAGGTGC
* *
845222 TAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * * *
845265 CAATATGCTGATTCACGGCTAGCTACATTGGACTTAAAAGATGAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGGTGC
* * *
845315 CAATATGCTGATTCAAGGCCAGCAATATTGGA-TT-----TAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
845358 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * *
845407 CAATATGCTGATTCAAGTCTAGTGATATTGGGCTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
845450 CAATGTGCTGATTCGAGGCCAGCTACATTGGACTTAAAGAT-ATAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA-AGGTGC
*
845499 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGGTGC
*
845552 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
845601 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGC
** *
845653 CAAAATGCTGATTCAAGGCCAGCGATATTAGG-CTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGATGAAGGTGC
* * ** * * *
845701 CAATGCGCTAATTCAAGGCCAGTTACATTGGACTTAAAGATGAAGATGA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* ** ** * * ** *
845750 GAA--AACTGATAAAAATGCCAATATGCTGAT-TCATGGCCAACGATATTGGACTTAAAGGTGC
1 CAATGTGCTGAT-TCAAGGCC---A-GC-GATAT--TGG---AC-TTA-AAGA--TGAAGGTGC
* * *
845811 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
845859 CAATATGCTGATTGAAGGCCAGCGATATTAGACTT-AA-A-G-A--TGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
845902 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
845950 CAATATGCTAATTCAAGGCCAGCGATATTGGGCTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * *
845998 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAATGTGG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
846047 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
846095 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
846144 CAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
846192 CAATGTGTTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
846241 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
846284 CAATGTGCTGATTCAAGGCTAGCTACATTGCACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
846327 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGAAGGTGC
* * *
846377 CAATATGCTGATTCAAGGTCAGCGATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
846413 GAAGGGTTGC
Statistics
Matches: 2243, Mismatches: 328, Indels: 332
0.77 0.11 0.11
Matches are distributed among these distances:
43 716 0.32
44 16 0.01
45 17 0.01
46 12 0.01
47 40 0.02
48 266 0.12
49 716 0.32
50 223 0.10
51 6 0.00
52 127 0.06
53 67 0.03
54 4 0.00
56 3 0.00
57 4 0.00
58 5 0.00
59 3 0.00
61 8 0.00
62 5 0.00
63 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
Found at i:843958 original size:92 final size:91
Alignment explanation
Indices: 843628--846417 Score: 2263
Period size: 92 Copynumber: 29.4 Consensus size: 91
843618 AAAAGGATGT
* * * *
843628 CAATGTGCTGATTCACGGTCAGC-ATCATTAGACTTAAAGAAGAATGCCAATGCGCTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGAT-ATTGGACTTAAAG--G--TGCCAATGTGCTGATTCAAG
* * ** *
843692 GCCAACAACATTGGGTTTTAAAGATGACGAAGGCGC
61 GCCAGCTACATT-GGACTTAAAGAT----AAGGTGC
* * * * *
843728 TAATATGCTGATTCAAGGCCAGTGATATTGGACTTAAAGATGAAGGTGCCAACGTGCTAATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAA
* *
843793 GGCCAGCGACATTGGACATAAAGATGACAAAGGTGC
60 GGCCAGCTACATTGGACTTAAAGAT----AAGGTGC
* * *
