Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold830
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64357
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Found at i:2655 original size:474 final size:477
Alignment explanation
Indices: 1340--2655 Score: 1587
Period size: 474 Copynumber: 2.8 Consensus size: 477
1330 GTTGTCATCA
*
1340 TTTATGGTGCCTAATCCTGAAAAGAA-TGGAGATTAGTGTGAGTACTCATGTT-TGTCTTATTTA
1 TTTATGGTGCCTAATCCTGAAAAGAATTGG-GATTAGTGTGAGTATTCATGTTGT-TCTTATTTA
* *
1403 AGAGACAAACTTTTGATTCTATCAAAAAAGGC-AGGAAGA-AAAGCATTTCTTACGACACCAAAG
64 AAAGACAAAC-TTTGATTCTATCAAAAATGGCGA-GAAGAGAAAGCATTTCTTA-GACACCAAAG
* * * * *
1466 CAT-AGATGTCGTGTGTCCTAACGAAAGAAATGTGCTTTGGATTTCCAATCTTGAAAAGAATAGG
126 CATCA-ATGTCGTGTATCCTAACGAAGGAAATGTGTTTTGGCTTTCTAATCTTGAAAAGAA-AGG
* * *
1530 -GACTATT-GCGAGAATCGATGCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTG
189 AGACTGTTAG-GAGAATCGATGCTTGTCTTATTCAAGAGATGAACTTTGATTTTAAGGATAATTG
* *
1593 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTA--CTAATGCGGAGAATCT
253 GGCAAAGAAAA-ATTTCCATGC-AAAGAAAAACATCAATGTCATTTATCCTAATGCGGAGAATGT
* ** * * * *
1656 ATCTATAGTGCCTGGTCACAAAAAGAATG-AGATCTTTACTAGAATCTA-AGTTTGTCTCATTTG
316 ATTTATAGTGCCTTATCACAAAAAAAAGGAAGATCATTACTAGAATCCATAGTTTGTCTCATTTG
* * * * * *
1719 AGGCACGAACTTAGAATTTACAAAAATTTTGAAAGAAGAAAGACTTTGTTGCAAAACCAAGCTCC
381 AGGCACGAACATAGAACTTACAAAAATTTGGAAAGAAGAAAGACCTTGTTGCAAAACCAAGATCA
* *
1784 TAAATACCGTGTATCCTAATGAGAAGAGTAAG
446 TAAATACCGTGTATCCGAATGAGAAGAGCAAG
* * * *
1816 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTGGTCTTACTTAAC
1 TTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTGTGAGTATTCATGTTGTTCTTATTTAAA
* * *
1881 AGACAAATTTTGATTCTATCAAAAATGGTGAG-A-AGAAAGCATTTCTTGAGACACCCAAGCATC
66 AGACAAACTTTGATTCTATCAAAAATGGCGAGAAGAGAAAGCATTTCTT-AGACACCAAAGCATC
* * * * * * * *
1944 AATGTCATGTATCCTAATGAAGGTAGTTTTTTTTGGCTTCCTAATCTTGAAAAGAATGGAGACTG
130 AATGTCGTGTATCCTAACGAAGGAAATGTGTTTTGGCTTTCTAATCTTGAAAAGAAAGGAGACTG
* *
2009 TTACGAGAATCAATGCTTGTCTTATTCAAGAGATGAACTTTGATTTTAAGGATAATTGGGCAAAG
195 TTAGGAGAATCGATGCTTGTCTTATTCAAGAGATGAACTTTGATTTTAAGGATAATTGGGCAAAG
* *
2074 AAAGATTTCCATGGCAAAG-AAAATATCAATGTCATTTATCCTAATGCGGAGAATGTATTTATAG
260 AAAAATTTCCAT-GCAAAGAAAAACATCAATGTCATTTATCCTAATGCGGAGAATGTATTTATAG
* * ** * * * *
2138 TACCCTATCACAAAAAGATTGAAATATCATTACAAGAATCCATA-TTTGTCTCATTTGTGGCACG
324 TGCCTTATCACAAAAA-AAAGGAAGATCATTACTAGAATCCATAGTTTGTCTCATTTGAGGCACG
* * * * *
2202 GACATAGACCTTAC-AAAA-TTGGAAAG-AGAATGCCCTTGTTGCAAAACCAA-ATCATCATATA
388 AACATAGAACTTACAAAAATTTGGAAAGAAGAAAGACCTTGTTGCAAAACCAAGATCAT-AAATA
*
2263 TCGTGTATCCGAATGAGAAGA-CAATG
452 CCGTGTATCCGAATGAGAAGAGCAA-G
* *
2289 TTTATGGTGCCTAATCCT-AAAAGGAATTGGGATTAGTATGAGTATTCATATTGTTCTTATTTAA
1 TTTATGGTGCCTAATCCTGAAAA-GAATTGGGATTAGTGTGAGTATTCATGTTGTTCTTATTTAA
*
2353 AAGACAAACTTTGATTCTATCAAAAATGGCGAGAAGAGAAAGCTTTTCTTCAGACA-CAAAGCAT
65 AAGACAAACTTTGATTCTATCAAAAATGGCGAGAAGAGAAAGCATTTCTT-AGACACCAAAGCAT
* * * *
2417 CAATGTCGTGTATCCTAACGATGGCAATGTGTTTTGGCTTTGTAATCTTGAAAAGAACGGAGACT
129 CAATGTCGTGTATCCTAACGAAGGAAATGTGTTTTGGCTTTCTAATCTTGAAAAGAAAGGAGACT
* * * * **
2482 GTTAGGAGAATCGACGCTTGTCTTATTCAAGCGATGAACTTTCATTTTAAGGAAAATCAGGCAAA
194 GTTAGGAGAATCGATGCTTGTCTTATTCAAGAGATGAACTTTGATTTTAAGGATAATTGGGCAAA
** * * *
2547 GAAAAATTTCCATGCATAAGAAAAACATCAATGTGTTTTATCCGAATGAGGAGAATGTGTTTATA
259 GAAAAATTTCCATGCA-AAGAAAAACATCAATGTCATTTATCCTAATGCGGAGAATGTATTTATA
* *
2612 GTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGGATCCATA
323 GTGCCTTATCACAAAAAAAAGGAAGATCATTACTAGAATCCATA
2656 ATTGGTGGGA
Statistics
Matches: 714, Mismatches: 105, Indels: 44
0.83 0.12 0.05
Matches are distributed among these distances:
472 26 0.04
473 147 0.21
474 334 0.47
475 96 0.13
476 108 0.15
477 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (477 bp):
TTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTGTGAGTATTCATGTTGTTCTTATTTAAA
AGACAAACTTTGATTCTATCAAAAATGGCGAGAAGAGAAAGCATTTCTTAGACACCAAAGCATCA
ATGTCGTGTATCCTAACGAAGGAAATGTGTTTTGGCTTTCTAATCTTGAAAAGAAAGGAGACTGT
TAGGAGAATCGATGCTTGTCTTATTCAAGAGATGAACTTTGATTTTAAGGATAATTGGGCAAAGA
AAAATTTCCATGCAAAGAAAAACATCAATGTCATTTATCCTAATGCGGAGAATGTATTTATAGTG
CCTTATCACAAAAAAAAGGAAGATCATTACTAGAATCCATAGTTTGTCTCATTTGAGGCACGAAC
ATAGAACTTACAAAAATTTGGAAAGAAGAAAGACCTTGTTGCAAAACCAAGATCATAAATACCGT
GTATCCGAATGAGAAGAGCAAG
Found at i:3064 original size:445 final size:443
Alignment explanation
Indices: 2223--6867 Score: 1691
Period size: 476 Copynumber: 10.0 Consensus size: 443
2213 TACAAAATTG
*
2223 GAAAGAGAATGCCCTTGTTGCAAAACCAAATCATCATATATCGTGTATCCGAATGAGAAGACAAT
1 GAAAGAGAATGCCCTTGTTGCAAAACCAAAGCATCATATATCGTGTATCCGAATGAGAAGACAAT
*
2288 GTTTATGGTGCCTAATCCTAAAAGGAATTGGGATTAGTATGAGTATTCATATTGTTCTTATTTAA
66 GTTTATGGTGCCTAATCCTAAAAGAAATTGGGATTAGTATGAGTATTCATATTGTTCTTATTTAA
* *
2353 AAGACAAACTTTGATTCTATCAAAAATGGCGAGAAGAGAAAGCTTTTCTTCAGACACAAAGCATC
131 AAGACAAACTTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGCTTTTCTTCAGACACAAAGCATC
* * ***
2418 AATGTCGTGTATCCTAACGATGGCAATGTGTTTTGGCTTTGTAATCTTGAAAAGAACGGAGACTG
196 AATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAAAAGAACGGAGACTG
* * * *
2483 TTAGGAGAATCGACGCTTGTCTTATTCAAGCGATGAACTTTCATTTTAAGGAAAATCAGGCAAAG
261 CTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACATTCATTTTAAGGAAAA-CAGGCAAAG
* **
2548 AAAAATTTCCATGCATAAGAAAAACATCAATGTGTTTTATCCGAATGAGGAGAATGTGTTTATAG
325 AAAAATTTCCATGCATAAAAAAAACATCAATGTCATTTATCCGAATGAGGAGAATGTGTTTATAG
*
2613 TGCCTTAACACAAAAAAAAGGAAGATCATTACTAGGATCCATAATTGGTGGGAA
390 TGCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATCCATAATTGGTGGGAA
* * * *
2667 GAAAGA-AA-GCCCTTTGTTGCAAAGCCCAGAGCATCA-ATATCGTGTATCCTAATGAGAAGACT
1 GAAAGAGAATGCCC-TTGTTGCAAA-ACCAAAGCATCATATATCGTGTATCCGAATGAGAAGACA
* * * * *
2729 ATGTTTATGGTGCTTAATCCTAAAA-AAATTGGGGGTTGGTATGGGTATTCATGTT-TGTCTTAT
64 ATGTTTATGGTGCCTAATCCTAAAAGAAATT-GGGATTAGTATGAGTATTCATATTGT-TCTTAT
* * ** * *
2792 TT-AGAGACAAACTTTGATTCTACCAAAAAGGGCGAGAGGA-AAAGCTTTTCTTGGGGCATATTA
127 TTAAAAGACAAACTTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGCTTTTCTT-CAG-ACA-CA
* * * * *
2855 AAGCATTAATGTCTTGTATCCTAATGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAAATGAATG
189 AAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAAAAGAA-C
* * * * * * *
2920 GGGGACTGCTATGAGAATCGATGTTTATCATATTCAAGGGATGATCATTGATTTTAAGGAAAA-A
253 GGAGACTGCTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACATTCATTTTAAGGAAAACA
* * * *
2984 GGGCAAGGAAAAGATTTCCATGCA-AAAAAAAATCATCAATGTCATTTATCCTATTGAGGAGATT
318 -GGCAAAGAAAA-ATTTCCATGCATAAAAAAAA-CATCAATGTCATTTATCCGAATGAGGAGAAT
* * * * ** *** *
3048 GTGTTTATCA-TGCCTTATCACAAAAAAAATGAATATCATTACTAGAATCCAT-GTTTCTATCAT
380 GTGTTTAT-AGTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATCCATAATTGGTGGGAA
*** * * * * * * * * * * * ** *
3111 TTGAG-GCATGAACCTAGACTT-TACAA-CAATTG-GTGGGATGAAAGCCTTTGT-TGCAAAATC
1 GAAAGAGAATG-CCCTTG--TTGCAAAACCAA-AGCAT--CAT-ATA-TC-GTGTAT-CCGAATG
*** * * * *
3171 A-AAG-C-ATCAATATCGTG--T-ATCCTAATGAGAAGACT---ATTAGTATGAGTATTCATGTT
56 AGAAGACAATGTTTATGGTGCCTAATCCTAA-AAGAA-ATTGGGATTAGTATGAGTATTCATATT
* * ** * * * * * *
3227 -TGGCTAATTTAAGGGACAAACTTTGATTCTATCAAAAACGTCGGGAAGA-AAATCTTTTCTTGA
119 GT-TCTTATTTAAAAGACAAACTTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGCTTTTCTTCA
* * * *
3290 GACACCCAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAA
183 GACA-CAAAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAA
* * * ** * * * * * * *
3355 AGGAATGGAGACTGTTACCAGAATCGATGCTTGTCTTATTCAGGGGATGAACTTTGATTTTAAGG
247 AAGAACGGAGACTGCTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACATTCATTTTAAGG
*** * * * * * *
3420 AAATTGGGCAAAGAAAGATTTTCATGCA-AAAGAAAATCATCAATGTCTTTTATCCTAATGTGGA
312 AAAACAGGCAAAGAAAAATTTCCATGCATAAA-AAAAACATCAATGTCATTTATCCGAATGAGGA
* * * *
3484 GAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
376 GAATGTGTTTATAGTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATCCA--------TA
*
3549 ATTTGTGGCACGAACATA
433 ATTGGTGG---G---A-A
** * *
3567 GACTTTACAAAAATTGGAAAGAA-GAAAGCCTTTGTTGCGAAACCAAAGCCTCA-ATATCGTGTA
1 G---------AAA---G--AGAATG--CC-C-TTGTTGCAAAACCAAAGCATCATATATCGTGTA
* * * * *
3630 TCCTAACGAGAAGACTATGTTTATGG-GCCCTAATCCAGAAAAG-AATTGGGATTAGTGT-ATGT
48 TCCGAATGAGAAGACAATGTTTATGGTG-CCTAATCC-TAAAAGAAATTGGGATTAGTATGA-GT
* * * *
3692 ATTCATGTT-TGTCTTATTTAAGAGACAAACTTTTGATTCTATCAAAAAGGGCAAGAAGA-AAAG
110 ATTCATATTGT-TCTTATTTAAAAGACAAAC-TTTGATTCTACCAAAAAGGGCGAGAAGAGAAAG
* * *
3755 CTTTTCTTGC-GACACCAAAGCATCAATGTCGTGTGTCCTAACGAAGGCAATGTGATTTGGCTTC
173 CTTTTCTT-CAGACA-CAAAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTC
* ** ** * * * * * *
3819 CCAATCTTGAAATGAATTGAGACTATTATGAGAATCGATGCTTCTCTTATTCAAGAGATGAACTT
236 CCAATCTTGAAAAGAACGGAGACTGCTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACAT
* ** * * *
3884 TGATTTTAA-GAATAATTGGGCAAAGAAAAGATTTCCATGCA-AAAGAAAATCATGAATGTCGTT
301 TCATTTTAAGGAA-AA-CAGGCAAAGAAAA-ATTTCCATGCATAAA-AAAAACATCAATGTCATT
* * * * * * * * * *
3947 TATCCTAATGCGGAGAAATGTGCTTATAGTACCGTATCACAAAAAGAATGAAGAT-AATACAAGA
362 TATCCGAATGAGGAG-AATGTGTTTATAGTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGA
*
4011 ATCCATATTTGTCTCATTTGGGGCACGAACAGAGAGTTTAAAAAAA
426 ATCCATA--------A-TT---G---G---TG-G-G--------AA
* * * *
4057 TTGGAAAGAAGAATGCCTTTCTTGCAAAACCAAAGCATCAAATATCGTGTATTCGAATGAGAAGA
1 ---GAAAG-AGAATGCCCTTGTTGCAAAACCAAAGCATCATATATCGTGTATCCGAATGAGAAGA
4122 CAATGTTTATGGTGCCTAATCCTAAAA-AGAATTGGGATTAGTATGAGTATTCATATT-TGTCTT
62 CAATGTTTATGGTGCCTAATCCTAAAAGA-AATTGGGATTAGTATGAGTATTCATATTGT-TCTT
* * * *
4185 ATTTAAAAGACAAACTTTGATTCTATCAAAAATGGCGGGAAGA-AAAGCTTTTCTTTAGACACCA
125 ATTTAAAAGACAAACTTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGCTTTTCTTCAGACA-CA
* * * * * *
4249 AAGCATCAATGTCGTGAATCCTAATGATGGCAACATG-TTTGGCTTGCTAATCTTG-AAAGAACG
189 AAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAAAAGAACG
** * * * * * ***
4312 GAGACTATTAAGAGAATCGATGCTTGTCTTATTCAAGGGATGAACATTCATTTTAAGGATAATTG
254 GAGACTGCTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACATTCATTTTAAGGA-AAACA
* * * * * *
4377 GGC-AAGAAAAAATTTCTATGCA-AAAGAAAATCGTCAATGTCATTTACCCTAATGTGGAGAATG
318 GGCAAAG-AAAAATTTCCATGCATAAA-AAAAACATCAATGTCATTTATCCGAATGAGGAGAATG
** * *
4440 TGTTTATAGTGCCTTAGTACAAAAAAAATGAAGATCATTACTAGAATCTATATTTGTCTCATTTG
381 TGTTTATAGTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATCCATA--------A-TTG
4505 G-GGCACGAACTTA
437 GTGG---G-A---A
** * * * *
4518 GAATTTATAAAAATTGGAAAGAA-GAAAGTCTTTGTTGCGAGACCAAAGCATCA-ATATCATGCA
1 G---------AAA---G--AGAATG--CC-C-TTGTTGCAAAACCAAAGCATCATATATCGTGTA
* * * * * * *
4581 TCCTAAAGAGAAGACTAGGTTTATGGTGCCTAATCCTGAAAA-CAATGGGGATTAGTGTGAGTAT
48 TCCGAATGAGAAGACAATGTTTATGGTGCCTAATCCT-AAAAGAAATTGGGATTAGTATGAGTAT
* * ** * *
4645 TCACGT-TTG-ACTTATTTAAGAGACAAACTTTTGATTCTATTAATAAGGGCAAGAAGA-AAAGC
112 TCA--TATTGTTCTTATTTAAAAGACAAAC-TTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGC
* * * * *
4707 TTTTCTTGC-GACACCAAAGCATCAATGTCATGTGTCTTAACGAAGGCAATGTTTTTTGGCTTCC
174 TTTTCTT-CAGACA-CAAAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCC
* * * * * * * * * * * *
4771 CAATCTTGAAATGGATGGAGACTGTTATGAGATTCGATGCTTATCTTATTTAGGGGATGAACTTT
237 CAATCTTGAAAAGAACGGAGACTGCTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACATT
* *** * * *
4836 GATTTTAAGGATAATTGGGC-AAGACAAAGTTTCCATGCA-AAAGAAAATCGTCAATGTCATTTA
302 CATTTTAAGGA-AAACAGGCAAAGA-AAAATTTCCATGCATAAA-AAAAACATCAATGTCATTTA
* * * * * * *
4899 CCCTAATGCGGAGACTGTGTTTATAGTGCCCTATTACA-AAAAAAAATGAAGATCATTACCAGAA
364 TCCGAATGAGGAGAATGTGTTTATAGTG-CCT-TAACACAAAAAAAAGGAAGATCATTACTAGAA
* * * *
4963 TCTATGTTTGTCTCATTTGAGGCACGAACTTA
427 TCCA--------TAATTGGTGG---G-A---A
** *
4995 GAATTTACAAAAATTGGAAAGAA-GAAAGCCTTTGTTGCAAAACCAAAGCATCA-ATAACGTGTA
1 G---------AAA---G--AGAATG--CC-C-TTGTTGCAAAACCAAAGCATCATATATCGTGTA
* * * * * * * *
5058 TCCTAATGAAAAGACTATGTTTACGGTGCCTAATCTTAAAA-AGAATAGGGATTAGTGTGAGCAT
48 TCCGAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAGA-AATTGGGATTAGTATGAGTAT
* * * * *
5122 TCATGTT-TATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-AGGAAGA-AAAGCT
112 TCATATTGT-TCTTATTTAAAAGACAAACTTTGATTCTACCAAAAAGGGCGA-GAAGAGAAAGCT
** * * *
5184 TTTCTTGTGACACTAAAGCATCAATGTCATGTGTCCTAACGAAGGCAATGTGTTTTGGCTTCCCA
175 TTTCTTCAGACAC-AAAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCA
* * * * * * * *
5249 ATCTTGAAATGAACGGAGACTGTTATGAGAATCGATGCTTCA-CCTATTCAAGGGATGAACTTTG
239 ATCTTGAAAAGAACGGAGACTGCTAGGAGAATCGACGCTT-ATCATATTCAAGCGATGAACATTC
* * **
5313 ATTTTAAGGATAACTGGGCAAAGAAAAGATTTCCATGCA-AAAGAAAGTCATCAATGTCATTTAT
303 ATTTTAAGGAAAAC-AGGCAAAGAAAA-ATTTCCATGCATAAA-AAAAACATCAATGTCATTTAT
* * * * * * * *
5377 CCTAATGCGAAAAATGTGTTTATAGTGCCTTATCAC-AAAAAAATGAAGATTATTACTAGAATCT
365 CCGAATGAGGAGAATGTGTTTATAGTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATCC
* * *
5441 ATGTTTGTCTCATTTGAGGCACGAACTTA
430 A--------TAATTGGTGG---G-A---A
** * * * *
5470 GAATTTACAAAAATTGGAAAGAA-GAAAGACTCTATTGCGAAACGAAAGCCTCA-ATATCGTGTA
1 G---------AAA---G--AGAATG--CC-CT-TGTTGCAAAACCAAAGCATCATATATCGTGTA
* * * ** * *
5533 TCCTAATAAGAATAGTATGTTTATGGTGCCTAATCCTAAAA-AGAATGGGGATTAGTGTGAGTAT
48 TCCGAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAGA-AATTGGGATTAGTATGAGTAT
* * * * * * * *
5597 TTATGTT-TGGCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGCAAGAAGA-AAAGCTT
112 TCATATTGT-TCTTATTTAAAAGACAAACTTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGCTT
* * * ** * *
5660 TTCTTGAGACACCCAAGCATCAATGTCATGTATCCTAATTAAGGCAATGAGTTTTGGCTTCCCAA
176 TTCTTCAGACA-CAAAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCAA
* * * * * * * * * *
5725 TCCTGAAAAGAATGGAGACTGATACGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTGAT
240 TCTTGAAAAGAACGGAGACTGCTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACATTCAT
*** * **
5790 TTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCA-AAAGAAAATCATCAACATCATTTATCC
305 TTTAAGGA-AAACAGGCAAAGAAAA-ATTTCCATGCATAAA-AAAAACATCAATGTCATTTATCC
* * * * ** * * * * *
5854 TAATGCGGAGAATCTTTTTATAGTGCCTTATTAGAAAAAGAATGACGATCATTACAAGAATCCAT
367 GAATGAGGAGAATGTGTTTATAGTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATCCAT
* * *
5919 ATTTGTCTCATTTGAGGTAC
432 AATTG------GTG-GG-AA
*** * ** * * * *
5939 GAACTTAGACTTTTCAATAATTGGTGGAAAAAAGCCTTTGTTGTGAAATCAAAGCATCAATATCG
1 GAA---AGAGAATGC---CCTT-GTTG-CAAAA-CC---------AAAGC--ATCAT--ATATCG
* * * * * * * * *
6004 TATATCCTAATGACAAGTCTATGTTTATGGTGCCTGATCCTGAAAAG-AA-TGGATATTATTGTG
44 TGTATCCGAATGAGAAGACAATGTTTATGGTGCCTAATCCT-AAAAGAAATTGG-GATTAGTATG
* * * * *
6067 AGTGTTCA-AGTT-TGTCTTATTTTAGAGACAAACTTTTGATTCTATCAAAAAGGG-TAGGAAGA
107 AGTATTCATA-TTGT-TCTTATTTAAAAGACAAAC-TTTGATTCTACCAAAAAGGGCGA-GAAGA
* * * *
6129 -AAAGCTTTTCTTGC-GACACTAAAGCATCAATGTCTTGTGTCCTAACGAAGGCAATGCGTTTTG
168 GAAAGCTTTTCTT-CAGACAC-AAAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTG
* * * * * * * *
6192 GCTTCCCAACCTTGAAAAGAATC-GAGACTG-TTGCGGGAATCGATGCTTTTCTTATTCAGGGGA
231 GCTTCCCAATCTTGAAAAGAA-CGGAGACTGCTAG-GAGAATCGACGCTTATCATATTCAAGCGA
* * *** *
6255 TGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCA-AAAGAAAATCATCAAT
294 TGAACATTCATTTTAAGGA-AAACAGGCAAAGAAAA-ATTTCCATGCATAAA-AAAAACATCAAT
* * * * * * * * *
6319 GTCATTTACCCTAATGCGGAGAATCTATTTATAGTGCCTCATCACAAAAAGAATGAAGATCATTA
356 GTCATTTATCCGAATGAGGAGAATGTGTTTATAGTGCCTTAACACAAAAAAAAGGAAGATCATTA
* * * * *
6384 CTAGGCTCTAGGTTTGTCTTATTTGAGGTACGAACATAGAATTTACAAAAA
421 CTA-G----A---AT-CCATAATT--GGT--G------G---------GAA
* ** ** *
6435 TTGGAAAGAAGAAAG-CCTCTGTTGTGATTCCAAAGCATCAT-TATCGTGTATCCTAATGAGAAG
1 ---GAAAG-AGAATGCCCT-TGTTGCAAAACCAAAGCATCATATATCGTGTATCCGAATGAGAAG
* * **
6498 ACTATGTTTACGGTGCCTAATCCTGAAAAG-AATAAGGATTAGTATGAGTATTCATATT-TGTCT
61 ACAATGTTTATGGTGCCTAATCCT-AAAAGAAATTGGGATTAGTATGAGTATTCATATTGT-TCT
* * * * *
6561 T-TTTAAAAAGACAAACCTTGATTCTATCAAAAACGGCGAGAAGA-AATGCTTTTCTTGAGACAC
124 TATTT-AAAAGACAAACTTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGCTTTTCTTCAGACA-
* * * * * *
6624 CAAAGCATCAATGTCATATATCCTAATGATGGCAATGTGTTTTGGCTTCCTAATCTTGAAAAGAA
187 CAAAGCATCAATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * * * * * * *
6689 CGAAAACTG-TCAGGAGAATCGATGCTTCTCTTATTCAAGGGATGAACTTTGATTTTATA-GATA
252 CGGAGACTGCT-AGGAGAATCGACGCTTATCATATTCAAGCGATGAACATTCATTTTA-AGGA-A
** ** *
6752 ATTAGGCAAAGAAAAGATTTCCATGCA-AAAGAAAAACATCAATGTTGTTT-TACTCGAATGAAG
314 AACAGGCAAAGAAAA-ATTTCCATGCATAAA-AAAAACATCAATGTCATTTAT-C-CGAATGAGG
* * *
6815 AGAATGTGTTTATAGTGCCTTATCAC-AAAAGAATGAAGATCATTACTAGAATC
375 AGAATGTGTTTATAGTGCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATC
6868 TAGGTTTGTG
Statistics
Matches: 3405, Mismatches: 526, Indels: 517
0.77 0.12 0.12
Matches are distributed among these distances:
439 1 0.00
440 87 0.03
441 77 0.02
442 105 0.03
443 119 0.03
444 147 0.04
445 141 0.04
446 8 0.00
447 12 0.00
448 4 0.00
449 9 0.00
450 8 0.00
455 1 0.00
458 5 0.00
459 3 0.00
460 6 0.00
461 2 0.00
463 2 0.00
464 1 0.00
465 2 0.00
467 10 0.00
468 11 0.00
469 6 0.00
470 13 0.00
471 16 0.00
472 10 0.00
473 125 0.04
474 210 0.06
475 743 0.22
476 833 0.24
477 504 0.15
478 126 0.04
479 2 0.00
480 9 0.00
481 4 0.00
482 4 0.00
483 1 0.00
484 5 0.00
485 7 0.00
486 1 0.00
487 2 0.00
488 3 0.00
490 1 0.00
491 5 0.00
492 1 0.00
493 5 0.00
494 1 0.00
496 3 0.00
497 1 0.00
499 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (443 bp):
GAAAGAGAATGCCCTTGTTGCAAAACCAAAGCATCATATATCGTGTATCCGAATGAGAAGACAAT
GTTTATGGTGCCTAATCCTAAAAGAAATTGGGATTAGTATGAGTATTCATATTGTTCTTATTTAA
AAGACAAACTTTGATTCTACCAAAAAGGGCGAGAAGAGAAAGCTTTTCTTCAGACACAAAGCATC
AATGTCGTGTATCCTAACGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAAAAGAACGGAGACTG
CTAGGAGAATCGACGCTTATCATATTCAAGCGATGAACATTCATTTTAAGGAAAACAGGCAAAGA
AAAATTTCCATGCATAAAAAAAACATCAATGTCATTTATCCGAATGAGGAGAATGTGTTTATAGT
GCCTTAACACAAAAAAAAGGAAGATCATTACTAGAATCCATAATTGGTGGGAA
Found at i:4229 original size:477 final size:476
Alignment explanation
Indices: 3206--11795 Score: 7947
Period size: 477 Copynumber: 18.0 Consensus size: 476
3196 TGAGAAGACT
* * * * *
3206 ATTAGTATGAGTATTCATGTTTGGCTAATTTAAGGGACAAACTTTGATTCTATCAAAAACGTCGG
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
* *
3271 GAAGAAAATCTTTTCTTGAGACACCCAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
66 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
* ** * *
3336 TTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACCAGAATCGATGCTTGTCTTATTCAGGGG
131 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
*
3401 ATGAACTTTGATTTTAAGGA-AATTGGGCAAAG-AAAGATTTTCATGCAAAAGAAAATCATCAAT
196 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* *
3464 GTCTTTTATCCTAATGTGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
261 GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
* * *
3529 CTAGAATCCATGTTTGTCTCATTTGTGGCACGAACATAGACTTTACAAAAATTGGAAAGAAGAAA
326 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
* *
3594 GCCTTTGTTGCGAAACCAAAGCCTCAATATCGTGTATCCTAACGAGAAGACTATGTTTATGG-GC
391 GCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG-
3658 CCTAATCC-AGAAAAGAATTGGG
455 CCTAATCCTA-AAAAGAATTGGG
*
3680 ATTAGTGT-ATGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTTGATTCTATCAAAAAGGGC
1 ATTAGTGTGA-GTATTCATGTTTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGC
** * * * *
3744 AAGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTGTCCTAACGAAGGCAATGTG
64 GGGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTG
* * * *
3809 ATTTGGCTTCCCAATCTTGAAATGAATTGAGACTATTATGAGAATCGATGCTTCTCTTATTCAAG
129 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAG
* * *
3874 AGATGAACTTTGATTTTAAGAATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATGA
194 GGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * *
3939 ATGTCGTTTATCCTAATGCGGAGAAATGTGCTTATAGTACCGTATCACAAAAAGAATGAAGAT-A
259 ATGTCATTTATCCTAATGCGGAG-AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCA
* * * * ** * *
4003 ATACAAGAATCCATATTTGTCTCATTTGGGGCACGAACAGAGAGTTTAAAAAAATTGGAAAGAAG
323 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAG
* * * * * *
4068 AATGCCTTTCTTGCAAAACCAAAGCATCAAATATCGTGTATTCGAATGAGAAGACAATGTTTATG
388 AAAGCCTTTGTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTATGTTTATG
4133 GTGCCTAATCCTAAAAAGAATTGGG
452 GTGCCTAATCCTAAAAAGAATTGGG
* * * *
4158 ATTAGTATGAGTATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGCGG
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
* * * * **
4223 GAAGAAAAGCTTTTCTTTAGACACCAAAGCATCAATGTCGTGAATCCTAATGATGGCAACATG-T
66 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
* * * * * *
4287 TTGGCTTGCTAATCTTG-AAAGAACGGAGACTATTAAGAGAATCGATGCTTGTCTTATTCAAGGG
131 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
* * * * *
4351 ATGAACATTCATTTTAAGGATAATTGGGC-AAGAAAAAATTTCTATGCAAAAGAAAATCGTCAAT
196 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * *
4415 GTCATTTACCCTAATGTGGAGAATGTGTTTATAGTGCCTTAGT-ACAAAAAAAATGAAGATCATT
261 GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTA-TCACAAAAAGAATGAAGATCATT
* * * *
4479 ACTAGAATCTATATTTGTCTCATTTGGGGCACGAACTTAGAATTTATAAAAATTGGAAAGAAGAA
325 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAA
* * * * * *
4544 AGTCTTTGTTGCGAGACCAAAGCATCAATATCATGCATCCTAAAGAGAAGACTAGGTTTATGGTG
390 AGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * *
4609 CCTAATCCTGAAAACAATGGGG
455 CCTAATCCTAAAAAGAATTGGG
* * * * * *
4631 ATTAGTGTGAGTATTCACGTTTGACTTATTTAAGAGACAAACTTTTGATTCTATTAATAAGGGCA
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGCG
* * * * * *
4696 AGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTCTTAACGAAGGCAATGTTT
65 GGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGT
* * * * * *
4761 TTTGGCTTCCCAATCTTGAAATGGATGGAGACTGTTATGAGATTCGATGCTTATCTTATTTAGGG
130 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGG
*
4826 GATGAACTTTGATTTTAAGGATAATTGGGC-AAGACAAAG-TTTCCATGCAAAAGAAAATCGTCA
195 GATGAACTTTGATTTTAAGGATAATTGGGCAAAGA-AAAGATTTCCATGCAAAAGAAAATCATCA
* * * * *
4889 ATGTCATTTACCCTAATGCGGAGACTGTGTTTATAGTGCCCTATTACAAAAAAAAATGAAGATCA
259 ATGTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAAGAATGAAGATCA
* *
4954 TTACCAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAG
323 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAG
* * * *
5019 AAAGCCTTTGTTGCAAAACCAAAGCATCAATAACGTGTATCCTAATGAAAAGACTATGTTTACGG
388 AAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG
* *
5084 TGCCTAATCTTAAAAAGAATAGGG
453 TGCCTAATCCTAAAAAGAATTGGG
* * * *
5108 ATTAGTGTGAGCATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGACAG
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
* * * *
5173 GAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCATGTGTCCTAACGAAGGCAATGTGTT
66 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
* * * *
5238 TTGGCTTCCCAATCTTGAAATGAACGGAGACTGTTATGAGAATCGATGCTTCACCTATTCAAGGG
131 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
* *
5303 ATGAACTTTGATTTTAAGGATAACTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAGTCATCAAT
196 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * *
5368 GTCATTTATCCTAATGCGAAAAATGTGTTTATAGTGCCTTATCACAAAAA-AATGAAGATTATTA
261 GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
*
5432 CTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
326 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
* * * * * * * *
5497 GACTCTATTGCGAAACGAAAGCCTCAATATCGTGTATCCTAATAAGAATAGTATGTTTATGGTGC
391 GCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
*
5562 CTAATCCTAAAAAGAATGGGG
456 CTAATCCTAAAAAGAATTGGG
* * * **
5583 ATTAGTGTGAGTATTTATGTTTGGCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGCAA
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
* * *
5648 GAAGAAAAGCTTTTCTTGAGACACCCAAGCATCAATGTCATGTATCCTAATTAAGGCAATGAGTT
66 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
* * * *
5713 TTGGCTTCCCAATCCTGAAAAGAATGGAGACTGATACGAGAATCGATGCTTGTCTTATTCAAGGG
131 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
*
5778 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAC
196 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * * * *
5843 ATCATTTATCCTAATGCGGAGAATCTTTTTATAGTGCCTTATTAGAAAAAGAATGACGATCATTA
261 GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
* * * * * * ** *
5908 CAAGAATCCATATTTGTCTCATTTGAGGTACGAACTTAGACTTTTCAATAATTGG-TGGAAAAAA
326 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
* * * * *
5972 GCCTTTGTTGTGAAATCAAAGCATCAATATCGTATATCCTAATGACAAGTCTATGTTTATGGTGC
391 GCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * *
6037 CTGATCCTGAAAAGAA-TGGAT
456 CTAATCCTAAAAAGAATTGG-G
* * * * * **
6058 ATTATTGTGAGTGTTCAAGTTTGTCTTATTTTAGAGACAAACTTTTGATTCTATCAAAAAGGGTA
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGCG
* * * * * *
6123 GGAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCTTGTGTCCTAACGAAGGCAATGCGT
65 GGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGT
* * ** * * *
6188 TTTGGCTTCCCAACCTTGAAAAGAATCGAGACTGTTGCGGGAATCGATGCTTTTCTTATTCAGGG
130 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGG
6253 GATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
195 GATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * *
6318 TGTCATTTACCCTAATGCGGAGAATCTATTTATAGTGCCTCATCACAAAAAGAATGAAGATCATT
260 TGTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATT
** * * * * *
6383 ACTAGGCTCTAGGTTTGTCTTATTTGAGGTACGAACATAGAATTTACAAAAATTGGAAAGAAGAA
325 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAA
* * ** * *
6448 AGCCTCTGTTGTGATTCCAAAGCATCATTATCGTGTATCCTAATGAGAAGACTATGTTTACGGTG
390 AGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* **
6513 CCTAATCCTGAAAAGAATAAGG
455 CCTAATCCTAAAAAGAATTGGG
* * * *
6535 ATTAGTATGAGTATTCATATTTGTCTT-TTTAAAAAGACAAACCTTGATTCTATCAAAAACGGCG
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAACGGCG
* * * *
6599 AGAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTCATATATCCTAATGATGGCAATGTGT
65 GGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGT
* * * * * *
6664 TTTGGCTTCCTAATCTTGAAAAGAACGAAAACTGTCAGGAGAATCGATGCTTCTCTTATTCAAGG
130 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGG
* *
6729 GATGAACTTTGATTTTATA-GATAATTAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACATCA
195 GATGAACTTTGATTTTA-AGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
** * **
6793 ATGTTGTTT-TACTCGAATGAAGAGAATGTGTTTATAGTGCCTTATCAC-AAAAGAATGAAGATC
259 ATGTCATTTAT-C-CTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATC
* * * *
6856 ATTACTAGAATCTAGGTTTGTGTCATTTGAGGCACGAACTTAGAATTTACAAAAATTAGAAAGAA
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAA
* * * * * *
6921 GAAAATCCTCTGTTGCGAATCCAAAGCGTCAATATCGTGTATCCTAATAAGAAGACTATATTTAT
387 G-AAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTAT
*
6986 GGTGCCTAATCCTGAAAAGAA-TGGG
451 GGTGCCTAATCCTAAAAAGAATTGGG
* * *
7011 AATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAG---AATTTTGATTCTATTAAAAACGGTG
1 -ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCG
* * * *
7073 GGAAGAAAAGCTTTTCTTGCA-ACACCAAAGCATGAGTGTCGTGTATCCTAATGAAGGCTATGTG
65 GGAAGAAAAGCTTTTCTTG-AGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTG
* * * *
7137 TTTTGGCTTTCCAATCTCGAAAAGAATGGAGACTGTTATGAGAATCAAGGCTTCTCTTATTCAAG
129 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAG
** * * * *
7202 GGATGAACTTTGATTTTAAAAATAACTGGGCAAAGAAAAGATTTTCATGTAAGAGAAAATCATCA
194 GGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * * ** * * * *
7267 ATCTCATTTATCCTAATGTGCAGAAACTATTTATAGTGCCTTATTACAAAAAGAACGGAGATCAT
259 ATGTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCAT
* * * * * *
7332 TACAAGAATCCATGTTTGTCTCTTTTGAGGTACGAACATAGACTTTATAAAAATTGGAAAGAAGA
324 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGA
* * * *** *
7397 AAACCTTTATTGCAAAACCAAAGCATCAAATATCGTGTATTAGAATGAGAGGACTATGTTTATGG
389 AAGCCTTTGTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTATGTTTATGG
* * *
7462 TGCCTAATCCTGAAAAGAGTGGGG
453 TGCCTAATCCTAAAAAGAATTGGG
* * * ** *
7486 ATTAGTTTGAGTATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTC-CCCAAAATATGGCG
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGCG
* * * * * * * *
7550 GGAAGACAAGCTTTTCCT-ACGAAACCAAAGCTTCAAT-TCGTGTGTCCTAATAAAGGTAATGTG
65 GGAAGAAAAGCTTTTCTTGA-GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTG
* * * *
7613 TTTTGGCTTCCTAATCTTGAAAAGAATAGAGACTGTTACGAGAATCAATGCTTCTCTTATTCAAG
129 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAG
* * *
7678 GGATGAACTTTGATTTTAAAGATAATTGGGCAAAGAAAAGATTTCCAAGCAAAAAAAAATCATCA
194 GGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* **
7743 ATGTCATTTATCCTAATGCGAAGAAACTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCAT
259 ATGTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCAT
* * * * *
7808 TACAAGAATCCATGTTTGACTCATTTGAGGCATGAACATAGATTTTACAAAAATTGGTAAAGAAG
324 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGG-AAAGAAG
** * *
7873 AAAGCCTTTGTCACAAAACCAAAGCATCAAATATCGTGTATCCTAATGAGAAGACTATGTTTGTG
388 AAAGCCTTTGTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTATGTTTATG
7938 GTGCCTAATCCTAAAAAGAA-TGAGG
452 GTGCCTAATCCTAAAAAGAATTG-GG
* * * * * * *
7963 ATTAGTATGAGTATTCATATTTGTCTTTTTTAAAAGATAAACTTTGATTCTATCAAAAACGGTGA
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
** * *
8028 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTTGTATATCCTAATGATGGCAATGTGTT
66 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
* * * * * *
8093 TTGGCTTCCTAATCTTGAAAAGAACGGAGACAGCTAGGAGAATCGATGCTTGTCTTATTCAAGGG
131 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
* * * * *
8158 ATGAATTTTCATTTTAAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACATCAAT
196 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
** * * * * * *
8223 GTGTTTTATCCGAATGAGGAGAATGTGTTTATAATGCCTTATTACCAAAAGAAGGAAGATCATTA
261 GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
* * * * ***
8288 CTAGAATCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTTACAACAATTGGTGGGAAGAAA
326 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
* * *
8353 GCCTTTGTTGCAAAACCAATGCATCAAATATCGTGTATCCTAATGAGAAGACTATGTTTGTGGTG
391 GCCTTTGTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