843829 CAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGGTGCCGATGTGCTGATTCAAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
843894 CTACATTGGACTTAAAGATAAAGGTGC
66 CTACATTGGACTTAAAGAT-AAGGTGC
* * *
843921 TAGTATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAA
* *
843986 GACCAGCGACATTGGACTTAAAG---A--TGC
60 GGCCAGCTACATTGGACTTAAAGATAAGGTGC
* * * *
844013 CGATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAA
* * * * *
844078 AGCCAGCGATATTGGACTTAAAGGT--GTTG-
60 GGCCAGCTACATTGGACTTAAAGATAAGGTGC
* * *
844107 --ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAATGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGAC----T--TAAAGGTGCCAATGTGCTGATTCAA
* * *
844170 GGCCAG-TGATATCGGACTT---G--GAGGTGC
60 GGCCAGCT-ACATTGGACTTAAAGATAAGGTGC
* * * * *
844197 CAATGCGCTGATTCAAGGCCAGCTACATTAGACTTAAAGACAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT------AAAGGTGCCAATGTGCTGATTCAA
* *
844262 GGCCAACTATATTGGACTT--AG---AGGTGC
60 GGCCAGCTACATTGGACTTAAAGATAAGGTGC
* * *
844289 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAA
* *
844354 GGCCAGCGATATTGGACTTAAAGATGAAGGTGC
60 GGCCAGCTACATTGGACTTAAAGAT-AAGGTGC
*
844387 CAATGTGCTGATTCAAGCCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAA
* *
844452 -GCCGAGCAACATTAGACTTAAAGAT---GTG-
60 GGCC-AGCTACATTGGACTTAAAGATAAGGTGC
* * *
844480 -GATGTGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGACAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---AAAGGTGCCAATGTGCTGATT
* * *
844544 TAAGGCCAGCGATATTGGACTT----A-AAGGTGC
57 CAAGGCCAGCTACATTGGACTTAAAGATAAGGTGC
**
844574 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTGCTGATTCAAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
*
844639 CTAAATTGGACTTAAAGATGAAGGTGC
66 CTACATTGGACTTAAAGAT-AAGGTGC
*
844666 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCC-A
844731 G-TACATTGGACTTAAAGATAAAGGTGC
65 GCTACATTGGACTTAAAGAT-AAGGTGC
* * * *
844758 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGTGCCAATGTGCTGATTCAAGGCTAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
*
844823 CTACATTAGACTTAAAGATGAAGGTGC
66 CTACATTGGACTTAAAGAT-AAGGTGC
* * *
844850 CAATATGCTGATTCAAGGCCAACGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
*
844915 CTACATTGGACTTAAAAGATGAGGGTGC
66 CTACATTGGACTT-AAAGAT-AAGGTGC
* * *
844943 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAGGGCTAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
* *
845008 CTACATTGGACTTAAATAATGAGGGTGC
66 CTACATTGGACTTAAA-GAT-AAGGTGC
* * *
845036 CAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAAGGTGCCAATGTGCTGATTCTAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
* *
845101 CTACGTTGGACTTAAAAGATGAGGGTGC
66 CTACATTGGACTT-AAAGAT-AAGGTGC
* * *
845129 CAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCTAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
* * *
845194 CTGCGTTGGACTTAAAAGATGAGGGTGC
66 CTACATTGGACTT-AAAGAT-AAGGTGC
* * * * *
845222 TAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATATGCTGATTCACGGCTAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
*
845287 CTACATTGGACTTAAAAGATGAGGGTGC
66 CTACATTGGACTT-AAAGAT-AAGGTGC
* * *
845315 CAATATGCTGATTCAAGGCCAGCAATATTGGATTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
845380 CTACATTGGACTTAAAGATAAAGGTGC
66 CTACATTGGACTTAAAGAT-AAGGTGC