8418 CCTAATCCTAAAAAGAA-TGAGG
455 CCTAATCCTAAAAAGAATTG-GG
* * * * * * * ***
8440 ATTAGTATGAGTATTCATATTTGTCTTTTTTAAAAGATAAACTTTCATTCTATCAAAAACAGTAA
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
* * * *
8505 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCGTATATCCTAACGATGGCAATGTGTT
66 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
* * * * * *
8570 TTGGCTTCCTAATCTTGAAAAAAATGGAGACAGCTAGGAGAATCGATGCTTGTCTTATTCAAGGG
131 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
* * * * * *
8635 ATGAATTTTCATTTTAAGGAAAATCGGGCAAAAAAAAGATTTCCATGCAAAAGAAAAACATCAAT
196 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
** * * * * *
8700 GTGTTTTATTCGAATGAGGAGAATGTGTTTATAGTGCCTTATCACCAACAGAATGAAGATCATTA
261 GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
* * * * * * ***
8765 CTAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTGCAACAATTAGTGGGAAGAAA
326 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
* * *
8830 GCCTTTGTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGGGAAGATTATGTTTATGGTG
391 GCCTTTGTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* *
8894 CCTAATCCTGAAAAGAATGGGG
455 CCTAATCCTAAAAAGAATTGGG
* * *
8916 ATTAGCGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAACGACGG
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
* * * * *
8981 GAAG-AAAGCTTTTATTGTGACACTAAAGCATCAATGTCATGTGTCCTAACGAAGGCAATGTGTT
66 GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
* ** * * * **
9045 TTGGCTTCCCAATCTTGAAATGAACAGAGACTGTTATGAGAATCGAAGCTTCACCTATTCAACAG
131 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
* *
9110 ATGAACTTTGATTTTAAGGATACTTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAGTCATCAAT
196 ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* *
9175 GTCATTTATCCTAATGCGAAAAATGTGTTTATAGTGCCTTATCACAAAAA-AATGAAGATCATTA
261 GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
*
9239 CTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAG-A-AAA
326 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
* * * *
9302 --CTTTGTTGCGAAACCAAAGCCTCAATATCGTGTATCCTAATAAGAATAGTATGTTTATGGTAT
391 GCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG--T
* * * ** **
9365 ATCGTGTATCCTAATATCG---TGAA
454 -GCCT-AATCCTAA-AAAGAATTGGG
** ** * * * * * * * * ** * *
9388 ACCAAAG-CA-TCAAT-ATCGTATATCCTA-ATGAGAAGACTATGTTTAAGGTGCCTGATCCTGA
1 ATTAGTGTGAGT-ATTCAT-GTTTGTCTTATTTAAG-AGACAAACTTT--GAT-TCT-AT-C--A
** ** *** * * * ** * ** **
9449 AAAGAATG-GATATTAGTGTGAGCGTTCTT-GTGTGTCTTATTTTAGAG-A-CAAACTTTTG-AT
56 AAA-ACGGCGGGA--AG-AAAAGC-TT-TTCTTGAGAC--A--CCAAAGCATCAATGTCATGTAT
* ** * * * * * * *
9509 TCTATCAAAAAGGGCAGGAAGAAAAGCTTTT--CTTGCGACA-C-T--AAAGCAT-CA-A-TGTC
111 CCTA--ATGAA-GGCA--ATG---TG-TTTTGGCTTCCCA-ATCTTGAAAAGAATGGAGACTGTT
* * * * ** * * **** * * *
9565 ATGTGTCCTAA-CGAAGGCAATGC-GTT-TT---GGCTTCCCAACCTTGAAAAAAATCGAGACTG
166 ATGAG----AATCG-ATGC--TTCTCTTATTCAAGGGAT--GAACTTTGATTTTAA-GGATAAT-
* * *** * * * * *** * ***
9624 TCGCGAAAATCGATGCTTTTCTTATTCAGGGGATTAA-C-TC--TG--ATTTAAAGGATAATTG-
220 T-GGGCAAAGAAAAG-ATTTC-CATGCAAAAGA-AAATCATCAATGTCATTT--ATCCTAA-TGC
*** * * * * * * *** * *
9682 GGCA-AA---GAAAAGATTTCCATA-CA-AAAGAAAATCATCAATG-TCATTTACCCTAATGC-G
278 GG-AGAATGTGTTTATAGTGCCTTATCACAAA-AAGA--ATGAA-GATCA-TTACTAGAATCCAT
**** * ** * * * * *
9739 GAGAATCT-ATTTATAGTGC-CTCA-TCACAA---A-AAGAA-T-G-AAGATCGTTACTAGGCTC
337 GTTTGTCTCATTT-GAG-GCACGAACTTAGAATTTACAAAAATTGGAAAGA-AG--A--AAGC-C
** ** ** * * * * ** * ** *
9794 TAGGTTTGTC-TTACTTGAGGCA-CGAACATAGAATTTA-CAAAAATTG-GAAAGACGAAATCCT
394 TTTG-TTG-CGAAAC-CAAAGCATC-AATATCG--TGTATC-CTAA-TGAG-AAGACTATGT-TT
* * * * ** * *
9855 CTGTTG-CGATTCC-AAAGCATCATTATCGTGT
449 ATGGTGCCTAATCCTAAA--A--AGAATTG-GG
* * * * * * * * **
9886 ATCCTAATGAGAAG-ACT-ATGTTTATGGTGCCTAATCCTGAAAAGA-ATAAGGATTAGTATGAG
1 AT--TAGTGTG-AGTATTCATG-TT-T-GT--CTTAT--TTAAGAGACA-AA--CTTTG-AT-TC
* *** * *** * * * * *
9948 TATTCATATTTGTCTTTTTAAAAAGACAAACCTTGATTCTATCAAAAACGGCGAGAAGAAATGC-
51 TA-TCAAAAACGGC-----GGGAAGA-AAAGCTT--TTCT-TGAGACAC--C-A-AAG-CAT-CA
* * * * * * ***
10012 TTTTCTTG-AGACACCAAAGCATCAATGCCATATATCCTAATGATGGCAATGTGTTTTGGCTTCC
100 ATGTCATGTA-TC-CTAATG-A--AGGC--------------------AATGTGTTTTGGCTTCC
* * * **
10076 TAATCTTGAAAAGAACGGAAACTGTTGGGAGAATCGATGCTTCTCTTATTCAAGGGATGAACTTT
140 CAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGGATGAACTTT
* * * *
10141 GATTTTATA-GATAATTAGGTAGAGAAAAGATTTCCATGCAAAAGAAAATCATCAACGTCATTTA
205 GATTTTA-AGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTA
** * * * * *
10205 TCCTAATGTAGAGAA-CTATTTATAGTGCCCTATCA-TAAAAGAATGAAGATCATTACAAGAATC
269 TCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATC
* *
10268 CATGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACAAAAATTGGAAAGAAGAAACCCTTTGT
334 CATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTTGT
* *
10333 TGCGAAACCAAAG--T-AGATATCATGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCC
399 TGCGAAACCAAAGCATCA-ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* *
10395 TGAAAAGAATGGGG
463 TAAAAAGAATTGGG
* * * * * *
10409 TTTATTAT-AGATATTCAT-ATTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTG
1 ATTAGTGTGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCG
* * * ** *
10472 AGAAGAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTTGTGTATCCTAATGAAGGCAACGTGT
65 GGAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGT
* * * * *
10537 TTTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTATTAGAATTGATGCTTGTCTTATTCAGGG
130 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGG
* * * * *
10602 GATAAACTTTGATTTTATGGGTAATAGGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCATCAA
195 GATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * *
10667 TGTCATTTATCATAATGCGGAGAATCTGTTTATAGTGCCTTATCACAAAATGAATAAAGATCATT
260 TGTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATT
* *
10732 ACTAGAAT-C---TATG-CTCATATGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAA
325 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAA
* * * * *
10792 AGCCTTTGTTGCGAAACCATAGCGTCAATATCATGTATCCTAATGAGAAGAATAGGTTTATGGTG
390 AGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * **
10857 CCAAATCCTGAAAAGAACGGGG
455 CCTAATCCTAAAAAGAATTGGG
* * **
10879 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTTGATTCTATCAAAAATGATG
1 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGCG
* * * **
10944 GCAATAAAAGCCTTTCTT-ACGACACCAAAGCATCAATGTTGTGTATCCTAATGAAGGCAATGTG
65 GGAAGAAAAGCTTTTCTTGA-GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTG
* * * * * * *
11008 TTTTGGCATCCCAATCTTAAAAATAATGGAGACTGTTACGATAATCAATGCTTGTCTTATTCAAG
129 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAG
* **
11073 GGATGAACTTTGATTTCAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTGTCA
194 GGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * ** *
11138 ACGTCTTTTATCCTAATGCGGAGAAACTGTTTATATTGCCTTATCACAAAAAGAATG-A-AT-AT
259 ATGTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCAT
* * * * * ***
11200 TACTAGAATCC-TCATTTGTCTCATTT-ATAGCACCAACTTAGACTTTACAACAATTGGTGGGAA
324 TACTAGAATCCAT-GTTTGTCTCATTTGA-GGCACGAACTTAGAATTTACAAAAATTGGAAAGAA
* * *
11263 GAAAGCCTTTGTTGCAAAACCAGAGCATCAATATCGTGTACCCTAATGAGAAGACTATGTTTATG
387 GAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATG
* *** *
11328 GTGCCTAATCGTGGCAGGAA-TGGG
452 GTGCCTAATCCTAAAAAGAATTGGG
* * *
11352 TATTGGTGTG-GTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGGGT
1 -ATTAGTGTGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGC
*
11416 GGAAAGAAAAGCTTTTCTTGCA-ACACCAAAGCATC-A----ATG--TCC------A--CAATGT
64 GGGAAGAAAAGCTTTTCTTG-AGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGT
* * *
11465 GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGTGAATCGATGCTTCCCTTATTCAA
128 GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAA
* ** * *
11530 AGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTTAATGCAAAGGAAAATCATT
193 GGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * * **
11595 AATGTCATTTATCTTACTGCGGAGAATCTG-TT-TA-TCCCTTATCGCAAAGTGAATGAAGATCA
258 AATGTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCA
* * * * * **
11657 TTACTAGAATCCATGTTTGTCTCATTTGTGGCATGAACATAGACTTTACAACAATTTGG-GGGAA
323 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAA-AAATTGGAAAGAA
* * * * * *** *
11721 GAAAGCCTTTGTTGCGAAACTAAAGCGTCAAAATCGTGTATCCTAGTGAGGAGAAGGTGTTTATA
387 GAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATG
11786 GTGCCTAATC
452 GTGCCTAATC
11796 ACAAAATGAA
Statistics
Matches: 6677, Mismatches: 1158, Indels: 578
0.79 0.14 0.07
Matches are distributed among these distances:
455 17 0.00
456 3 0.00
457 4 0.00
458 256 0.04
459 6 0.00
460 1 0.00
466 3 0.00
468 67 0.01
469 14 0.00
470 128 0.02
471 182 0.03
472 266 0.04
473 256 0.04
474 800 0.12
475 984 0.15
476 1332 0.20
477 1402 0.21
478 380 0.06
479 4 0.00
480 2 0.00
481 3 0.00
482 4 0.00
483 8 0.00
484 10 0.00
485 18 0.00
486 11 0.00
487 18 0.00
488 28 0.00
489 29 0.00
490 23 0.00
491 24 0.00
492 17 0.00
493 21 0.00
494 7 0.00
495 14 0.00
496 10 0.00
497 5 0.00
498 2 0.00
500 7 0.00
501 9 0.00
502 2 0.00
503 7 0.00
504 5 0.00
505 4 0.00
507 9 0.00
508 12 0.00
509 8 0.00
510 7 0.00
511 2 0.00
512 4 0.00
513 7 0.00
514 10 0.00
515 3 0.00
516 5 0.00
518 2 0.00
519 3 0.00
520 1 0.00
521 5 0.00
522 2 0.00
523 2 0.00
524 4 0.00
526 5 0.00
527 14 0.00
528 10 0.00
529 13 0.00
530 11 0.00
531 27 0.00
532 30 0.00
533 25 0.00
534 32 0.00
535 9 0.00
536 5 0.00
537 10 0.00
538 1 0.00
539 2 0.00
540 4 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
GAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATGTGTT
TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTCTCTTATTCAAGGG
ATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
GTCATTTATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAA
GCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
CTAATCCTAAAAAGAATTGGG
Found at i:8104 original size:159 final size:159
Alignment explanation
Indices: 7886--8583 Score: 441
Period size: 159 Copynumber: 4.4 Consensus size: 159
7876 GCCTTTGTCA
* * * *
7886 CAAAACCAAAGCATCAAATATCGTGTATCCTAATGAGAAGACTATGT-TTGTGG-TGCCTAATCC
1 CAAAACCAAAGCATC-AATGTCGTATATCCTAATGAG--GACAATGTGTTTTGGCTGCCTAATCC
* * *
7949 TAAAAAGAATGAGGATTAGTATGAGTATTCATATTTGTCTTTTTTAAAAGATAAACTTTGATTCT
63 TAAAAAGAATGAGGATCAGTATGAGTATTCATATTTGTCTTATTTAAAAGATAAACTTTCATTCT
8014 ATCAAAAACGGTGAGAAGAAAAGCTTTTCTTG
128 ATCAAAAACGGTGAGAAGAAAAGCTTTTCTTG
* * * *
8046 -AGACACCAAAGCATCAATGTTGTATATCCTAATGATGG-CAATGTGTTTTGGCTTCCTAATCTT
1 CA-AAACCAAAGCATCAATGTCGTATATCCTAATGA-GGACAATGTGTTTTGGCTGCCTAATCCT
* * * * ** * ** * *
8109 GAAAAGAACG-GAGA-CAGCTAGGAG-AATCGATGCTTGTCTTATTCAAGGGATGAATTTTCATT
64 AAAAAGAATGAG-GATCAG-TATGAGTATTC-ATATTTGTCTTATTTAAAAGATAAACTTTCATT
* ** * * * *
8171 TTAAGGAAAATCGG-GCA-AAGAAAAGATTTCCATG
126 CT-ATCAAAAACGGTG-AGAAGAAAAGCTTTTCTTG
** * * * * ** *
8205 CAAAAGAAAAACATCAATGT-GTTTTATCCGAATGAGGAGAATGTGTTTAT-AATGCCTTAT--T
1 CAAAACCAAAGCATCAATGTCG-TATATCCTAATGAGGACAATGTGTTT-TGGCTGCCTAATCCT
* * * * * * * * * **
8266 ACCAAAAGAAGGAAGATCATTACT-AGAATCCATATTTGTCTCATTT-GAGGCACAAACTTAGAC
64 A--AAAAGAATGAGGATCAGTA-TGAGTATTCATATTTGTCTTATTTAAAAG-ATAAACTTTCA-
** * * *
8329 TT-TA-CAACAATTGGTGGGAAG-AAAGCCTTTGTTG
124 TTCTATCAA-AAACGGTGAGAAGAAAAGCTTTTCTTG
* * * * *
8363 CAAAACCAATGCATCAAATATCGTGTATCCTAATGAGAAGACTATGT-TTGTGG-TGCCTAATCC
1 CAAAACCAAAGCATC-AATGTCGTATATCCTAATGAG--GACAATGTGTTTTGGCTGCCTAATCC
* *
8426 TAAAAAGAATGAGGATTAGTATGAGTATTCATATTTGTCTTTTTTAAAAGATAAACTTTCATTCT
63 TAAAAAGAATGAGGATCAGTATGAGTATTCATATTTGTCTTATTTAAAAGATAAACTTTCATTCT
* *
8491 ATCAAAAACAGTAAGAAGAAAAGCTTTTCTTG
128 ATCAAAAACGGTGAGAAGAAAAGCTTTTCTTG
* * *
8523 -AGACACCAAAGCATCAATGTCGTATATCCTAACGATGG-CAATGTGTTTTGGCTTCCTAATC
1 CA-AAACCAAAGCATCAATGTCGTATATCCTAATGA-GGACAATGTGTTTTGGCTGCCTAATC
8584 TTGAAAAAAA
Statistics
Matches: 392, Mismatches: 106, Indels: 81
0.68 0.18 0.14
Matches are distributed among these distances:
157 13 0.03
158 51 0.13
159 259 0.66
160 61 0.16
161 8 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (159 bp):
CAAAACCAAAGCATCAATGTCGTATATCCTAATGAGGACAATGTGTTTTGGCTGCCTAATCCTAA
AAAGAATGAGGATCAGTATGAGTATTCATATTTGTCTTATTTAAAAGATAAACTTTCATTCTATC
AAAAACGGTGAGAAGAAAAGCTTTTCTTG
Found at i:12541 original size:634 final size:615
Alignment explanation
Indices: 11146--12558 Score: 1608
Period size: 634 Copynumber: 2.3 Consensus size: 615
11136 CAACGTCTTT
* * * * * *
11146 TATCCTAATGCGGAGAA-ACTGTTTATATTGCCTTATCACAAAAAGAATGAATATTACTAG-A-A
1 TATCCTAATGAGAAGAAGA-TGTTTATAGTGCCTAATCACAAAAAGAATGAAGATTATTAGTATA
* * * * * * *
11208 TCC-TCATTTGTCTCATTTATAG-CACCAACTTAGACTTTACAACAATTGGTGGGAAGAAA-GCC
65 TCCAT-GTTTGTCGCATTTA-AGACACAAACTTAGACATTACAAAAATTGATGGGAA-AAATACC
* * * * *
11270 TTTGTTGCA-AAACCAGAGCATCAATATCGTGTACCCTAATGAGAAGACTATGTTTATGGTGCCT
127 TTTCTTG-AGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGCTTATGGTGCCT
* ** * * *
11334 AATCGTGGCAGGAATGGGTATTGGTGTGGTTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
191 AATCCTGAAAAGAATGGGGATTGGTGTGGTTATTCATCTTTGTCTTATTTAAGAGACAAACTTTG
*
11399 ATTCTATCAAAAAGGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCCACAATG
256 ATTCTATCAAAAAGGGAGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCCACAATG
* *
11464 TGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGTGAATCGATGCTTCCCTTATTCA
321 TGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATACTTCCCTTATTCA
* *
11529 AAGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTTAATGCAAAGGAAAATCAT
386 AAGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCAT
* * * * * * **
11594 TAATGTCATTTATCTTACTGCGGAGAATCTGTTTATCCCTTATCGCAAAGTGAATGAAGATCATT
451 CAATGACATTTATCTTAATGCGAAGAATCTGTTTATCCCATATCACAAAAAGAATGAAGATCATT
* * * * * **
11659 ACTAGAATCCATGTTTGTCTCATTTGTGGCATGAACATAGACTTTACAACAATTTGGGGGAAGAA
516 ACTAGAATCCATGTTTGTCTCATTTGAGACAAGAACATAGAATTTACAACAAATTGGAAGAAGAA
* *
11724 AGCCTTTGTTGCGAAACTAAAGCGTCAAAATCGTG
581 AGCCTTTGTTGCGAAACCAAAACGTCAAAATCGTG
* * * *
11759 TATCCTAGTGAGGAGAAGGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTAGTATAA
1 TATCCTAATGAGAAGAAGATGTTTATAGTGCCTAATCACAAAAAGAATGAAGATTATTAGTAT-A
* ** * *
11824 TCCATGTTTGTCGCATTTGAGGTACTAACTTAGACATTACAAAAATTGGTGGGAAAAATACCTTT
65 TCCATGTTTGTCGCATTTAAGACACAAACTTAGACATTACAAAAATTGATGGGAAAAATACCTTT
*
11889 CTTGTGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGCTTATGGTGCCTAATC
130 CTTGAGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGCTTATGGTGCCTAATC
*
11954 CTGAAAAGAATGGGGATTGGTGTGAG-TATTTATCTTTGTCTTATTTAAGAGACAAACTTTTGAT
195 CTGAAAAGAATGGGGATTGGTGTG-GTTATTCATCTTTGTCTTATTTAAGAGACAAAC-TTTGAT
* * *
12018 TCTATCAAAAAGGGCAGG-AAGAAAAGCTTTTTTTGCGACACCAAAGCATCGATGTCGTGTGTC-
258 TCTATCAAAAAGGG-AGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC------CA
*
12081 CTAATGAAGGTAATCTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGA
316 C-AAT----G-----TGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * * *
12146 TACTTCTCTTATTCAAGGGATGGACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCAT
371 TACTTCCCTTATTCAAAGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCAAT
* *
12211 GCAAAAGAAAATCATCAATGACATTTATC-TAATGCGAAGAATCTATTTATAGTGCCATATCACA
436 GCAAAAGAAAATCATCAATGACATTTATCTTAATGCGAAGAATCT-GTT-TA-TCCCATATCACA
* * *
12275 AAAAGAATGAAGATCATTGCTAGAATCTATGTTTGTCTCATTTGAGACAAGAACATAGAATTTGC
498 AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACAAGAACATAGAATTTAC
*
12340 AA-AAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAACGTCAATATCGTG
563 AACAAATTGG-AAGAAGAAAGCCTTTGTTGCGAAACCAAAACGTCAAAATCGTG
*
12393 TATCCTAATGAGAAGACA-ATGTTTAT-GATGCCTAATC-CTAAAAAGAATG-GGATTAGTTTGA
1 TATCCTAATGAGAAGA-AGATGTTTATAG-TGCCTAATCAC-AAAAAGAATGAAGATTA--TT-A
** * *
12454 GTAT-T-CATGTTTGTCTTATTTAAGACACAAACTTTGA-TTCTATCAAAAA-TGATGGGAAGAA
60 GTATATCCATGTTTGTCGCATTTAAGACACAAACTTAGACAT-TA-CAAAAATTGATGGGAA-AA
* * * *
12515 A-AGCTTTTCTTGAGACACCCAAGCATCAATGTTGTGTATCCTAA
122 ATA-CCTTTCTTGAGAAACCAAAGCATCAATATTGTGTATCCTAA
12559 CAAAGGCAAT
Statistics
Matches: 675, Mismatches: 84, Indels: 61
0.82 0.10 0.07
Matches are distributed among these distances:
613 51 0.08
614 1 0.00
615 5 0.01
616 155 0.23
617 57 0.08
618 2 0.00
622 1 0.00
623 4 0.01
627 1 0.00
631 13 0.02
632 136 0.20
633 51 0.08
634 190 0.28
635 3 0.00
636 5 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (615 bp):
TATCCTAATGAGAAGAAGATGTTTATAGTGCCTAATCACAAAAAGAATGAAGATTATTAGTATAT
CCATGTTTGTCGCATTTAAGACACAAACTTAGACATTACAAAAATTGATGGGAAAAATACCTTTC
TTGAGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGCTTATGGTGCCTAATCC
TGAAAAGAATGGGGATTGGTGTGGTTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAAGGGAGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCCACAATGTGTTT
TGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATACTTCCCTTATTCAAAGGA
TGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATG
ACATTTATCTTAATGCGAAGAATCTGTTTATCCCATATCACAAAAAGAATGAAGATCATTACTAG
AATCCATGTTTGTCTCATTTGAGACAAGAACATAGAATTTACAACAAATTGGAAGAAGAAAGCCT
TTGTTGCGAAACCAAAACGTCAAAATCGTG
Found at i:13400 original size:158 final size:158
Alignment explanation
Indices: 11645--16254 Score: 473
Period size: 158 Copynumber: 29.1 Consensus size: 158
11635 ATCGCAAAGT
* * ** * * ** * * *
11645 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCATGAACATAGACTTTACAACA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAA-A
* ** * * * * ** * *
11710 ATTTGG-GGGAAGAAAGCCTTTGTTGCGAAACTAAAGCGTCAAAATCGTGTATCCTAGTGAGGAG
65 AATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAG
** *
11774 AAGGTGTTTATAGTGCCTAATCAC--AAAA
130 AATATGTTTATGGTGCCTAATC-CTGAAAA
* * * ** * * * * * *
11802 TGAATGAAGATTATTAGTATAATCCATGTTTGTCGCATTTGAGGTACTAACTTAGACA-TTACAA
1 -GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGA-ATTTACAA
*** * * * *
11866 AAATTGGTGGGAA-AAATACCTTTCTTGTGAAACCAAAGCATCAATATTGTGTATCCTAATGAGA
64 AAATTGGAAAGAAGAAA-GCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGA
* *
11930 AGACTATGCTTATGGTGCCTAATCCTGAAAA
128 AGAATATGTTTATGGTGCCTAATCCTGAAAA
* ** * * * * * * * * *
11961 GAATGGGGATTGGT-GTGAGTATTTATCTTTGTCTTATTTAAGAG-ACAAACTTTTG-ATTCTAT
1 GAATGGAGATTATTACT-AGAATCTGTATTTATCTCATTTAAG-GCACGAAC-TTAGAATT-TA-
* * * * * * * * ** *
12023 CAAAAA-GGGCAGGAAGAAAAGCTTTTTTTGCGACACCAAAGCATCGATGTCGTGTGTCCTAATG
61 CAAAAATTGGAAAGAAG-AAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATG
* * * * *
12087 A-AGGTAATCTGTTT-TGGCTTCCCAATCTTGAAAA
125 AGAAG-AATATGTTTATGG-TGCCTAATCCTGAAAA
* * * * * * * * * * * *
12121 GAATGGAGACTGTTACGAGAAT-TGATACTTCTCTTATTCAAGGGATGGACTTTGATTTTA-AGG
1 GAATGGAGATTATTACTAGAATCTG-TATTTATCTCATTTAAGGCACGAACTTAGAATTTACA--
* * * ** * * *
12184 ATAATTGGGCAAAG-A-AAAG-ATTTCCA-TGCAAAAGAAAATCATCAATGA-CATTTAT-CTAA
63 AAAATT-GG-AAAGAAGAAAGCCTTT--ATTGCGAAACCAAAGCATCAAT-ATTATGTATCCTAA
* * * * *
12243 TGCGAAGAATCTATTTATAGTGCC-ATATCAC-AAAAA
123 TGAGAAGAATATGTTTATGGTGCCTA-ATC-CTGAAAA
* * * * * * * * * * *
12279 GAATGAAGATCATTGCTAGAATCTATGTTTGTCTCATTTGAGACAAGAACATAGAATTTGCAAAA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAAA
* * * **
12344 ATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAACGTCAATATCGTGTATCCTAATGAGAAGA
66 ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAGA
* *
12409 CA-ATGTTTATGATGCCTAATCCTAAAAA
131 -ATATGTTTATGGTGCCTAATCCTGAAAA
* * * * * *
12437 GAATGG-GATTAGTT--TGAGTATTCATG--TTTGTCTTATTTAAGACACAAACTTTG-ATTCTA
1 GAATGGAGATTA-TTACT-AG-AATC-TGTATTTATCTCATTTAAGGCACGAACTTAGAATT-TA
* * * * * * * *
12496 TCAAAAATGATGGGAAG-A-AAAGCTTTTCTTGAGACACCCAAGCATCAATGTTGTGTATCCTAA
61 -CAAAAAT--TGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAA
* * * **
12559 -CA-AAGGCAATGTGTTT-TGGCAT-CCCAATTTTG-AAA
123 TGAGAA-G-AATATGTTTATGG--TGCCTAATCCTGAAAA
* * * * * * * * * * *
12594 GAAATGGAGACTGTTACGAGAAT-TG-ATGCTTCTCTTATTTAGGGGATGAGCTTTGATTTTA-A
1 G-AATGGAGATTATTACTAGAATCTGTAT--TTATCTCATTTAAGGCACGAACTTAGAATTTACA
* ** * * ** * *
12656 GGAAATTTGG-GCGAAGAAAAG-ATTTCCA-TGCAAAAGAAAATCATCAATATTATATATCCTAC
63 --AAAATTGGAAAGAAG-AAAGCCTTT--ATTGCGAAACCAAAGCATCAATATTATGTATCCTA-
* *
12718 TAT-AG-AGAA-AGTGTTTATAGTGCCTTATCAC--AAAA
122 -ATGAGAAGAATA-TGTTTATGGTGCCTAATC-CTGAAAA
* * * * *
12753 GGAATGAAGATCATTACTAGAATCTGTGTTCATCTCATTTGAGGCACGAACTTAGAATTTACAAA
1 -GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAA
* * *
12818 AACTGGAAAGAAGAAAGCCTTTGTCT-TGAAACCAAAGCATCAATATTATGTATCCTAATGAGAA
65 AATTGGAAAGAAGAAAGCCTTTAT-TGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAA
*
12882 -AACAATGTTTATGGTGCCTAATCCTGAAAA
129 GAA-TATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * * * * * *
12912 GAATGGGGATTAGT-GTGAGTATTTATCTTTGTCTTATTTAAGAG-ACAAACTTTTG-ATTCTAT
1 GAATGGAGATTATTACT-AGAATCTGTATTTATCTCATTTAAG-GCACGAAC-TTAGAATT-TA-
* * * * * * * ** * ** * *
12974 CAAAAA-GGGTAGGGAGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCGTGTGTGCTAATG
61 CAAAAATTGGAAAGAAG-AAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATG
* * * * *
13038 A-AAGTAATGTGTTT-TGGCTTCCGACTCTTGAAAA
125 AGAAG-AATATGTTTATGG-TGCCTAATCCTGAAAA
* * * * * * * * * *
13072 GAATGGAGACTATTACGAGAATC-GATACTTCTCTTATTCAAGGGATGAACTTTGATTTTA-AGG
1 GAATGGAGATTATTACTAGAATCTG-TATTTATCTCATTTAAGGCACGAACTTAGAATTTACA--
* * * ** * * * *
13135 ATAATTGGGCAAAG-A-AAAG-ATTTCCA-TGCAAAAGAAAATCATCAATGTTATATATCCTACT
63 AAAATT-GG-AAAGAAGAAAGCCTTT--ATTGCGAAACCAAAGCATCAATATTATGTATCCTAAT
* * * *
13196 GTAG-AGAATGTGTTTATAGTGCCTTATCAC-AAAAA
124 G-AGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA
* * *
13231 GAATGAAGATTATTACTAGAATCTGTATTTATCTCATTTGAGGCACGGACTTAGAATTTACAAAA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAAA
*
13296 ATTGGAAAGAAGAAAGCCTTTATTGTGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAGA
66 ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAGA
* *
13361 CTATGTTTATGGTGCTTAATCCTGAAAA
131 ATATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * * * * *
13389 GAATGGGGATTAGT-GT-GAGT-TTTCATCTTTGTCTTATTTAAAAG-ACAAACTTTG-ATTCTA
1 GAATGGAGATTATTACTAGAATCTGT-A--TTTATCTCATTT-AAGGCACGAACTTAGAATT-TA
* * * * * * * **
13449 TCAAAAACAATGGGAAG-A-AAAGCTTTTCTTTCGACACCAAAGCATCAATGTCGTGTATCCTAA
61 -C-AAAA-ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAA
* * * * * * *
13512 CGA-AGGAA-ACGTCTTTTGGCTTCCCAATCTTGAAAA
123 TGAGAAGAATATGT-TTATGG-TGCCTAATCCTGAAAA
* * ** ** * * * * * * *
13548 GAACGGAGACTATTA-TGAGAATCAATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTA-AGG
1 GAATGGAGATTATTACT-AGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACA--
* * * ** * ** ** *
13611 ATAATTGGGCAAAG-A-AAAG-ATTTCCA-TGCAAAAAAAAATCATCAACGTCGTTTATCCTAAT
63 AAAATT-GG-AAAGAAGAAAGCCTTT--ATTGCGAAACCAAAGCATCAATATTATGTATCCTAAT
* * * * * *
13672 GCGGAGAATCTGTTTATTGTGCCTTATCAC-AAAAA
124 GAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA
* * ** * * * *
13707 GAATGAAGATCATTA-TAGGAATCAATGTTTGTCTGA-TTAGAGGCACGAACTTAGACTTTACAA
1 GAATGGAGATTATTACTA-GAATCTGTATTTATCTCATTTA-AGGCACGAACTTAGAATTTACAA
* * * * * ** *
13770 AAATTGGAGAGAAGAAAGCATTTGTTGCGAAACCAAGGCTTCAATATCGTGTATCCTAATAAGAA
64 AAATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAA
* * *
13835 GACTACGTTTATGGTGCCTAATCTTGAAAA
129 GAATATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * * *
13865 GAATGGGGATTAGTA-TGAGTAT-T-CATATTGTCTTATTTTCAA-G-ACAAACTTTG-ATTCTA
1 GAATGGAGATTATTACT-AGAATCTGTAT-TTATCTCA-TTT-AAGGCACGAACTTAGAATT-TA
* *** * * * * * * * * *
13924 TCAAAAA-CGGCGGGAAGGAAAGCTTTTCTTGAGACACCAGAGCATTAATGTCATGTATGCTAAT
61 -CAAAAATTGGAAAGAA-GAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAAT
* * * * * *
13988 GATG-ACAATGTGGTT-TGGCTTCCCAATCTTGAAAA
124 GA-GAAGAATATGTTTATGG-TGCCTAATCCTGAAAA
* * * * * * * ** *
14023 GAA-GGCAGACTGT-TTGGC-A-AATC-G-ATGCTTGTTTTATTCAAGGGATGAACTTTCATTTT
1 GAATGG-AGA-T-TATT-ACTAGAATCTGTAT--TTATCTCATTTAAGGCACGAACTTAGAATTT
* * ** * * *
14082 A-AGGAAAATAGGGCAAAG-A-AAAG-ATTTCCA-TGC-AACAGGAAAACATCAATGTCT-TTTA
60 ACA--AAAAT-TGG-AAAGAAGAAAGCCTTT--ATTGCGAA-ACCAAAGCATCAATAT-TATGTA
* * * * *
14140 TCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAA
117 TCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA
** * * * * * * * *
14182 GAATTAAGATCATTACTAGAATCTATGTTTATCTAATTTGAGGCACGAACTTAGACTTTGCAACA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAAA
* *** * * * **
14247 ACTGGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAATATCGTGTATCCTAATGAGAAGA
66 ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAGA
*
14312 CTATGTTTATGGTGCCTAATCCTGAAAA
131 ATATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * * * * *
14340 GAATGGGGATTAGT-GTGAGTAT-T-CATCTGTCTTATTTAAGAG-ACAAACTT-TAATTCTATC
1 GAATGGAGATTATTACT-AGAATCTGTATTTATCTCATTTAAG-GCACGAACTTAGAATT-TA-C
*** * * * * ** * * **
14400 AAAAA-TGGCGTGAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAA-AGTCGTGTATTCAAACC
62 AAAAATTGGAAAGAAG-AAAGCCTTTATTGCGAAACCAAAGCATCAATA-TTATGTATCCTAATG
* * * * * *
14463 A-AGGCAA-A-G-TAAAGGCTTCCTAATCTTGAAAG
125 AGAAG-AATATGTTTATGG-TGCCTAATCCTGAAAA
* * * * * * * * ** * *
14495 GAGTGGAGACTATTA-TGAGAAT-TG-ATGCTTGTCTTATTCAAGGGATGCACTTTCATTTTGAG
1 GAATGGAGATTATTACT-AGAATCTGTAT--TTATCTCATTTAAGGCACGAACTTAGAATTT-AC
* * * ** * * *
14557 GATAATTGGGCAAAGAA-AAA--ATTTCCA-TG-GAAAAGAAAAACATCAATGTCAAT-TATCCT
62 AAAAATT-GG-AAAGAAGAAAGCCTTT--ATTGCG-AAACCAAAGCATCAATAT-TATGTATCCT
* * * * * *
14616 AATGGGGAGAATGTGCTTATAGTGCC-ATATCAC-AAAAA
121 AATGAGAAGAATATGTTTATGGTGCCTA-ATC-CTGAAAA
* * ** * * * * * *
14654 GAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCGCGAATTTAGACTTTACAACA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAAA
* * * * * *
14719 ATTGGTAGGAAGAAAGCCTTTGTTGCGAAACCAAAGCATTAATATCATGTATCCTAAAGAGGAA-
66 ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGA-GAAG
* ** * *
14783 AATGTGTTTATAATGCCAAATCAC-AAAAA
130 AATATGTTTATGGTGCCTAATC-CTGAAAA
* * * * * * * * *
14812 GAATGAAAATCATTAGTAGAATCCGTATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAAA
*** * * *
14877 ATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGA
66 ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAGA
* * *
14942 CTATATTTATGGTGCCTAACCCTGAAAA
131 ATATGTTTATGGTGCCTAATCCTGAAAA
* * * * * ** *
14970 GAATGGAGATTAGT-GTGAGTAT-T-CATGTTAGTCTTATTTAAGAG-ATAAACTT-GGATTCTA
1 GAATGGAGATTATTACT-AGAATCTGTAT-TTA-TCTCATTTAAG-GCACGAACTTAGAATT-TA
* * * * **
15030 TCAAAAACGGTGGGAAG-A-AAAG-CTTTCCTTGTATCGAAACTAAAGCATCAATATCGTGTATC
61 -CAAAAA--TTGGAAAGAAGAAAGCCTTT-ATTG---CGAAACCAAAGCATCAATATTATGTATC
* * * *
15092 CTAACGAGAAGACTATGTCTATGGGGCCTAATCCTGAAAA
119 CTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * * * * * * * *
15132 GAATGGGGATTAGTATTAGTAT-TAATGTTTGTCTTATTTGAGAG-ACAAACTTTGAATCTATTA
1 GAATGGAGATTATTACTAGAATCT-GTATTTATCTCATTTAAG-GCACGAACTTAGAATTTA-CA
* * * ** * * * *
15195 AAAA-TGGCAGGACGAAAATCTTCTCTTGC-AACACCCAAGCATCAACATCATGTATCCTAAT-A
63 AAAATTGGAAAGAAGAAAGCCTT-TATTGCGAA-ACCAAAGCATCAATATTATGTATCCTAATGA
* * * * *
15257 -AAGGTAATGTGCTT-TGGCTTCCCAATCTTGAAAA
126 GAA-G-AATATGTTTATGG-TGCCTAATCCTGAAAA
*** * ** * * * * * * *
15291 GAATGGAGACGGTTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACA--A
* * * * ** * ** * * *
15355 AAATAGAGCAAAG-A-AAAG-ATTTCAATGCAAAAGAAAATCATCAACGTCATTTATCCTAAAGA
64 AAATTG-G-AAAGAAGAAAGCCTTT-ATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGA
* * * * *
15417 GGAGAATGTG-TTAGTAGTGCCTTATCAC-AAAAA
126 GAAGAATATGTTTA-TGGTGCCTAATC-CTGAAAA
* * ** * * * * * * * *
15450 GAATGAAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTAACAAC
1 GAATG-GAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAA
** * * * *
15515 AATTGGTGAGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTATCCTAACGAGAAG
65 AATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAG
*
15580 ACTATGTTTATGGTGCCTAATCCTGAAAA
130 AATATGTTTATGGTGCCTAATCCTGAAAA
* * * * ** * * * * * *
15609 GAATGGGGATTAGT-GTGAGTATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTG-ATCCTATC
1 GAATGGAGATTATTACT-AGAATCTGTATTTATCTCATTTAAG-GCACGAACTTAGAAT-TTA-C
* * * * * ** * *
15671 AAAAA-T-GACAGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCATTATCGTGTATCCCAACG
62 AAAAATTGGA-AAGAAG-AAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATG
* * * * *
15734 A-AGGTAATATGTTT-CGGCTTCCCAATCTTGAAAA
125 AGAAG-AATATGTTTATGG-TGCCTAATCCTGAAAA
* * * * ** * * ** * * * * * *
15768 GAGTGGAGACTGTAAAGACAATCTATGCTTAT-TGTATTCAAGGGATGAACTTTGATTTTA-AGG
1 GAATGGAGATTATTACTAGAATCTGTATTTATCT-CATTTAAGGCACGAACTTAGAATTTACA--
** * * * * ** * * *
15831 AAAATACGACA-AAGAAATG-ATTTCCA-CGCAAAAGAAAATCATCAATGTCAAT-TATCCTAAT
63 AAAATTGGAAAGAAGAAA-GCCTTT--ATTGCGAAACCAAAGCATCAATAT-TATGTATCCTAAT
* * * * *
15892 GAGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAA
124 GAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA
* * * * * *
15927 GAATGAAGATCATTACTAGAATCCTTGT-TTT-TCTCATTTGAGGCATGAACTCAGACTTTACAA
1 GAATGGAGATTATTACTAGAAT-C-TGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAA
* * * * * * * * *
15990 CAATTGGTAGGAAGAAAGCCTTTGTTGCAAAACCGAAGCATTAATATCATATATCCTAATGAGGA
64 AAATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGA-GA
* * * * *
16055 A-AATGTGTTTGTAGTGCCAAATCAC-AAAAA
128 AGAATATGTTTATGGTGCCTAATC-CTGAAAA
* * * ** * * * * * *
16085 GAATGGAAATCATTAGTAGAATCCATATTTGTCGCATTTGAGGCATGAACTTACACTTTACAAAA
1 GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAAA
*** * * ** * * *
16150 ATTGGCGGGAAGAGAGCTTTTGCTGTGAAACCAAAGC-TCCAATATCATGCATCCTAATGAGAAG
66 ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCAT-CAATATTATGTATCCTAATGAGAAG
* *
16214 ACTATGTTTATGGTGCCTAACCCTGAAAA
130 AATATGTTTATGGTGCCTAATCCTGAAAA
*
16243 GAATGGGGATTA
1 GAATGGAGATTA
16255 GTGTAAGTAT
Statistics
Matches: 3185, Mismatches: 937, Indels: 660
0.67 0.20 0.14
Matches are distributed among these distances:
154 4 0.00
155 42 0.01
156 74 0.02
157 275 0.09
158 1239 0.39
159 1068 0.34
160 307 0.10
161 47 0.01
162 121 0.04
163 7 0.00
164 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (158 bp):
GAATGGAGATTATTACTAGAATCTGTATTTATCTCATTTAAGGCACGAACTTAGAATTTACAAAA
ATTGGAAAGAAGAAAGCCTTTATTGCGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAGA
ATATGTTTATGGTGCCTAATCCTGAAAA