* * * * * *
845407 CAATATGCTGATTCAAGTCTAGTGATATTGGGCTTAAAGGTGCCAATGTGCTGATTCGAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
845472 CTACATTGGACTTAAAGATATAGGTGC
66 CTACATTGGACTTAAAGATA-AGGTGC
* *
845499 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGTGCCAATATGCTGAT
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T------T---AAAGGTGCCAATGTGCTGAT
* *
845564 TCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
56 TCAAGGCCAGCTACATTGGACTTAAAGAT-AAGGTGC
* * **
845601 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGACAAAATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--G-----TGC--CAATGTGCTGATT
* * * *
845666 CAAGGCCAGCGATATTAGG-CTTAAAGGTGAGGTGC
57 CAAGGCCAGCTACATT-GGACTTAAAGATAAGGTGC
* * ** * * * * **
845701 CAATGCGCTAATTCAAGGCCAGTTACATTGGACTTAAAGATG-AAGATGAGAAAACTGATAAAAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCA-ATGTG----CTGAT-TCAA
* * **
845765 TGCCAATATGCTGATTCA-TGGCCAACGATATTGGACTTAAAGGTGC
60 GGCC---A-GCT-A--CATTGG---AC-TTA-AAGA--T-AAGGTGC
* * * *
845811 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTGAAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAGGTGCCAATGTGCTGATTCAAG
* * *
845876 GCCAGCGATATTAGACTTAAAG---A--TGC
61 GCCAGCTACATTGGACTTAAAGATAAGGTGC
* * * *
845902 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTAATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAGGTGCCAATGTGCTGATTCAAG
* * * * *
845967 GCCAGCGATATTGGGCTTAAAGGTGAGGTGC
61 GCCAGCTACATTGGACTTAAAGATAAGGTGC
* * * *
845998 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAATGTGGCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG------GTGCCAATGTGCTGATTCAA
* * * *
846063 GGCCAGCGATATTGGACTTAAAGGTGAGGTGC
60 GGCCAGCTACATTGGACTTAAAGATAAGGTGC
* * *
846095 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAA
* * * * *
846160 GGCCAGCGATATTGGGCTTAAAGGTGAGGTGC
60 GGCCAGCTACATTGGACTTAAAGATAAGGTGC
* * * *
846192 CAATGTGTTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAA
*
846257 GGCCAGCTATATTGGACTT----A-AAGGTGC
60 GGCCAGCTACATTGGACTTAAAGATAAGGTGC
* * * *
846284 CAATGTGCTGATTCAAGGCTAGCTACATTGCACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
846349 CTACATTGGACTTAAAAGATAAAGGTGC
66 CTACATTGGACTT-AAAGAT-AAGGTGC
* * *
846377 CAATATGCTGATTCAAGGTCAGCGATATTGGGCTTAGAAGG
1 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGG
846418 GTTGCCACCA
Statistics
Matches: 2320, Mismatches: 212, Indels: 322
0.81 0.07 0.11
Matches are distributed among these distances:
86 78 0.03
88 2 0.00
89 5 0.00
90 2 0.00
91 96 0.04
92 776 0.33
93 476 0.21
94 17 0.01
95 115 0.05
96 46 0.02
97 222 0.10
98 122 0.05
99 5 0.00
100 71 0.03
101 95 0.04
102 114 0.05
103 6 0.00
104 4 0.00
105 2 0.00
106 7 0.00
107 2 0.00
109 1 0.00
110 41 0.02
111 5 0.00
114 1 0.00
115 8 0.00
116 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (91 bp):
CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
CTACATTGGACTTAAAGATAAGGTGC
Found at i:845869 original size:48 final size:47
Alignment explanation
Indices: 845765--846412 Score: 680
Period size: 48 Copynumber: 13.8 Consensus size: 47
845755 CTGATAAAAA
* * *
845765 TGCCAATATGCTGATTCATGGCCAACGATATTGGACTT----AAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGG
* *
845808 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGG
* * *
845856 TGCCAATATGCTGATTGAAGGCCAGCGATATTAGACTTAAAG--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGG
* *
845899 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-AAGG
* * * **
845947 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA-GAAAGG
* * *
845995 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAATG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG--AAAGG
* * **
846044 TGGCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA-GAAAGG
* *
846092 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA--AAGG
* * **
846141 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA-GAAAGG
* * *
846189 TGCCAATGTGTTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA--AAGG
* *
846238 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----AAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGG
* * * *
846281 TGCCAATGTGCTGATTCAAGGCTAGCTACATTGCACTT----AAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGG
* *
846324 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AAAG--AAAGG
* * *
846374 TGCCAATATGCTGATTCAAGGTCAGCGATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
846413 GAAGGGTTGC
Statistics
Matches: 510, Mismatches: 69, Indels: 46
0.82 0.11 0.07
Matches are distributed among these distances:
43 149 0.29
45 2 0.00
46 1 0.00
47 4 0.01
48 195 0.38
49 119 0.23
50 40 0.08
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (47 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAAAGG
Found at i:846089 original size:97 final size:95
Alignment explanation
Indices: 845765--846399 Score: 836
Period size: 97 Copynumber: 6.8 Consensus size: 95
845755 CTGATAAAAA
* *
845765 TGCCAATATGCTGATTCATGGCCAACGATATTGGACTT-AA---AGGTGCCAATGTGCTGATTCA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGTGAGGTGCCAATGTGCTGATTCA
* *
845826 AGGCCAGCGACATTGGTCTTAAAGACAAGG
66 AGGCCAGCTACATTGGACTTAAAGACAAGG
* *
845856 TGCCAATATGCTGATTGAAGGCCAGCGATATTAGACTTAAA--GA--TGCCAATGTGCTGATTCA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGTGAGGTGCCAATGTGCTGATTCA
* *
845917 AGGCCAGCGACATTGGTCTTAAAGACAAGG
66 AGGCCAGCTACATTGGACTTAAAGACAAGG
* *
845947 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-GTGAGGTGCCAATGTGCTGATTC
* *
846012 AAGGCCAGCTACATTGGACTTAAAGATAAATG
65 AAGGCCAGCTACATTGGACTTAAAGA-CAAGG
*
846044 TGGCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAGGTGCCAATGTGCTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-GTGAGGTGCCAATGTGCTGATTC
*
846109 AAGGCCAGCTACATTGGACTTAAAGATGAAGG
65 AAGGCCAGCTACATTGGACTTAAAGA-CAAGG
* *
846141 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAGGTGCCAATGTGTTGATTC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-GTGAGGTGCCAATGTGCTGATTC
*
846206 AAGGCCAGCTACATTGGACTTAAAGATGAAGG
65 AAGGCCAGCTACATTGGACTTAAAGA-CAAGG
*
846238 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA---AGGTGCCAATGTGCTGATTCA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGTGAGGTGCCAATGTGCTGATTCA
* *
846299 AGGCTAGCTACATTGCACTT----A-AAGG
66 AGGCCAGCTACATTGGACTTAAAGACAAGG
* * * * *
846324 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATAAAGGTGCCAATATGCTGAT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAG-T-GAGGTGCCAATGTGCTGAT
*
846389 TCAAGGTCAGC
63 TCAAGGCCAGC
846400 GATATTGGGC
Statistics
Matches: 499, Mismatches: 30, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