Found at i:13706 original size:476 final size:476
Alignment explanation
Indices: 11759--17156 Score: 4375
Period size: 475 Copynumber: 11.3 Consensus size: 476
11749 CAAAATCGTG
* * * * * * *
11759 TATCCTAGTGAGGAGAAGGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTAGTATAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * *** *
11824 TCCATGTTTGTCGCATTTGAGGTACTAACTTAGACA-TTACAAAAATTGGTGGGAA-AAATACCT
66 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGA-ATTTACAAAAATTGGAAAGAAGAAA-GCCT
* * * *
11887 TTCTTGTGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGCTTATGGTGCCTAA
129 TTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* *
11952 TCCTGAAAAGAATGGGGATTGGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTGA
194 TCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAAC-TTTGA
* * * * *
12017 TTCTATCAAAAAGGGCAGGAAGAAAAGCTTTTTTTGCGACACCAAAGCATCGATGTCGTGTGTCC
258 TTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCC
* * * * *
12082 TAATGAAGGTAATCTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGAT
323 TAACGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAT
* *
12147 ACTTCTCTTATTCAAGGGATGGACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATG
388 GCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATG
*
12212 CAAAAGAAAATCATCAATGACATT
453 CAAAAGAAAATCATCAATGTCATT
* * * * * *
12236 TAT-CTAATGCGAAGAATCTATTTATAGTGCCATATCACAAAAAGAATGAAGATCATTGCTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * *
12300 TCTATGTTTGTCTCATTTGAGACAAGAACATAGAATTTGCAAAAATTGGAAAGAAGAAAGCCTTT
66 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTT
* * * *
12365 GTTGCGAAACCAAAACGTCAATATCGTGTATCCTAATGAGAAGACAATGTTTATGATGCCTAATC
131 GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * *
12430 CTAAAAAGAAT-GGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGACACAAACTTTGATTC
196 CTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTC
* ** * * *
12494 TATCAAAAATGATGGGAAGAAAAGCTTTTCTTGAGACACCCAAGCATCAATGTTGTGTATCCTAA
261 TATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAA
* * * * * *
12559 CAAAGGCAATGTGTTTTGGCATCCCAATTTTG-AAAGAAATGGAGACTGTTACGAGAATTGATGC
326 CGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAG-AATGGAGACTATTACGAGAATCGATGC
* * * *
12623 TTCTCTTATTTAGGGGATGAGCTTTGATTTTAAGGA-AATTTGGGCGAAGAAAAGATTTCCATGC
390 TTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAA-TTGGGCAAAGAAAAGATTTCCATGC
* * *
12687 AAAAGAAAATCATCAATATTATA
454 AAAAGAAAATCATCAATGTCATT
* *
12710 TATCCTACTAT-A-GAGAAAGTGTTTATAGTGCCTTATCACAAAAGGAATGAAGATCATTACTAG
1 TATCCTA--ATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAG
* ** *
12773 AATCTGTGTTCATCTCATTTGAGGCACGAACTTAGAATTTACAAAAACTGGAAAGAAGAAAGCCT
64 AATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCT
* ** * *
12838 TTGTCT-TGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAAACAATGTTTATGGTGCCTA
129 TTGT-TGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
*
12902 ATCCTGAAAAGAATGGGGATTAGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTG
193 ATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAAC-TTTG
* * ** *
12967 ATTCTATCAAAAAGGGTAGGG-AGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCGTGTGT
257 ATTCTATCAAAAACGG-CGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTAT
* * * * * *
13031 GCTAATGAAAGTAATGTGTTTTGGCTTCCGACTCTTGAAAAGAATGGAGACTATTACGAGAATCG
321 CCTAACGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCG
*
13096 ATACTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCA
386 ATGCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCA
* *
13161 TGCAAAAGAAAATCATCAATGTTATA
451 TGCAAAAGAAAATCATCAATGTCATT
* *
13187 TATCCTACTGTA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATTATTACTAGA
1 TATCCTAATG-AGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGA
* * * *
13251 ATCTGTATTTATCTCATTTGAGGCACGGACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTT
65 ATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTT
* * ** *
13316 TATTGTGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAGACTATGTTTATGGTGCTTAAT
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
13381 CCTGAAAAGAATGGGGATTAGTGTGAGTTTTCATCTTTGTCTTATTTAAAAGACAAACTTTGATT
195 CCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATT
*** *
13446 CTATCAAAAACAATGGGAAGAAAAGCTTTTCTTTCGACACCAAAGCATCAATGTCGTGTATCCTA
260 CTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
* * * * *
13511 ACGAAGGAAACGTCTTTTGGCTTCCCAATCTTGAAAAGAACGGAGACTATTATGAGAATCAATGC
325 ACGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGC
*
13576 TTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCA
390 TTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCA
* * *
13641 AAAAAAAATCATCAACGTCGTT
455 AAAGAAAATCATCAATGTCATT
* * *
13663 TATCCTAATGCGGAGAATCTGTTTATTGTGCCTTATCACAAAAAGAATGAAGATCATTA-TAGGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTA-GA
* * * * * *
13727 ATCAATGTTTGTCTGATTAGAGGCACGAACTTAGACTTTACAAAAATTGGAGAGAAGAAAGCATT
65 ATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTT
* * * *
13792 TGTTGCGAAACCAAGGCTTCAATATCGTGTATCCTAATAAGAAGACTACGTTTATGGTGCCTAAT
130 TGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
13857 CTTGAAAAGAATGGGGATTAGTATGAGTATTCAT-ATTGTCTTATTTTCA-AGACAAACTTTGAT
195 CCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTA-TTTAAGAGACAAACTTTGAT
* * * * * *
13920 TCTATCAAAAACGGCGGGAAGGAAAGCTTTTCTTGAGACACCAGAGCATTAATGTCATGTATGCT
259 TCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCT
* * * * **
13985 AATG-ATGACAATGTGGTTTGGCTTCCCAATCTTGAAAAGAA-GGCAGACTGTTTGGCA-AATCG
324 AACGAAGGA-AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG-AGACTATTACG-AGAATCG
* * * * *
14047 ATGCTTGTTTTATTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
386 ATGCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCA
* *
14112 TGCAACAGGAAAA-CATCAATGTCTTT
451 TGCAA-AAGAAAATCATCAATGTCATT
*
14138 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATTAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * ***
14203 TCTATGTTTATCTAATTTGAGGCACGAACTTAGACTTTGCAACAACTGGTGGGAAGAAAGCCTTT
66 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTT
* *
14268 GTTGCAAAATCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
131 GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
*
14333 CTGAAAAGAATGGGGATTAGTGTGAGTATTCATC--TGTCTTATTTAAGAGACAAACTTTAATTC
196 CTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
14396 TATCAAAAATGGCGTGAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAAAGTCGTGTATTCAAA
261 TATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAA
* *** * * * * *
14461 CCAAGGCAAA---GTAAAGGCTTCCTAATCTTGAAAGGAGTGGAGACTATTATGAGAATTGATGC
326 CGAAGG-AAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGC
* * * * * *
14523 TTGTCTTATTCAAGGGATGCACTTTCATTTTGAGGATAATTGGGCAAAGAAAAAATTTCCATGGA
390 TTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCA
* *
14588 AAAGAAAAACATCAATGTCAAT
455 AAAGAAAATCATCAATGTCATT
* * *
14610 TATCCTAATGGGGAGAATGTGCTTATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * * *
14675 TCCATATTTGTCTCATTTGAGGCGCGAATTTAGACTTTACAACAATTGGTAGGAAGAAAGCCTTT
66 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTT
* * * * * ** *
14740 GTTGCGAAACCAAAGCATTAATATCATGTATCCTAAAGAGGAA-AATGTGTTTATAATGCCAAAT
131 GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAAT
* *** * * * * * * * * * *
14804 CAC-AAAAAGAATGAAAATCATTAGT-AGAATCCGTATTTGTCTCATTTGAG-GCACGAACTTAG
195 C-CTGAAAAGAATGGGGATTAGT-GTGAGTATTCATCTTTGTCTTATTTAAGAG-ACAAACTTTG
** * * * * * * *
14866 ACTT-TA-CAACAATTGGTGGGAAG-AAAGCCTTTGTTGCGAAACCAAAGCTTCAATATCATGTA
257 A-TTCTATCAA-AAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTA
* * * * * * * * * **
14928 TCCTAATG-A-GAAGACTATATTTATGG-TGCCTAACCCTGAAAAGAATGGAGATTAGTGTGAGT
320 TCCTAACGAAGGAA-A-TGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG-
* * * * * * * *** * *
14990 ATTC-ATG-TTAGTCTTATTTAAGAGATAAACTTGGATTCTATCAAAAACGGTGGG--AAGAAAA
381 AATCGATGCTT-CTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAA--TTGGGCAAAGAAAA
* * * ** * * * *
15051 GCTTTCCTTGTATCGAAACTAAAGCATCAATATCGTG
443 GATTTCCATG---CAAAAGAAAATCATCAATGTCATT
* * * * * * * * * ** * * * *
15088 TATCCTAACGAGAAGACTATGTCTATGGGGCCTAATC-CTGAAAAGAATGGGGATTAGTATTAGT
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAAGAATGAAGATCATTACTAGA
* * * * * * * * **
15152 AT-TAATGTTTGTCTTATTTGAGAG-ACAAACTTTGAATCTATTAAAAA-TGGCAGGACGAAAAT
65 ATCT-ATGTTTGTCTCATTTGAG-GCACGAACTTAGAATTTA-CAAAAATTGGAAAGAAGAAAGC
* * * * *
15214 CTTCTCTTGC-AACACCCAAGCATCAACATCATGTATCCTAAT-A-AAG-GTAATGTGCTT-TGG
127 CTT-TGTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACT-ATGT--TTATGG
* * * * ** * * *
15274 CTTCCCAATCTTGAAAAGAATGGAGA-CGGT-TACGAG-AATCAATGTTTGTCTTATTTAAGGGA
187 -TGCCTAATCCTGAAAAGAATGGGGATTAGTGT--GAGTATTC-ATCTTTGTCTTATTTAAGAGA
** * *** ** * ** * * * * ** * *
15336 TGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAAC
248 CAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTC-TTGCGACACCAAAGCATCAAT
* * * * * * ** *** *
15400 GTCATTTATCCTAAAG-AGGAGAATGTGTTAGTAG-TGCCTTATCACAAAAAGAATGAAAGA-TC
312 GTCGTGTATCCTAACGAAGGA-AATGTGTT-TTGGCTTCCCAATCTTGAAAAGAATG-GAGACT-
* * * * ** * * * ** *
15462 ATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGA-CTTAACAACAATTGGTG-AG
373 ATTACGAGAATCGATGCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGG-GCA-
* ** ** * * *
15525 AAG-AAAGCCTTT-GTTGCAAAACCAAAGCATCAATATCATG
436 AAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATGTCATT
* * * * * * * ** * * *
15565 TATCCTAACGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAAGAATGGGGATTAGT-GTGAG
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAAGAATGAAGATCATTACT-AG
* * * * * * * *
15628 TATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTG-ATCCTATCAAAAA-T-GACAGGAAGAAA
64 AATCTATGTTTGTCTCATTTGAG-GCACGAACTTAGAAT-TTA-CAAAAATTGGA-AAGAAG-AA
* * * * * * * * *
15689 AGCTTTTCTTGCGACACCAAAGCATCATTATCGTGTATCCCAACGA-AGGTAATATGTTT-CGGC
124 AGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGG-
* * * * * * ** * * * * *
15752 TTCCCAATCTTGAAAAGAGTGGAGACT-GT-AAAGACAATCTATGCTTAT-T-GTATTCAAGGGA
187 TGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAG-TATTC-AT-CTT-TGTCTTATTTAAGAGA
** * ** * * * * * ** * * ** *
15813 TGAACTTTGATTTTAAGGAAAATACGAC--AAAGAAATGATTTCCACGCAAAAGAAAATCATCAA
248 CAAACTTTGATTCT-ATCAAAA-ACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * ** *** *
15876 TGTCAAT-TATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTTATCACAAAAAGAATGAAGA-T
311 TGTC-GTGTATCCTAACGAAGGA-AATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACT
* ** * * * ** * ** * *
15937 CATTACTAGAATCCTTGTTTTTCTCATTTGAGGCATGAACTCAGACTTTACA--ACAATTGGTAG
373 -ATTACGAGAATCGATGCTTCTCTTATTCAAGGGATGAACTTTGATTTTA-AGGATAATTGG--G
* * ** *** * * * *
16000 -GAAG-AAAGCCTTT-GTTGCAAAACCGAAGCATTAATATCATA
434 CAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATGTCATT
* * ** *
16041 TATCCTAATGAGGAAAATGTGTTTGTAGTGCCAAATCACAAAAAGAATGGAA-ATCATTAGTAGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAAT-GAAGATCATTACTAGA
* * * * * * *** * *
16105 ATCCATATTTGTCGCATTTGAGGCATGAACTTACACTTTACAAAAATTGGCGGGAAGAGAGCTTT
65 ATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTT
* * * *
16170 TGCTGTGAAACCAAAGC-TCCAATATCATGCATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
130 TGTTGCGAAACCAAAGCAT-CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * * *
16234 CCCTGAAAAGAATGGGGATTAGTGTAAGTATTCATGTTTGTGTTATTTAAAAGACAAACTTTGAT
194 TCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * * * *
16299 TCTATCAGAAACGGTGTGAAGAAAAGCTTTCCTTGCGACACCGAAGCATCAAAGTCGTGTATTCG
259 TCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCT
*
16364 AACCAAGGCAAA-GTGTTTTGGCTTCCCAATCTTG-AAAGAAGTGGAGACTATTACGAGAATCGA
324 AACGAAGG-AAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGGAGACTATTACGAGAATCGA
* * * * **
16427 TGCTTGTCTTATTTAAGGGATG-ACTTTCATTTTAAGGATAATTGTGTGAAGAAAAGATTTCCAT
387 TGCTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCAT
* * *
16491 GCAAAAGAAAAACATCAATGTAAAT
452 GCAAAAGAAAATCATCAATGTCATT
* * *
16516 TATCCGAATGTGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGATGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * * ***
16581 TCCATATTTGTCTCATATGAGGCACGAAGTTAGACTTTGCAACAATTGGTGGGAAGAAAGCCTTT
66 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTT
* * * * * *
16646 GTT-CTAAAACCAAGGCATCAACATCGTGTATCCTACTGAGAAGACTATGTTTGTGGTTCCTAAT
131 GTTGC-GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * *
16710 CCT-AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTTTCTTCTTTAAGAGACCAATTTTGGTT
195 CCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * *
16774 CTATCAAAAATGACGAGAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTTGCT-TATCCT
260 CTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCG-TGTATCCT
* * * * * * *
16838 AATGAACGCAATGTGTTTTGGCTTCCCAATCTTGAAAGGAGTGGTGATTATTACGAGAATCGATG
324 AACGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATG
* * * * * * *
16903 CTTGTCTTATTCAGGGGATGAACTTTCATTTTAAGGATAAATGGGTAAACAAAAGATTTCCAAGC
389 CTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGC
* *
16968 AAAAGAAAAACATCAATGTCAAT
454 AAAAGAAAATCATCAATGTCATT
*** * * *
16991 TATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACATAAAGAATGAAGATTATTATTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * ***
17056 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAAAGCCTTT
66 TCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTT
* * * *
17121 GTTGCGAAGCCAAGGCATTAATATCATGTATCCTAA
131 GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
17157 AGAGGAAAAA
Statistics
Matches: 4056, Mismatches: 723, Indels: 286
0.80 0.14 0.06
Matches are distributed among these distances:
470 2 0.00
471 9 0.00
472 294 0.07
473 65 0.02
474 510 0.13
475 1268 0.31
476 804 0.20
477 740 0.18
478 146 0.04
479 100 0.02
480 75 0.02
481 40 0.01
482 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (476 bp):
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
TCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGAAAGAAGAAAGCCTTT
GTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTC
TATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAA
CGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCT
TCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAA
AAGAAAATCATCAATGTCATT
Found at i:14367 original size:951 final size:950
Alignment explanation
Indices: 11759--17156 Score: 4308
Period size: 951 Copynumber: 5.7 Consensus size: 950
11749 CAAAATCGTG
* * * * * * *
11759 TATCCTAGTGAGGAGAAGGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTAGTATAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * *
11824 TCCATGTTTGTCGCATTTGAGGTACTAACTTAGACATTACAAAAATTGGTGGGAA-AAATACCTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGAGAAGAAA-GCCTT
* * ** *
11888 TCTTGTGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGCTTATGGTGCCTAAT
130 TGTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
*
11953 CCTGAAAAGAATGGGGATTGGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTGAT
195 CCTGAAAAGAATGGGGATTAGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTGAT
* * * *
12018 TCTATCAAAAAGGGCAGGAAGAAAAGCTTTTTTTGCGACACCAAAGCATCGATGTCGTGTGTCCT
260 TCTATCAAAAAGGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCGTGTGTGCT
* * *
12083 AATGAAGGTAATCTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATA
325 AATG-AGATAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATA
*
12148 CTTCTCTTATTCAAGGGATGGACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGC
389 CTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGC
* * * * * * *
12213 AAAAGAAAATCATCAATGACATTTAT-CTAATGCGAAGAATCTATTTATAGTGCCATATCACAAA
454 AAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAA
* * * * *
12277 AAGAATGAAGATCATTGCTAGAATCTATGTTTGTCTCATTTGAGACAAGAACATAGAATTTGCAA
519 AAGAATGAAGATCATTACTAGAATCTATGTTTATCTCATTTGAGGCACGAACTTAGAATTTGCAA
* *
12342 AAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAACGTCAATATCGTGTATCCTAATGAGAA
584 AAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAA
* * * * *
12407 GACAATGTTTATGATGCCTAATCCTAAAAAGAAT-GGGATTAGTTTGAGTATTCATGTTTGTCTT
649 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTT
* * *
12471 ATTTAAGACACAAACTTTGATTCTATCAAAAATGATGGGAAGAAAAGCTTTTCTTGAGACACCCA
714 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGGAAGAAAAGCTTTTCTTGCGACACCAA
* * * *
12536 AGCATCAATGTTGTGTATCCTAACAAAGGCAATGTGTTTTGGCATCCCAATTTTG-AAAGAAATG
779 AGCATCAATGTCGTGTATCCTAACAAAGG-AAAGT-TTTTGGCTTCCCAATCTTGAAAAG-AATG
* * * * * *
12600 GAGACTGTTACGAGAATTGATGCTTCTCTTATTTAGGGGATGAGCTTTGATTTTAAGGA-AATTT
841 GAGACTATTATGAGAATTGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAA-TT
* * * * *
12664 GGGCGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATTATA
905 GGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATGTCATT
* *
12710 TATCCTACTAT-A-GAGAAAGTGTTTATAGTGCCTTATCACAAAAGGAATGAAGATCATTACTAG
1 TATCCTA--ATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAG
** ** * * *
12773 AATCTGTGTTCATCTCATTTGAGGCACGAACTTAGAATTTACAAAAACTGGAAAGAAGAAAGCCT
64 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGAGAAGAAAGCCT
* * * *
12838 TTGTCT-TGAAACCAAAGCATCAATATTATGTATCCTAATGAGAAAACAATGTTTATGGTGCCTA
129 TTGT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
12902 ATCCTGAAAAGAATGGGGATTAGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTG
193 ATCCTGAAAAGAATGGGGATTAGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTG
*
12967 ATTCTATCAAAAAGGGTAGGG-AGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCGTGTGT
258 ATTCTATCAAAAAGGG-CGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCGTGTGT
* * * *
13031 GCTAATGAAAGTAATGTGTTTTGGCTTCCGACTCTTGAAAAGAATGGAGACTATTACGAGAATCG
322 GCTAATGAGA-TAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
13096 ATACTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCA
386 ATACTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCA
* *
13161 TGCAAAAGAAAATCATCAATGT-TATATATCCTACTGTA-GAGAATGTGTTTATAGTGCCTTATC
451 TGCAAAAGAAAATCATCAATGTCT-TTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTTATC
* * * *
13224 ACAAAAAGAATGAAGATTATTACTAGAATCTGTATTTATCTCATTTGAGGCACGGACTTAGAATT
514 ACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTATCTCATTTGAGGCACGAACTTAGAATT
* * * **
13289 TACAAAAATTGGAAAGAAGAAAGCCTTTATTGTGAAACCAAAGCATCAATATTATGTATCCTAAT
579 TGCAAAAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAAT
* *
13354 GAGAAGACTATGTTTATGGTGCTTAATCCTGAAAAGAATGGGGATTAGTGTGAGTTTTCATCTTT
644 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTT
* ** *
13419 GTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACAATGGGAAGAAAAGCTTTTCTTTCGAC
709 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGGAAGAAAAGCTTTTCTTGCGAC
*
13484 ACCAAAGCATCAATGTCGTGTATCCTAACGAAGGAAACGTCTTTTGGCTTCCCAATCTTGAAAAG
774 ACCAAAGCATCAATGTCGTGTATCCTAACAAAGGAAA-GT-TTTTGGCTTCCCAATCTTGAAAAG
* **
13549 AACGGAGACTATTATGAGAATCAATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATA
837 AATGGAGACTATTATGAGAATTGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATA
* *
13614 ATTGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAACGTCGTT
902 ATTGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATGTCATT
* * *
13663 TATCCTAATGCGGAGAATCTGTTTATTGTGCCTTATCACAAAAAGAATGAAGATCATTA-TAGGA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTA-GA
* * * *
13727 ATCAATGTTTGTCTGATTAGAGGCACGAACTTAGACTTTACAAAAATTGGAGAGAAGAAAGCATT
65 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGAGAAGAAAGCCTT
* * * * *
13792 TGTTGCGAAACCAAGGCTTCAATATCGTGTATCCTAATAAGAAGACTACGTTTATGGTGCCTAAT
130 TGTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * *
13857 CTTGAAAAGAATGGGGATTAGTATGAGTATTCAT-ATTGTCTTATTTTCA-AGACAAAC-TTTGA
195 CCTGAAAAGAATGGGGATTAGTGTGAGTATTTATCTTTGTCTTA-TTTAAGAGACAAACTTTTGA
* * * * * * *
13919 TTCTATCAAAAACGGCGGGAAGGAAAGCTTTTCTTGAGACACCAGAGCATTAATGTCATGTATGC
259 TTCTATCAAAAAGGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCGTGTGTGC
* * **
13984 TAATGATGACAATGTGGTTTGGCTTCCCAATCTTGAAAAGAA-GGCAGACTGTTTGGCA-AATCG
324 TAATGA-GATAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG-AGACTGTTACG-AGAATCG
* * * * * *
14047 ATGCTTGTTTTATTCAAGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
386 ATACTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCA
*
14112 TGCAACAGGAAAA-CATCAATGTCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCA
451 TGCAA-AAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCA
* * *
14176 CAAAAAGAATTAAGATCATTACTAGAATCTATGTTTATCTAATTTGAGGCACGAACTTAGACTTT
515 CAAAAAGAATGAAGATCATTACTAGAATCTATGTTTATCTCATTTGAGGCACGAACTTAGAATTT
* * *** * *
14241 GCAACAACTGGTGGGAAGAAAGCCTTTGTTGCAAAATCAAAGCATCAATATCGTGTATCCTAATG
580 GCAAAAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATG
14306 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATC--TG
645 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTG
* ** *
14369 TCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGCGTGAAGAAAAGCTTTTCTTGCGACA
710 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGGAAGAAAAGCTTTTCTTGCGACA
* * * * * *** * * *
14434 CCGAAGCATCAAAGTCGTGTATTCAAACCAAGGCAAAG-TAAAGGCTTCCTAATCTTGAAAGGAG
775 CCAAAGCATCAATGTCGTGTATCCTAACAAAGG-AAAGTTTTTGGCTTCCCAATCTTGAAAAGAA
* * *
14498 TGGAGACTATTATGAGAATTGATGCTTGTCTTATTCAAGGGATGCACTTTCATTTTGAGGATAAT
839 TGGAGACTATTATGAGAATTGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAAT
* * *
14563 TGGGCAAAGAAAAAATTTCCATGGAAAAGAAAAA-CATCAATGTCAAT
904 TGGGCAAAGAAAAGATTTCCATGCAAAA-AAAAATCATCAATGTCATT
* * *
14610 TATCCTAATGGGGAGAATGTGCTTATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * *
14675 TCCATATTTGTCTCATTTGAGGCGCGAATTTAGACTTTACAACAATTGGTAG-GAAGAAAGCCTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-AGAGAAGAAAGCCTT
* * * * ** *
14739 TGTTGCGAAACCAAAGCATTAATATCATGTATCCTAAAGAGGAA-AATGTGTTTATAATGCCAAA
130 TGTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAA
* *** * * * *** * * * *
14803 TCAC-AAAAAGAATGAAAATCATTAGT-AGAATCCGTATTTGTCTCATTTGAG-GCACGAAC-TT
194 TC-CTGAAAAGAATGGGGATTAGT-GTGAGTATTTATCTTTGTCTTATTTAAGAG-ACAAACTTT
* ** * * * * * * *
14864 AGACTT-TA-CAACAATTGGTGGGAAG-AAAGCCTTTGTTGCGAAACCAAAGC-TTCAATATCAT
256 TGA-TTCTATCAA-AAAGGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATT-GATGTCGT
* * * * * * * * *
14925 GTATCCTAATGAGA-AGACTATATTTATGG-TGCCTAACCCTGAAAAGAATGGAGATTAGTGT--
318 GTGTGCTAATGAGATA-A-TGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACT-GT-TAC
* * * * * * * * *** * *
14986 GAGTATTC-AT-GTTAGTCTTATTTAAGAGATAAACTTGGATTCTATCAAAAACGGTGGG--AAG
378 GAG-AATCGATACTT-CTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAA--TTGGGCAAAG
* * * ** * * * * * * * * *
15047 AAAAGCTTTCCTTGTATCGAAACTAAAGCATCAATATCGTGTATCCTAACGAGAAGACTATGTCT
439 AAAAGATTTCCATG---CAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTGTTT
* * * * ** * * * * * *
15112 ATGGGGCCTAATC-CTGAAAAGAATGGGGATTAGTATTAGTAT-TAATGTTTGTCTTATTTGAGA
501 ATAGTGCCTTATCAC-AAAAAGAATGAAGATCATTACTAGAATCT-ATGTTTATCTCATTTGAG-
* * * * * * ** * *
15175 G-ACAAACTTTGAATCTAT-TAAAAA-TGGCAGGACGAAAATCTTCTCTTGC-AACACCCAAGCA
563 GCACGAACTTAGAAT-T-TGCAAAAATTGGAAAGAAGAAAGCCTT-TGTTGCGAA-ACCAAAGCA
* * * * * *
15236 TCAACATCATGTATCCTAAT-A-AAG-GTAATGTGCTT-TGGCTTCCCAATCTTGAAAAGAATGG
624 TCAATATCGTGTATCCTAATGAGAAGACT-ATGT--TTATGG-TGCCTAATCCTGAAAAGAATGG
* ** * * * ** * ***
15297 AGA-CGGT-TACGAG-AATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
685 GGATTAGTGT--GAGTATTC-ATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
** * * * * ** * * * * *
15359 AGA-GCAAAGAAAAG-ATTTCAATGCAAAAGAAAATCATCAACGTCATTTATCCTAA-AGAGGAG
747 -GATGGGAAGAAAAGCTTTTC-TTGCGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGGA-
* * * ** *** * ** *
15421 AATGTGTTAGTAG-TGCCTTATCACAAAAAGAATGAAAGA-TCATTACT-AGAATCCATGTTTGT
809 AA-GT-TT-TTGGCTTCCCAATCTTGAAAAGAATG-GAGACT-ATTA-TGAGAATTGATGCTTGT
** * * * ** * * **
15483 CTTATTTGAGGCATGAACTTAGA-CTTAACAACAATTGGTG-AGAAG-AAAGCCTTT-GTTGCAA
868 CTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGG-GCA-AAGAAAAG-ATTTCCATGCAA
** * * *
15544 AACCAAAGCATCAATATCATG
930 AAAAAAATCATCAATGTCATT
* * * * * * * ** * * *
15565 TATCCTAACGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAAGAATGGGGATTAGT-GTGAG
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAAGAATGAAGATCATTACT-AG
* * * * * * *
15628 TATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TCCTATCAAAAA-T-GACAGGAAGAAA
64 AATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACT-TTA-CAAAAATTGGAGA-GAAG-AA
* * * * * * * * * *
15689 AGCTTTTCTTGCGACACCAAAGCATCATTATCGTGTATCCCAACGA-AGGTAATATGTTT-CGGC
124 AGCCTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-ACTATGTTTATGG-
* * * * * * ** ** * * * * *
15752 TTCCCAATCTTGAAAAGAGTGGAGACT-GTAAAGACAATCTATGCTTAT-T-GTATTCAAGGGAT
187 TGCCTAATCCTGAAAAGAATGGGGATTAGT-GTGAGTATTTAT-CTT-TGTCTTATTTAAGAGAC
* * ** * * * * * * ** * * ** * **
15814 GAAC-TTTGATTTTAAGGAAAATACGAC--AAAGAAATGATTTCCACGCAAAAGAAAATCATCAA
249 AAACTTTTGATTCT-ATCAAAA-AGGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATTGA
* * * * * * ** *** *
15876 TGTCAAT-TATCCTAATGAGGAGAATGTGTTTATAG-TGCCTTATCACAAAAAGAATGAAGA-TC
312 TGTC-GTGTGTGCTAATGA-GATAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACT-
* * ** ** * * ** * ** * *
15938 ATTACTAGAATCCTTGTTTTTCTCATTTGAGGCATGAACTCAGACTTTACA--ACAATTGGTAG-
373 GTTACGAGAATCGATACTTCTCTTATTCAAGGGATGAACTTTGATTTTA-AGGATAATTGG--GC
* * ** *** * * * * * *
16000 GAAG-AAAGCCTTT-GTTGCAAAACCGAAGCATTAATATCATATATCCTAATGAGGAAAATGTGT
435 AAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTGT
* ** * * * * *
16063 TTGTAGTGCCAAATCACAAAAAGAATGGAA-ATCATTAGTAGAATCCATATTTGTCGCATTTGAG
499 TTATAGTGCCTTATCACAAAAAGAAT-GAAGATCATTACTAGAATCTATGTTTATCTCATTTGAG
* * * * *** * * * *
16127 GCATGAACTTACACTTTACAAAAATTGGCGGGAAGAGAGCTTTTGCTGTGAAACCAAAGC-TCCA
563 GCACGAACTTAGAATTTGCAAAAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCAT-CA
* * *
16191 ATATCATGCATCCTAATGAGAAGACTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAG
627 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * * * * * *
16256 TGTAAGTATTCATGTTTGTGTTATTTAAAAGACAAACTTTGATTCTATCAGAAACGGTGTGAAGA
692 TGTGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGGAAGA
* * * * * *
16321 AAAGCTTTCCTTGCGACACCGAAGCATCAAAGTCGTGTATTCGAACCAAGGCAAAGTGTTTTGGC
757 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAACAAAGG-AAAGT-TTTTGGC
* * *
16386 TTCCCAATCTTG-AAAGAAGTGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATG-
820 TTCCCAATCTTGAAAAGAA-TGGAGACTATTATGAGAATTGATGCTTGTCTTATTCAAGGGATGA
* * ** *
16449 ACTTTCATTTTAAGGATAATTGTGTGAAGAAAAGATTTCCATGCAAAAGAAAAA-CATCAATGTA
884 ACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAA-AAAAATCATCAATGTC
*
16513 AAT
948 ATT
* * *
16516 TATCCGAATGTGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGATGATCATTACTAGAA
1 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * * * * *
16581 TCCATATTTGTCTCATATGAGGCACGAAGTTAGACTTTGCAACAATTGGTGGGAAGAAAGCCTTT
66 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGAGAAGAAAGCCTTT
* * * * * * *
16646 GTT-CTAAAACCAAGGCATCAACATCGTGTATCCTACTGAGAAGACTATGTTTGTGGTTCCTAAT
131 GTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * *
16710 CCT-AAAAGAATGGGGATTAGTGTGAGTATTCATGTTTTTCTTCTTTAAGAGACCAA-TTTTGGT
195 CCTGAAAAGAATGGGGATTAGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTGAT
* * * * * ** * * *
16773 TCTATCAAAAATGACGAGAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTTGCT-TATCC
260 TCTATCAAAAAGGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCG-TGTGTGC
* * * * * *
16837 TAATGA-ACGCAATGTGTTTTGGCTTCCCAATCTTGAAAGGAGTGGTGATTATTACGAGAATCGA
324 TAATGAGA--TAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * * * * * * *
16901 TGCTTGTCTTATTCAGGGGATGAACTTTCATTTTAAGGATAAATGGGTAAACAAAAGATTTCCAA
387 TACTTCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCAT
* ** ***
16966 GCAAAAGAAAAACATCAATGTCAATTATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACA
452 GCAAAAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACA
* * * * * * * * *
17031 TAAAGAATGAAGATTATTATTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTATAC
517 AAAAGAATGAAGATCATTACTAGAATCTATGTTTATCTCATTTGAGGCACGAACTTAGAATTTGC
* * *** * * * *
17096 AACAATTAGTGGGAAGAAAGCCTTTGTTGCGAAGCCAAGGCATTAATATCATGTATCCTAA
582 AAAAATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
17157 AGAGGAAAAA
Statistics
Matches: 3514, Mismatches: 761, Indels: 345
0.76 0.16 0.07
Matches are distributed among these distances:
945 1 0.00
946 8 0.00
947 414 0.12
948 64 0.02
949 250 0.07
950 356 0.10
951 1029 0.29
952 366 0.10
953 605 0.17
954 29 0.01
955 129 0.04
956 155 0.04
957 95 0.03
958 12 0.00
959 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (950 bp):
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGAGAAGAAAGCCTTT
GTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTGAAAAGAATGGGGATTAGTGTGAGTATTTATCTTTGTCTTATTTAAGAGACAAACTTTTGATT
CTATCAAAAAGGGCGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATTGATGTCGTGTGTGCTA
ATGAGATAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATACT
TCTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAA
AAGAAAATCATCAATGTCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAA
GAATGAAGATCATTACTAGAATCTATGTTTATCTCATTTGAGGCACGAACTTAGAATTTGCAAAA
ATTGGAAAGAAGAAAGCCTTTGTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGA
CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATCTTTGTCTTAT
TTAAGAGACAAACTTTGATTCTATCAAAAATGATGGGAAGAAAAGCTTTTCTTGCGACACCAAAG
CATCAATGTCGTGTATCCTAACAAAGGAAAGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGAC
TATTATGAGAATTGATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATTGGGCAA
AGAAAAGATTTCCATGCAAAAAAAAATCATCAATGTCATT
Found at i:17279 original size:158 final size:157
Alignment explanation
Indices: 17009--17313 Score: 452
Period size: 158 Copynumber: 1.9 Consensus size: 157
16999 TGCCAAGAAT
** * * * *
17009 GTGTTTATAGTGCCTTATCACATAAAGAATGAAGATTATTATTAGAATCCATATTTGTCTCATTT
1 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATATTTGTCTCATTT
* * *
17074 GAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAAAGCCTTTGTTGCGAAGCCAAGGCAT
66 GAGGCACGAACTTAGACTATAAAACAATTAGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGC-T
17139 T-AATATCATGTATCCTAAAGAGGAAAAA
130 TCAA-ATCATGTATCCTAAAGAGGAAAAA
*
17167 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATATTTGTCTTATTT
1 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATATTTGTCTCATTT
* * *
17232 GAGGCACGAACTTAGACTTTAAAACTATT-GATGGGAAGAAAGCCTTTGTTGCGAAATCAAAGCT
66 GAGGCACGAACTTAGACTATAAAACAATTAG-TGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCT
17296 TCAAATCATGTATCCTAA
130 TCAAATCATGTATCCTAA
17314 TGAGAAGACT
Statistics
Matches: 132, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
157 17 0.13
158 115 0.87
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (157 bp):
GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATATTTGTCTCATTT
GAGGCACGAACTTAGACTATAAAACAATTAGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCTT
CAAATCATGTATCCTAAAGAGGAAAAA
Found at i:17830 original size:633 final size:633
Alignment explanation
Indices: 16534--17789 Score: 1706
Period size: 633 Copynumber: 2.0 Consensus size: 633
16524 TGTGGAGAAT
** **
16534 GTGTTTATAGTGCCTTATCACAAAAAGAATGATGATCATTACTAGAATCCATATTTGTCTCATAT
1 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTACTAGAATCCATATTTGTCTCATAT
* ** * *
16599 GAGGCACGAAGTTAGACTTTGCAACAATTGGTGGGAAGAAAGCCTTTGTTCTAAAACCAAGGCAT
66 GAGGCACGAACTTAGACTTTAAAACAATTGATGGGAAGAAAGCCTTTGTTCTAAAACCAAAGCAT
* * * * * *
16664 CAACATCGTGTATCCTACTGAGAAGACTATGTTTGTGGTTCCTAATCCTAAAAGAATGGGGATTA
131 CAACATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACCCTAAAAGAATGGGGATTA
** * * ***
16729 GTGTGAGTATTCATGTTTTTCTTCTTTAAGAGACCAATTTTGGTTCTATCAAAAATGACGAGAAG
196 GTGTGAGTATTCATGTTAGTCTTATTTAAAAGACCAAACCTGGTTCTATCAAAAATGACGAGAAG
* * *
16794 AAATGCTTTTCTTGAGACACCAAAGCATCAATGTTGCTTATCCTAATGAACGCAATGTGTTTTGG
261 AAATGCTTTTCTTGAGACACCAAAGCATCAATGTCGCTTATCCTAACGAACGCAACGTGTTTTGG
** * * * *
16859 CTTCCCAATCTTGAAAGGAGTGGTGATTATTACGAGAATCGATGCTTGTCTTATTCAGGGGATGA
326 CTTCCCAATCTTGAAAAAAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGGGATGA
*
16924 ACTTTCATTTTAAGGATAAATGGGTAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAATGTCA
391 ACTTTCATTTTAAGGATAAATGGGCAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAATGTCA
* *
16989 ATTATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACATAAAGAATGAAGATTATTATTAG
456 ATTATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACATAAAGAATGAAGATCATTACTAG
* * *
17054 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAAAGCCT
521 AATCAATATTTGCCTCATTTGAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAAAACCT
** *
17119 TTGTTGCGAAGCCAAGGCATTAATATCATGTATCCTAAAGAGGAAAAA
586 TTGTTGCGAAAACAAAGCATTAATATCATGTATCCTAAAGAGGAAAAA
* * *
17167 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATATTTGTCTTATTT
1 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTACTAGAATCCATATTTGTCTCATAT
* * * *
17232 GAGGCACGAACTTAGACTTTAAAACTATTGATGGGAAGAAAGCCTTTGTTGC-GAAATCAAAGCT
66 GAGGCACGAACTTAGACTTTAAAACAATTGATGGGAAGAAAGCCTTTGTT-CTAAAACCAAAGCA
17296 TCAA-ATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACCCTGAAAAGAATGGAGG-
130 TCAACATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACCCT-AAAAGAATGG-GGA
*
17359 TTAGTGTGAGTATTCATGTTAGTCTTATTTAAAAGA-CAAACCTGGATTCTATCAAAAATGGCGA
193 TTAGTGTGAGTATTCATGTTAGTCTTATTTAAAAGACCAAACCTGG-TTCTATCAAAAATGACGA
* * * *
17423 GAAAGAAA-GCTTTTCTTGTGACACCAAAGCCTTAATGTCG-TGTATCCTAACGAAGGCAACGTG
257 G-AAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTCGCT-TATCCTAACGAACGCAACGTG
* *
17486 TTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAG
320 TTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAG
* * ** * * * *
17551 GGATGAACTTTGATTTTAAGGGTAGCTGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAACATTA
385 GGATGAACTTTCATTTTAAGGATAAATGGGCAAACAAAAGATTTCCAAGCAAAAGAAAAACATCA
* *
17616 ATGTCAATTATCCTAATG-TAGAGAAAT-TGTTTATAGTGCCTTATCAC-TAAAAGAATGATGAT
450 ATGTCAATTATCCTAATGCCA-AG-AATGTGTTTATAGTGCCTTATCACAT-AAAGAATGAAGAT
* * * * *
17678 CATTGCTAGAATCAATATTTGCCTCATTTGAGTCATG-ACTTTAGACTTTACAACAATTGGTGGG
512 CATTACTAGAATCAATATTTGCCTCATTTGAGGCACGAAC-TTAGACTATACAACAATTAGTGGG
*
17742 AAGAAAACCTTTGTTGCGAAAAGAAAGC-TTCAATATCATGTATCCTAA
576 AAGAAAACCTTTGTTGCGAAAACAAAGCATT-AATATCATGTATCCTAA
17790 TGAGAAGACT
Statistics
Matches: 542, Mismatches: 70, Indels: 22
0.85 0.11 0.03
Matches are distributed among these distances:
632 52 0.10
633 478 0.88
634 12 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (633 bp):
GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTACTAGAATCCATATTTGTCTCATAT
GAGGCACGAACTTAGACTTTAAAACAATTGATGGGAAGAAAGCCTTTGTTCTAAAACCAAAGCAT
CAACATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACCCTAAAAGAATGGGGATTA
GTGTGAGTATTCATGTTAGTCTTATTTAAAAGACCAAACCTGGTTCTATCAAAAATGACGAGAAG
AAATGCTTTTCTTGAGACACCAAAGCATCAATGTCGCTTATCCTAACGAACGCAACGTGTTTTGG
CTTCCCAATCTTGAAAAAAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGGGATGA
ACTTTCATTTTAAGGATAAATGGGCAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAATGTCA
ATTATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACATAAAGAATGAAGATCATTACTAG
AATCAATATTTGCCTCATTTGAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAAAACCT
TTGTTGCGAAAACAAAGCATTAATATCATGTATCCTAAAGAGGAAAAA
Found at i:18026 original size:475 final size:474
Alignment explanation
Indices: 17149--19086 Score: 2368
Period size: 475 Copynumber: 4.1 Consensus size: 474
17139 TAATATCATG
* * * ** * *
17149 TATCCTAAAGAGGAAAAAGTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAA
1 TATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * * *
17214 TCCATATTTGTCTTATTTGAGGCACGAACTTAGACTTTAAAACTATTGATGGGAAGAAAGCCTTT
65 TCAATATTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAACAATTGGTGGGAAGAAAGCCTTT
* * * *
17279 GTTGCGAAATCAAAGCTTCAA-ATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACC
130 GTTGCGAAAACAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * *
17343 CTGAAAAGAATGGAGGTTAGTGTGAGTATTCATGTTAGTCTTATTTAAAAGACAAACCTGGATTC
195 CTGAAAAGAATGGA-ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* ** * *
17408 TATCAAAAATGGCGAGAA-AGAAAGCTTTTCTTGTGACACCAAAGCCTTAATGTCGTGTATCCTA
259 TATCAAAAATGGCGGGAAGA-AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTA
* * * *
17472 ACGAAGGCAACGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTGTTAGGAGAATCGATGC
323 ACGAAGACAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
* * ** *
17537 TTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGGTAGCT-GGGCAAAGAAAAGATTTTCATGC
388 TTGTCTTATTCAAGGGATAAACTTTGATTTTAA-GGAAAATAGGGCAAAGAAAAGATTTCCATGC
* *
17601 AAAAGAAAAACATTAATGTCAAT
452 AAAAGAAAATCATCAATGTCAAT
* * *
17624 TATCCTAATGTAGAGAAAT-TGTTTATAGTGCCTTATCACTAAAAGAATGATGATCATTGCTAGA
1 TATCCTAATG-AGAG-AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGA
* * * * *
17688 ATCAATATTTGCCTCATTTGAGTCATG-ACTTTAGACTTTACAACAATTGGTGGGAAGAAAACCT
64 ATCAATATTTGTCTCATTTGAGGCACGAAC-TTAGACTTTAAAACAATTGGTGGGAAGAAAGCCT
* *
17752 TTGTTGCGAAAAGAAAGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
128 TTGTTGCGAAAACAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * *
17817 TCTTGAAAAGAATGGGAATTTGTGTGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGAT
193 TCCTGAAAAGAAT-GGAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * *
17882 TCTATTAGAAATCGG-GGGAAGAAAAGCTTTTCTTGCGAA-A-TATAGCATCAATGTCGTGTGTC
257 TCTATCAAAAAT-GGCGGGAAGAAAAGCTTTTCTTGC-AACACCAAAGCATCAATGTCGTGTATC
* ** *
17944 CTAACGAAGACCATGTGTTTTGGCTTCCCAATCTTGAGCAGAATGGAGACTATTCA-GAGAATCG
320 CTAACGAAGACAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-ATGAGAATCG
* * * *
18008 ATGCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGATAATCGGGCAAAGAAAAGATTTTCA
384 ATGCTTGTCTTATTCAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
*
18073 TGCCAAAA-AAAATCATCAATGTCATT
449 TG-CAAAAGAAAATCATCAATGTCAAT
*
18099 TATCCTAATGCGGAGAATGTGTTT-TAAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGA
1 TATCCTAATG-AGAGAATGTGTTTAT-AGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGA
* *
18163 ATCAATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTAAAACAATTGGTGGGAAGAAAGCCTT
64 ATCAATATTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAACAATTGGTGGGAAGAAAGCCTT
* * * *
18228 TGTTCCG-AAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGATTATGTTTATGGGGCCTAA
129 TGTTGCGAAAAC-AAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * *
18292 TCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGAA
193 TCCTGAAAAGAAT-GGAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * * *
18357 TCTATCAAAAACGGCGGGATGAAAATCTTCTCTTGCAACACTAAAGCATCAACGTCATGTATCCT
257 TCTATCAAAAATGGCGGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCT
** * * *
18422 AATAAAGGA-AATGTGCTTTGGCTTCCCAATCTTGAAAAGAATGGAGACGGTTATGAGAATTGAT
322 AACGAA-GACAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* *
18486 GTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
386 GCTTGTCTTATTCAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * *
18551 CAAAAGAAAATCATCATTATCATT
451 CAAAAGAAAATCATCAATGTCAAT
18575 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAA
* * ** *
18640 TCCATGTTTGTCTCATTCT-AGGCACGAACTTAGACTTTTCAACAATTGGTGGGAAGAAAGCCTG
65 TCAATATTTGTCTCATT-TGAGGCACGAACTTAGACTTTAAAACAATTGGTGGGAAGAAAGCCTT
* * *
18704 TGTTGC-AAAACAAAGCATCAATATCGTGTATCCTAACGAGAAGACTATGTTTATGGTGCCCAAT
129 TGTTGCGAAAACAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
18768 -CT--------T-GAA--A-----AG-A---ATG--TGTCTTATTTAAGAGACAAACTTTGATTC
194 CCTGAAAAGAATGGAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
** * * *
18810 TATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCATTGTTGTGTATCCTAA
259 TATCAAAAATGGCGGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAA
* * * * * * *
18875 CGAAGGCAATATGTTTTGGCTTCCCAATCTTAAAAAGAATAGAGACTGTAATGAAAATCGATCCT
324 CGAAGACAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* * * * *
18940 TATCATATTCAAGGGATAAACATTGATTTTAAGGAAAATATGACAAAGAAAAGATTTCCATGCAA
389 TGTCTTATTCAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
19005 AAGAAAATCATCAATGTCAAT
454 AAGAAAATCATCAATGTCAAT
* *
19026 TATCATAATGAAGAGAATGTGTTTATAGTTCCTTATCACAAAAAGAATGAAGATCATTACT
1 TATCCTAATG-AGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACT
19087 GATGACAACC
Statistics
Matches: 1280, Mismatches: 156, Indels: 78
0.85 0.10 0.05
Matches are distributed among these distances:
450 1 0.00
451 265 0.21
452 1 0.00
453 3 0.00
456 1 0.00
457 2 0.00
462 1 0.00
464 2 0.00
466 1 0.00
474 18 0.01
475 571 0.45
476 403 0.31
477 11 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TATCCTAATGAGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
CAATATTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAACAATTGGTGGGAAGAAAGCCTTTG
TTGCGAAAACAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
TGAAAAGAATGGAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
TCAAAAATGGCGGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAACG
AAGACAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
TCTTATTCAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
GAAAATCATCAATGTCAAT
Found at i:18063 original size:633 final size:631
Alignment explanation
Indices: 16534--18024 Score: 1415
Period size: 633 Copynumber: 2.4 Consensus size: 631
16524 TGTGGAGAAT
** ** * * *
16534 GTGTTTATAGTGCCTTATCACAAAAAGAATGATGATCATTACTAGAATCCATATTTGTCTCATAT
1 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAAT-ATTAGTAGAATCCATATTTGTCTTATTT
* * * ** * * * * *
16599 GAGGCACGAAGTTAGACTTTGCAACAATTG-GTGGGAAGAAAGCCTTTGTT-CTAAAACCAAGGC
65 AAGGCACAAACTTAGACTTTAAAAC-ATCGAG-GGGAAGAAAGCCTTTCTTGC-GAAATCAAAGC
* * * * * * * * *
16662 ATCAACATCGTGTATCCTACTGAGAAGACTATGTTTGTGGTTCCTAATCCT-AAAAGAATGGGGA
127 ATCAA-ATCATGTATCCTA-AGAGAAGACCATATTTATGGTGCCCAACCCTGAAAAGAATGGAGA
* ** * ** * * * *** * *
16726 TTAGTGTGAGTATTCATGTTTTTCTTCTTTAAGAGACCAATTTTGG-TTCTATCAAAAATGACGA
190 CTAGTCAGAGTAATCATGTTAGTCTTATTCAAAAGA-CAAACCTGGATTCTAACAAAAATGGCGA
* * * *
16790 -GAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTTGCTTATCCTAATGAACGCAATGTGT
254 CAAAGAAATGCTTTTCTTGAGACACCAAAGCATCAATGTCGCTTATCCTAACGAACGCAACGTGT
** * * * *
16854 TTTGGCTTCCCAATCTTGAAAGGAGTGGTGATTATTACGAGAATCGATGCTTGTCTTATTCAGGG
319 TTTGGCTTCCCAATCTTGAAAAAAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGG
*
16919 GATGAACTTTCATTTTAAGGATAAATGGGTAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAA
384 GATGAACTTTCATTTTAAGGATAAATGGGCAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAA
*
16984 TGTCAATTATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACATAAAGAATGAAGATTATT
449 TGTCAATTATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACATAAAGAATGAAGATCATT
* * *
17049 ATTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAA
514 ACTAGAATCAATATTTGCCTCATTTGAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAA
* ** *
17114 AGCCTTTGTTGCGAAGCCAAGGCATTAATATCATGTATCCTAAAGAGGAAAAA
579 AACCTTTGTTGCGAAAACAAAGCATTAATATCATGTATCCTAAAGAGGAAAAA
17167 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATATTTGTCTTATTT
1 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAAT-ATTAGTAGAATCCATATTTGTCTTATTT
* * * * * *
17232 GAGGCACGAACTTAGACTTTAAAACTATTGATGGGAAGAAAGCCTTTGTTGCGAAATCAAAGCTT
65 AAGGCACAAACTTAGACTTTAAAAC-ATCGAGGGGAAGAAAGCCTTTCTTGCGAAATCAAAGCAT
* * **
17297 CAAATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACCCTGAAAAGAATGGAGGTTA
129 CAAATCATGTATCCTAA-GAGAAGACCATATTTATGGTGCCCAACCCTGAAAAGAATGGAGACTA
** * * * *
17362 GTGTGAGTATTCATGTTAGTCTTATTTAAAAGACAAACCTGGATTCTATCAAAAATGGCGAGAAA
193 GTCAGAGTAATCATGTTAGTCTTATTCAAAAGACAAACCTGGATTCTAACAAAAATGGCGACAAA
* * * *
17427 GAAA-GCTTTTCTTGTGACACCAAAGCCTTAATGTCG-TGTATCCTAACGAAGGCAACGTGTTTT
258 GAAATGCTTTTCTTGAGACACCAAAGCATCAATGTCGCT-TATCCTAACGAACGCAACGTGTTTT
* *
17490 GGCTTCCCAATCTTGAAAAAAATGGAGACTGTTAGGAGAATCGATGCTTGTCTTATTCAAGGGAT
322 GGCTTCCCAATCTTGAAAAAAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGGGAT
* * ** * * * *
17555 GAACTTTGATTTTAAGGGTAGCTGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAACATTAATGT
387 GAACTTTCATTTTAAGGATAAATGGGCAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAATGT
* *
17620 CAATTATCCTAATG-TAGAGAAAT-TGTTTATAGTGCCTTATCAC-TAAAAGAATGATGATCATT
452 CAATTATCCTAATGCCA-AG-AATGTGTTTATAGTGCCTTATCACAT-AAAGAATGAAGATCATT
* * * * *
17682 GCTAGAATCAATATTTGCCTCATTTGAGTCATG-ACTTTAGACTTTACAACAATTGGTGGGAAGA
514 ACTAGAATCAATATTTGCCTCATTTGAGGCACGAAC-TTAGACTATACAACAATTAGTGGGAAGA
* * *
17746 AAACCTTTGTTGCGAAAAGAAAGC-TTCAATATCATGTATCCTAATGA-GAAGACTA
578 AAACCTTTGTTGCGAAAACAAAGCATT-AATATCATGTATCCTAAAGAGGAA-A-AA
* * *** ** * * * *
17801 -TGTTTATGGTGCCTAATCTTGAAAAGAATGGGAAT-TTGTGTGAGTATTCATGTTTGTCTTATT
1 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATATT-AGT-AGAATCCATATTTGTCTTATT
* * * * *
17864 TAAGAG-ATAAACTTTGATTCTATTAGAA-ATCG-GGGGAAGAAAAGCTTTTCTTGCGAAAT-AT
64 TAAG-GCACAAACTTAGA--CT-TTAAAACATCGAGGGGAAG-AAAGCCTTTCTTGCGAAATCAA
* * * * * * * * * **
17925 AGCATCAATGTCGTGTGTCCTAA-CGAAGACCATGTGTTTTGGCTTCCCAATCTTGAGCAGAATG
124 AGCATCAA-ATCATGTATCCTAAGAGAAGACCATAT-TTATGG-TGCCCAACCCTGAAAAGAATG
*
17989 GAGACTATTCAGAG-AATCGATGCTT-GTCTTATTCAA
186 GAGACTAGTCAGAGTAATC-ATG-TTAGTCTTATTCAA
18025 GGGATGAACT
Statistics
Matches: 715, Mismatches: 117, Indels: 51
0.81 0.13 0.06
Matches are distributed among these distances:
631 2 0.00
632 65 0.09
633 559 0.78
634 80 0.11
635 4 0.01
636 5 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (631 bp):
GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATATTAGTAGAATCCATATTTGTCTTATTTA
AGGCACAAACTTAGACTTTAAAACATCGAGGGGAAGAAAGCCTTTCTTGCGAAATCAAAGCATCA
AATCATGTATCCTAAGAGAAGACCATATTTATGGTGCCCAACCCTGAAAAGAATGGAGACTAGTC
AGAGTAATCATGTTAGTCTTATTCAAAAGACAAACCTGGATTCTAACAAAAATGGCGACAAAGAA
ATGCTTTTCTTGAGACACCAAAGCATCAATGTCGCTTATCCTAACGAACGCAACGTGTTTTGGCT
TCCCAATCTTGAAAAAAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGGGATGAAC
TTTCATTTTAAGGATAAATGGGCAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAATGTCAAT
TATCCTAATGCCAAGAATGTGTTTATAGTGCCTTATCACATAAAGAATGAAGATCATTACTAGAA
TCAATATTTGCCTCATTTGAGGCACGAACTTAGACTATACAACAATTAGTGGGAAGAAAACCTTT
GTTGCGAAAACAAAGCATTAATATCATGTATCCTAAAGAGGAAAAA
Found at i:24459 original size:710 final size:710
Alignment explanation
Indices: 23100--25210 Score: 4060
Period size: 710 Copynumber: 3.0 Consensus size: 710
23090 CCTTGGCTAA
*
23100 GCTACCCAAGAGACGCCTCACCATAAGCAAGTCTCCCTCGTGGCATAAAGCCTCACACTCGCCAT
1 GCTACCCAAGAGACGCCTCACCATAAGCAAGTCTCCCTCGTGGCATAAAGCCTCACACTCGCTAT
23165 CTTCTTCACTTGAAGCATCTAATGATGGAGATGAAGTTGCACTAGAGACCTCACCATTCTCCCTT
66 CTTCTTCACTTGAAGCATCTAATGATGGAGATGAAGTTGCACTAGAGACCTCACCATTCTCCCTT
23230 AAAATCATGGTCTTCTTGTTAGGACATTGGGATGCAATGTGACCCTTTCCAAGGCATTTGAAGCA
131 AAAATCATGGTCTTCTTGTTAGGACATTGGGATGCAATGTGACCCTTTCCAAGGCATTTGAAGCA
23295 TTTGATTTCCCTATGCCTAGAAGTAGAAGGATTAGTAGAATTAAAAGAAGACTTAGTTGAGGATT
196 TTTGATTTCCCTATGCCTAGAAGTAGAAGGATTAGTAGAATTAAAAGAAGACTTAGTTGAGGATT
*
23360 TACTACTTTGGACAGCCGCATCCATAGCTGAAGTTCCCTCCTTCTTCACTCCTTCTTTCCATCCT
261 TACTACTTTGGACAGCCGCATCCATAGCTGAAGTTCCCTCCTTCTTCACTCCTTCCTTCCATCCT
23425 TTAGAGTTGTAAGAAGTGGTGCTTTTCTTCAAAGTCCCCTTTCTTTTGAGTTGTGCTTCGACTTT
326 TTAGAGTTGTAAGAAGTGGTGCTTTTCTTCAAAGTCCCCTTTCTTTTGAGTTGTGCTTCGACTTT
*
23490 GATAGCTTGGTGAACCAAATCTTCAAGTTCTACATGGGGATGGAGTTCCACTATGTCACAGATAT
391 GATAGCTTGGTGAACCAAATCTTCAAGTTCTACATGGGGATGGAGTTCCACTATGTCACGGATAT
*
23555 CATGATTCAACCCATTCAAGAAACGAGCCATTGTTGCTTCTCTTTCTTCAATTACATTGGCTCTT
456 CATGATTCAACCCATTCAAGAAACGGGCCATTGTTGCTTCTCTTTCTTCAATTACATTGGCTCTT
23620 ATCATGGCAACTTCCATTTCTTTGTAATAGTCATCGACACTTTTTCCACCTTGCCTCAAACCTTG
521 ATCATGGCAACTTCCATTTCTTTGTAATAGTCATCGACACTTTTTCCACCTTGCCTCAAACCTTG
*
23685 AAGTTTTGTATGAAGCTCCCTATTGTAGTAGGTAGGAACAAATCTTCTGTGCATTAGGTTCTTCA
586 AAGCTTTGTATGAAGCTCCCTATTGTAGTAGGTAGGAACAAATCTTCTGTGCATTAGGTTCTTCA
23750 TTTCATCCCATGTGGCTACGGGCTGCTCATCAAAACTTCTTTTCATTAGGTTCTTCATAT
651 TTTCATCCCATGTGGCTACGGGCTGCTCATCAAAACTTCTTTTCATTAGGTTCTTCATAT
*
23810 GCTACCCAAGAGACGCCTCACCATATGCAAGTCTCCCTCGTGGCATAAAGCCTCACACTCGCTAT
1 GCTACCCAAGAGACGCCTCACCATAAGCAAGTCTCCCTCGTGGCATAAAGCCTCACACTCGCTAT
23875 CTTCTTCACTTGAAGCATCTAATGATGGAGATGAAGTTGCACTAGAGACCTCACCATTCTCCCTT
66 CTTCTTCACTTGAAGCATCTAATGATGGAGATGAAGTTGCACTAGAGACCTCACCATTCTCCCTT
23940 AAAATCATGGTCTTCTTGTTAGGACATTGGGATGCAATGTGACCCTTTCCAAGGCATTTGAAGCA
131 AAAATCATGGTCTTCTTGTTAGGACATTGGGATGCAATGTGACCCTTTCCAAGGCATTTGAAGCA
24005 TTTGATTTCCCTATGCCTAGAAGTAGAAGGATTAGTAGAATTAAAAGAAGACTTAGTTGAGGATT
196 TTTGATTTCCCTATGCCTAGAAGTAGAAGGATTAGTAGAATTAAAAGAAGACTTAGTTGAGGATT
*
24070 TACTACTTTGGACAGCCGCATCCATAGCTGAAGTTCCCTCCTTCTTCACTCCTTCCTTCCATCAT
261 TACTACTTTGGACAGCCGCATCCATAGCTGAAGTTCCCTCCTTCTTCACTCCTTCCTTCCATCCT
24135 TTAGAGTTGTAAGAAGTGGTGCTTTTCTTCAAAGTCCCCTTTCTTTTGAGTTGTGCTTCGACTTT
326 TTAGAGTTGTAAGAAGTGGTGCTTTTCTTCAAAGTCCCCTTTCTTTTGAGTTGTGCTTCGACTTT
24200 GATAGCTTGGTGAACCAAATCTTCAAGTTCTACATGGGGATGGAGTTCCACTATGTCACGGATAT
391 GATAGCTTGGTGAACCAAATCTTCAAGTTCTACATGGGGATGGAGTTCCACTATGTCACGGATAT
24265 CATGATTCAACCCATTCAAGAAACGGGCCATTGTTGCTTCTCTTTCTTCAATTACATTGGCTCTT
456 CATGATTCAACCCATTCAAGAAACGGGCCATTGTTGCTTCTCTTTCTTCAATTACATTGGCTCTT
* *
24330 ATCATGGCAACTTCCATTTTTTTGTAATAGTCATCGACACTTTTTCCACCTTGCCTCAAACCTTA
521 ATCATGGCAACTTCCATTTCTTTGTAATAGTCATCGACACTTTTTCCACCTTGCCTCAAACCTTG
24395 AAGCTTTGTATGAAGCTCCCTATTGTAGTAGGTAGGAACAAATCTTCTGTGCATTAGGTTCTTCA
586 AAGCTTTGTATGAAGCTCCCTATTGTAGTAGGTAGGAACAAATCTTCTGTGCATTAGGTTCTTCA
* * *
24460 TTTCATCCCGTGTGGCTGCGGGTTGCTCATCAAAACTTCTTTTCATTAGGTTCTTCATAT
651 TTTCATCCCATGTGGCTACGGGCTGCTCATCAAAACTTCTTTTCATTAGGTTCTTCATAT
* *
24520 GCTACCCAAGAGATGCCTCACCATAAGCAAGTCTCCCTCGTGGCATAAAGCCTCACACTCGTTAT
1 GCTACCCAAGAGACGCCTCACCATAAGCAAGTCTCCCTCGTGGCATAAAGCCTCACACTCGCTAT
24585 CTTCTTCACTTGAAGCATCTAATGATGGAGATGAAGTTGCACTAGAGACCTCACCATTCTCCCTT
66 CTTCTTCACTTGAAGCATCTAATGATGGAGATGAAGTTGCACTAGAGACCTCACCATTCTCCCTT
24650 AAAATCATGGTCTTCTTGTTAGGACATTGGGATGCAATGTGACCCTTTCCAAGGCATTTGAAGCA
131 AAAATCATGGTCTTCTTGTTAGGACATTGGGATGCAATGTGACCCTTTCCAAGGCATTTGAAGCA
24715 TTTGATTTCCCTATGCCTAGAAGTAGAAGGATTAGTAGAATTAAAAGAAGACTTAGTTGAGGATT
196 TTTGATTTCCCTATGCCTAGAAGTAGAAGGATTAGTAGAATTAAAAGAAGACTTAGTTGAGGATT
*
24780 TACTACTTTGGACAGCCGCATCCATAGCTGAAGTTCCCTCTTTCTTCACTCCTTCCTTCCATCCT
261 TACTACTTTGGACAGCCGCATCCATAGCTGAAGTTCCCTCCTTCTTCACTCCTTCCTTCCATCCT
24845 TTAGAGTTGTAAGAAGTGGTGCTTTTCTTCAAAGTCCCCTTTCTTTTGAGTTGTGCTTCGACTTT
326 TTAGAGTTGTAAGAAGTGGTGCTTTTCTTCAAAGTCCCCTTTCTTTTGAGTTGTGCTTCGACTTT
24910 GATAGCTTGGTGAACCAAATCTTCAAGTTCTACATGGGGATGGAGTTCCACTATGTCACGGATAT
391 GATAGCTTGGTGAACCAAATCTTCAAGTTCTACATGGGGATGGAGTTCCACTATGTCACGGATAT
24975 CATGATTCAACCCATTCAAGAAACGGGCCATTGTTGCTTCTCTTTCTTCAATTACATTGGCTCTT
456 CATGATTCAACCCATTCAAGAAACGGGCCATTGTTGCTTCTCTTTCTTCAATTACATTGGCTCTT
*
25040 ATCATGGCAACTTCCATTTCTTTGTAATAGTCATCGACATTTTTTCCACCTTGCCTCAAACCTTG
521 ATCATGGCAACTTCCATTTCTTTGTAATAGTCATCGACACTTTTTCCACCTTGCCTCAAACCTTG
*
25105 AAGCTTTGTATGAAGCTCCCTATTGTAGTAGGTAGGAACAAATCTTCTATGCATTAGGTTCTTCA
586 AAGCTTTGTATGAAGCTCCCTATTGTAGTAGGTAGGAACAAATCTTCTGTGCATTAGGTTCTTCA
*
25170 TTTCATCCCATGTGGCTAAGGGCTGCTCATCAAAACTTCTT
651 TTTCATCCCATGTGGCTACGGGCTGCTCATCAAAACTTCTT
25211 CTGTCTTTTT
Statistics
Matches: 1376, Mismatches: 25, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
710 1376 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (710 bp):
GCTACCCAAGAGACGCCTCACCATAAGCAAGTCTCCCTCGTGGCATAAAGCCTCACACTCGCTAT
CTTCTTCACTTGAAGCATCTAATGATGGAGATGAAGTTGCACTAGAGACCTCACCATTCTCCCTT
AAAATCATGGTCTTCTTGTTAGGACATTGGGATGCAATGTGACCCTTTCCAAGGCATTTGAAGCA
TTTGATTTCCCTATGCCTAGAAGTAGAAGGATTAGTAGAATTAAAAGAAGACTTAGTTGAGGATT
TACTACTTTGGACAGCCGCATCCATAGCTGAAGTTCCCTCCTTCTTCACTCCTTCCTTCCATCCT
TTAGAGTTGTAAGAAGTGGTGCTTTTCTTCAAAGTCCCCTTTCTTTTGAGTTGTGCTTCGACTTT
GATAGCTTGGTGAACCAAATCTTCAAGTTCTACATGGGGATGGAGTTCCACTATGTCACGGATAT
CATGATTCAACCCATTCAAGAAACGGGCCATTGTTGCTTCTCTTTCTTCAATTACATTGGCTCTT
ATCATGGCAACTTCCATTTCTTTGTAATAGTCATCGACACTTTTTCCACCTTGCCTCAAACCTTG
AAGCTTTGTATGAAGCTCCCTATTGTAGTAGGTAGGAACAAATCTTCTGTGCATTAGGTTCTTCA
TTTCATCCCATGTGGCTACGGGCTGCTCATCAAAACTTCTTTTCATTAGGTTCTTCATAT
Found at i:25479 original size:9 final size:9
Alignment explanation
Indices: 25467--25527 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
25457 CTCTCTCTAT
25467 TATCTCTCC
1 TATCTCTCC
25476 TATCTCTCC
1 TATCTCTCC
* *
25485 T-CCTAT-C
1 TATCTCTCC
* *
25492 -ATCCCTTC
1 TATCTCTCC
*
25500 TATCTCTAC
1 TATCTCTCC
25509 TATCTCTCC
1 TATCTCTCC
25518 TATCTCTCC
1 TATCTCTCC
25527 T
1 T
25528 CCTATCATCC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (9 bp):
TATCTCTCC
Found at i:25485 original size:42 final size:42
Alignment explanation
Indices: 25439--25557 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
25429 TTCTTCTTTC
* * *
25439 CTCCTCCTGTCATTCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTATCTCTCCTATCT
* *
25481 CTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTATCTCTCCTATCT
* *
25523 CTCCTCCTATCATCCCTCCTATCTCTTTTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTATCTCT
25558 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.11, C:0.43, G:0.01, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTATTATCTCTCCTATCT
Found at i:25487 original size:12 final size:12
Alignment explanation
Indices: 25472--25548 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 12
25462 TCTATTATCT
25472 CTCCTATCTCTC
1 CTCCTATCTCTC
25484 CTCCTATCATC-C
1 CTCCTATC-TCTC
*
25496 CTTCTA--TCT-
1 CTCCTATCTCTC
*
25505 CTACTA--TCT-
1 CTCCTATCTCTC
25514 CTCCTATCTCTC
1 CTCCTATCTCTC
25526 CTCCTATCATC-C
1 CTCCTATC-TCTC
25538 CTCCTATCTCT
1 CTCCTATCTCT
25549 TTTTTCTCTT
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
9 15 0.27
11 5 0.09
12 31 0.56
13 4 0.07
ACGTcount: A:0.13, C:0.45, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:27466 original size:158 final size:158
Alignment explanation
Indices: 27173--27495 Score: 479
Period size: 158 Copynumber: 2.0 Consensus size: 158
27163 ATGTCTTTTT
* * * **
27173 ATCCTAATGAGGAGATTCTGTTTATAGTGCCTTATCACAAAAAGAATGAAAACCATTACTAGAAT
1 ATCCTAAAGAGGAAAATCTGTTTATAGTGCCAAATCACAAAAAGAATGAAAACCATTACTAGAAT
* *
27238 CCATATTTATCTCATTTGGGGCATGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
66 CCATATTTATCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
27303 TTGCGAAACCAAAGCATT-AATATCATGC
131 TTGCGAAACCAAAGC-TTCAATATCATGC
* * * *
27331 ATCCTAAAGAGGAAAATGTGTTTATAGTGCCAAATCACAAAGAGAATGAAAATCATTAGTAGAAT
1 ATCCTAAAGAGGAAAATCTGTTTATAGTGCCAAATCACAAAAAGAATGAAAACCATTACTAGAAT
* * *
27396 CCATATTTGTCTCATTTGAGGCACGAACTTGGACTTTATAACAATTGGTGGGAAGAAAGCCTTT-
66 CCATATTTATCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
*
27460 TCTGCGAAACCAAAGCTTCAATATCATGT
131 T-TGCGAAACCAAAGCTTCAATATCATGC
27489 ATCCTAA
1 ATCCTAA
27496 TGAGAAGACT
Statistics
Matches: 148, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
157 3 0.02
158 145 0.98
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (158 bp):
ATCCTAAAGAGGAAAATCTGTTTATAGTGCCAAATCACAAAAAGAATGAAAACCATTACTAGAAT
CCATATTTATCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
TTGCGAAACCAAAGCTTCAATATCATGC
Found at i:28346 original size:476 final size:474
Alignment explanation
Indices: 27331--30383 Score: 3901
Period size: 475 Copynumber: 6.4 Consensus size: 474
27321 AATATCATGC
* * ** * * *
27331 ATCCTAAAGAGGAAAATGTGTTTATAGTGCCAAATCACAAAGAGAATGAAAATCATTAGTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
* * *
27396 CCATATTTGTCTCATTTGAGGCACGAACTTGGACTTTATAACAATTGGTGGGAAGAAAGCCTTT-
66 CCATGTTTG-CTCATTTGAGGCAC-AACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
* * * * *
27460 TCTGCGAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACC
129 T-TGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * ** *
27525 CTGAAAAAAATAGAGATTAGTGTGAGTATTTATGTTAGTCTTATTTAAGAGACAAAC-TTAGATT
193 CTGAAAAGAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTA-ATT
* ** ** *
27589 CTATAAAAAACG-GTGAGAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCGTGTATCCT
257 CTATCAAAAACGACAG-GAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCT
* ** *
27653 AATGAAGGCAATGCGTTTTGGCTTCCCAA-CTTGAACAA-AATGGAGACTGTTAGGAGAATCGAT
321 AATGAAGGTAATATGTTTTGGCTTCCCAATCTTGAA-AAGAATGGAGACTGTTATGAGAATCGAT
* **
27716 GCTTGTCTTATTCAAGGGATAAACTTTGATTTTAAGGATATTTAG-GCAAAGAAAAGATTTCCAT
385 GCTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGA-AAATAGAGCAAAGAAAAGATTTCCAT
* * **
27780 GTAAAAGAAAAGCATCAATGTCAAAT
449 GCAAAAGAAAATCATCAATGTCATTT
* * * * *
27806 ATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATAACAAAAAGAATGATGGTGATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
* * *
27871 CCAT-TATTGCATCATTTGAGGCACAACCTTAGACCTTACAACAATTAGTGGGAAGAAAACCTTT
66 CCATGT-TTGC-TCATTTGAGGCACAA-CTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTT
* * * *
27935 GTTGCAAAACTAAAGCATCAATATCGTGTATCCTAACGAGAAGACTATGTCTATGGGGCCTAATC
128 GTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * ** *
28000 TTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTAAATC
193 CTGAAAAGAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTAATTC
* * * * *
28065 TATCAAAAATGAC-GCGACA-AAAATCTTCTCTTGCAACACCAAAGCATCAACGTCATGTATCCT
258 TATCAAAAACGACAG-GA-AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCT
* * * * *
28128 AATAAAGGCAATGTGCTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
321 AATGAAGGTAATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATG
* * *
28193 TTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGC
386 CTTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGC
28258 AAAAGAAAATCATCAATGTCATTT
451 AAAAGAAAATCATCAATGTCATTT
* * *
28282 ATCCTAAAGAAGAAAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
* * * *
28347 CCACGTTTATCTCATTTGAGGTACGAACTTAGACTTTACAACAATTGGTGAGAAGAAAGCCTTTG
66 CCATGTTT-GCTCATTTGAGGCAC-AACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
* * * *
28412 TTGCAAAACCAAAGTATCAATATCGTGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCT
129 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
*
28477 TGAAAAGAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTTATTCT
194 TGAAAAGAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCT
* * ** * * *
28542 ATCAAAAATGACTGGAAGAAAAGAATTTCTTGCAACACCAAAGCATCATTGTCATGTATCCTAAC
259 ATCAAAAACGACAGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAAT
* * * *
28607 GAAGGTAATATGTTTCGGCTTCCCAATCTTGAAAAGAATGGAGACTGTAATGAAAATCTATGCTT
324 GAAGGTAATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
* * * ** * ** *
28672 ATCGTATTCAAGGGGTGAACTTTTTTTTTAAGGAAAATACAGCAAAGAAATCATTTCCACGCAAA
389 GTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAA
*
28737 AGAAAATCATCAATGTCAATT
454 AGAAAATCATCAATGTCATTT
* * *
28758 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATAAGTATAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
* * * *
28823 CCATGTTTTTCTCATTTTAGGCATGAACATAGACTTTACAACAATTGGTGGGAAGAAAG-CTATT
66 CCATG-TTTGCTCATTTGAGGCA-CAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCT-TT
* * *
28887 GTTGCAAGACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATATGTCTATGGTGCCTAATC
128 GTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * *
28952 CTG-AAAGATTAGGGATTAGTTTGAGTATCCATGTTTGTCTTATTTAAGGGACAAAATTTTATTC
193 CTGAAAAGAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTAATTC
* * *
29016 TATCAAAAACGACAGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCATTATCGTGTATCCTAA
258 TATCAAAAACGACAGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAA
* * * * *
29081 TAAAGGTAATATATTTTGGCTTCCCTATCTTAAAAAGAATGGAGACGGTTATGAGAATCGAT-CT
323 TGAAGGTAATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* *
29145 TGTCTTACTT-AAGGGATAAACTTTGATTTTAAGGAAAATAG-GACAAAGAAAAGATTTCTATGC
388 TGTCTTA-TTCAAGGGATGAACTTTGATTTTAAGGAAAATAGAG-CAAAGAAAAGATTTCCATGC
*
29208 AAAAGAAAAACATCAATGTCATTT
451 AAAAGAAAATCATCAATGTCATTT
29232 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
* * * * * * *