86 40 0.08
88 3 0.01
91 119 0.24
92 40 0.08
93 27 0.05
94 2 0.00
96 43 0.09
97 225 0.45
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (95 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGTGAGGTGCCAATGTGCTGATTCA
AGGCCAGCTACATTGGACTTAAAGACAAGG
Found at i:846301 original size:21 final size:21
Alignment explanation
Indices: 846277--846344 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
846267 ATTGGACTTA
846277 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* *
846298 AAGGCTAGCTACAT-TGC--ACTTA
1 AAGG-T-GCCA-ATGTGCTGA-TTC
846320 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
846341 AAGG
1 AAGG
846345 CCAGCTACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 12 0.33
22 8 0.22
23 6 0.17
24 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:846407 original size:50 final size:50
Alignment explanation
Indices: 846318--846412 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
846308 ACATTGCACT
* *
846318 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGA
* * *
846368 TAAAGGTGCCAATATGCTGATTCAAGGTCAGCGATATTGGGCTTA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
846413 GAAGGGTTGC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (50 bp):
TAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGA
Found at i:846456 original size:33 final size:32
Alignment explanation
Indices: 846405--846507 Score: 138
Period size: 33 Copynumber: 3.2 Consensus size: 32
846395 TCAGCGATAT
*
846405 TGGGC-TTAGAAG-GGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAGTGGTTGCCACCGACTTGTG
846435 TGGGCTTTAGAGAGTGGTTGCCACCGACTTGTG
1 TGGGCTTTAGA-AGTGGTTGCCACCGACTTGTG
* *
846468 TGGGCTTTAAAAAATGGTTGCCACCGACTTGTG
1 TGGGCTTT-AGAAGTGGTTGCCACCGACTTGTG
*
846501 TTGGCTT
1 TGGGCTT
846508 ACAAGGGTGC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
30 5 0.08
31 5 0.08
32 2 0.03
33 51 0.78
34 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.31
Consensus pattern (32 bp):
TGGGCTTTAGAAGTGGTTGCCACCGACTTGTG
Found at i:846553 original size:35 final size:34
Alignment explanation
Indices: 846514--846847 Score: 188
Period size: 34 Copynumber: 10.5 Consensus size: 34
846504 GCTTACAAGG
* * *
846514 GTGCCACGAAATTGTGGACTTAAAAGGGAAAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAA-GGAAAAAGA
* * *
846549 GTGCCATGGATTTGTGGGCTT-AAATGAAAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGA
* * *
846582 GTGCCACGGAGTGGTGTGCTTTAAAAAGAAAAA-A
1 GTGCCACGGAGTTGTGGGC-TTAAAAGGAAAAAGA
846616 GTGCCACGGAGTTGTGGGCTTAAAA-G-----G-
1 GTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGA
*
846643 GTGCCAC-GAGGTTGTGGACTTAAAAGG-AAAAG-
1 GTGCCACGGA-GTTGTGGGCTTAAAAGGAAAAAGA
* * * *
846675 GTGCCACGGAGTTGTGGACTTTAATAGAAAAAAGG
1 GTGCCACGGAGTTGTGGGC-TTAAAAGGAAAAAGA
* * *
846710 GTGCCATGGAGTCGTGGACTTAAAA-G-----G-
1 GTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGA
846737 GTGCCACGGAGTTGTGGGCCTT------AAAAAGA
1 GTGCCACGGAGTTGTGGG-CTTAAAAGGAAAAAGA
* *
846766 GTGCCACAGAGTTGTGGACATTGAAAA-GAAAAAG-
1 GTGCCACGGAGTTGTGGGC-TT-AAAAGGAAAAAGA
* *
846800 GTGCCACGGAGTTGTGGACTTTAAA-G-AAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGA
* *
846832 -TGCCACTGAGTCGTGG
1 GTGCCACGGAGTTGTGG
846848 ACTTTGAGAC
Statistics
Matches: 243, Mismatches: 28, Indels: 60
0.73 0.08 0.18