29297 CCATGTTTGTCTCATTGGAAGCATGAACTTAGACTTTACCAGAATTGGTGAGAAGAAAACCTTTG
66 CCATGTTTG-CTCATTTGAGGCA-CAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
* ** * *
29362 TCGTGAAACCAAAGCATCAATATCATGTATTCTAAT--G-AGA-TATGTTTATGGTGCCTAATCC
129 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
29423 TGAAAATAAT-GGGATTAGTGTG-GCTATTCATGTTTGTCTTGTTTAAAAGACAAACTTTGATTC
194 TGAAAAGAATGGGGATTAGTGTGAG-TATCCATGTTTGTCTTATTTAAGAGACAAACTTTAATTC
* * * ** * *
29486 TGTAAAAAATG-GTGAGAAGAAAAGCTTTTCTTGCAACACTAAAGCATCAATGTCGTGTATTCTA
258 TATCAAAAACGACAG-GAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTA
** * *
29550 ATGAAGGTAATATGTTTCAGCTTCCCAATCTTGAAAAGAATGGAGACTGTAATGAAAATCGATGC
322 ATGAAGGTAATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
* * * *
29615 TTATCGTATTCAGGGGATGAACTTTGATTTTAAGCAAAATACGA-CAAAGAAAAGATTTCCATGC
387 TTGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATA-GAGCAAAGAAAAGATTTCCATGC
*
29679 AAAAGAAAATCATCACTGTCATTT
451 AAAAGAAAATCATCAATGTCATTT
* **
29703 TTCCTAAACAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
* *
29768 CCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
66 CCATGTTT-GCTCATTTGAGGCA-CAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTG
* * *
29833 TTGCAAAAGCAAACCATCAATATCGTGTATCCTAATGAGAAGACTATGTCTATGGTGCCTAATCC
129 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * *
29898 TG-AAAGATTGGGGATTGGTTTGAGTATCCATGTTTTTCTTATTTAAGGGACAAACTTTGATTCT
194 TGAAAAGAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCT
* * * * *
29962 ATCAAAAACAACAGGAAGAAAAGCTTTTCTTACGACACCAAAGCAGCATTGTCGTGTATCCTAAT
259 ATCAAAAACGACAGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAAT
* *
30027 GAAGGTAATATATTTTGGCTTCCCTATCTTGAAAAGAATGGAGA-TGGTTATGAGAATCGATGCT
324 GAAGGTAATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT-GTTATGAGAATCGATGCT
* *
30091 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
388 TGTCTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAA
*
30156 AAGAAAAACATCAATGTCATTT
453 AAGAAAATCATCAATGTCATTT
30178 ATCCTAATGAGGAGAATGTGTTTATTA-TGCCTTATCACAAAAAAGAATGAAGATCATTACTAGA
1 ATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTTATCAC-AAAAAGAATGAAGATCATTACTAGA
*
30242 ATCCATGTTTGTCTCATTCT-TGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCT
64 ATCCATGTTTG-CTCATT-TGAGGCAC-AACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCT
* * * * *
30306 GTGCTGCAAAA-CAAAGCATCAATATCATGTATCCTAACGAGAAGACTATGTTTATGGTGCCCAA
126 TTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
*
30370 TCTTGAAAAGAATG
191 TCCTGAAAAGAATG
30384 TGTCTTATTT
Statistics
Matches: 2241, Mismatches: 292, Indels: 89
0.85 0.11 0.03
Matches are distributed among these distances:
469 2 0.00
470 174 0.08
471 231 0.10
472 2 0.00
473 5 0.00
474 226 0.10
475 801 0.36
476 791 0.35
477 9 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (474 bp):
ATCCTAATGAGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAAT
CCATGTTTGCTCATTTGAGGCACAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTT
GCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
AAAAGAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTAT
CAAAAACGACAGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCGTGTATCCTAATGA
AGGTAATATGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
CTTATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAG
AAAATCATCAATGTCATTT
Found at i:30993 original size:665 final size:663
Alignment explanation
Indices: 29810--31042 Score: 1805
Period size: 665 Copynumber: 1.9 Consensus size: 663
29800 ACTTTACAAC
* * *
29810 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAAGCAAACCATCAATATCGTGTATCCTAATGAGAAG
1 AATTGGTGAGAAGAAAGCCTTTGTCGCAAAACCAAACCATCAATATCGTGTATCCTAATGAGAAG
* * * * * *
29875 ACTATGTCTATGGTGCCTAATCCTGAAAGATTGGGGATTGGTTTGAGTATCCATGTTTTTCTTAT
66 ACTATGTCTATGGTGCCTAATCCTAAAACAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTAT
** * * *
29940 TTAAGGGACAAACTTTGATTCTATCAAAAACAACAGGAAGAAAAGCTTTTCTTACGACACCAAAG
131 TTAAAAGACAAACTTTGATTCTATCAAAAACAACAGGAAGAAAAGCTTTTCTCACAAAACCAAAG
* * * *
30005 CAGCATTGTCGTGTATCCTAATGAAGGTAATATATTTTGGCTTCCCTATCTTGAAAAGAATGGAG
196 CAGCAATGTCATGTATCCTAATGAAGGTAATATATTTCGGCTTCCCAATCTTGAAAAGAATGGAG
* * * * * * *
30070 ATGGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
261 ATGGTAATGAAAATCGATGCTTATCGTATTCAAGGGATGAACTTTGATTTTAAGCAAAATAGGAC
* * *
30135 AAAGAAAAGATTTCCATGCAAAAGAAAAACATCAATGTCATTTATCCTAATGAGGAGAATGTGTT
326 AAAAAAAAGAATTCCATGCAAAAGAAAAACATCAATGTCATTTATCCTAAAGAGGAGAATGTGTT
* *
30200 TATTATGCCTTATCACAAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTCTTGG
391 TATTATGCCTTATCACAAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTCTAGG
*
30265 CACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTGTGCTGCAAAACAAAGCATCAATA
456 CACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTGTGCTGCAAAACAAACCATCAATA
* *
30330 TCATGTATCCTAACGAGAAGACTATGTTTATGGTGCCCAATCTTGAAAAGAATGTGTCTTATTTA
521 TCATGTATCCTAACGAGAAGACTATGTCTATGGTGCCCAATCCTGAAAAGAATGTGTCTTATTTA
30395 AGAGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
586 AGAGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
30460 CATTGTTTGTCAG
651 CATTGTTTGTCAG
** * *
30473 AATTGGTGAGAAGAAAGCCTTTGTCGTGAAACCAAAGCATCAATATCGTGTATTCTAATGAGAAG
1 AATTGGTGAGAAGAAAGCCTTTGTCGCAAAACCAAACCATCAATATCGTGTATCCTAATGAGAAG
* *
30538 ACTATGTTTATGGTGCCTAATCCTAAAAACAATGGGGATTAGTGTG-GCTATTCATGTTTGTCTT
66 ACTATGTCTATGGTGCCTAATCCT-AAAACAATGGGGATTAGTGTGAG-TATCCATGTTTGTCTT
* * * *
30602 GTTTAAAAGAGAAACTTTGATTCTAT-AAAAA-AACGACGAGAAGGAAAGCTTTTCTCGCAAAAC
129 ATTTAAAAGACAAACTTTGATTCTATCAAAAACAAC-A-G-GAAGAAAAGCTTTTCTCACAAAAC
* * * *
30665 TAAAGCATCAATGTCATGTATTCTAATGAAGGTAATATGTTTCGGCTTCCCAATCTTGAAAAGAA
191 CAAAGCAGCAATGTCATGTATCCTAATGAAGGTAATATATTTCGGCTTCCCAATCTTGAAAAGAA
* * *
30730 TGGAGACT-GTAATGAAAATTGATGCTTATCGTATTCAGGGGATGAACTTTGATTTTATGCAAAA
256 TGGAGA-TGGTAATGAAAATCGATGCTTATCGTATTCAAGGGATGAACTTTGATTTTAAGCAAAA
* * *
30794 TATGACAAAAAAAAGAATTCCATGCAAAAGGAAATCATCAATGTCATTTATCCTAAAGAGGAGAA
320 TAGGACAAAAAAAAGAATTCCATGCAAAAGAAAAACATCAATGTCATTTATCCTAAAGAGGAGAA
*
30859 TGTGTTTA-TAGTGCCTTATCAC-AAAAAGAATGAAGATCATTACTAGAATCTATGTTTATCTCA
385 TGTGTTTATTA-TGCCTTATCACAAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATCTCA
* *
30922 TT-TGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAA
449 TTCT-AGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTGTGCTGCAAAA-CAAA
* * *
30986 CCATCAATATCGTGTATCCTAATGAGAAGACTATGTCTATGGTGCCTAATCCTGAAA
512 CCATCAATATCATGTATCCTAACGAGAAGACTATGTCTATGGTGCCCAATCCTGAAA
31043 GATTGGTGAT
Statistics
Matches: 502, Mismatches: 59, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
662 3 0.01
663 89 0.18
664 148 0.29
665 261 0.52
666 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (663 bp):
AATTGGTGAGAAGAAAGCCTTTGTCGCAAAACCAAACCATCAATATCGTGTATCCTAATGAGAAG
ACTATGTCTATGGTGCCTAATCCTAAAACAATGGGGATTAGTGTGAGTATCCATGTTTGTCTTAT
TTAAAAGACAAACTTTGATTCTATCAAAAACAACAGGAAGAAAAGCTTTTCTCACAAAACCAAAG
CAGCAATGTCATGTATCCTAATGAAGGTAATATATTTCGGCTTCCCAATCTTGAAAAGAATGGAG
ATGGTAATGAAAATCGATGCTTATCGTATTCAAGGGATGAACTTTGATTTTAAGCAAAATAGGAC
AAAAAAAAGAATTCCATGCAAAAGAAAAACATCAATGTCATTTATCCTAAAGAGGAGAATGTGTT
TATTATGCCTTATCACAAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTCTAGG
CACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTGTGCTGCAAAACAAACCATCAATA
TCATGTATCCTAACGAGAAGACTATGTCTATGGTGCCCAATCCTGAAAAGAATGTGTCTTATTTA
AGAGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
CATTGTTTGTCAG
Found at i:31991 original size:158 final size:157
Alignment explanation
Indices: 30829--31994 Score: 528
Period size: 158 Copynumber: 7.4 Consensus size: 157
30819 AAAAGGAAAT
* * * * * * * * *
30829 CATCAATGTCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAAGAATGAA
1 CATCAATGTCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTAGAAAGAATG-T
* * * * * *
30893 GATCATTACTAGAATCTATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTG
64 GATCATTAATAGAATCCATGTTTGTCTTATTTAAGGCACGAACTTTGACTTTACAACAATTGGTG
* * *
30958 GGAAGAAAGCCTTTGTTGCAAAACCAAAC
129 GGAAGAAAACCTTTATTGCAAAACCAAAG
* * * *
30987 CATCAATATCGTGTATCCTAATGAGAAGACTATGTCTATGGTGCCTAATCCT-GAAAGATTGGTG
1 CATCAATGTCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAGAAT-GTG
* * * * * * * * *
31051 ATTAGTT--TGAGTATCCATGTTTTTCTTATTTAAGGGACAAACTTTGA-TTCTATAAAAAATGA
65 ATCA-TTAAT-AGAATCCATGTTTGTCTTATTTAAGGCACGAACTTTGACTT-TACAACAATTGG
** * * * * *
31113 CAGGAAGAAAAGCTTTTCTTACGACACCAAAG
127 TGGGAAGAAAA-CCTTTATTGCAAAACCAAAG
* * * * * *
31145 CATCATTGTCGTGTATCCTAATGAAGGTAATA-TAT-TTTA-GCTTCCCT-ATCTTA-AAAGAAT
1 CATCAATGTCATGTATCCTAATG-A-G-AAGACTATGTTTATG-GTGCCTAATCCTAGAAAGAAT
* * * * * * *
31205 GTAGA-CGGTT-ATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAA
62 GT-GATC-ATTAAT-AGAATCCATGTTTGTCTTATTTAAGGCACGAACTTTGACTTTACA--ACA
* ** ** * *
31267 ATAGG-GCAAAGAAAAGATTTCCATATG-AAAA-AAAAT
122 ATTGGTGGGAAGAAAACCTTT--AT-TGCAAAACCAAAG
* * * * * * *
31303 CATCAATGCCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTAT-C-AGAAAATGAATGA
1 CATCAATGTCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAG-AAA-GAATG-
* * * * * * *
31366 AGATCATTACTAGAATCCACGTTTATCTTATTTGAGGCACGAACTTAGACTTTGCAACAATTGGT
63 TGATCATTAATAGAATCCATGTTTGTCTTATTTAAGGCACGAACTTTGACTTTACAACAATTGGT
* *
31431 GGGAAGAAAGCCTTTGTTGCAAAACCAAAG
128 GGGAAGAAAACCTTTATTGCAAAACCAAAG
* *
31461 CATCAA--TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGG
1 CATCAATGTCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAG-AAAGAATGTG
* * * * * * * * **
31523 ATTAAT-GTGAGTATTCATGTTTGTGTTATTTAAGAG-ACAAACTTT-AATTCTATCAA-AAACG
65 ATCATTAAT-AGAATCCATGTTTGTCTTATTTAAG-GCACGAACTTTGACTT-TA-CAACAATTG
* * * * *
31584 ATGGGAAGAAAGGCTTTTCTTGCAACACCAAAG
126 GTGGGAAGAAA-ACCTTTATTGCAAAACCAAAG
* * * * * * * * * *
31617 CATCAATGTCGTGTATCCTAA--CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGGAAAAAATG-
1 CATCAATGTCATGTATCCTAATGAGAAGACTATGT-TTATGG-TGCCTAATCCTAGAAAGAATGT
** * * * * * * * * * *
31679 GA-CACTGTTAGGAGAATCGAAGCTTGTCTTATTTATGGGATGAACTTTCATTTTAAGAATAATT
64 GATCA---TTAATAGAATCCATGTTTGTCTTATTTAAGGCACGAACTTTGACTTT-ACAACAATT
* * ** * ** *
31743 -G-GGCAAAAAAAGATTTCCA-TGCCAAAGAAAAA
125 GGTGGGAAGAAAACCTTT--ATTGCAAAACCAAAG
* * * * * * * *
31775 CTTCAATGTCAAT-TATCCTAATGTGGAGAATGTGTTTATAGTGCCTTATCAC-AAAAAGAATGA
1 CATCAATGTC-ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTAGAAAGAATG-
* * * *
31838 TGATCAATAATAGAATCCATATTTGTCTCATTTGAGGCACGAACTTTGACTTTACAACAATTGGT
63 TGATCATTAATAGAATCCATGTTTGTCTTATTTAAGGCACGAACTTTGACTTTACAACAATTGGT
31903 GGGAAGAAAACCTTTATTGCAAAACCAAAG
128 GGGAAGAAAACCTTTATTGCAAAACCAAAG
* *
31933 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAGAATG
1 CATCAATGTCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAGAATG
31995 GGGATTACGA
Statistics
Matches: 728, Mismatches: 212, Indels: 136
0.68 0.20 0.13
Matches are distributed among these distances:
154 4 0.01
155 47 0.06
156 85 0.12
157 106 0.15
158 342 0.47
159 116 0.16
160 23 0.03
161 5 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (157 bp):
CATCAATGTCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAGAATGTGA
TCATTAATAGAATCCATGTTTGTCTTATTTAAGGCACGAACTTTGACTTTACAACAATTGGTGGG
AAGAAAACCTTTATTGCAAAACCAAAG
Found at i:32443 original size:476 final size:473
Alignment explanation
Indices: 30473--41729 Score: 6166
Period size: 475 Copynumber: 23.4 Consensus size: 473
30463 TGTTTGTCAG
* * ** *
30473 AATTGGTGAGAAGAAAGCCTTTGTCGTGAAACCAAAGCATCAATATCGTGTATTCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* *
30538 ACTATGTTTATGGTGCCTAATCCTAAAAACAATGGGGATTAGTGTG-GCTATTCATGTTTGTCTT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAG-TATTCATGTTTGTCTT
* * * * * * * * *
30602 GTTTAAAAGAGAAACTTTGATTCTATAAAAAAACGACGAGAAGGAAAGCTTTTCTCGCAAAACTA
130 ATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGACG-GAAGAAAAGCTTTTCTTGCGACACCA
* * *
30667 AAGCATCAATGTCATGTATTCTAATGAAGGTAATATGTTTCGGCTTCCCAATCTTGAAAAGAATG
193 AAGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATG
* * * * * * * * *
30732 GAGACTGTAATGAAAATTGATGCTTATCGTATTCAGGGGATGAACTTTGATTTTATGCAAAATAT
257 GAGACTGT-ATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAAT-T
* * * * *
30797 -GACAAAAAAAAGAATTCCATGCAAAAGGAAATCATCAATGTCATTTATCCTAAAG-AGGAGAAT
320 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCA-GAGAAT
* * *
30860 GTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTATCTCATTT
384 GTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTT
30925 GAGGCACGAACTTAGACTTTACAAC
449 GAGGCACGAACTTAGACTTTACAAC
*
30950 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAACCATCAATATCGTGTATCCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * * * * *
31015 ACTATGTCTATGGTGCCTAATCCTG-AAAGATTGGTGATTAGTTTGAGTATCCATGTTTTTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* * * *
31079 TTTAAGGGACAAACTTTGATTCTATAAAAAATGACAGGAAGAAAAGCTTTTCTTACGACACCAAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * * *
31144 GCATCATTGTCGTGTATCCTAATGAAGGTAATATATTTTAGCTTCCCTATCTT-AAAAGAATGTA
195 GCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGGA
* * * * *
31208 GACGGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
259 GACTG-TATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGGG
*
31273 CAAAGAAAAGATTTCCATATG-AAAA-AAAATCATCAATGCCATTTATCCTAATG-AGGAGAATG
323 CAAAGAAAAGATTTCC--ATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCA-GAGAATG
* * ** * *
31335 TGTTTATAGTGCCTTATCAGAAAATGAATGAAGATCATTACTAGAATCCACGTTTATCTTATTTG
385 TGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTG
*
31400 AGGCACGAACTTAGACTTTGCAAC
450 AGGCACGAACTTAGACTTTACAAC
31424 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATC-A-ATCGTGTATCCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* *
31487 ACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAATGTGAGTATTCATGTTTGTGTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* * * *
31551 TTTAAGAGACAAACTTTAATTCTATCAAAAACGATGGGAAGAAAGGCTTTTCTTGCAACACCAAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAACGA-CGGAAGAAAAGCTTTTCTTGCGACACCAAA
* * *
31616 GCATCAATGTCGTGTATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGGAAAAAATGGA
195 GCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTT-GAAAAAATGGA
* * * * * *
31681 CACTGTTAGGAGAATCGAAGCTTGTCTTATTTATGGGATGAACTTTCATTTTAAGAATAATTGGG
259 GACTG-TATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGGG
* * * * **
31746 CAAA-AAAAGATTTCCATGCCAAAGAAAAACTTCAATGTCAATTATCCTAATGTGGAGAATGTGT
323 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAATGTGT
* * *
31810 TTATAGTGCCTTATCACAAAAAGAATGATGATCAATAATAGAATCCATATTTGTCTCATTTGAGG
388 TTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGG
*
31875 CACGAACTTTGACTTTACAAC
453 CACGAACTTAGACTTTACAAC
* * * *
31896 AATTGGTGGGAAGAAAACCTTTATTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
*
31961 ACTATGTTTATGGTGCCTAATCCT-AGAAAGAATGGGGATTACGATG-G-GCATTCATGTCTT-T
66 ACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTA-G-TGTGAGTATTCATGT-TTGT
* * ** * *
32022 CTTTTTTAAAAGTTAACCTTTGATTCTATCAAAAAC-AGCAGGAAGAAAAGCTTCTCTTGCGACA
127 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGA-C-GGAAGAAAAGCTTTTCTTGCGACA
* * *
32086 CCAAACCATCAATGTCATGTATTCTAATGAAGGCAATATGTTTTGGCTTCTCAATCTTGGAAAAA
190 CCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTT-GAAAAA
* * * * *
32151 ATGGAGACTTGTAGGAGAATCGATGCTTGTCTTATTCAAAGGATGAACTTTGATTTTATGGTTAA
254 ATGGAGAC-TGTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAA
* ** * * *
32216 TTGGGCAAAGAAAAGATTTTCATATAAAAGAAAATCATCAACGTCATTTATCCTAAAGTAGAGAA
318 TTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAA
* * * *
32281 TGCGTTTGTAGTGCCCTT-TCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTCAT
383 TGTGTTTATAGTG-CCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCAT
* * *
32345 TTGAGGCATGAATTTAGACTTTACAAT
447 TTGAGGCACGAACTTAGACTTTACAAC
* * * *
32372 AATTGGTGAGAAGAAAGCCTTTGTTGCAAAACCAAAGTATCAATATCGTGTATCCTAATAAGAAA
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * * *
32437 ACTATGTTTATGATGTCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCAAGTTTGTCTTT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* * *
32502 TTTAAGAGACAAACTTTGATTCTATAAAAAATGGTA-GGAAGAAAAGCTTTTCTTGCAACACCAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAA-CG-ACGGAAGAAAAGCTTTTCTTGCGACACCAA
* * * ** *
32566 AGCATCAATGTCGTGTATCCTAACGAAGGTAATATGTTTCAGCTTCCCAATATTGAAAAGAATGG
194 AGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGG
* * * * * ** * ***
32631 AGACTGTAATGAAAATCGATGCTTATCGTATTCAAGGGATAAACTTTGATTTTAAAAAAAACACG
258 AGACTGT-ATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
* * * * * *
32696 GTAAAGAAAAGATTTCCAGGCAAAAGAAAATCTTCAACGTGAATTATCCTCTAATG-AGAAGAAT
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTAT-C-CTAATGCAG-AGAAT
* * *
32760 GTGTTTATAGTTCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTT
384 GTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTT
*
32825 GAGGCACGAACTTAGACTTTACCAC
449 GAGGCACGAACTTAGACTTTACAAC
* ** *
32850 AATTGGTGAGAAGAAAGCCTTTGTCACGAAACCAAAGCATCAAT-TCGTGTATCCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* *
32914 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTG-GTTATTCATGTTTGTGTT
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAG-TATTCATGTTTGTCTT
* * *
32978 GTTTAAAAGACAAACTTTGATTCTATCAAAAACGACGAGAAGAAAAGCTTTTCTTGCGACACTAA
130 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGACG-GAAGAAAAGCTTTTCTTGCGACACCAA
* * * *
33043 AGCATCAATGTCATG-----TAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAATCATAG
194 AGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGG
* * * * *
33103 AGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTCATTTTAAGGAAAATAGG
258 AGACTG-TATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
* * * * * * *
33168 GGAAAGAAAAGATTTCTATGCAAAAGAAAATCATTAATATCTTTTATCCTACTGCGGAGAATGTG
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAATGTG
* * *
33233 TTTTTCA-TGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCCCATTTTA
387 TTTAT-AGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
*
33297 GGCACGAACTTAGACTTTGCAAC
451 GGCACGAACTTAGACTTTACAAC
* * * *
33320 AATTGGTGGGAAGAAAGCCTTTGTT-CTGAAACCAAGGCATCAACATCGTGTATCCTACTGAGAA
1 AATTGGTGGGAAGAAAGCCTTTGTTGC-AAAACCAAAGCATCAATATCGTGTATCCTAATGAGAA
* * * *
33384 AACTATGTTTATGGTTCCTAATCCTGAAAAGAATGAGGATTAGTGTGAGTATTCATGTTTTTCTT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTT
* * * * * ** *
33449 CTTTAAGAGACCAATTTTGATTCTATAAAAAATGATAAGAAGAAAAGCTTTTCTTGAGACACCAA
130 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGA-CGGAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * *
33514 AGCATCAAGGTC--G--T-GT-AT----G-----TGTTTTGGCTTCCCAATCTTTAAATGAGTGA
194 AGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAA-AAATGG
*
33564 AGACTGTTATGAGAATCGATGCTTATCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
258 AGACTG-TATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
* * * * *
33629 GCAAAGAAAAGATTTCCATGCAAAACAAAAACACCAATGTCTTTTATCCTAATGAAGAGAATGTG
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAATGTG
* *
33694 TTTATAGTGCCTTATCATAAAAAGAATGATGATCATTACTAGAATCCATATTTGTCTCATTTGAG
387 TTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
* *
33759 TCACGAACTTAGAGTTTACAAC
452 GCACGAACTTAGACTTTACAAC
* * * *
33781 AATTGGTGGGAAGAAAGCCTCTGTTGCAAAACCAAAGCTTCAATAT-GATGTATCTTAACGAGAA
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAA
* * * * *
33845 AACTATGTTTCTGGTGCCTAACCCTGAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTGTCTC
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTT
* * * * * *
33910 ATTTAAGTGACAAAC-ATGATTCTATCAAAAACGACGAGAAGAAAATCATTTCTTGAGACCCCAA
130 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGACG-GAAGAAAAGCTTTTCTTGCGACACCAA
* * * *
33974 AGCATCAATGTCATGTATCCCAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAGAAGTGG
194 AGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAA-AAATGG
* * * * * *
34039 AGACTATTACGAGAATCTATGCTTCTCTTATTCAAAGGATGAACTTTCATTTTAAGGATAATTGT
258 AGACT-GTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
* * * *
34104 GCAAAGAAAAGATTTCCATGCAAAAGAAAAACATCAATGTCAATTATCCGAATGCGGAGAATGTG
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAATGTG
* * * *
34169 TTTATAGTGCCTTATCACAAAAAGAATGATGATCATTACTGGAATCCATATTTATCTCATATGAG
387 TTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
* *
34234 GCACGAAGTTAGACTTTGCAAC
452 GCACGAACTTAGACTTTACAAC
*** * * * * **
34256 AATTGGTGGGAAGAAAGCCTTTGTTTTGAAACTAAGGCAACAACATCGTGTATCCTACGGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * *
34321 ACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTTTCTTC
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* * * * * *
34386 TTTAAGAGACCAATTTTGATTCTATCAAAAACGATGAGAATAAATGCTTTTCTTGAGACACCAAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAACGACG-GAAGAAAAGCTTTTCTTGCGACACCAAA
** * *
34451 GCATCAATGTCGCGTATCCTAATGAACGCAATGTGTTTTGGCTTCCCAATCTTGAAAGGAGTAA-
195 GCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAA--A--AAT
* * * *
34515 AGATAAT-TATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATGATTG
256 GGAGACTGTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTG
* * * * *
34579 GGCAAACAAAAGATTTCCAAGCAAAAGAAAAACATCAATGTCAATTATCCTAATGCCGAGAATGT
321 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAATGT
*
34644 GTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTAA
386 GTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
34709 GGCACGAACTTAGACTTTACAAC
451 GGCACGAACTTAGACTTTACAAC
* * ** * *
34732 AATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATTTATATCATGTATCCTAAAGAGGAA
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGA-GAA
* * * * * * *** * * * * *
34797 -AATGTGTTTGTAGTGCCAAATCAC-AAAAAGAATGAAAATCATTAGT-AGAATCCATATTTGTC
65 GACTATGTTTATGGTGCCTAATC-CTGAAAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTC
* * * * ** ** * * * *
34859 TCATTTGAG-GTACGAACTTAGACTT-TA-CAACAATTGGTGGGAAG-AAAGCCTTTGTTGCAAA
128 TTATTTAAGAG-ACAAACTTTGA-TTCTATCAA-AA-ACGACGGAAGAAAAGCTTTTCTTGCGAC
* ** * * * * * * * *
34920 ACCAAAGCTTCAAAATCATGTATCCTAATGAGAAGACTTATAT-ATATGG-TGCCTAACCCTGAA
189 ACCAAAGCATCAATGTCATGTATCCTAAT--GAAGGC-AATATGTTTTGGCTTCCCAATCTTGAA
* * * * * ** ** * ** *
34983 AGGAATGGAGATATTAGTGTGAGCATTC-ATG-TTAGTCTTATTTAAAAGACAAACCTGGATTCT
251 A-AAATGGAG--ACT-GTATGAG-AATCGATGCTT-GTCTTATTCAAGGGATGAACTTTCATTTT
** * ** * * ** * * * ***
35046 -ATCAAAAACGGCGAGAAAG-AAAGCTTTTCTTTTG-ACGAAGGAAAT-GTGTTTTGGCTTCCCA
310 AAGGATAATTGG-G-CAAAGAAAAG-ATTTC-CATGCA-AAAGAAAATCAT-CAAT-G--T--C-
**** * *** * * **** * *
35107 ATCTTGAAAAAAATG--GAGACTGTTAGGAGAATCGATG-CTTGTCTTGTTCAAGGGATGAACTT
363 AT-TT-ATCCTAATGCAGAGAATG-T--GTTTATAG-TGCCTTATC--ACAAAAAGAATGAA---
* *** * * ** ** * *
35169 TGAT-TTTAACGGTAGTTGGGCAAAGAAAAGATT-TC-CA--TGCAAACGAAAAACATCA-A-TG
417 -GATCATT-AC--TA-----G-AATCCATA-TTTGTCTCATTTG-AGGC-ACGAAC-TTAGACTT
*
35227 T-CAAT
468 TACAAC
* ** * * ** * ** * * *
35232 TATCCTAAT-GCAGAGAATGTGTTTATAGTGCCTTATCACTAAAAGAATGATGATCATTAC-TAG
1 AAT--TGGTGGGA-AGAAAGCCTTTGT--TG-C--AAAAC-CAAAGCATCA--AT-A-T-CGT-G
* *** * * * * * * *
35295 AATCC--AT-ATTTGTCTCAT-TTGA-GGCACGACCTTAGA-CTTTACAACAATTGGTGGGA--A
51 TATCCTAATGAGAAGACT-ATGTTTATGG--TG-CC-TA-ATCCTGAAAAGAA-T-G-GGGATTA
*** * * * * * * **
35352 G-AACAATA-TCATG--TATCCTA-ATGAGAAGACTATGTTT-ATGGTGCCTAATCCTGCAAAGA
107 GTGTGAGTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGAT--T--CT-A---T-CAAA-A
* * * *** * ** * ** * * *
35411 ATG-GGGATTTGTGTGAG-TATTCATGTTTGTCTTATTTAAGAG-AT-AGACTTTGATTCTATCA
161 ACGACGGA--AG-AAAAGCTTTTC-T-TGCGAC--A-CCAA-AGCATCA-A-TGTCA-TGTATC-
** * ** * * * * * * * ** ** ***
35472 GAAACAGGGGGGAAGAAAAGCTTTT--CTTGCGACATCATAGCATGAATGTCG--TGTATCCTAA
213 -CTA-ATGAAGGCA-ATATG-TTTTGGCTTCCCA-ATC-TTGAAAAAATGGAGACTGTATGAGAA
* * * ** * * * **** * ** * **
35533 T-GAAGGCCATGTGTT-TT--A-GCTTCCAAATCTTGAGCAGAATGGA-AACTGTTCAGAGAATC
272 TCG-ATG-CTTGTCTTATTCAAGGGAT-GAACT-TTCATTTTAA-GGATAATTGGGCAAAGAAAA
* ** *** *** * * * *** * * *
35592 GA--TGCATGTCTTATTCAAGGGATGAACTTTGATCTTAAGGATAACCGGGCAAAGAAAAGAT-T
332 GATTTCCATG-CAAAAGAAAATCATCAA-TGTCAT-TT-ATCCTAA---TGCAGAG-AATG-TGT
* * ** * * * * *
35654 TT-CA-TG-C--A--AAAGAAAATCATCAATG-TCATTTATCCT--AATGCGGAGAATGTGTTTC
388 TTATAGTGCCTTATCACA-AAAAGAATGAA-GATCA-TTA--CTAGAAT-C-CA-TATTTGTCTC
* ** * ** * *
35709 TAGTGCCTT-A-TCAC-AA-AAAGAATGAAGATC
445 -A-T---TTGAGGCACGAACTTAGACTTTACAAC
** * ** * *** ** * * *
35739 -ATTACT-AGAATCCATG--TTTGTCT-C-ATTTC-GGGCA-CGA-A-C-T-TA---GAATTTA-
1 AATTGGTGGGAA-GAAAGCCTTTGT-TGCAAAACCAAAGCATCAATATCGTGTATCCTAA-TGAG
* ** * ** * ** * * * * * * *
35788 AA-ACAATTGGTGGGAAGAAAGCCT-TTGTTGCAAAACCAAT--GCATCAATATCGTGTATCCTA
63 AAGACTA-T-GT-TTATG-GTGCCTAATCCTG-AAAA-GAATGGGGATTAGTGT-GAGTAT--TC
*** * * * * * * * * * ***
35849 ATGAGAAGACTATGTTTATGGTGCCCAA-TCTTGA----A--AAGAATG-GGGATTAGTGTGAG-
119 ATG-TTTGTCT-TATTTA-AGAGACAAACT-TTGATTCTATCAAAAACGACGGA--AG-AAAAGC
* ** * ** * * * ** * * *
35905 TATTCATGTTTGTCTTATTTAAGAG-A-CAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAGC
177 TTTTC-T-TGCGAC--A-CCAA-AGCATC-AA-TGTCA-TGTATC-CTAAT-GAAGGCA-ATA--
* * * * * * *** * ** * *
35968 TTTTCTTACGGC-ACCAAAGCATCAACGTCATGTATCCT-AATGAAGGAAAT-G-TGCATTGGCT
228 TGTT-TT--GGCTTCCCAATCTTGAA-AAAATGGAGACTGTATG-A-G-AATCGATGC-TTGTCT
* * * * * * *
36029 TCCCAATCTTAATAAGAATGGAGACGGTT-A---CAA-G--AA-TGGAGCAGAATGGAAA-CTGT
285 T----A--TTCA-AGGGAT-GA-AC-TTTCATTTTAAGGATAATTGG-GCA-AA-GAAAAGAT-T
* * *
36085 T-CA-G----AG--AATCGATGC-ATGTC-TTT-TTC-AA-G-GGATGAACTTTGATTT-TAAG-
336 TCCATGCAAAAGAAAATC-AT-CAATGTCATTTATCCTAATGCAGA-GAA-TGTG-TTTAT-AGT
*** *** * * *
36134 G-AAAAT-AGGGTAAAGAA--AAGATTTCCA-TGCGAAAGAAAATCATCAATGTCATTTATC-C-
395 GCCTTATCA-CAAAAAGAATGAAGA--T-CATTAC--TAG--AATC--C-A--T-ATTTGTCTCA
** * * *
36192 TAAAGAGG-A-GAATGTGTTTATAGTGCCTTATCACAAAA
446 T-TTGAGGCACGAA-----CT-TA--GACTT-T-AC-AAC
* *** * ** * * * *
36230 AGAATGAAGATCATTACTAG-AATCCATGTTTGTCT-CATTA-C-AGGCATGAACT-TAGACTTT
1 A-ATTG--G-T-GGGA--AGAAAGCC---TTTGT-TGCAAAACCAAAGCATCAA-TATCG--TGT
* * * * * * * **** *
36290 A-CAAC-AATTGGTGGGAAGA--AAGCCTT-TGTTG-CAAAACC---AAAGCATCAATATCA-TG
52 ATC--CTAA----TGAGAAGACTATG-TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTG
* * * ** * * * * * * * * *
36345 T-A-TCCTAACAAG-AAGACTATGTTTATGGTGCCCAA-TCTTGA----A--AATAATG-GGGAT
110 TGAGT-AT-TCATGTTTGTCT-TATTTA-AGAGACAAACT-TTGATTCTATCAAAAACGACGGA-
*** * ** * ** * * * ** *
36399 TAGTGTGAG-TATTCATGTTTGTCTTATTTAAGAG-A-CAAACTTTGATTCTATCAAAAATGGCA
169 -AG-AAAAGCTTTTC-T-TGCGAC--A-CCAA-AGCATC-AA-TGTCA-TGTATC-CTAAT-GAA
* * * * * ** ** * * *** *
36461 GGAAGAAAAGCTTTT--CTT-GCGA-CTCCAAAGCAT-CATTGTCGTGTATCCTAA-CGTAGGCA
221 GGCA-ATATG-TTTTGGCTTCCCAATCTTGAAAAAATGGA--GAC-TGTATGAGAATCG-ATGC-
* * * ** * * * * **
36520 ATATGTTTTCACTTCCCAATCTTGAAAAGAATAGAGACTGTAACGAAAATCAATGCTTATCATAT
279 -T-TGTCTT-A-TT--CAA----G----GGAT-GA-ACT-T-TC--ATTTTAAGGATAAT--TGG
* * * * *** * * * ** *
36585 TCAAGGATAAA-CTTT-GATTTTAAGGAAAATACGGT-AAAGAAAATATT-TCC--ATGCAAAAG
322 GCAAAGA-AAAGATTTCCATGCAAAAGAAAAT-C-ATCAATG-TCAT-TTATCCTAATGC-AGAG
** ** * * * * * *
36644 AAAATCATCA-A-TGTCAATTATC-CTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAAA
381 AATGTGTTTATAGTG-C-CTTATCAC-AA--A-AAGAA--TG---A-AGATC---ATTAC---TA
** *** * ** **
36706 GAATGAAGATCATTACTAGAATC-CATGTTTGTCTCATTTGAGGTGCGAAC-TTA-AAC
428 GAAT--CCAT-ATT--T-G--TCTCA--TTTGAGGCA--CGAACTTAG-ACTTTACAAC
* ***** **** * *** * * * * * *
36762 -TTTGCCACAATTAGTGAGAAGAAAGCTTTTG--TCGCGAAACCA--AAGCATCAATATCATGTA
1 AATTGGTGGGA--A--GA-AAG-CCTTTGTTGCAAAACCAAAGCATCAA-TATC-GTGT-AT-C-
* * *
36822 TCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATT
55 --CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATT
* ** **
36887 CATGTTTGTCTTGTTTAAGAGACTGACTTTGATTCTATCAAAAACGGTGGGAAGAAAAGCTTTTC
118 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GACGGAAGAAAAGCTTTTC
* * * * * ** * * * *
36952 TTGCGACACTAAAGCGTCAATTTCGTGTATTCTAACAAAGGGAATGTGTTTTGGTTTCCCAATCC
182 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCT
* * * *
37017 TGAAAAGAATGGGGACTGTTAGGGAGAATCGAGGCTTGTCCTATTCAAGGGATGAACTTTCATTT
247 TGAAAA-AATGGAGACTG-TA-TGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTT
* * * * * * *
37082 TAAGAAAAATAGGGGAAAGAAAAGATTTCCATGAAAAAGAAAAACATCAATGTCTTTTATCCTAA
309 TAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAA
* * * * ** * *
37147 TG-AGAAAAATGTGTTTATAGGGCGTTATCACAAAAAGAACGACCATCATTTCTAGAATCCATGT
374 TGCAG-AGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATAT
* * * *
37211 TTGTCTCATTTGAGGCACTAACTTAGGCTTTGCAAT
438 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAC
* * *
37247 AATTGGTGGGAAGAAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGA
1 AATTGGTGGGAAGAAAGCC-TT-TGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGA
*
37312 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCT
64 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCT
* * * *
37377 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAG-AAAGCTTTTCTTACGGCACCA
129 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCA
* * * **
37441 AAGCATCAACGTCATGTATCCTAATGAAGGAAATGTGCATTGGCTTCCCAATCTT-AATAAGAAT
193 AAGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAA-AA-AAT
* *
37505 GGAGACGGCTACAAGAATGGAGCAGAATGGAAACTGTTCAGAGAATCGATGCATGTCTTTTTCAA
256 -G-GA--G--AC-----T------G--T----A----T--GAGAATCGATGCTTGTCTTATTCAA
* * * * *
37570 GGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCGAAAGAAAATCATC
292 GGGATGAACTTTCATTTTAAGGATAATTGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
*
37635 AATGTCATTTATCCTAAAG-AGGAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATC
357 AATGTCATTTATCCTAATGCA-GAGAATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATC
* ** *
37699 ATTACTAGAATCCATGTTTGTCTCATTACAGGCATGAACTTAGACTTTACAAC
421 ATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAC
* **
37752 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTATCCTAACAAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * * *
37817 ACTATGTTTATGGTGCCCAATCTTGAAAATAATGGGGATTAGTGTGAGTATTCATGTTTGCCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* * *
37882 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAAGCTTTTCTTGCGACTCCAAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * ** *
37947 GCATCATTGTCGTGTATCCTAACGTAGGCAATATGTTTTCACTTCCCAATCTTGAAAAGAATAGA
195 GCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGGA
* * * * * * * * **
38012 GACTGTAACGAAAATCAATGCTTATCATATTCAA-GGATAAACTTTGATTTTAAGGAAAATACGG
259 GACTGT-ATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGGG
* * *
38076 TAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATGTCAATTATCCTAATG-AGGAGAATGTG
323 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCA-GAGAATGTG
* * *
38140 TTTATAGTTCTTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
387 TTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
** * * *
38205 GTGCGAACTTAAACTTTGCCAC
452 GCACGAACTTAGACTTTACAAC
* * * * * *
38227 AATTAGTGAGAAGAAAGCTTTTGTCGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * * *
38292 ACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATTCATGTTTGTCTTG
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
** ** *
38357 TTTAAGAGACTGACTTTGATTCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTGCGACACTAAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAAC-GACGGAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * ** * * * * *
38422 GCGTCAATTTCGTGTATTCTAACAAAGGGAATGTGTTTTGGTTTCCCAATCCTGAAAAGAATGGG
195 GCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGGA
* * * * * * *
38487 GACTGTTAGGGAGAATTGAGGCTTGTCCTATTCAAGGGATGAACTTTCATTTTAAGAAAAATAGG
259 GACTG-TA-TGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
* * * * *
38552 GGAAAGAAAAGATTTCCATGAAAAAGAAAAACATCAATGTCTTTTATCCTAATG-AGAAAAATGT
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAG-AGAATGT
* * * ** * *
38616 GTTTATAGGGCGTTATCACAAAAAGAACGACCATCATTTCTAGAATCCATGTTTGTCTCATTTGA
386 GTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
* * * *
38681 GGCACTAACTTAGGCTTTGCAAT
451 GGCACGAACTTAGACTTTACAAC
* * *
38704 AATTGGTGGGAAGAAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGA
1 AATTGGTGGGAAGAAAGCC-TT-TGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGA
*
38769 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCT
64 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCT
* * *
38834 TATTTAAGCGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCAACACCA
129 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCA
* * * * *
38899 AAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTCAAGAGAATG
193 AAGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAA-AAAATG
* * * * * * *
38964 GGGACTGTTAGGAGAATTGATGTTTGTCTTATTGAAGGGATGAACTTTCATTTTAAGGAAAATAG
257 GAGACTG-TATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTG
* * * * * * * * *
39029 GGGAAAGAAAAGATTTCCATGCAAAAGAAAAACTTTAGTGTCTTTTATCCTATTG-AGGAGATTT
321 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCA-GAGAATG
* * * *
39093 TGTTTATAGTGTCTTATCACAAAAAGATTGGAGATCATTACTACAATCCATATTTGTCTCATTTG
385 TGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTG
* *
39158 AGGCACGGACTTAGACTTTACAAT
450 AGGCACGAACTTAGACTTTACAAC
* ** * * * * *
39182 AATTGGTGGGAAGAAAAG-CTTTGTTGCGAGGCCGAAGCTTCAATATCATGTATCCTTATAAGAA
1 AATTGGTGGGAAG-AAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAA
* *
39246 GACTATGTTTATGGTGCTTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTT
* * *
39311 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAAGCTTTTCTTGCGACTCCAA
130 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCAA
* * * * **
39376 AGCATCATTGTCGTGTATCCTAACGTAGGCAATATGTTTTCACTTCCCAATCTTGAAAAGAATGG
194 AGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGG
* * * ** * * * **
39441 AGACTGTAAGGAAAATCGATGCTTATCAAATTCAA-GGATAAACTTTGATTTTAAGGAAAATACG
258 AGACTGT-ATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
*
39505 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCAATTATCCTAATG-AGGAGAATGT
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCA-GAGAATGT
* *
39569 GTTTATAGTTCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
386 GTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
** * * *
39634 GGTGCGAACTTAAACTTTGCCAC
451 GGCACGAACTTAGACTTTACAAC
* * * * * *
39657 AATTAGTGAGAAGAAAGCTTTTGTCGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * * *
39722 ACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATTCATGTTTGTCTTG
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
** * * *
39787 TTTAAGAGACTGACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCAACACTAAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCAAA
* * * ** * * * * *
39852 GCGTCAATGTCGTGTATTCTAACAAAGGGAATGTGTTTTGGTTTCCCAATCCTGAAAAGAATGGG
195 GCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGGA
* * * * * *
39917 GACTGTTAGGGAGAATCGAGGCTTGTCCTATTCAAGGGATGAACTTTCATTTTAAGAAAAATAGG
259 GACTG-TA-TGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
* * * *
39982 GGAAAGAAAAGATTTCCATGCAAAAGAAAAACATCAATGTCTTTTATCCTAATG-AGAAAAATGT
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAG-AGAATGT
* * * * ** * *
40046 GTTTATAGGGCGTTATCACAAAAGGAACGACCATCATTTCTAGAATCCATGTTTGTCTCATTTGA
386 GTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
* *
40111 GGCACTAACTTAGACTTTGCAAC
451 GGCACGAACTTAGACTTTACAAC
* * *
40134 AATTGGTGGGAAGAAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGA
1 AATTGGTGGGAAGAAAGCC-TT-TGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGA
* *
40199 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTGTGAGTATTCATGTTTGTCT
64 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCT
* * * *
40264 TATTTAAGCGACAAACTTTGATTCTATAAAAAACGGCGGGAAGAAAAGCTTTTCTTGCAACACCA
129 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCA
* * * * *
40329 AAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTCAAGAGAATG
193 AAGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAA-AAAATG
* * * *
40394 GGGACTGTTAGGAGAATTGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGA-AATAG
257 GAGACTG-TATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTG
* * * * * * *
40458 GGGAAAGAAAAGATTTCCATGCAAAAGAAAAACTTCAATGTCTTTTATCCTATTG-AGGAGATTT
321 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCA-GAGAATG
* * * *
40522 TGTTTATAGTGTCTTATCACAAAAAGATTGGAGATCATTACTACAATCCATATTTGTCTCATTTG
385 TGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTG
* *
40587 AGGCACGGACTTAGACTTTACAAT
450 AGGCACGAACTTAGACTTTACAAC
* * ** * * * *
40611 AATTGGTGGGAAGAAAAG-CTTTGTTTCGAGGCCAAAGCTTCAATATCATGTATCCTTATAAGAA
1 AATTGGTGGGAAG-AAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAA
* * *
40675 GACTATGTTTACGGTGCTTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTT
65 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTT
* * *
40740 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAAGCTTTTCTTGCGACTCCAA
130 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGAC-GGAAGAAAAGCTTTTCTTGCGACACCAA
* * * * **
40805 AGCATCATTGTCGTGTATCCTAACGTAGGCAATATGTTTTCACTTCCCAATCTTGAAAAGAATGG
194 AGCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAA-AATGG
* * * * * * * **
40870 AGACTGTAACGAAAATCGATGCTTATCATATTCAA-GGATAAACTTTGATTTTAAGGAAAATACG
258 AGACTGT-ATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGG
* *
40934 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATGTCAATTATCCTAATG-AGGAGAATGT
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCA-GAGAATGT
* * * * *
40998 GTTTATAGAGCC-TATCACAAAAAGAATGACGATCATTTCTAGAATCCATGTTTGTTTCATTTGA
386 GTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
* **
41062 GGCACGAACTTAGACTTTATAGT
451 GGCACGAACTTAGACTTTACAAC
* * *
41085 AATTTGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTGTATCCTAACGAGAAG
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * * *
41150 ACAATGTTTATGGTGCCCAATCTTGAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* * *
41215 TTTAAGAGACAAACTTTAATTCTATCAAAAACGAGGGGATGAAAAGCTTTTCTTGCGACACCAAA
131 TTTAAGAGACAAACTTTGATTCTATCAAAAACGA-CGGAAGAAAAGCTTTTCTTGCGACACCAAA
* * ** **
41280 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAGGCATAAA
195 GCATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAA-AAATGGA
* * * * * *
41345 GACTATTATGAAAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATA-GAAAATAGG
259 GACT-GTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTA-AGGATAATTGG
* * * * *
41409 GCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCAGTATCATTTATCCTAATGCGGAGAATGTG
322 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAATGTG
* * * * * * *
41474 TTTATAGAGCC-TATCACTAAAAGAA-CAATGATCATTTCGAGAATCCATGTTTGTTTCATTTGA
387 TTTATAGTGCCTTATCACAAAAAGAATGAA-GATCATTACTAGAATCCATATTTGTCTCATTTGA
* **
41537 GGCATGAACTTAGACTTTACAGT
451 GGCACGAACTTAGACTTTACAAC
* * *
41560 AATTGGTGGGAAGAAAGCCTTTGTTG------CGAAGC--CAA-A----GCATCCTAATGAGAAA
1 AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * * *
41612 ACTATGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTCTTCTTGTTTGTCTTA
66 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
* * ** *
41677 -TTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGGAAGAAAAGCATTTCTT
131 TTTAAGAGACAAACTTTGATTCTATCAAAAA-CGACGGAAGAAAAGCTTTTCTT
41730 AAGACCCTAA
Statistics
Matches: 8509, Mismatches: 1674, Indels: 1210
0.75 0.15 0.11
Matches are distributed among these distances:
460 53 0.01
461 381 0.04
462 73 0.01
464 1 0.00
466 3 0.00
467 3 0.00
469 6 0.00
470 134 0.02
471 147 0.02
472 460 0.05
473 83 0.01
474 633 0.07
475 1943 0.23
476 1214 0.14
477 826 0.10
478 492 0.06
479 576 0.07
480 23 0.00
481 13 0.00
482 22 0.00
483 15 0.00
484 35 0.00
485 14 0.00
486 27 0.00
487 15 0.00
488 11 0.00
489 17 0.00
490 9 0.00
491 13 0.00
492 9 0.00
493 11 0.00
494 8 0.00
495 20 0.00
496 9 0.00
497 8 0.00
498 11 0.00
499 5 0.00
500 11 0.00
501 11 0.00
502 30 0.00
503 279 0.03
504 95 0.01
505 207 0.02
506 8 0.00
507 11 0.00
508 21 0.00
509 23 0.00
510 43 0.01
511 31 0.00
512 16 0.00
513 19 0.00
514 11 0.00
515 8 0.00
516 20 0.00
517 9 0.00
518 6 0.00
519 8 0.00
520 4 0.00
521 14 0.00
522 12 0.00
523 9 0.00
524 15 0.00
525 21 0.00
526 23 0.00
527 17 0.00
528 22 0.00
529 12 0.00
530 31 0.00
531 11 0.00
532 14 0.00
533 36 0.00
534 21 0.00
535 11 0.00
536 9 0.00
537 6 0.00
538 10 0.00
539 11 0.00
540 2 0.00
541 6 0.00
544 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (473 bp):
AATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTA
TTTAAGAGACAAACTTTGATTCTATCAAAAACGACGGAAGAAAAGCTTTTCTTGCGACACCAAAG
CATCAATGTCATGTATCCTAATGAAGGCAATATGTTTTGGCTTCCCAATCTTGAAAAAATGGAGA
CTGTATGAGAATCGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGGATAATTGGGCAA
AGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGCAGAGAATGTGTTTA
TAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCAC
GAACTTAGACTTTACAAC
Found at i:34831 original size:158 final size:158
Alignment explanation
Indices: 34639--34947 Score: 503
Period size: 158 Copynumber: 2.0 Consensus size: 158
34629 TAATGCCGAG
** *
34639 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
1 AATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTACTAGAATCCATATTTGTCTCA
* *
34704 TTTAAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAG
66 TTTAAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
* *
34769 CATT-TATATCATGTATCCTAAAGAGGAA
131 C-TTCAAAATCATGTATCCTAAAGAGGAA
* *
34797 AATGTGTTTGTAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATATTTGTCTCA
1 AATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTACTAGAATCCATATTTGTCTCA
* *
34862 TTTGAGGTACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
66 TTTAAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
34927 CTTCAAAATCATGTATCCTAA
131 CTTCAAAATCATGTATCCTAA
34948 TGAGAAGACT
Statistics
Matches: 139, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
157 2 0.01
158 137 0.99
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (158 bp):
AATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTACTAGAATCCATATTTGTCTCA
TTTAAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
CTTCAAAATCATGTATCCTAAAGAGGAA
Found at i:37013 original size:475 final size:475
Alignment explanation
Indices: 36091--41729 Score: 7243
Period size: 475 Copynumber: 11.8 Consensus size: 475
36081 CTGTTCAGAG
* * * *
36091 AATCGATGCATGTCTTTTTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* *
36156 TTCCATGCGAAAGAAAATCATCAATGTCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CTT
** *
36221 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTACAGGCATGAACTTAGA
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
36286 CTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTATCCT
195 CTTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCT
** * *
36351 AACAAGAAGACTATGTTTATGGTGCCCAATCTTGAAAATAATGGGGATTAGTGTGAGTATTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATG
* *
36416 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAAGCTTTTCTTGC
325 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGC
* * * * **
36481 GACTCCAAAGCATC-ATTGTCGTGTATCCTAACGTAGGCAATATGTTTTCACTTCCCAATCTTGA
390 GACACCAAAGCATCAATT-TCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTGA
* *
36545 AAAGAATAGAGACTGTAACGAA
454 AAAGAATGGAGACTGTAAGGAA
* * * * * *
36567 AATCAATGCTTATCATATTCAA-GGATAAACTTTGATTTTAAGGAAAATACGGTAAAGAAAATAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* *
36631 TTCCATGCAAAAGAAAATCATCAATGTCAATTATCCTAATGAGGAGAATGTGTTTATAGTTCTTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-TT
** *
36696 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAAA
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
36761 CTTTGCCACAATTAGTGAGAAGAAAGCTTTTGTCGCGAAACCAAAGCATCAATATCATGTATCCT
195 CTTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * * *
36826 AATGAGAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATG
* ** *
36891 TTTGTCTTGTTTAAGAGACTGACTTTGATTCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTGC
325 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGC
* * * * * *
36956 GACACTAAAGCGTCAATTTCGTGTATTCTAACAAAGGGAATGTGTTTTGGTTTCCCAATCCTGAA
390 GACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * *
37021 AAGAATGGGGACTGTTAGGGAG
455 AAGAATGGAGACTG-TAAGGAA
* * * *
37043 AATCGAGGCTTGTCCTATTCAAGGGATGAACTTTCATTTTAAGAAAAATAGGGGAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* * * * * *
37108 TTCCATGAAAAAGAAAAACATCAATGTCTTTTATCCTAATGAGAAAAATGTGTTTATAGGGCGTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-TT
* ** * * *
37173 ATCACAAAAAGAACGACCATCATTTCTAGAATCCATGTTTGTCTCATTTGAGGCACTAACTTAGG
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
37238 CTTTGCAATAATTGGTGGGAAGAAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATC
195 CTTTGCAACAATTGGTGGGAAGAAAG-CTTT-TGTTGCGAAACCAAAGCATCAATATCATGTATC
37303 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCA
258 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCA
* *
37368 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAG-AAAGCTTTTCTT
323 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTT
* * ** * * * **
37432 ACGGCACCAAAGCATCAACGTCATGTATCCTAATGAAGGAAATGTGCATTGGCTTCCCAATCTT-
388 GCGACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
37496 AATAAGAATGGAGACGGCTACAAGAATGGAGCAGAATGGAAACTGTTCAGA
453 AA-AAGAATGGAGA---CT----G--T-------AA--G-----G---A-A
* * * *
37547 GAATCGATGCATGTCTTTTTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGA
1 -AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGA
* *
37612 TTTCCATGCGAAAGAAAATCATCAATGTCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCT
65 TTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CT
** *
37677 TATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTACAGGCATGAACTTAG
129 TATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
37742 ACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTATCC
194 ACTTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCC
** * *
37807 TAACAAGAAGACTATGTTTATGGTGCCCAATCTTGAAAATAATGGGGATTAGTGTGAGTATTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCAT
* * *
37872 GTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAAGCTTTTCTTG
324 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTG
* * * * **
37937 CGACTCCAAAGCATC-ATTGTCGTGTATCCTAACGTAGGCAATATGTTTTCACTTCCCAATCTTG
389 CGACACCAAAGCATCAATT-TCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
* *
38001 AAAAGAATAGAGACTGTAACGAA
453 AAAAGAATGGAGACTGTAAGGAA
* * * * * *
38024 AATCAATGCTTATCATATTCAA-GGATAAACTTTGATTTTAAGGAAAATACGGTAAAGAAAATAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* *
38088 TTCCATGCAAAAGAAAATCATCAATGTCAATTATCCTAATGAGGAGAATGTGTTTATAGTTCTTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-TT
** *
38153 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAAA
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
38218 CTTTGCCACAATTAGTGAGAAGAAAGCTTTTGTCGCGAAACCAAAGCATCAATATCATGTATCCT
195 CTTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * * *
38283 AATGAGAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATG
* ** *
38348 TTTGTCTTGTTTAAGAGACTGACTTTGATTCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTGC
325 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGC
* * * * * *
38413 GACACTAAAGCGTCAATTTCGTGTATTCTAACAAAGGGAATGTGTTTTGGTTTCCCAATCCTGAA
390 GACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * *
38478 AAGAATGGGGACTGTTAGGGAG
455 AAGAATGGAGACTG-TAAGGAA
* * * * *
38500 AATTGAGGCTTGTCCTATTCAAGGGATGAACTTTCATTTTAAGAAAAATAGGGGAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* * * * * *
38565 TTCCATGAAAAAGAAAAACATCAATGTCTTTTATCCTAATGAGAAAAATGTGTTTATAGGGCGTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-TT
* ** * * *
38630 ATCACAAAAAGAACGACCATCATTTCTAGAATCCATGTTTGTCTCATTTGAGGCACTAACTTAGG
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
38695 CTTTGCAATAATTGGTGGGAAGAAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATC
195 CTTTGCAACAATTGGTGGGAAGAAAG-CTTT-TGTTGCGAAACCAAAGCATCAATATCATGTATC
38760 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCA
258 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCA
*
38825 TGTTTGTCTTATTTAAGCGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTT
323 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTT
* * * *
38890 GCAACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTC
388 GCGACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
* * * *
38955 AAGAGAATGGGGACTGTTAGGAG
453 AAAAGAATGGAGACTGTAAGGAA
* * * * *
38978 AATTGATGTTTGTCTTATTGAAGGGATGAACTTTCATTTTAAGGAAAATAGGGGAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* * * * * * * *
39043 TTCCATGCAAAAGAAAAACTTTAGTGTCTTTTATCCTATTGAGGAGATTTTGTTTATAGTGTCTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CTT
* * * * *
39108 ATCACAAAAAGATTGGAGATCATTACTACAATCCATATTTGTCTCATTTGAGGCACGGACTTAGA
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * ** * *
39173 CTTTACAATAATTGGTGGGAAGAAAAGC-TTTGTTGCGAGGCCGAAGCTTCAATATCATGTATCC
195 CTTTGCAACAATTGGTGGGAAG-AAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCC
* * *
39237 TTATAAGAAGACTATGTTTATGGTGCTTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCAT
* *
39302 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAAGCTTTTCTTG
324 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTG
* * * * **
39367 CGACTCCAAAGCATC-ATTGTCGTGTATCCTAACGTAGGCAATATGTTTTCACTTCCCAATCTTG
389 CGACACCAAAGCATCAATT-TCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
39431 AAAAGAATGGAGACTGTAAGGAA
453 AAAAGAATGGAGACTGTAAGGAA
* * * * *
39454 AATCGATGCTTATCAAATTCAA-GGATAAACTTTGATTTTAAGGAAAATACGGCAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* *
39518 TTCCATGCAAAAGAAAATCATCAATGTCAATTATCCTAATGAGGAGAATGTGTTTATAGTTCCTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCTT
** *
39583 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAAA
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
39648 CTTTGCCACAATTAGTGAGAAGAAAGCTTTTGTCGCGAAACCAAAGCATCAATATCATGTATCCT
195 CTTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * * *
39713 AATGAGAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATG
* **
39778 TTTGTCTTGTTTAAGAGACTGACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGC
325 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGC
* * * * * * * *
39843 AACACTAAAGCGTCAATGTCGTGTATTCTAACAAAGGGAATGTGTTTTGGTTTCCCAATCCTGAA
390 GACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * *
39908 AAGAATGGGGACTGTTAGGGAG
455 AAGAATGGAGACTG-TAAGGAA
* * * *
39930 AATCGAGGCTTGTCCTATTCAAGGGATGAACTTTCATTTTAAGAAAAATAGGGGAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* * * * *
39995 TTCCATGCAAAAGAAAAACATCAATGTCTTTTATCCTAATGAGAAAAATGTGTTTATAGGGCGTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-TT
* * ** * *
40060 ATCACAAAAGGAACGACCATCATTTCTAGAATCCATGTTTGTCTCATTTGAGGCACTAACTTAGA
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
*
40125 CTTTGCAACAATTGGTGGGAAGAAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATC
195 CTTTGCAACAATTGGTGGGAAGAAAG-CTTT-TGTTGCGAAACCAAAGCATCAATATCATGTATC
*
40190 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTGTGAGTATTCA
258 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCA
* *
40255 TGTTTGTCTTATTTAAGCGACAAACTTTGATTCTATAAAAAACGGCGGGAAGAAAAGCTTTTCTT
323 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTT
* * * *
40320 GCAACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTC
388 GCGACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
* * * *
40385 AAGAGAATGGGGACTGTTAGGAG
453 AAAAGAATGGAGACTGTAAGGAA
* * *
40408 AATTGATGCTTGTCTTATTCAAGGGATGAACTTTCATTTTAAGG-AAATAGGGGAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* * * * * *
40472 TTCCATGCAAAAGAAAAACTTCAATGTCTTTTATCCTATTGAGGAGATTTTGTTTATAGTGTCTT
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CTT
* * * * *
40537 ATCACAAAAAGATTGGAGATCATTACTACAATCCATATTTGTCTCATTTGAGGCACGGACTTAGA
130 ATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * ** *
40602 CTTTACAATAATTGGTGGGAAGAAAAGC-TTTGTTTCGAGGCCAAAGCTTCAATATCATGTATCC
195 CTTTGCAACAATTGGTGGGAAG-AAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * *
40666 TTATAAGAAGACTATGTTTACGGTGCTTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCAT
* *
40731 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCAGGAAGAAAAGCTTTTCTTG
324 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTG
* * * * **
40796 CGACTCCAAAGCATC-ATTGTCGTGTATCCTAACGTAGGCAATATGTTTTCACTTCCCAATCTTG
389 CGACACCAAAGCATCAATT-TCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTG
*
40860 AAAAGAATGGAGACTGTAACGAA
453 AAAAGAATGGAGACTGTAAGGAA
* * * *
40883 AATCGATGCTTATCATATTCAA-GGATAAACTTTGATTTTAAGGAAAATACGGCAAAGAAAAGAT
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
* * * *
40947 TTTCATGCAAAAGAAAATCATCAATGTCAATTATCCTAATGAGGAGAATGTGTTTATAGAGCCTA
66 TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTA
* * *
41012 TCACAAAAAGAATGACGATCATTTCTAGAATCCATGTTTGTTTCATTTGAGGCACGAACTTAGAC
131 TCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
** ** * * * * *
41077 TTTATAGTAATTTGTGGGAAGAAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTGTATCCTA
196 TTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCTA
* * * *
41142 ACGAGAAGACAATGTTTATGGTGCCCAATCTTGAAAAGAATAGGGATTAGTGTGAGTATTCATGT
261 ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGT
* *
41207 TTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACGAG-GGGATGAAAAGCTTTTCTTGC
326 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GCGGGAAGAAAAGCTTTTCTTGC
* * *
41271 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
390 GACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * ** * * *
41336 AGGCATAAAGACTATTATGAA
455 AAGAATGGAGACTGTAAGGAA
* * *
41357 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATA-GAAAATAGGGCAAAGAAAAGA
1 AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTA-AGGAAAATAGGGGAAAGAAAAGA
* * * * * * *
41421 TTTTCATGCAAAAAAAAATCATCAGTATCATTTATCCTAATGCGGAGAATGTGTTTATAGAGCCT
65 TTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTT
* * * * * *
41486 ATCACTAAAAGAA-CAATGATCATTTCGAGAATCCATGTTTGTTTCATTTGAGGCATGAACTTAG
130 ATCACAAAAAGAATGAA-GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* ** * *
41550 ACTTTACAGTAATTGGTGGGAAGAAAGCCTTTGTTGCG------AAGC--C-A-A--A-GCATCC
194 ACTTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * * *
41602 TAATGAGAAAACTATGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTGTGAGTCTTCTT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCAT
* * * *
41667 GTTTGTCTTA-TTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGGAAGAAAAGCATTTCTT
324 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTT
41730 AAGACCCTAA
Statistics
Matches: 4497, Mismatches: 600, Indels: 147
0.86 0.11 0.03
Matches are distributed among these distances:
460 1 0.00
461 46 0.01
462 70 0.02
465 1 0.00
466 1 0.00
467 1 0.00
469 4 0.00
473 5 0.00
474 339 0.08
475 1663 0.37
476 354 0.08
477 668 0.15
478 328 0.07
479 588 0.13
481 3 0.00
485 1 0.00
486 1 0.00
488 2 0.00
493 1 0.00
495 2 0.00
497 1 0.00
500 1 0.00
501 2 0.00
503 145 0.03
504 73 0.02
505 195 0.04
506 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (475 bp):
AATCGATGCTTGTCATATTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTA
TCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
TTTGCAACAATTGGTGGGAAGAAAGCTTTTGTTGCGAAACCAAAGCATCAATATCATGTATCCTA
ATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGT
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGGAAGAAAAGCTTTTCTTGCG
ACACCAAAGCATCAATTTCGTGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA
AGAATGGAGACTGTAAGGAA
Found at i:38952 original size:159 final size:157
Alignment explanation
Indices: 37759--41478 Score: 1249
Period size: 159 Copynumber: 23.4 Consensus size: 157
37749 AACAATTGGT
* * * ** * * *
37759 GGGAAG-AAAGCCTTTGTTGCAAAACCAAAGCATCAATATCATGTATCCTAACAAGAAGACTATG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATGTG
* * * *
37823 TTTATGGTGCCCAATCTTGAAAATAATGGGGATTAGTGTGAGTATTCATGTTTGCCTTATTTAAG
65 TTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTAAG
37888 AGACAAACTTTGATTCTATCAAAAATGGC
130 -GACAAACTTTGATTCTATCAAAAATGGC
* * ** * * * * *
37917 AGGAAGAAAAGCTTTTCTTGCGACTCCAAAGCATCATTGTCGTGTATCCTAACGTAGGCAATATG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGGAATGTG
** * * * ** * * * * *
37982 TTT-TCACTTCCCAATCTTGAAAAGAATAGAGACT-GTAACGA-AAATCAATGCTTATCATATTC
65 TTTAT-GGTTCCCAATCTTGAAAAGAATGGGGATTAGT-GTGAGAATTC-ATGTTTGTCTTATTT
* * *** *
38044 AAGGATAAACTTTGATTTTAAGGAAAAT-AC
127 AAGGACAAACTTTGATTCTATCAAAAATGGC
* ** * * ** *
38074 GGTAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATGTCAAT-TATCCTAATGAGGAGAATG
1 GG-GAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTC-ATGTATCCTAATGAGG-GAATG
* *** *** ** * * * * *
38138 TGTTTATAGTTCTTTATCACAAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTT
63 TGTTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGT-GTGAGAATTCATGTTTGTCTTATTT
* * * ** ** * * * *
38202 GAGGTGCGAACTTAAACTT-TGCCACAATTAGT
127 AAGG-ACAAACTTTGA-TTCTATCAAAAATGGC
* * * * * * *
38234 GAGAAG-AAAGCTTTTGTCGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATGTG
* * * * ** *
38298 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATTCATGTTTGTCTTGTTTAAG
65 TTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTAAG
** * *
38363 AGACTGACTTTGATTCTATCAAAAACGGT
130 -GACAAACTTTGATTCTATCAAAAATGGC
* * * * * * * **
38392 GGGAAGAAAAGCTTTTCTTGCGACACTAAAGCGTCAATTTCGTGTATTCTAACAAAGGGAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAA-TGAGGGAATGTG
* * * * *
38457 TTT-TGGTTTCCCAATCCTGAAAAGAATGGGGACTGTTAG-G-GAGAATTGAGGCTTGTCCTATT
65 TTTATGG-TTCCCAATCTTGAAAAGAATGGGGA---TTAGTGTGAGAATTCATGTTTGTCTTATT
* ** * * **
38519 CAAGGGATGAACTTTCATTTTAAGAAAAATAGG-
126 TAA-GGACAAACTTTGATTCTATCAAAAAT-GGC
* * * * * ** * * * **
38552 GGAAAGAAAAGATTTCCATGAAAAAGAAAAACATCAATGTCTTTTATCCTAATGAGAAAAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATGTG
* *** *** * *** * * * * * *
38617 TTTATAGG-GCGTTATCACAAAAAGAACGACCATCA-TTTCTAGAATCCATGTTTGTCTCATTTG
65 TTTAT-GGTTCCCAATCTTGAAAAGAATGGGGATTAGTGT-GAGAATTCATGTTTGTCTTATTTA
* * * * * *
38680 AGGCACTAACTTAGGCTT-T-GCAATAATTGGT
128 AGG-ACAAACTT-TGATTCTATCAA-AAATGGC
* * * * * * *
38711 GGGAAG-AAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
1 GGGAAGAAAAG-CTTT-TCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATG
* * *
38775 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTA
63 TGTTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTA
*
38840 AGCGACAAACTTTGATTCTATCAAAAACGGC
128 AG-GACAAACTTTGATTCTATCAAAAATGGC
* *
38871 GGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGGAATGTG
* * * * *
38936 TTT-TGGCTTCCCAATCTTCAAGAGAATGGGGACT-GT-TAGGAGAATTGATGTTTGTCTTATTG
65 TTTATGG-TTCCCAATCTTGAAAAGAATGGGGATTAGTGT--GAGAATTCATGTTTGTCTTATTT
** * * ***
38998 AAGGGATGAACTTTCATTTTAAGGAAAATAGG-
127 AA-GGACAAACTTTGATTCTATCAAAAAT-GGC
* * * * ** * * * * * * * * *
39030 GGAAAGAAAAGATTTCCATGCAAAAGAAAAACTTTAGTGTCTTTTATCCTATTGAGGAGATTTTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGG-GAATGTG
* ** *** * * * * * * * * * *
39095 TTTATAGTGT-CTTATCACAAAAAGATTGGAGATCATTACT-ACAATCCATATTTGTCTCATTTG
65 TTTATGGT-TCCCAATCTTGAAAAGAATGGGGATTAGT-GTGAGAATTCATGTTTGTCTTATTTA
** * * *
39158 AGGCACGGACTTAGACTT-TA-CAATAATTGGT
128 AGG-ACAAACTTTGA-TTCTATCAA-AAATGGC
* * ** * * * * * * * *
39189 GGGAAGAAAAGC-TTTGTTGCGAGGCCGAAGCTTCAATATCATGTATCCTTATAAGAAGACTATG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATGTG
* ** *
39253 TTTATGGTGCTTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAG
65 TTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTAAG
39318 AGACAAACTTTGATTCTATCAAAAATGGC
130 -GACAAACTTTGATTCTATCAAAAATGGC
* * ** * * * * *
39347 AGGAAGAAAAGCTTTTCTTGCGACTCCAAAGCATCATTGTCGTGTATCCTAACGTAGGCAATATG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGGAATGTG
** * * * * * **
39412 TTT-TCACTTCCCAATCTTGAAAAGAATGGAGACTGTA-AG-GA-AAATCGATGCTTATCAAATT
65 TTTAT-GGTTCCCAATCTTGAAAAGAATGGGGA-T-TAGTGTGAGAATTC-ATGTTTGTCTTATT
* * * *** *
39473 CAAGGATAAACTTTGATTTTAAGGAAAAT-AC