Matches are distributed among these distances:
26 2 0.01
27 36 0.15
28 7 0.03
29 18 0.07
31 19 0.08
32 22 0.09
33 39 0.16
34 51 0.21
35 49 0.20
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (34 bp):
GTGCCACGGAGTTGTGGGCTTAAAAGGAAAAAGA
Found at i:846583 original size:33 final size:33
Alignment explanation
Indices: 846514--846847 Score: 219
Period size: 35 Copynumber: 10.5 Consensus size: 33
846504 GCTTACAAGG
* * *
846514 GTGCCACGAAATTGTGGACTTAAAAGGGAAAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAA--GAAAAAGA
* * *
846549 GTGCCATGGATTTGTGGGCTTAAATGAAAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGA
* *
846582 GTGCCACGGAGTGGTGTGCTTTAAAAAGAAAAA-A
1 GTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGA
846616 GTGCCACGGAGTTGTGGGCTTAAAAG-----G-
1 GTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGA
* *
846643 GTGCCAC-GAGGTTGTGGACTTAAAAGGAAAAG-
1 GTGCCACGGA-GTTGTGGGCTTAAAAGAAAAAGA
* * *
846675 GTGCCACGGAGTTGTGGACTTTAATAGAAAAAAGG
1 GTGCCACGGAGTTGTGGGC-TTAAAAG-AAAAAGA
* * *
846710 GTGCCATGGAGTCGTGGACTTAAAAG-----G-
1 GTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGA
846737 GTGCCACGGAGTTGTGGGCCTT-----AAAAAGA
1 GTGCCACGGAGTTGTGGG-CTTAAAAGAAAAAGA
* *
846766 GTGCCACAGAGTTGTGGACATTGAAAAGAAAAAG-
1 GTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGA
* *
846800 GTGCCACGGAGTTGTGGACTTTAAAG-AAAAGA
1 GTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGA
* *
846832 -TGCCACTGAGTCGTGG
1 GTGCCACGGAGTTGTGG
846848 ACTTTGAGAC
Statistics
Matches: 244, Mismatches: 27, Indels: 60
0.74 0.08 0.18
Matches are distributed among these distances:
26 2 0.01
27 37 0.15
28 6 0.02
29 18 0.07
31 19 0.08
32 26 0.11
33 35 0.14
34 49 0.20
35 52 0.21
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.21
Consensus pattern (33 bp):
GTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGA
Found at i:846640 original size:27 final size:27
Alignment explanation
Indices: 846610--846851 Score: 135
Period size: 27 Copynumber: 8.0 Consensus size: 27
846600 CTTTAAAAAG
*
846610 AAAAAAGTGCCACGGAGTTGTGGGCTT
1 AAAAAAGTGCCACGGAGTTGTGGACTT
**
846637 AAAAGGGTGCCAC-GAGGTTGTGGACTT
1 AAAAAAGTGCCACGGA-GTTGTGGACTT
846664 AAAAGGAAAAGGTGCCACGGAGTTGTGGACTTTAAT
1 --AA--AAAA-GTGCCACGGAGTTGTGGAC--T--T
* *
846700 AGAAAAAAGGGTGCCATGGAGTCGTGGACTT
1 --AAAAAA--GTGCCACGGAGTTGTGGACTT
** *
846731 AAAAGGGTGCCACGGAGTTGTGGGCCTT
1 AAAAAAGTGCCACGGAGTTGT-GGACTT
*
846759 AAAAAGAGTGCCACAGAGTTGTGGACATT
1 AAAAA-AGTGCCACGGAGTTGTGGAC-TT
846788 GAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTT
1 ----A-AAAAA-GTGCCACGGAGTTGTGGAC-TT
* *
846822 AAAGAAAAGATGCCACTGAGTCGTGGACTT
1 -AA-AAAAG-TGCCACGGAGTTGTGGACTT
846852 TGAGACAAAA
Statistics
Matches: 171, Mismatches: 21, Indels: 43
0.73 0.09 0.18
Matches are distributed among these distances:
26 2 0.01
27 34 0.20
28 12 0.07
29 22 0.13
30 4 0.02
31 25 0.15
32 16 0.09
33 5 0.03
34 29 0.17
35 18 0.11
36 4 0.02
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (27 bp):
AAAAAAGTGCCACGGAGTTGTGGACTT
Found at i:846648 original size:94 final size:92
Alignment explanation
Indices: 846543--846825 Score: 308
Period size: 94 Copynumber: 3.1 Consensus size: 92
846533 TTAAAAGGGA
* * *
846543 AAAAGAGTGCCATGGATTTGTGGGCTTAAATGAAAAAGAGTGCCACGGAGTGGTGTG-CTTTAAA
1 AAAAGGGTGCCA-GGAGTTGTGGGCTTAAATGAAAAAGAGTGCCACGGAGTTGTG-GACTTT-AA
*
846607 AAGAAAAAAGTGCCACGGAGTTGTGGGCTT
63 AAGAAAAAAGTGCCACGGAGTTGTGGACTT
* * * * *
846637 AAAAGGGTGCCACGAGGTTGTGGACTTAAAAGGAAAAG-GTGCCACGGAGTTGTGGACTTTAATA
1 AAAAGGGTGCCAGGA-GTTGTGGGCTTAAATGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAA
* *
846701 GAAAAAAGGGTGCCATGGAGTCGTGGACTT
65 GAAAAAA--GTGCCACGGAGTTGTGGACTT
* * *
846731 AAAAGGGTGCCACGGAGTTGTGGGCCT---T-AAAAAGAGTGCCACAGAGTTGTGGACATTGAAA
1 AAAAGGGTGCCA-GGAGTTGTGGGCTTAAATGAAAAAGAGTGCCACGGAGTTGTGGAC-TTTAAA
*
846792 AGAAAAAGGTGCCACGGAGTTGTGGACTT
64 AGAAAAAAGTGCCACGGAGTTGTGGACTT
*
846821 TAAAG
1 AAAAG
846826 AAAAGATGCC
Statistics
Matches: 159, Mismatches: 23, Indels: 18
0.80 0.12 0.09
Matches are distributed among these distances:
90 28 0.18
91 18 0.11
92 22 0.14
93 21 0.13
94 68 0.43
95 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.22
Consensus pattern (92 bp):
AAAAGGGTGCCAGGAGTTGTGGGCTTAAATGAAAAAGAGTGCCACGGAGTTGTGGACTTTAAAAG
AAAAAAGTGCCACGGAGTTGTGGACTT
Found at i:846792 original size:29 final size:27
Alignment explanation
Indices: 846704--846826 Score: 102
Period size: 29 Copynumber: 4.2 Consensus size: 27
846694 TTTAATAGAA
* * *
846704 AAAAGGGTGCCATGGAGTCGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
* *
846731 AAAAGGGTGCCACGGAGTTGTGGGCCTT
1 AAAAGAGTGCCACGGAGTTGT-GGACTT
*
846759 AAAAAGAGTGCCACAGAGTTGTGGACATT
1 -AAAAGAGTGCCACGGAGTTGTGGAC-TT
846788 GAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 -AAAAG----A-GTGCCACGGAGTTGTGGACTT
*
846821 TAAAGA
1 AAAAGA
846827 AAAGATGCCA
Statistics
Matches: 79, Mismatches: 9, Indels: 15
0.77 0.09 0.15
Matches are distributed among these distances:
27 19 0.24
28 9 0.11
29 26 0.33
32 4 0.05
33 3 0.04
34 18 0.23
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (27 bp):
AAAAGAGTGCCACGGAGTTGTGGACTT
Found at i:846812 original size:34 final size:33
Alignment explanation
Indices: 846759--846851 Score: 109
Period size: 31 Copynumber: 2.8 Consensus size: 33
846749 TGTGGGCCTT
846759 AAAAAGAGTGCCACAGAGTTGTGGACATTGAAAAG
1 AAAAAG-GTGCCACAGAGTTGTGGAC-TTGAAAAG
* *
846794 AAAAAGGTGCCACGGAGTTGTGGACTT-TAAAG
1 AAAAAGGTGCCACAGAGTTGTGGACTTGAAAAG
* * *
846826 -AAAAGATGCCACTGAGTCGTGGACTT
1 AAAAAGGTGCCACAGAGTTGTGGACTT
846852 TGAGACAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
31 23 0.43
32 4 0.08
33 2 0.04
34 18 0.34
35 6 0.11
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (33 bp):
AAAAAGGTGCCACAGAGTTGTGGACTTGAAAAG
Found at i:846848 original size:121 final size:120
Alignment explanation
Indices: 846616--846851 Score: 347
Period size: 121 Copynumber: 1.9 Consensus size: 120
846606 AAAGAAAAAA
* *
846616 GTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGAGGTTGTGGACTTAAAAGGAAAAGGTGCCA
1 GTGCCACGGAGTTGTGGGCTTAAAAGAGTGCCACGAGGTTGTGGACTTAAAAGAAAAAGGTGCCA
*
846681 CGGAGTTGTGGACTTTAATAGAAAAAAGGGTGCCATGGAGTCGTGGACTTAAAAGG
66 CGGAGTTGTGGACTTTAATAG-AAAAAGGATGCCATGGAGTCGTGGACTTAAAAGG
846737 GTGCCACGGAGTTGTGGGCCTTAAAAAGAGTGCCAC-AGAGTTGTGGACATTGAAAAGAAAAAGG
1 GTGCCACGGAGTTGTGGG-CTT-AAAAGAGTGCCACGAG-GTTGTGGAC-TT-AAAAGAAAAAGG
846801 TGCCACGGAGTTGTGGACTTTAA-AG-AAAA-GATGCCACT-GAGTCGTGGACTT
61 TGCCACGGAGTTGTGGACTTTAATAGAAAAAGGATGCCA-TGGAGTCGTGGACTT
846852 TGAGACAAAA
Statistics
Matches: 106, Mismatches: 3, Indels: 12
0.88 0.02 0.10
Matches are distributed among these distances:
121 37 0.35
122 10 0.09
123 21 0.20
124 4 0.04
125 34 0.32
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (120 bp):
GTGCCACGGAGTTGTGGGCTTAAAAGAGTGCCACGAGGTTGTGGACTTAAAAGAAAAAGGTGCCA
CGGAGTTGTGGACTTTAATAGAAAAAGGATGCCATGGAGTCGTGGACTTAAAAGG
Found at i:846869 original size:30 final size:31
Alignment explanation
Indices: 846802--846884 Score: 107
Period size: 30 Copynumber: 2.7 Consensus size: 31
846792 AGAAAAAGGT
* * *
846802 GCCACGGAGTTGTGGACTTTAAAGAAAAGAT
1 GCCACTGAGTCGTGGACTTTAAAGAAAAGAC
*
846833 GCCACTGAGTCGTGGACTTT-GAGACAAA-AC
1 GCCACTGAGTCGTGGACTTTAAAGA-AAAGAC
846863 GCCACTGAGTCGTGGACTTTAA
1 GCCACTGAGTCGTGGACTTTAA
846885 GAAGGTATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
30 24 0.53
31 21 0.47
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (31 bp):
GCCACTGAGTCGTGGACTTTAAAGAAAAGAC
Found at i:855080 original size:20 final size:19
Alignment explanation
Indices: 855025--855080 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
855015 AAAACCCTTA
*
855025 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
855045 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
855065 AATGTATCGATACATG
1 AAAGTATCGATACATG
855081 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:855169 original size:13 final size:13
Alignment explanation
Indices: 855151--855176 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
855141 ACACCAAAGT
855151 ATGTATCGATACA
1 ATGTATCGATACA
855164 ATGTATCGATACA
1 ATGTATCGATACA
855177 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:861933 original size:52 final size:52
Alignment explanation
Indices: 861863--862003 Score: 228
Period size: 52 Copynumber: 2.7 Consensus size: 52
861853 GAAAATTTAT
861863 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
861915 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
*** *
861967 CTGCATGTATCGATACAAAGATTAGTGTATCGATACA
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACA
862004 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:862010 original size:13 final size:13
Alignment explanation
Indices: 861992--862016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
861982 CAAAGATTAG
861992 TGTATCGATACAA
1 TGTATCGATACAA
862005 TGTATCGATACA
1 TGTATCGATACA
862017 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:862099 original size:13 final size:13
Alignment explanation
Indices: 862081--862105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
862071 CAAAAAAATA
862081 TGTATCGATACAT
1 TGTATCGATACAT
862094 TGTATCGATACA
1 TGTATCGATACA
862106 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:862101 original size:33 final size:33
Alignment explanation
Indices: 862059--862125 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
862049 AGTAGCTTAA
862059 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
862092 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
862125 A
1 A
862126 GATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:862921 original size:15 final size:15
Alignment explanation
Indices: 862903--862932 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
862893 CAAATTGAGG
862903 AAGCTCAAAATGAAA
1 AAGCTCAAAATGAAA
*
862918 AAGCTCCAAATGAAA
1 AAGCTCAAAATGAAA
862933 TCGATGAACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (15 bp):
AAGCTCAAAATGAAA
Done.