126 TAAGGACAAACTTTGATTCTATCAAAAATGGC
* * * * ** *
39504 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCAAT-TATCCTAATGAGGAGAATG
1 GG-GAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTC-ATGTATCCTAATGAGG-GAATG
* ** *** ** * * * * *
39568 TGTTTATAGTTCCTTATCACAAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTT
63 TGTTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGT-GTGAGAATTCATGTTTGTCTTATTT
* * * ** ** * * * *
39632 GAGGTGCGAACTTAAACTT-TGCCACAATTAGT
127 AAGG-ACAAACTTTGA-TTCTATCAAAAATGGC
* * * * * * *
39664 GAGAAG-AAAGCTTTTGTCGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATGTG
* * * * ** *
39728 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGAGTGACTATTCATGTTTGTCTTGTTTAAG
65 TTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTAAG
** *
39793 AGACTGACTTTGATTCTATCAAAAACGGC
130 -GACAAACTTTGATTCTATCAAAAATGGC
* * * * * **
39822 GGGAAGAAAAGCTTTTCTTGCAACACTAAAGCGTCAATGTCGTGTATTCTAACAAAGGGAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAA-TGAGGGAATGTG
* * * *
39887 TTT-TGGTTTCCCAATCCTGAAAAGAATGGGGACTGTTAG-G-GAGAA-TCGAGGCTTGTCCTAT
65 TTTATGG-TTCCCAATCTTGAAAAGAATGGGGA---TTAGTGTGAGAATTC-ATGTTTGTCTTAT
* ** * * **
39948 TCAAGGGATGAACTTTCATTTTAAGAAAAATAGG-
125 TTAA-GGACAAACTTTGATTCTATCAAAAAT-GGC
* * * * ** * * * **
39982 GGAAAGAAAAGATTTCCATGCAAAAGAAAAACATCAATGTCTTTTATCCTAATGAGAAAAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATGTG
* *** ** * *** * * * * *
40047 TTTATAGG-GCGTTATC-ACAAAAGGAACGACCATCA-TTTCTAGAATCCATGTTTGTCTCATTT
65 TTTAT-GGTTCCCAATCTTGAAAA-GAATGGGGATTAGTGT-GAGAATTCATGTTTGTCTTATTT
* * * * * *
40109 GAGGCACTAACTTAGACTT-T-GCAACAATTGGT
127 AAGG-ACAAACTTTGA-TTCTATCAA-AAATGGC
* * * * * * *
40141 GGGAAG-AAAGCCTTTGTGTTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
1 GGGAAGAAAAG-CTTT-TCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATG
* * * *
40205 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTACTGTGAGTATTCATGTTTGTCTTATTTA
63 TGTTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTA
* *
40270 AGCGACAAACTTTGATTCTATAAAAAACGGC
128 AG-GACAAACTTTGATTCTATCAAAAATGGC
* *
40301 GGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGGAATGTG
* * * * * *
40366 TTT-TGGCTTCCCAATCTTCAAGAGAATGGGGACT-GT-TAGGAGAATTGATGCTTGTCTTATTC
65 TTTATGG-TTCCCAATCTTGAAAAGAATGGGGATTAGTGT--GAGAATTCATGTTTGTCTTATTT
** *
40428 AAGGGATGAACTTTCATT-T-T-AAGGAAATAGG-
127 AA-GGACAAACTTTGATTCTATCAA--AAAT-GGC
* * * * ** * * * * * * *
40459 GGAAAGAAAAGATTTCCATGCAAAAGAAAAACTTCAATGTCTTTTATCCTATTGAGGAGATTTTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGG-GAATGTG
* ** *** * * * * * * * * * *
40524 TTTATAGTGT-CTTATCACAAAAAGATTGGAGATCATTACT-ACAATCCATATTTGTCTCATTTG
65 TTTATGGT-TCCCAATCTTGAAAAGAATGGGGATTAGT-GTGAGAATTCATGTTTGTCTTATTTA
** * * *
40587 AGGCACGGACTTAGACTT-TA-CAATAATTGGT
128 AGG-ACAAACTTTGA-TTCTATCAA-AAATGGC
* ** * * * * * * *
40618 GGGAAGAAAAGCTTTGT-TT-CGAGGCCAAAGCTTCAATATCATGTATCCTTATAAGAAGACTAT
1 GGGAAGAAAAGCTTT-TCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGAATGT
* * ** *
40681 GTTTACGGTGCTTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAA
64 GTTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTAA
40746 GAGACAAACTTTGATTCTATCAAAAATGGC
129 G-GACAAACTTTGATTCTATCAAAAATGGC
* * ** * * * * *
40776 AGGAAGAAAAGCTTTTCTTGCGACTCCAAAGCATCATTGTCGTGTATCCTAACGTAGGCAATATG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGGAATGTG
** * * ** * * * * *
40841 TTT-TCACTTCCCAATCTTGAAAAGAATGGAGACT-GTAACGA-AAATCGATGCTTATCATATTC
65 TTTAT-GGTTCCCAATCTTGAAAAGAATGGGGATTAGT-GTGAGAATTC-ATGTTTGTCTTATTT
* * *** *
40903 AAGGATAAACTTTGATTTTAAGGAAAAT-AC
127 AAGGACAAACTTTGATTCTATCAAAAATGGC
* * * ** *
40933 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATGTCAAT-TATCCTAATGAGGAGAATG
1 GG-GAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTC-ATGTATCCTAATGAGG-GAATG
* ** * *** ** * * * *
40997 TGTTTATAG-AGCCTATCACAAAAAGAATGACGATCA-TTTCTAGAATCCATGTTTGT-TTCATT
63 TGTTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGT-GAGAATTCATGTTTGTCTT-ATT
* * * * * * *
41059 TGAGGCACGAACTTAGACTT-TAT-AGTAATTTGT
126 TAAGG-ACAAACTTTGA-TTCTATCA-AAAATGGC
* * * * * * * *
41092 GGGAAG-AAAGCCTTTGTTGCAAAACTAAAGCATCAATATCGTGTATCCTAACGAGAAGACA-AT
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAG-GGA-ATGT
* * *
41155 GTTTATGGTGCCCAATCTTGAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAA
64 GTTTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTAA
* *
41220 GAGACAAACTTTAATTCTATCAAAAACGAG-
129 G-GACAAACTTTGATTCTATCAAAAATG-GC
* * *
41250 GGGATGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGGAATGTG
* * *** * * * * *
41315 TTT-TGGCTTCCCAATCTTGAAAGGCATAAAGACTATTATGA-AAATCGATGCTTGTCTTATTTA
65 TTTATGG-TTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTC-ATGTTTGTCTTATTTA
** *
41378 AGGGATGAACTTTGATTTTAT-AGAAAATAGG-
128 A-GGACAAACTTTGATTCTATCA-AAAAT-GGC
** * * ** * * * * *
41409 GCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCAGTATCATTTATCCTAATGCGGAGAATGTG
1 GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGG-GAATGTG
41474 TTTAT
65 TTTAT
41479 AGAGCCTATC
Statistics
Matches: 2513, Mismatches: 866, Indels: 364
0.67 0.23 0.10
Matches are distributed among these distances:
156 5 0.00
157 124 0.05
158 912 0.36
159 997 0.40
160 426 0.17
161 36 0.01
162 13 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (157 bp):
GGGAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGGGAATGTGT
TTATGGTTCCCAATCTTGAAAAGAATGGGGATTAGTGTGAGAATTCATGTTTGTCTTATTTAAGG
ACAAACTTTGATTCTATCAAAAATGGC
Found at i:48025 original size:12 final size:11
Alignment explanation
Indices: 48003--48074 Score: 62
Period size: 12 Copynumber: 6.5 Consensus size: 11
47993 TTATCACTCA
48003 TATCTCTCCTCC
1 TATCTC-CCTCC
48015 TATCATCCCTCC
1 TATC-TCCCTCC
*
48027 TATCT--CTAC
1 TATCTCCCTCC
*
48036 TATCT--ATCC
1 TATCTCCCTCC
48045 TATCTCTCCTCC
1 TATCTC-CCTCC
48057 TATCATCCCTCC
1 TATC-TCCCTCC
48069 TATCTC
1 TATCTC
48075 TTCTTTCTCT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
9 15 0.29
11 3 0.06
12 29 0.57
13 4 0.08
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.40
Consensus pattern (11 bp):
TATCTCCCTCC
Found at i:48075 original size:42 final size:42
Alignment explanation
Indices: 47970--48075 Score: 151
Period size: 42 Copynumber: 2.5 Consensus size: 42
47960 TCTCTCCTCT
* * * *
47970 TCCTGTCATCCCTCCTCTCTCAATTATCACTCATATCTCTCC
1 TCCTATCATCCCTCCTATCTCTACTATCACTCATATCTCTCC
*
48012 TCCTATCATCCCTCCTATCTCTACTATCTA-TCCTATCTCTCC
1 TCCTATCATCCCTCCTATCTCTACTATC-ACTCATATCTCTCC
48054 TCCTATCATCCCTCCTATCTCT
1 TCCTATCATCCCTCCTATCTCT
48076 TCTTTCTCTT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 57 0.98
43 1 0.02
ACGTcount: A:0.16, C:0.43, G:0.01, T:0.40
Consensus pattern (42 bp):
TCCTATCATCCCTCCTATCTCTACTATCACTCATATCTCTCC
Found at i:48853 original size:14 final size:14
Alignment explanation
Indices: 48834--48860 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48824 TTTTCCTCTC
48834 TTTTTGTATTCTTT
1 TTTTTGTATTCTTT
48848 TTTTTGTATTCTT
1 TTTTTGTATTCTT
48861 GAAAAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.78
Consensus pattern (14 bp):
TTTTTGTATTCTTT
Found at i:51703 original size:9 final size:9
Alignment explanation
Indices: 51691--51749 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
51681 CTCTCTCTAT
51691 TATCTCTCC
1 TATCTCTCC
51700 TATCTCTCC
1 TATCTCTCC
* *
51709 T-CCTAT-C
1 TATCTCTCC
*
51716 -ATCCCTCC
1 TATCTCTCC
*
51724 TATCTCTAC
1 TATCTCTCC
*
51733 TATCCCTCC
1 TATCTCTCC
51742 TATCTCTC
1 TATCTCTC
51750 TTCCTATCAT
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.11
9 30 0.81
ACGTcount: A:0.14, C:0.46, G:0.00, T:0.41
Consensus pattern (9 bp):
TATCTCTCC
Found at i:51711 original size:12 final size:12
Alignment explanation
Indices: 51696--51772 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 12
51686 TCTATTATCT
51696 CTCCTATCTCTC
1 CTCCTATCTCTC
51708 CTCCTATCATC-C
1 CTCCTATC-TCTC
51720 CTCCTA--TCT-
1 CTCCTATCTCTC
*
51729 CTACTA--TC-C
1 CTCCTATCTCTC
51738 CTCCTATCTCTC
1 CTCCTATCTCTC
*
51750 TTCCTATCATC-C
1 CTCCTATC-TCTC
51762 CTCCTATCTCT
1 CTCCTATCTCT
51773 TCTTTCTCTT
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
9 14 0.26
11 4 0.08
12 31 0.58
13 4 0.08
ACGTcount: A:0.13, C:0.47, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:51711 original size:42 final size:42
Alignment explanation
Indices: 51659--51772 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 42
51649 CATCTTCTTC
* * * * *
51659 TCTCTTCCTCCTGTCATCCCTGCTCTCTCTATTATCTCTCCTA
1 TCTC-TCCTCCTATCATCCCTCCTATCTCTACTATCCCTCCTA
51702 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCCCTCCTA
1 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCCCTCCTA
*
51744 TCTCTCTTCCTATCATCCCTCCTATCTCT
1 TCTCTCCTCCTATCATCCCTCCTATCTCT
51773 TCTTTCTCTT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
42 61 0.94
43 4 0.06
ACGTcount: A:0.11, C:0.45, G:0.02, T:0.42
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCCCTCCTA
Found at i:51723 original size:24 final size:24
Alignment explanation
Indices: 51687--51772 Score: 94
Period size: 24 Copynumber: 3.8 Consensus size: 24
51677 CCTGCTCTCT
* *
51687 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
51711 CTATCATCCCTCCTA--TCT-CTA
1 CTATCATCCCTCCTATCTCTCCTC
*
51732 C--T-ATCCCTCCTATCTCTCTTC
1 CTATCATCCCTCCTATCTCTCCTC
51753 CTATCATCCCTCCTATCTCT
1 CTATCATCCCTCCTATCTCT
51773 TCTTTCTCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
18 10 0.20
19 1 0.02
20 3 0.06
21 5 0.10
22 3 0.06
23 1 0.02
24 28 0.55
ACGTcount: A:0.14, C:0.44, G:0.00, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:54363 original size:476 final size:474
Alignment explanation
Indices: 53470--56976 Score: 4272
Period size: 476 Copynumber: 7.4 Consensus size: 474
53460 TTGTGAGAAA
** * * * * * *
53470 AATGTGTTTATAGTGCCAAATTAGAAAAAGAATGAAAATCATTAGTAGAATCCATGTTTGTCGCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * * *
53535 TTAGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
* *
53600 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAACCCTGAAAAGATTGGGG
131 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAGAATGGGG
* * * * *
53665 ATTAGTGTGATTATTCTTGTTTGTCTTATTTAAGAGACAAA-TCTTGTTTCTATCAAAAACGACA
195 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGCG
** * * *
53729 GGAAGAAAATTATTTCTTGAGACCCCAAAGCATCAATGTTGTGTATCCTAATGAAGGCAATGTGT
259 GGAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTGT
* * * * ***
53794 TTTGGCTTCCCAATCTTGAAAAGCATAGAGACTGTTACGAGAATTGATGCTTGTCTTATTTGTGG
324 TTTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTCAAGG
* * * * *
53859 GATGAACTTTGATTTTATGGAAAATAGGGTGAAGGAAAGATTTCCATGCAAAAGAAAAGA-GTCA
389 GATGAACTTTCATTTTAAGGAAAATAGGG-AAAGAAAAGATTTCCATGCAAAAGAAAA-ACATCA
* *
53923 ATATCATTTATCCTAATGCGGAG
452 ATGTCATTTATCCTAATGAGGAG
* *
53946 AATGTGTTTATAGTGCCTTATCAAAAAAAGAATGAAGATCATTAGTAGAATCCATATTTGTCTCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * * *
54011 TTTGAGGCACGAACTTAGACTTTACAATAATTAGTGGGAAGAATGCGTTTGTTGCAAAACCAAAG
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
* *
54076 CTTCAATATCATGTACCCTAATGCGAAGACTATGTTTATGGTAG-CTAATCCGAAAAAGAATGGG
131 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGT-GCCTAATCCG-AAAAGAATGGG
* * *
54140 GATTAGCGTGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
194 GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCG
* *
54205 GGAAGAAAAGCATTTCTTGAGACCCCAAAGCTTCAATGTCGTGTATCCTAACGAAGGCAATGTGT
259 GGAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTGT
* * ** *
54270 TTTGGCTTCCCAATCTTGAAAGGAGTGGAGACTATTATAAGAATCGATGCTTGTTTTATTCAAGG
324 TTTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTCAAGG
*
54335 GATAAACTTTCATTTTAA-GAATAATAGGGCAAAGAAAAGA-TTCCATGCAAAAGAAAAACATCA
389 GATGAACTTTCATTTTAAGGAA-AATAGGG-AAAGAAAAGATTTCCATGCAAAAGAAAAACATCA
* * *
54398 ATGTCAATTATCCAAATGCGGAG
452 ATGTCATTTATCCTAATGAGGAG
* *
54421 AATGTGTTTATAGTGCCTTATCAGAAAAAGAATGAAGATCATTAGTAGAATCCATATTTGTCTCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * *
54486 TTTGAGGCACAAACTTAGACTTTACAACAATTGGTAGGAAGAATGCCTTTGTTGCAAAACCAAAG
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
* * *
54551 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTACGGTACCTAATCCTAAAAAGAATGGGG
131 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAGAATGGGG
* * *
54616 ATTAGCGTGAGTATTCATGTTTTTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGCGG
195 ATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGG
* *
54681 GAAGAAAAGCATTTCTTGAGACCCCAAAGCATCAATGTTGTGTATCCTAACGAAGGCAATGTGTT
260 GAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTGTT
* * * *
54746 TTGGCTTCCCAATCTTGAAAGCAGTGGAGACTATTACGAGACTCGATGCTTGTCTTATTCAAGGG
325 TTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTCAAGGG
* * * *
54811 ATGAACTTTCATTTTAAGGATAGTTGGGCAAAGAAATGATTTCCATTG-AAAAGAAAAACATCAA
390 ATGAACTTTCATTTTAAGGAAAATAGGG-AAAGAAAAGATTTCCA-TGCAAAAGAAAAACATCAA
* * *
54875 TGTCAATTATCATAATGTGGAG
453 TGTCATTTATCCTAATGAGGAG
*
54897 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACCAGAATCCATATTTGTCTCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * **
54962 TTTGAGGCACGAACTTAGACTTTGCAACAATTGGTGGGAAGAAAACCTTTGTTGTGAAACCAAAG
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
* * *
55027 CTTCAATATTATGAATCCTAATGAGAAGACTATGTTTATGGGGCCTAATCCTGAAAAGAATGGGG
131 CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAGAATGGGG
* * * *
55092 ATTAGTATGAGT-TTTATTGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAAACGGT
195 ATTAGTGTGAGTATTCA-TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGC
* * * * * *
55156 GGGACGAAAATC-TTCTCTTGCA-ACACCAAAGCATCAACGTCATGTATCCTAATGAAGGAAATG
258 GGGAAGAAAAGCATT-TCTTG-AGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATG
* * * * * *
55219 TGCTTTGGCTTCCCAATCTTGAAAAGAATGGAGACGGTTACGAGAATTGATGTTTGTCTTATTTA
321 TGTTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTCA
* * * *
55284 AGGGTTGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAC
386 AGGGATGAACTTTCATTTTAAGGAAAATAGGG-AAAGAAAAGATTTCCATGCAAAAGAAAAACAT
*
55349 CAATGTAATTTA-CCATAATGAGGAG
450 CAATGTCATTTATCC-TAATGAGGAG
* * * *
55374 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATAATTGCTAGAATCTATGTTTGTCTCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * *
55439 TTTCAAGCATGAACTTAGACTTTACAACAATTGGTGGGGAAGAAAGCCTTT-TCTGCAAAACCAA
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGT-GGGAAGAAAGCCTTTGT-TGCAAAACCAA
* * * * * *
55503 AGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATAGTGCCCAATCTTGAAAAGAATAG
129 AGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CGAAAAGAATGG
* * *
55568 GGATTAGTGTGAGTATTCATGTTGGTCTTATTTTAA-AGACAAACTTTGATTCTTTCAAAAATGG
193 GGATTAGTGTGAGTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACGG
* * * * * * * *
55632 CAGGAAGAAAAGCTTTTCTTGTGACACCAAAGCATCATTATCGTGTATCCTAACGTAGGCAGTAT
257 CGGGAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGT
* * * * *
55697 GTTTTGGCTTCCCAATCTTGAAAGGAATGGAGATTGTAACGAAAATCGATGCTTATCATATTCAA
322 GTTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTCAA
* * *
55762 TCTTGAACGGAATGGAGACTTTGATATTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAA
387 ----G---GG-AT-GA-ACTTTCATTTTAAGGAAAATA-GGGAAAGAAAAGATTTCCATGCAAAA
55827 G----A-A--AA--TC----AT-C----------
441 GAAAAACATCAATGTCATTTATCCTAATGAGGAG
* * ** * *
55837 AATGTGTTTATAGTTCTTTATCACAAAAAGAATGAAGATCATTACTAGAATCCACGTTTCTGTCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * * *
55902 TTTGAGGCGCGAACTTAGACTTTGCCACAATTGGTGAGAAGAAAG-CTTTG-T-CATGAAACCAA
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCA--AAACCAA
* * * * *
55964 AGCATCAATATCATGTATCCTATTGAGAAGACTATGTTTACGATGCCTAATCCTAAAAAGAATGG
129 AGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAGAATGG
* * * * * * *
56029 GGATTAGAGTGACTATTCATATTTGTCTTGTTTAAGAGACAAACTTTGATTTTATTAAAAATGGC
193 GGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGC
* * * * * *
56094 AGGAAGAAAAGCTTTTCTTGCGACACAAAAGCATCAATGTCGTGTATCCTAACAAAGGGAATGTG
258 GGGAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTG
* * * * * * * * *
56159 TTTTGGTTTCCCAATCTTGAAAAGAATGGGGATTGTTAGGGAGAATCGAGGCTTATCCTATTCAG
323 TTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTA-CGAGAATCGATGCTTGTCTTATTCAA
*
56224 GGGATGAACTTTCATTTTAAGGAAAATAGGGGAAAGAAAAGATTTCCATGCAAAAGAAAAACATA
387 GGGATGAACTTTCATTTTAAGGAAAATA-GGGAAAGAAAAGATTTCCATGCAAAAGAAAAACATC
* *
56289 AATGTCTTTTATCCTAATGAGGAA
451 AATGTCATTTATCCTAATGAGGAG
* * * * * * *
56313 AATGTGTTTATGGGGCCTTATCACAAAAAGAACGACGGTCATTTCTAGAATCCATGTTTGTCTCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * ** * *
56378 TTTGAGGCACTAACTTAGACTTTACAATAATTGGTGGGAAGAATCCCTTTGTGTTGCGAAGCCAA
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCC-TT-TGTTGCAAAACCAA
* * *
56443 AGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG
129 AGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CGAAAAGAATGG
*
56508 GGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGCGACAAACTTTGATTCTATCAAAAACGGC
193 GGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGC
* * * *
56573 GGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTG
258 GGGAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTG
* * *
56638 TTTTGGCTTCCCAATCTTGAAAAGAATTGG-GACTGTTAGGAGAATTGATGCTTGTCTTATTCAA
323 TTTTGGCTTCCCAATCTTGAAAGGAA-TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTCAA
* * *
56702 GGGATGAACATTCATTTTAAGGAAAATAGGGGAAAGAAAAGATTTTCATGCAAAAGAAAAACTTC
387 GGGATGAACTTTCATTTTAAGGAAAATA-GGGAAAGAAAAGATTTCCATGCAAAAGAAAAACATC
* *
56767 AATGTCTTTTATCGTAATGAGGAG
451 AATGTCATTTATCCTAATGAGGAG
* ** * *
56791 ATTGTGTTTATAGTGCCTTATCACAAAAAGCTTGGAGATCATTACTAGAATCCATATTTATCTCA
1 AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
* * *
56856 ATTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCGAAATCAAAG
66 TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
* * * * *
56921 CATT-AATATCATGTATCCTAATGAGGAA-AATGTGTTTATAGTGCCAAATCAGAAAA
131 C-TTCAATATCATGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCGAAAA
56977 AAGAATGAAA
Statistics
Matches: 2634, Mismatches: 323, Indels: 149
0.85 0.10 0.05
Matches are distributed among these distances:
452 45 0.02
453 2 0.00
454 2 0.00
455 2 0.00
456 1 0.00
457 1 0.00
458 1 0.00
459 4 0.00
460 6 0.00
461 209 0.08
462 30 0.01
463 86 0.03
465 2 0.00
466 1 0.00
474 3 0.00
475 451 0.17
476 783 0.30
477 397 0.15
478 324 0.12
479 224 0.09
480 6 0.00
481 2 0.00
482 1 0.00
484 2 0.00
485 1 0.00
486 2 0.00
487 44 0.02
488 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (474 bp):
AATGTGTTTATAGTGCCTTATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
TTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAG
CTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAGAATGGGGA
TTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGCGGG
AAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCGTGTATCCTAACGAAGGCAATGTGTTT
TGGCTTCCCAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTCAAGGGA
TGAACTTTCATTTTAAGGAAAATAGGGAAAGAAAAGATTTCCATGCAAAAGAAAAACATCAATGT
CATTTATCCTAATGAGGAG
Found at i:54684 original size:158 final size:160
Alignment explanation
Indices: 53567--54698 Score: 420
Period size: 158 Copynumber: 7.1 Consensus size: 160
53557 TACAAAAATT
* * * *
53567 GGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTA
1 GGTGGGAAGAAAGCATTTCTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGCGAAGACTA
* * * * * * * *
53632 TGTTTATGGTGCCTAACCCTG-AAAAGATTGGGGATTAGTGTGATTATTCTTGTTTGTCTTATTT
66 TGTTTATGGTACCTAATCC-GAAAAAGAATGGAGATTAGCGTGAGTATTCATGTTTTTCTTATTT
*
53696 AAGA-GACAAA-TCTTGTTTCTATCAA-AAAC
130 AAGAGGACAAACT-TTGATTCTATCAACAAAC
*** ** ** * * ** *
53725 GACAGGAAGAAAATTATTTCTTG-AGACCCCAAAGCATCAATGTTGTGTATCCTAAT--GAAGGC
1 GGTGGGAAG-AAAGCATTTCTTGCA-AAACCAAAGCTTCAATATCATGTATCCTAATGCGAAGAC
* * * * * * * * * * *
53787 AATGTGTTTTGGCTTCCCAATCTTG-AAAAGCATAGAGACTGTTA-C--GAGAATTGATGCTTGT
64 TATGT-TTATGG-TACCTAATC-CGAAAAAGAATGGAGA---TTAGCGTGAGTATTCATGTTTTT
** ** * *
53848 CTTATTTGTG-GGATGAACTTTGATTTTATGGAA-AATA-
123 CTTATTTAAGAGGACAAACTTTGATTCTAT-CAACAA-AC
* * ** ** * * *
53885 GG-GTGAAGGAAAG-ATTTCCATGCAAAAGAAAAGAGTCAATATCATTTATCCTAATGCGGAGAA
1 GGTGGGAA-GAAAGCATTT-CTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGCGAAGAC
* * * * ** * * ** * * * * *
53948 TGTGTTTATAGTGCCTTATCAAAAAAAGAATGAAGATCATTAGT-AGAATCCATATTTGTCTCAT
64 TATGTTTATGGTACCTAATCCGAAAAAGAATGGAGATTA-GCGTGAGTATTCATGTTTTTCTTAT
* * * **
54012 TT--GAGGCACGAACTTAGACTT-TA-CAATAATT
128 TTAAGAGG-ACAAACTTTGA-TTCTATCAACAAAC
* * * * *
54043 AGTGGGAAGAATGCGTTTGTTGCAAAACCAAAGCTTCAATATCATGTACCCTAATGCGAAGACTA
1 GGTGGGAAGAAAGCATTTCTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGCGAAGACTA
* *
54108 TGTTTATGGTAGCTAATCCGAAAAAGAATGGGGATTAGCGTGAGTATTCATGTTTTTCTTATTTA
66 TGTTTATGGTACCTAATCCGAAAAAGAATGGAGATTAGCGTGAGTATTCATGTTTTTCTTATTTA
54173 AGA-GACAAACTTTGATTCTATCAA-AAAC
131 AGAGGACAAACTTTGATTCTATCAACAAAC
** * * *
54201 GGTGGGAAGAAAAGCATTTCTTG-AGACCCCAAAGCTTCAATGTCGTGTATCCTAA--CGAAGGC
1 GGTGGGAAG-AAAGCATTTCTTGCA-AAACCAAAGCTTCAATATCATGTATCCTAATGCGAAGAC
* * * * * * * * *** * * *
54263 AATGTGTTTTGGCTTCCCAATCTTG-AAAGGAGTGGAGACTATTATAAG-AATCGATGCTTGTT-
64 TATGT-TTATGG-TACCTAATC-CGAAAAAGAATGGAGATTAGCGTGAGTATTC-ATG-TTTTTC
* * * * ** *
54325 TTATTCAAG-GGATAAACTTTCATTTTAAGAATAATA-
124 TTATTTAAGAGGACAAACTTTGATTCTATCAACAA-AC
** * * ** * * * * * *
54361 GG-GCAAAGAAAAG-ATTCCATGCAAAAGAAAAACATCAATGTCAAT-TATCCAAATGCGGAGAA
1 GGTGGGAAG-AAAGCATTTCTTGCAAAACCAAAGCTTCAATATC-ATGTATCCTAATGCGAAGAC
* * * * * * * ** * * * * *
54423 TGTGTTTATAGTGCCTTATCAGAAAAAGAATGAAGATCATTAGT-AGAATCCATATTTGTCTCAT
64 TATGTTTATGGTACCTAATCCGAAAAAGAATGGAGATTA-GCGTGAGTATTCATGTTTTTCTTAT
* **
54487 TT--GAGGCACAAACTTAGACTT-TA-CAACAATT
128 TTAAGAGG-ACAAACTTTGA-TTCTATCAACAAAC
* * * * *
54518 GGTAGGAAGAATGCCTTTGTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTA
1 GGTGGGAAGAAAGCATTTCTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGCGAAGACTA
* * *
54583 TGTTTACGGTACCTAATCCTAAAAAGAATGGGGATTAGCGTGAGTATTCATGTTTTTCTTATTTA
66 TGTTTATGGTACCTAATCCGAAAAAGAATGGAGATTAGCGTGAGTATTCATGTTTTTCTTATTTA
54648 AGAGG-CAAACTTTGATTCTATCAA-AAAC
131 AGAGGACAAACTTTGATTCTATCAACAAAC
*
54676 GGCGGGAAGAAAAGCATTTCTTG
1 GGTGGGAAG-AAAGCATTTCTTG
54699 AGACCCCAAA
Statistics
Matches: 678, Mismatches: 231, Indels: 129
0.65 0.22 0.12
Matches are distributed among these distances:
156 3 0.00
157 47 0.07
158 298 0.44
159 283 0.42
160 36 0.05
161 8 0.01
162 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.31
Consensus pattern (160 bp):
GGTGGGAAGAAAGCATTTCTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGCGAAGACTA
TGTTTATGGTACCTAATCCGAAAAAGAATGGAGATTAGCGTGAGTATTCATGTTTTTCTTATTTA
AGAGGACAAACTTTGATTCTATCAACAAAC
Found at i:57305 original size:476 final size:470
Alignment explanation
Indices: 56823--61372 Score: 2267
Period size: 476 Copynumber: 9.6 Consensus size: 470
56813 ACAAAAAGCT
** * * *
56823 TGGAGATCATTACTAGAATCCATATTTATCTCAATTGAGGCACGAACTTAGACTTTACAACAATT
1 TGGAGATCATTAGGAGAATCCATATTTGTCT-AATTAAGGCACGAACTTAGACTTTACAATAATT
* * * * *
56888 GGTGGGAAG-AAAGCCTTTGTTGCGAAATCAAAGCATTAATATCATGTATCCTAATGAGGAAAAT
65 GG-GGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTCAT-TATCCTAATGAGGAAAAT
* * * *
56952 GTGTTTATAGTGCCAAATCAGAAAAAAGAATGAAAATCATTGGAGAATCCATGTTTGT-TGCATT
128 GTGTTTATAGTGCCAAATCA-CAAAAAGAATGAAGATCATTGTAGAATCCATATTTGTCT-CATT
* * * *
57016 TAAGGCATGAAAACTTAGACTTTTCAAAAATTGGTGGGAGGAAAGCCTTTGTTGCAAAACCAAAG
191 TGAGGCA-G--AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * *
57081 ATTCAATATCATGTATCCTAACGAGAAGACTATGTTATGGTGCCTAACCGTAAAAAGACTGGGGA
253 ATTCAATATCATGTATCCTAATGAGAAGACTATGTTATGGTGCCTAACCATAAAAAGAATGGGGA
* * *
57146 TTAGTGTGAGTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTCTCTCAAAAATGGCAGG
318 TTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCGGG
** * **
57211 AAGAAAAGCTTTTCTTGCGGCACCAAAGCATCAATGTCGTGTTTCCTAATGAAGGCAATGCATTT
383 AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTT
57276 -TGGCTTCCCAATCTTGGAAAA-AA
448 ATGG-TTCCCAATCTT-GAAAAGAA
** * * * * * ** * *
57299 TGGAGATTGTTAGGAGAATCGATGCTTT-TCTTATTCAAGGGATGAACTTTCATTTTAGGAATAA
1 TGGAGATCATTAGGAGAATCCAT-ATTTGTCTAATT-AAGGCACGAACTTAGACTTTA-CAATAA
** * * * * * * *
57363 TTGGGCAAAGAAAAG-ATTTCCATGCCAAAGAAAAACATCAATGTCAATTATCCTAATGCGGAGA
63 TTGGGGGAAGAAAAGCCTTT-CTTGCAAAAGCAAAGCATCAATGTC-ATTATCCTAATGAGGAAA
* * ** * ***
57427 ATGTGTTTATACTTCCTTATCACAAAAAGAATGATGATCAACACTAGAATCCATATTTGTCTCAT
126 ATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAGATC-ATTGTAGAATCCATATTTGTCTCAT
* * * * *
57492 TTAAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTTGTTGTGAAACCAAAGC
190 TTGAGGCA-GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGA
*
57557 TTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCC-TAAAAAGAATGGGG
254 TTCAATATCATGTATCCTAATGAGAAGACTATG-TTATGGTGCCTAA-CCATAAAAAGAATGGGG
* *
57621 ATTAGGGTGGGTATTCGA-GTCTT-TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGC
317 ATTAGTGTGAGTATTC-ATGT-TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGC
* * * *
57684 GAGAAGAAAAGCTTTTCTTGAGACATCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTG
380 GGGAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTG
* *
57749 TTT-TGGCTTCCCAATCTTGAAAGGAG
445 TTTATGG-TTCCCAATCTTGAAAAGAA
* * ** * * * * * * * *
57775 TGGAGA-CTATTACGAGAATCGATGCTTGCCTTATTCAGGGGATGGACCTT-CATTTTA-AGGAT
1 TGGAGATC-ATTAGGAGAATCCATATTTGTCTAATT-AAGGCA-CGAACTTAGACTTTACA--AT
** * ** * * * * *
57837 AATTGGGCAAAGAAAAGACTTTAATGCAAAAGAAAAACATCAACGTCAATTATCCTAATGCGGAG
61 AATTGGGGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTC-ATTATCCTAATGAGGAA
* ** * *
57902 AATGTGTTTCTAGTGCCTTATCAC-AAAA-AATGAAGATCATTACTAGAATCCATATTTGTCTTA
125 AATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAGATCATT-GTAGAATCCATATTTGTCTCA
* * * **
57965 TTTGAGGCACGAACGTAAACTTTACAACAATTGGTGGGAAGAAAGCCTTTGTTATGAAACCAAAG
189 TTTGAGGCA-GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * * * * * * * **
58030 CATT-AATATCATGTATCCTAAAGAGGAA-AATGTTTTTATAGTGCCAAATCACAAAAAGAATAA
253 -ATTCAATATCATGTATCCTAATGA-GAAGACT-ATGTTATGGTGCCTAACCATAAAAAGAATGG
** * * * ** * * **
58093 AAATCA-TCAGT-AGAATCCATGTTTGTCGCATTT--GAGGCATGAAATTAAACTTC-A-CAATA
315 GGATTAGT--GTGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAA-A
* * * * * * * * * * *
58152 ACTGGTGGGATGAAAA-CCTTTGTTGCAAAACCAAAGCTTCAGTATCATGTATCCTAATGAGAAG
374 AATGGCGGGAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAATGA-AGG
* * * * * * *
58216 -ACTATATTTATGGTACCTAACCCTGAAAAGAA
438 CAATGTGTTTATGGTTCCCAATCTTGAAAAGAA
* * * * * * ** * * *
58248 TGGGGA-C--TAGTGTAAGTATTCATGTTAGTCTTATTTAAGAG-AAAAACTTGGAATCTATCAA
1 TGGAGATCATTAG-G--AGAATCCATATTTGTC-TAATTAAG-GCACGAACTTAGACTTTA-CAA
** * * *** *** * * *
58309 -AAACGACGGGAAGAAAAGCTTTTCTTATGACCCCAAAGCATCAATGTCGTGCATCCTAACGAAG
60 TAATTG-GGGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTCAT-TATCCTAATG-AG
* * * ** * * * *
58373 G-CAATGTGTTT-TGGCT-CCTAATCTTGAAAAA-AATGGAGACTC-TTAGGAGAATCGATACTT
122 GAAAATGTGTTTATAG-TGCCAAATC-ACAAAAAGAATGAAGA-TCATT-GTAGAATCCATATTT
* ** * * * * ** * **
58433 GTCTTATTCAAGGGAAGAACTTTGATTTTA-AGGATAATTGG-GCAAAGAAAAG-GTTT-TCACG
183 GTCTCATTTGA-GGCAGAACTTAGACTTTACA--AAAATTGGTGGGAAG-AAAGCCTTTGTTGCG
** * * * * * * * * *
58494 CAAAAGAAAAATATCAATGTCAAT-TATCCTAATGCGGAGAATGTGTTCATAGTGCC-ATATCAC
244 -AAACCAAAGAT-TCAATATC-ATGTATCCTAATGAGAAGACTATGTT-ATGGTGCCTA-ACCAT
** * * * * * * * * * *
58557 AAAAAGAATGAAGATCATTACT-AGAATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTT
304 AAAAAGAATGGGGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TT
* * * * ** * * *
58620 -TA-CAATAATTGGTGGGAAG-AAAGCCTTTGTTATGAAACCAAAGCATTAATATCATGTATCCT
366 CTATCAA-AAATGGCGGGAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCT
* * * * * ***
58682 AAAG-AGGAAAATGTTTGTTATAGG-GCCAAATCACAAAAAGAA
430 AATGAAGG-CAATGTGT-TTAT-GGTTCCCAATCTTGAAAAGAA
* * * ** * *
58724 TGAAAATCATTAGTAGGAATCCATATTTGTCTCGTTTGAGGCACGAACTTAGACTTTACAACAAT
1 TGGAGATCATTAGGA-GAATCCATATTTGTCT-AATTAAGGCACGAACTTAGACTTTACAATAAT
* * * * *
58789 TGGTTGGAAG-AAAGCCTTTGTTGCAAAAGCAAAGCATTAATATCATGCATCCTAATGAGGAAAA
64 TGG-GGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTCAT-TATCCTAATGAGGAAAA
* * * * * *
58853 TGTGTTTATTGTGCCAAATCATAAAAAGAATGAAAATCATCAGTAGAATCCATGTTTGTCGCATT
127 TGTGTTTATAGTGCCAAATCACAAAAAGAATGAAGATCAT-TGTAGAATCCATATTTGTCTCATT
* * * * *
58918 TGAGGCGTGAACTTAGAGTTTACAAAAACTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCT
191 TGAGGC-AGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGAT
* * * * * *
58983 TCAGTATCATGTGTCCTAATGAGAAGACTATATTTATGGTACCTAACCATGAAAAGAACGGGGAT
255 TCAATATCATGTATCCTAATGAGAAGACTAT-GTTATGGTGCCTAACCATAAAAAGAATGGGGAT
* * ** *
59048 TAGTGTGAGTATTCATGTTAGTCTTATTTAAGAGAAAAACTCGGATTCTATCAAAAATGGTGGGA
319 TAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCGGGA
* * * *
59113 AGAAAAGCTTTTCTTGTG-ATCGCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTT
384 AGAAAAGCTTTTCTTGCGAAAC-CAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTT
59177 -TGGCTTCCCAATCTTGACAAA-AA
448 ATGG-TTCCCAATCTTGA-AAAGAA
* * * * * * * *
59200 TGGAGA-CTGTTAGGAGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTA-AGGATA
1 TGGAGATC-ATTAGGAGAATCCATATTTGTCTAATT-AAGGCACGAACTTAGACTTTACA--ATA
** * * * ** * * *
59263 ATTGGGCAAAGAAAAG-GTTTTTATGCAAAAGAAAAATATCAATGTCAATTATCCTAAAGCGGAG
62 ATTGGGGGAAGAAAAGCCTTTCT-TGCAAAAGCAAAGCATCAATGTC-ATTATCCTAATGAGGAA
* * *
59327 AATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
125 AATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAGATCATT-GTAGAATCCATATTTGTCTCA
* * * * **
59392 TTTGAGGCACAAACTAAGACTTTACAACAATCGGTGGGAAGAAAGCCTTTGTTATGAAACCAAAG
189 TTTGAGGCA-GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAG
* * * * * *
59457 CATT-AATAACATGTATCCTAAAGAGGAA-A--ATGTTTTTGTTGTGCCAAATCACAAAAAGAAT
253 -ATTCAATATCATGTATCCTAATGA-GAAGACTATG-TTATG--GTGCCTAACCATAAAAAGAAT
** * * * * ** * * *
59518 -GAAAATCGT-TAGTAGAATCCATAATTGTCTCATTT--GAGGCATGAACTTAGACTT-TA-CAA
313 GGGGATTAGTGT-G-AGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAA
* ** * * * * * *
59577 CAATTGGTTGGAAG-AAAGCCTTTGTTGCGAAACCAAAGCATTAATATCATGCATCCTAATG-AG
373 -AAATGGCGGGAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAATGAAG
* * * * **
59640 GAAAATGTGTTTATTGTGCCAAATC-AAAAAAGAA
437 G-CAATGTGTTTATGGTTCCCAATCTTGAAAAGAA
* * * * * * * * * * *
59674 TGAAAATCATTAGTAGAATACATGTTTGTCGCATTTGAGGCATGAACTTAGACTTTACAAAAACT
1 TGGAGATCATTAGGAGAATCCATATTTGTC-TAATTAAGGCACGAACTTAGACTTTACAATAATT
* * * * * * * *
59739 GGTGGGAAG-AAAGCCTTTGTTGCAAGACCAATGCTTCAGTATCATGTATCCTAATGA-GAATAC
65 GG-GGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTCAT-TATCCTAATGAGGAA-AA
* * * * * * * ** * * * * * * *
59802 TATATTTATGGTACCTAA-CCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTAGTCTTAT
127 TGTGTTTATAGTGCCAAATCAC-AAAAAGAATGAAGATCATTGT-AGAATCCATATTTGTCTCAT
* * * * * * * * **
59866 TTAAGAGAAAAACTTGGA-TTCTATCAAAACA---GCGGGAAGAAAAGCTTTTCTTGTGACCCCA
190 TTGAG-GCAGAACTTAGACTT-TA-CAAAA-ATTGGTGGGAAG-AAAGCCTTTGTTGCGAAACCA
* * * * * * * * * * * * *
59927 AAGCA-TCAATGTCGTGCATCCTAACGA-AGGCAATGTGTTTTGGTTTCCCAATCTTGCAAAA-A
250 AAG-ATTCAATATCATGTATCCTAATGAGAAG-ACTATGTTATGG-TGCCTAACCAT-AAAAAGA
* * * * * ** * * **
59989 ATGGAGACT-GT-TAGGAG-AATCAATGCTAGTCTTATAAAAGGGA-AGAACTTTGATTTTAAGG
311 ATGGGGATTAGTGT--GAGTATTC-ATGTTTGTCTTATTTAAGAGACA-AACTTTGATTCT-ATC
* * ** * * * ** *
60050 ATAATTGG-GCAAAGAAAAGGTTTTCATGCAAAAGAAAAACATCAATGTCAGT-TATCCTAATG-
371 AAAAATGGCGGGAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTC-GTGTATCCTAATGA
* * * ***
60112 CGGAGAATGTGTTTATAGTGT--CATATCACAAAAAGAA
435 AGG-CAATGTGTTTATGGT-TCCCA-ATCTTGAAAAGAA
* ** * * **
60149 TGAAGATCATTACTAGAATCCATATTTATCTCATTTGTGGCACGAACTTAGACTTTACAATAATT
1 TGGAGATCATTAGGAGAATCCATATTTGTCT-AATTAAGGCACGAACTTAGACTTTACAATAATT
* * * * *
60214 GGTGGGAAG-AAAGCCTTTATTGCGAAACCAAAGCATTAATATCATATATCCTAATGAGGAAAAT
65 GG-GGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTCAT-TATCCTAATGAGGAAAAT
* * *
60278 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAATCCATGTTTGTCGCATTT
128 GTGTTTATAGTGCCAAATCACAAAAAGAATGAAGATCATT-GTAGAATCCATATTTGTCTCATTT
* * *
60343 GAGGCATGAACTTAGAGTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACCAAAGCTT
192 GAGGCA-GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGATT
* * * *
60408 CAATATCATGTATCCTAACGAGAAGACTATGTTTATGGTACCTAACCCTGAAAAGAATGGGGATT
256 CAATATCATGTATCCTAATGAGAAGACTATG-TTATGGTGCCTAACCATAAAAAGAATGGGGATT
* * * *
60473 ACTGTGAGTATTCATGTCTT-TCTTATTTAAGAGACAACCTTTGATTCTATAAAAAACGGCGGGA
320 AGTGTGAGTATTCATGT-TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCGGGA
* * *
60537 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTGTGTATCCTAACGAAGGCAATGTGTTT-
384 AGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTA
60601 TGGCTTCCCAATCTTGGAAAA-AA
449 TGG-TTCCCAATCTT-GAAAAGAA
* * ** * * ** * *
60624 TGGAGA-CTGTTAGGAGAATCGATCCTTGTCTTATTCAAGGAATAAACTTTGATTTTA-AGGATA
1 TGGAGATC-ATTAGGAGAATCCATATTTGTCTAATT-AAGGCACGAACTTAGACTTTACA--ATA
** * * * *
60687 ATTGGGCAAAGAAAAG-ATTTCCATGCAAAAGCAAAGCATCAATGTCAATTATCCTAATGCGGAG
62 ATTGGGGGAAGAAAAGCCTTT-CTTGCAAAAGCAAAGCATCAATGTC-ATTATCCTAATGAGGAA
** * * ** *
60751 AATGTGTTTATAGTGCCTTATCACAAATAGAATGATGATCAATACTAGAATCCATATATGTCTCA
125 AATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAGATC-ATTGTAGAATCCATATTTGTCTCA
* * *
60816 TTTGAGGCACGAACTGT-GACTTTACAATAATTGGTGGGAAGAAAACTTTTGTTGCGAAACCAAA
189 TTTGAGGCA-GAACT-TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAA
* * * * * * *
60880 GCTTCAATATCTTGTATCCTAATAAGAAGACGATGTTTATGGTGCCTAATCTTGAAAAGAATGGG
252 GATTCAATATCATGTATCCTAATGAGAAGACTATG-TTATGGTGCCTAACCATAAAAAGAATGGG
** *
60945 GATTTTTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAATGGCG
316 GATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCG
* * * * * * * ** *
61010 GGAAAAAAAAGCATTTCTTGCGACACCGAAGCATCAATGTCGGGTATTCGAACAAAAGC-ATAGT
381 GG-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAAT-GT
*
61074 GTTT-TGGCTTCCCAATCTTG-AAAGCAG
444 GTTTATGG-TTCCCAATCTTGAAAAG-AA
** * *** * * * **
61101 TGGAGA-CTATTATCAGAAGT-GAGGCTTGTCTTATTCAAGGGATGAACTTTCA-TTT-CGAGGA
1 TGGAGATC-ATTAGGAGAA-TCCATATTTGTCTAATT-AAGGCACGAACTTAGACTTTAC-A--A
** * ** * * * ** * * *
61162 TAATTGGGCAAAGAAATGGTTTTCATGCAAAAGAAAAACATCTGTGTCAATTATCTTGATGCGGA
60 TAATTGGGGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTC-ATTATCCTAATGAGGA
* * * * *
61227 GATTGTG-TTAGTAGTGCCATATCAC-AAAAGAATGAAGATCATTACTAGAATCCATA--TGTGT
124 AAATGTGTTTA-TAGTGCCAAATCACAAAAAGAATGAAGATCATT-GTAGAATCCATATTTGTCT
* * * *
61288 CATTTGAGGTATGAACTTAGACTTTACAACAATTAGTGGGAAGAAAGCCTTTGTTGCAAAACCAA
187 CATTTGAGGCA-GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAA
*
61353 AGCATT-AATATCATATATCC
251 AG-ATTCAATATCATGTATCC
61373 ATGTTTATCT
Statistics
Matches: 3125, Mismatches: 742, Indels: 416
0.73 0.17 0.10
Matches are distributed among these distances:
470 2 0.00
471 2 0.00
472 43 0.01
473 303 0.10
474 488 0.16
475 728 0.23
476 1087 0.35
477 456 0.15
478 13 0.00
479 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (470 bp):
TGGAGATCATTAGGAGAATCCATATTTGTCTAATTAAGGCACGAACTTAGACTTTACAATAATTG
GGGGAAGAAAAGCCTTTCTTGCAAAAGCAAAGCATCAATGTCATTATCCTAATGAGGAAAATGTG
TTTATAGTGCCAAATCACAAAAAGAATGAAGATCATTGTAGAATCCATATTTGTCTCATTTGAGG
CAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCGAAACCAAAGATTCAATA
TCATGTATCCTAATGAGAAGACTATGTTATGGTGCCTAACCATAAAAAGAATGGGGATTAGTGTG
AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGCGGGAAGAAAAG
CTTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAATGAAGGCAATGTGTTTATGGTTCC
CAATCTTGAAAAGAA
Found at i:57592 original size:158 final size:158
Alignment explanation
Indices: 56298--60930 Score: 1341
Period size: 158 Copynumber: 29.2 Consensus size: 158
56288 AAATGTCTTT
* * ** * * * **
56298 TATCCTAATGAGGAA-AATGTGTTTATGGGGCCTTATCACAAAAAGAACGACGGTCATTTCTAGA
1 TATCCTAATGA-GAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGA
* * * **
56362 ATCCATGTTTGTCTCATTTGAGGCACTAACTTAGACTTTACAATAATTGGTGGGAAGAATCCCTT
65 ATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACC-T
* * * *
56427 TGTGTTGCGAAGCCAAAGCATCAATATCGTG
129 T-TGTTGTGAAACCAAAGCTTCAATATCATG
* * *** ** * * *
56458 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGT-GTGAGT
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGT-AGA
* * * * * * ** *
56522 ATTCATGTTTGTCTTATTT-AAGCGACAAACTTTGA-TTCTATCAA-AAACGGCGGGAAGAAAAG
65 ATCCATATTTGTCTCATTTGAGGC-ACGAACTTAGACTT-TA-CAACAATTGGTGGGAAGAAAA-
* * * * * *
56584 CTTTTCTTGCGACACCAAAGCATCAATGTCATG
126 CCTTTGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * *** * * *
56617 TATCCTAACGA-AGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATTG-GGA-CTGTTAGG
1 TATCCTAATGAGA-AGAATATGTTTATGG-TGCCAAATCACAAAAAGAA-TGAAGATC-ATTAGT
** ** * ** * * * * * * *
56678 AGAATTGATGCTTGTCTTATTCAAGGGATGAACATT-CATTTTA-AGGAAAATAGG-GGAAAGAA
62 AGAATCCATATTTGTCTCATTTGAGGCACGAAC-TTAGACTTTACA--ACAATTGGTGGGAAGAA
** ** ** * * * *
56740 AAGATTT-TCATGCAAAAGAAAAACTTCAATGTCTTT
124 AACCTTTGT--TGTGAAACCAAAGCTTCAATATCATG
* * * * * ** ** * *
56776 TATCGTAATGAGGAGATTGTGTTTATAGTGCCTTATCACAAAAAGCTTGGAGATCATTACTAGAA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGAA
* * *
56841 TCCATATTTATCTCAATTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTT
* *
56906 GTTGCGAAATCAAAGCATT-AATATCATG
131 GTTGTGAAACCAAAGC-TTCAATATCATG
* * * * *
56934 TATCCTAATGAGGAA-AATGTGTTTATAGTGCCAAATCAGAAAAAAGAATGAAAATCATT-GGAG
1 TATCCTAATGA-GAAGAATATGTTTATGGTGCCAAATCA-CAAAAAGAATGAAGATCATTAGTAG
* * * * * * *
56997 AATCCATGTTTGT-TGCATTTAAGGCATGAAAACTTAGACTTTTCAAAAATTGGTGGGAGGAAAG
64 AATCCATATTTGTCT-CATTTGAGGCACG--AACTTAGACTTTACAACAATTGGTGGGAAGAAAA
** *
57061 CCTTTGTTGCAAAACCAAAGATTCAATATCATG
126 CCTTTGTTGTGAAACCAAAGCTTCAATATCATG
* * * * ** * ** * * *
57094 TATCCTAACGAGAAGACTATG-TTATGGTGCCTAACCGTAAAAAGACTGGGGATTAGT-GTGAGT
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGT-AGA
* * * * * * * * * **
57157 ATTCATGTTTCTCTTATTTAAGAG-ACAAACTTTGA-TTCTCTCAA-AAATGGCAGGAAGAAAAG
65 ATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTT-T-ACAACAATTGGTGGGAAGAAAA-
* * * ** * * *
57219 CTTTTCTTGCGGCACCAAAGCATCAATGTCGTG
126 CCTTTGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * *** * ** *
57252 TTTCCTAATGA-AGGCA-ATGCATTT-TGGCTTCCCAATCTTGGAAAA-AATGGAGATTGTTAGG
1 TATCCTAATGAGAAGAATATG--TTTATGG-TGCCAAATC-ACAAAAAGAATGAAGATCATTAGT
* * * ** * * ** * * * **
57313 AGAATCGATGCTTT-TCTTATTCAAGGGATGAACTTTCATTTTAGGAATAATTGG-GCAAAGAAA
62 AGAATCCAT-ATTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAACAATTGGTGGGAAGAAA
** ** ** ** * * *
57376 AGATTTCCATGCCAAAGAAAAACATCAATGTCAAT-
125 ACCTTT-GTTGTGAAACCAAAGCTTCAATATC-ATG
* * * ** * ** * ** *
57411 TATCCTAATGCGGAGAATGTGTTTATACTTCCTTATCACAAAAAGAATGATGATCAACACTAGAA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGAA
*
57476 TCCATATTTGTCTCATTTAAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTT
57541 GTTGTGAAACCAAAGCTTCAATATCATG
131 GTTGTGAAACCAAAGCTTCAATATCATG
* * * ** * ** *
57569 TATCCTAATGAGAAGACTATGTTTATGGAGCCTAATC-CTAAAAAGAATGGGGATTA-GGGTGGG
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCAC-AAAAAGAATGAAGATCATTAGT-AG
* * * * * * * * * *
57632 TATTCGAGT-CTT-TCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAA-AAATGGCGAGAAGAA
64 -AATCCA-TATTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAACAATTGGTGGGAAGAA
* * * * * * * *
57692 AAGCTTTTCTTGAGACATCAAAGCATCAATGTCGTG
124 AA-CCTTTGTTGTGAAACCAAAGCTTCAATATCATG
* * * * *** * * *
57728 TATCCTAATGA-AGGCAATGTGTTT-TGGCTTCCCAATCTTGAAAGGAGTGGAGA-CTATTACG-
1 TATCCTAATGAGAAG-AATATGTTTATGG-TGCCAAATCACAAAAAGAATGAAGATC-ATTA-GT
* ** * * * * * * * * * **
57789 AGAATCGATGCTTGCCTTA-TTCAGGGGATGGACCTT-CATTTTA-AGGATAATTGG-GCAAAGA
62 AGAATCCATATTTGTCTCATTTGA-GGCA-CGAACTTAGACTTTACA--ACAATTGGTGGGAAGA
* ** ** ** * * **
57850 AAAGACTTTAATGCAAAAGAAAAACATCAACGTCAAT-
123 AAA-CCTTTGTTGTGAAACCAAAGCTTCAATATC-ATG
* * * * * ** *
57887 TATCCTAATGCGGAGAATGTGTTTCTAGTGCCTTATCAC-AAAA-AATGAAGATCATTACTAGAA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGAA
* * * *
57950 TCCATATTTGTCTTATTTGAGGCACGAACGTAAACTTTACAACAATTGGTGGGAAGAAAGCCTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTT
*
58015 GTTATGAAACCAAAGCATT-AATATCATG
131 GTTGTGAAACCAAAGC-TTCAATATCATG
* * * * * * *
58043 TATCCTAAAGAGGAA-AATGTTTTTATAGTGCCAAATCACAAAAAGAATAAAAATCATCAGTAGA
1 TATCCTAATGA-GAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGA
* * * * * * * * *
58107 ATCCATGTTTGTCGCATTTGAGGCATGAAATTAAACTTCACAATAACTGGTGGGATGAAAACCTT
65 ATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTT
** *
58172 TGTTGCAAAACCAAAGCTTCAGTATCATG
130 TGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * * ** *
58201 TATCCTAATGAGAAGACTATATTTATGGTACCTAA-CCCTGAAAAGAATGGGGA-CTAGT-GTAA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCAC-AAAAAGAATGAAGATC-ATTAGT-A
* * * * * * ** * * * ** **
58263 GTATTCATGTTAGTCTTATTTAAGAG-AAAAACTTGGAATCTATCAA-AAACGACGGGAAGAAAA
63 GAATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTTTA-CAACAATTGGTGGGAAGAAAA
* * * ** * * *
58326 GCTTTTCTTATGACCCCAAAGCATCAATGTCGTG
126 -CCTTTGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * ** * *
58360 CATCCTAACGA-AGGCAATGTGTTT-TGGCT-CCTAATCTTGAAAAA-AATGGAGACTC-TTAGG
1 TATCCTAATGAGAAG-AATATGTTTATGG-TGCCAAATC-ACAAAAAGAATGAAGA-TCATTAGT
* * * ** * * * * * **
58420 AGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTA-AGGATAATTGG-GCAAAGAAA
62 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACA--ACAATTGGTGGGAAGAAA
** *** ** ** *
58483 AGGTTT-TCACGCAAAAGAAAAATATCAATGTCAAT-
125 ACCTTTGTTGTG-AAACCAAAGCT-TCAATATC-ATG
* * * * * * *
58518 TATCCTAATGCGGAGAATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGAA
* *
58583 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTT
*
58648 GTTATGAAACCAAAGCATT-AATATCATG
131 GTTGTGAAACCAAAGC-TTCAATATCATG
* * * *
58676 TATCCTAAAGAGGAA-AATGTTTGTTATAGG-GCCAAATCACAAAAAGAATGAAAATCATTAGTA
1 TATCCTAATGA-GAAGAATATGT-TTAT-GGTGCCAAATCACAAAAAGAATGAAGATCATTAGTA
* * *
58739 GGAATCCATATTTGTCTCGTTTGAGGCACGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGC
63 -GAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAAC
** *
58804 CTTTGTTGCAAAAGCAAAGCATT-AATATCATG
127 CTTTGTTGTGAAACCAAAGC-TTCAATATCATG
* * * * * *
58836 CATCCTAATGAGGAA-AATGTGTTTATTGTGCCAAATCATAAAAAGAATGAAAATCATCAGTAGA
1 TATCCTAATGA-GAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGA
* * ** * * * *
58900 ATCCATGTTTGTCGCATTTGAGGCGTGAACTTAGAGTTTACAAAAACTGGTGGGAAGAAAGCCTT
65 ATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTT
** *
58965 TGTTGCAAAACCAAAGCTTCAGTATCATG
130 TGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * * ** * ** * * *
58994 TGTCCTAATGAGAAGACTATATTTATGGTACCTAACCATGAAAAGAACGGGGATTAGT-GTGAGT
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGT-AGA
* * * * * ** ** *
59058 ATTCATGTTAGTCTTATTTAAGAG-AAAAACTCGGA-TTCTATCAA-AAATGGTGGGAAGAAAAG
65 ATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAACAATTGGTGGGAAGAAAA-
* * * * * *
59120 CTTTTCTTGTG-ATCGCAAAGCATCAATGTCGTG
126 CCTTTGTTGTGAAAC-CAAAGCTTCAATATCATG
* * * * * * ** * * * *
59153 CATCCTAACGA-AGGCAATGTGTTT-TGGCTTCCCAATCTTGACAAA-AATGGAGA-CTGTTAGG
1 TATCCTAATGAGAAG-AATATGTTTATGG-TGCCAAATC-ACAAAAAGAATGAAGATC-ATTAGT
* * * ** * * * * * **
59214 AGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTA-AGGATAATTGG-GCAAAGAAA
62 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACA--ACAATTGGTGGGAAGAAA
** * ** ** *
59277 AGGTTT-TTATGCAAAAGAAAAATATCAATGTCAAT-
125 ACCTTTGTTGTG-AAACCAAAGCT-TCAATATC-ATG
* * * * * * * *
59312 TATCCTAAAGCGGAGAATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGAA
* * * *
59377 TCCATATTTGTCTCATTTGAGGCACAAACTAAGACTTTACAACAATCGGTGGGAAGAAAGCCTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTT
* *
59442 GTTATGAAACCAAAGCATT-AATAACATG
131 GTTGTGAAACCAAAGC-TTCAATATCATG
* * * * *
59470 TATCCTAA--AGAGGAAAATGTTTTTGTTGTGCCAAATCACAAAAAGAATGAAAATCGTTAGTAG
1 TATCCTAATGAGAAGAATATGTTTATG--GTGCCAAATCACAAAAAGAATGAAGATCATTAGTAG
* * * *
59533 AATCCATAATTGTCTCATTTGAGGCATGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGCCT
64 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCT
*
59598 TTGTTGCGAAACCAAAGCATT-AATATCATG
129 TTGTTGTGAAACCAAAGC-TTCAATATCATG
* * * *
59628 CATCCTAATGAGGAA-AATGTGTTTATTGTGCCAAATCA-AAAAAGAATGAAAATCATTAGTAGA
1 TATCCTAATGA-GAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGA
* * * * * * *
59691 ATACATGTTTGTCGCATTTGAGGCATGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTT
65 ATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTT
* * *
59756 TGTTG-CAAGACCAATGCTTCAGTATCATG
130 TGTTGTGAA-ACCAAAGCTTCAATATCATG
* * * * * * * ** * *
59785 TATCCTAATGAGAATACTATATTTATGGTACCTAA-CCCTGAAAAGAATGGGGATTAGT-GTGAG
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCAC-AAAAAGAATGAAGATCATTAGT-AG
* * * * * * ** * ** *
59848 TATTCATGTTAGTCTTATTTAAGAG-AAAAACTTGGA-TTCTATCAA-AA-CAGCGGGAAGAAAA
64 AATCCATATTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-CAACAATTGGTGGGAAGAAAA
* * ** * * *
59909 GCTTTTCTTGTGACCCCAAAGCATCAATGTCGTG
126 -CCTTTGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * * * * *
59943 CATCCTAACGA-AGGCAATGTGTTT-TGGTTTCCCAATCTTGC-AAAA-AATGGAGA-CTGTTAG
1 TATCCTAATGAGAAG-AATATGTTTATGG-TGCCAAATC--ACAAAAAGAATGAAGATC-ATTAG
* * ** * * *** * * * * * **
60003 GAGAATCAATGCTAGTCTTATAAAAGGGAAGAACTTTGATTTTA-AGGATAATTGG-GCAAAGAA
61 TAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACA--ACAATTGGTGGGAAGAA
** ** ** * * *
60066 AAGGTTT-TCATGCAAAAGAAAAACATCAATGTCA-G
124 AACCTTTGT--TGTGAAACCAAAGCTTCAATATCATG
* * * * * * *
60101 TTATCCTAATGCGGAGAATGTGTTTATAGTGTCATATCACAAAAAGAATGAAGATCATTACTAGA
1 -TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGA
* * * *
60166 ATCCATATTTATCTCATTTGTGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTT
65 ATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTT
* * *
60231 TATTGCGAAACCAAAGCATT-AATATCATA
130 TGTTGTGAAACCAAAGC-TTCAATATCATG
* * *
60260 TATCCTAATGAGGAA-AATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGA
1 TATCCTAATGA-GAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGA
* * * * * * *
60324 ATCCATGTTTGTCGCATTTGAGGCATGAACTTAGAGTTTACAAAAATTGGTGAGAAGAAAGCCTT
65 ATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTT
*
60389 TGTTGCGAAACCAAAGCTTCAATATCATG
130 TGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * * ** * *
60418 TATCCTAACGAGAAGACTATGTTTATGGTACCTAA-CCCTGAAAAGAATGGGGATTACT-GTGAG
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCAC-AAAAAGAATGAAGATCATTAGT-AG
* * * * * * * * ** *
60481 TATTCATGTCTT-TCTTATTTAAGAG-AC-AACCTTTGA-TTCTATAAAAAACGGCGGGAAGAAA
64 AATCCATAT-TTGTCTCATTTGAG-GCACGAA-CTTAGACTT-TACAACAATTGGTGGGAAGAAA
* * * * * * **
60542 AGCTTTTCTTGCGACACCAAAGCATCAATGTTGTG
125 A-CCTTTGTTGTGAAACCAAAGCTTCAATATCATG
* * * * * *** * * *
60577 TATCCTAACGA-AGGCAATGTGTTT-TGGCTTCCCAATCTTGGAAAA-AATGGAGA-CTGTTAGG
1 TATCCTAATGAGAAG-AATATGTTTATGG-TGCCAAATC-ACAAAAAGAATGAAGATC-ATTAGT
* ** * ** * ** * * * **
60638 AGAATCGATCCTTGTCTTATTCAAGGAATAAACTTTGATTTTA-AGGATAATTGG-GCAAAGAAA
62 AGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACA--ACAATTGGTGGGAAGAAA
** ** ** * * *
60701 AGATTTCCATGCAAAAGCAAAGCATCAATGTCAAT-
125 ACCTTT-GTTGTGAAACCAAAGCTTCAATATC-ATG
* * * * ** * * * *
60736 TATCCTAATGCGGAGAATGTGTTTATAGTGCCTTATCACAAATAGAATGATGATCAATACTAGAA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGAA
* * *
60801 TCCATATATGTCTCATTTGAGGCACGAACTGT-GACTTTACAATAATTGGTGGGAAGAAAACTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAACAATTGGTGGGAAGAAAACCTT
* *
60865 TGTTGCGAAACCAAAGCTTCAATATCTTG
130 TGTTGTGAAACCAAAGCTTCAATATCATG
* ** *
60894 TATCCTAATAAGAAGACGATGTTTATGGTGCCTAATC
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATC
60931 TTGAAAAGAA
Statistics
Matches: 3288, Mismatches: 945, Indels: 482
0.70 0.20 0.10
Matches are distributed among these distances:
155 2 0.00
156 83 0.03
157 277 0.08
158 1334 0.41
159 1193 0.36
160 389 0.12
161 10 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (158 bp):
TATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCACAAAAAGAATGAAGATCATTAGTAGAA
TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAGAAAACCTTT
GTTGTGAAACCAAAGCTTCAATATCATG
Found at i:58950 original size:793 final size:790
Alignment explanation
Indices: 57887--60425 Score: 4136
Period size: 790 Copynumber: 3.2 Consensus size: 790
57877 CAACGTCAAT
* * * * * ** * *
57887 TATCCTAATGCGGAGAATGTGTTTCTAGTGCCTTATCAC-AAAA-AATGAAGATCATTACTAGAA
1 TATCCTAAAGAGGAAAATGTTTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAA
* * * *
57950 TCCATATTTGTCTTATTTGAGGCACGAACGTAAACTTTACAACAATTGGTGGGAAGAAAGCCTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGCCTTT
** * * * *
58015 GTTATGAAACCAAAGCATTAATATCATGTATCCTAAAGAGGAAAATGTTTTTATAGTGCCAAATC
131 GTTGCGAAACCAAAGCATTAATATCATGCATCCTAATGAGGAAAATGTGTTTATTGTGCCAAATC
* * *
58080 ACAAAAAGAATAAAAATCATCAGTAGAATCCATGTTTGTCGCATTTGAGGCATGAAATTAAACTT
196 A-AAAAAGAATGAAAATCATCAGTAGAATCCATGTTTGTCGCATTTGAGGCATGAACTTAGACTT
* * * *
58145 CACAATAACTGGTGGGATGAAAACCTTTGTTGCAAAACCAAAGCTTCAGTATCATGTATCCTAAT
260 TACAAAAACTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCTTCAGTATCATGTATCCTAAT
* *
58210 GAGAAGACTATATTTATGGTACCTAACCCTGAAAAGAATGGGGACTAGTGTAAGTATTCATGTTA
325 GAGAAGACTATATTTATGGTACCTAACCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTA
* *
58275 GTCTTATTTAAGAGAAAAACTTGGAATCTATCAAAAACGACGGGAAGAAAAGCTTTTCTTATGAC
390 GTCTTATTTAAGAGAAAAACTTGGATTCTATCAAAAACGACGGGAAGAAAAGCTTTTCTTGTGAC
*
58340 CCCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTTTGGCTCCTAATCTTGAAAAAA
455 CCCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTTTGGCTCCCAATCTTGAAAAAA
*
58405 ATGGAGACTCTTAGGAGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTAAGGATAA
520 ATGGAGACTGTTAGGAGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTAAGGATAA
*
58470 TTGGGCAAAGAAAAGGTTTTCACGCAAAAGAAAAATATCAATGTCAATTATCCTAATGCGGAGAA
585 TTGGGCAAAGAAAAGGTTTTCATGCAAAAGAAAAATATCAATGTCAATTATCCTAATGCGGAGAA
58535 TGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATT
650 TGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATT
58600 TGAGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTTTGTTATGAAACCAAAGCA
715 TGAGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTTTGTTATGAAACCAAAGCA
58665 TTAATATCATG
780 TTAATATCATG
*
58676 TATCCTAAAGAGGAAAATGTTTGTTATAGGGCCAAATCACAAAAAGAATGAAAATCATTAGTAGG
1 TATCCTAAAGAGGAAAATGTTT-TTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTA-G
*
58741 AATCCATATTTGTCTCGTTTGAGGCACGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGCCT
64 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGCCT
* *
58806 TTGTTGCAAAAGCAAAGCATTAATATCATGCATCCTAATGAGGAAAATGTGTTTATTGTGCCAAA
129 TTGTTGCGAAACCAAAGCATTAATATCATGCATCCTAATGAGGAAAATGTGTTTATTGTGCCAAA
* *
58871 TCATAAAAAGAATGAAAATCATCAGTAGAATCCATGTTTGTCGCATTTGAGGCGTGAACTTAGAG
194 TCA-AAAAAGAATGAAAATCATCAGTAGAATCCATGTTTGTCGCATTTGAGGCATGAACTTAGAC
*
58936 TTTACAAAAACTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCTTCAGTATCATGTGTCCTA
258 TTTACAAAAACTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCTTCAGTATCATGTATCCTA
* *
59001 ATGAGAAGACTATATTTATGGTACCTAACCATGAAAAGAACGGGGATTAGTGTGAGTATTCATGT
323 ATGAGAAGACTATATTTATGGTACCTAACCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGT
* * **
59066 TAGTCTTATTTAAGAGAAAAACTCGGATTCTATCAAAAATGGTGGGAAGAAAAGCTTTTCTTGTG
388 TAGTCTTATTTAAGAGAAAAACTTGGATTCTATCAAAAACGACGGGAAGAAAAGCTTTTCTTGTG
* * *
59131 ATCGCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGACA
453 ACCCCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTTTGGC-TCCCAATCTTGAAA
59196 AAAATGGAGACTGTTAGGAGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTAAGGA
517 AAAATGGAGACTGTTAGGAGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTAAGGA
* *
59261 TAATTGGGCAAAGAAAAGGTTTTTATGCAAAAGAAAAATATCAATGTCAATTATCCTAAAGCGGA
582 TAATTGGGCAAAGAAAAGGTTTTCATGCAAAAGAAAAATATCAATGTCAATTATCCTAATGCGGA
59326 GAATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTC
647 GAATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTC
* * * *
59391 ATTTGAGGCACAAACTAAGACTTTACAACAATCGGTGGGAAGAAAGCCTTTGTTATGAAACCAAA
712 ATTTGAGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTTTGTTATGAAACCAAA
*
59456 GCATTAATAACATG
777 GCATTAATATCATG
* * *
59470 TATCCTAAAGAGGAAAATGTTTTTGTTGTGCCAAATCACAAAAAGAATGAAAATCGTTAGTAGAA
1 TATCCTAAAGAGGAAAATGTTTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAA
* *
59535 TCCATAATTGTCTCATTTGAGGCATGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGCCTTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGCCTTT
59600 GTTGCGAAACCAAAGCATTAATATCATGCATCCTAATGAGGAAAATGTGTTTATTGTGCCAAATC
131 GTTGCGAAACCAAAGCATTAATATCATGCATCCTAATGAGGAAAATGTGTTTATTGTGCCAAATC
* *
59665 AAAAAAGAATGAAAATCATTAGTAGAATACATGTTTGTCGCATTTGAGGCATGAACTTAGACTTT
196 AAAAAAGAATGAAAATCATCAGTAGAATCCATGTTTGTCGCATTTGAGGCATGAACTTAGACTTT
* *
59730 ACAAAAACTGGTGGGAAGAAAGCCTTTGTTGCAAGACCAATGCTTCAGTATCATGTATCCTAATG
261 ACAAAAACTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCTTCAGTATCATGTATCCTAATG
*
59795 AGAATACTATATTTATGGTACCTAACCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTAG
326 AGAAGACTATATTTATGGTACCTAACCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTAG
59860 TCTTATTTAAGAGAAAAACTTGGATTCTATC-AAAAC-AGCGGGAAGAAAAGCTTTTCTTGTGAC
391 TCTTATTTAAGAGAAAAACTTGGATTCTATCAAAAACGA-CGGGAAGAAAAGCTTTTCTTGTGAC
* *
59923 CCCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTTTGGTTTCCCAATCTTGCAAAA
455 CCCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTTTGG-CTCCCAATCTTGAAAAA
* * * **
59988 AATGGAGACTGTTAGGAGAATCAATGCTAGTCTTATAAAAGGGAAGAACTTTGATTTTAAGGATA
519 AATGGAGACTGTTAGGAGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTAAGGATA
* *
60053 ATTGGGCAAAGAAAAGGTTTTCATGCAAAAGAAAAACATCAATGTCAGTTATCCTAATGCGGAGA
584 ATTGGGCAAAGAAAAGGTTTTCATGCAAAAGAAAAATATCAATGTCAATTATCCTAATGCGGAGA
* * *
60118 ATGTGTTTATAGTGTCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTATCTCAT
649 ATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCAT
* * **
60183 TTGTGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTTTATTGCGAAACCAAAGC
714 TTGAGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTTTGTTATGAAACCAAAGC
*
60248 ATTAATATCATA
779 ATTAATATCATG
* *
60260 TATCCTAATGAGGAAAATGTGTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAA
1 TATCCTAAAGAGGAAAATGTTTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAA
* * * * *
60325 TCCATGTTTGTCGCATTTGAGGCATGAACTTAGAGTTTACAAAAATTGG-TGAGAAGAAAGCCTT
66 TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTTG-GAAGAAAGCCTT
*
60389 TGTTGCGAAACCAAAGC-TTCAATATCATGTATCCTAA
130 TGTTGCGAAACCAAAGCATT-AATATCATGCATCCTAA
60426 CGAGAAGACT
Statistics
Matches: 1623, Mismatches: 118, Indels: 17
0.92 0.07 0.01
Matches are distributed among these distances:
789 22 0.01
790 499 0.31
791 218 0.13
792 144 0.09
793 441 0.27
794 299 0.18
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (790 bp):
TATCCTAAAGAGGAAAATGTTTTTATAGTGCCAAATCACAAAAAGAATGAAAATCATTAGTAGAA
TCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTTGGAAGAAAGCCTTT
GTTGCGAAACCAAAGCATTAATATCATGCATCCTAATGAGGAAAATGTGTTTATTGTGCCAAATC
AAAAAAGAATGAAAATCATCAGTAGAATCCATGTTTGTCGCATTTGAGGCATGAACTTAGACTTT
ACAAAAACTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCTTCAGTATCATGTATCCTAATG
AGAAGACTATATTTATGGTACCTAACCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTAG
TCTTATTTAAGAGAAAAACTTGGATTCTATCAAAAACGACGGGAAGAAAAGCTTTTCTTGTGACC
CCAAAGCATCAATGTCGTGCATCCTAACGAAGGCAATGTGTTTTGGCTCCCAATCTTGAAAAAAA
TGGAGACTGTTAGGAGAATCGATACTTGTCTTATTCAAGGGAAGAACTTTGATTTTAAGGATAAT
TGGGCAAAGAAAAGGTTTTCATGCAAAAGAAAAATATCAATGTCAATTATCCTAATGCGGAGAAT
GTGTTCATAGTGCCATATCACAAAAAGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTT
GAGGCACGAACTTAGACTTTACAATAATTGGTGGGAAGAAAGCCTTTGTTATGAAACCAAAGCAT
TAATATCATG
Found at i:62479 original size:477 final size:472
Alignment explanation
Indices: 61387--62992 Score: 1915
Period size: 474 Copynumber: 3.4 Consensus size: 472
61377 TTATCTCATG
* * * * * *
61387 TATCCTAATG-AGGAAAATGTGTTTATTGTGCCAAATCACAAAAAGAAAGAA-ATCATCAGTAGA
1 TATCCTAATGTA-GAGAATGTGTTTATAGTGCCATATCAC-AAAAGAATGAAGATAAT-ACTAGA
* * * *
61450 ATCCATGTTTGT-TACATTTGAGGCA-TGAACTTAGAGTTTACAAAAACTGGTGGGAAGAAAGCC
63 ATCCATATTTGTCT-CATTTGAGGCACT-AACTTAGACTTTACAACAATTGGTGGGAAGAAAGCC
* * * * *
61513 TTTGTTGCAAAACCAAAGCTTCAGTATCATGTGTCCTAATAAGAAGACTATATTTATGGTACCTA
126 TTTGTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
61578 ACCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTAGTCTTTTTTAAGAGACAAAC-TTGA
191 ACCCTGAAAAGAATGGGAATTAGTGTGAGTATTCATGTT-TTCTTATTTAAGAGACAAACTTTGA
* * * * *
61642 TTCTGTCAAAAAC-GACGAGAAGAAAAGCTTTTCTTGGGACCCCAAAGCATCAATGTCGTGCATC
255 TTCTATCAAAAACGGA-GGGAAGAAAAGCTTTTCTTGCGACACC-AAGCATCAATGTCGTGTATC
* * *
61706 CTAACGAAGGCAATGTGTTTTGGCTTTCCAATCTTGAAAAAATTGGAGACTATTAGGAGAATCGA
318 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTATTTGGAGAATCGA
* * * * *
61771 AGCTTGTCTTATTCAAGGGAAGAACTTTGATTTTACGGATAATGGGGCAAAGAAGAGGTTTTCAT
383 AGCTTGTCTTATTCAAGGGATGAACTTTAATTTTAAGGATAATTGGGCAAAGAAAAGGTTTTCAT
* *
61836 G-TAAAGAAAAACTTCAATGTCAAT
448 GCAAAAGAAAAACATCAATGTCAAT
* * *
61860 TATCCTAATGTAGAAAATGTGTTTGTAGTGCCATATCACAGAAAGAATGAAGATTATGACTAGAA
1 TATCCTAATGTAGAGAATGTGTTTATAGTGCCATATCACA-AAAGAATGAAGATAAT-ACTAGAA
* * *
61925 TCCATATTTGTCTCATTTGAGGCACGAACATAGACTTTACAACAATTGGTGGGAAGAAATCCTTT
64 TCCATATTTGTCTCATTTGAGGCACTAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTT
* * *
61990 GTTGTAAAACCAAAGCTTCAATATCATGTATCCTAACGAGAAGACTATGTTTACGGTGCCTAACC
129 GTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAACC
* *
62055 CTGAAAGGAATGGGAATTAGTGTGAGTATTCATGTCTTTCTTATTTAAGAGACAACCTTTGATTC
194 CTGAAAAGAATGGGAATTAGTGTGAGTATTCATGT-TTTCTTATTTAAGAGACAAACTTTGATTC
* * *
62120 TATCAAAAACGGTGGGAAGAAAGGCTTTTCTTGCTACACCATAGCATCAATGTCGTGTATCCTAA
258 TATCAAAAACGGAGGGAAGAAAAGCTTTTCTTGCGACACCA-AGCATCAATGTCGTGTATCCTAA
* * *
62185 CGAAGGCAATGTGTTTTGGCTTCCCAATCTTGGAAAAAAATGGAGAATGTTTGGAGAATCGATGC
322 CGAAGGCAATGTGTTTTGGCTTCCCAATCTT-GAAAAAAATGGAGACTATTTGGAGAATCGAAGC
** *
62250 TTGTCTTATTCAAGGGATGAACTTTAATTTTAAGGATAATTGGGCAAAGAAAAAAATTTCCATGC
386 TTGTCTTATTCAAGGGATGAACTTTAATTTTAAGGATAATTGGGCAAAG-AAAAGGTTTTCATGC
*
62315 AAAAGAAAAGCATCAATGTCAAT
450 AAAAGAAAAACATCAATGTCAAT
** * * *
62338 TATCCTAATGCGGAGAATGTGTTTATAGTACC-TGATCACAAAAGAATGATGATCAATACCAGAA
1 TATCCTAATGTAGAGAATGTGTTTATAGTGCCAT-ATCACAAAAGAATGAAGAT-AATACTAGAA
*
62402 TCCATATATGTCTCATTTGAGGCACTAA-TTGAGACTTTACAACAATTGGTGGGAAGAGAA-CCT
64 TCCATATTTGTCTCATTTGAGGCACTAACTT-AGACTTTACAACAATTGGTGGGAAGA-AAGCCT
62465 TTGTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
127 TTGTTGCAAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * ** *
62530 TCCAGAAAAGAATAGGGATTTTTTGTGAGTATTGATGTTTGTCTTATTTAAGAGACAAACTTTGA
192 CCCTGAAAAGAAT-GGGAATTAGTGTGAGTATTCATGTTT-TCTTATTTAAGAGACAAACTTTGA
* * * * * * *
62595 TTCAATCAAAAATGGAGGGAAAAAAAAGCATTTCTTGCGACACTGAAGCATCAATGTCGGGTATT
255 TTCTATCAAAAACGGAGGG-AAGAAAAGCTTTTCTTGCGACAC-CAAGCATCAATGTCGTGTATC
* * * * ** * *
62660 CGAACAAAAGCAAAGTGTTTTGGCTTCCCAATCTTGAAAGGAGTGGAGGACTATTAT-CAGAAAG
318 CTAACGAAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGA-GACTATT-TGGAG-AA-
* * **
62724 T-GAGGCTTGTCTTATTCAAGGGATGAACTTTCATTTCGAGGATAATTGGGCAAAGAAAAGGTTT
379 TCGAAGCTTGTCTTATTCAAGGGATGAACTTTAATTTTAAGGATAATTGGGCAAAGAAAAGGTTT
* * *
62788 TCATGCACAAGAAAAACGTCAATGTTAAT
444 TCATGCAAAAGAAAAACATCAATGTCAAT
* * **
62817 TATCCTAACGTAGAGAATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATTGTTACTAGAA
1 TATCCTAATGTAGAGAATGTGTTTATAGTGCCATATCAC-AAAAGAATGAAGA-TAATACTAGAA
* * *
62882 TCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTTACATCAATCGGTGGGGGTGGGAAGAAG
64 TCCATATTTGTCTCATTTGAGGCACTAACTTAGACTTTACAACAAT---T---GGTGGGAAGAAA
* ** *
62947 GCCTTTATTGTGAAACCAAAGCATT-AATATCATATATCCTAATGAG
123 GCCTTTGTTGCAAAACCAAAGC-TTCAATATCATGTATCCTAATGAG
62993 GAAAATGTGT
Statistics
Matches: 975, Mismatches: 122, Indels: 59
0.84 0.11 0.05
Matches are distributed among these distances:
472 1 0.00
473 43 0.04
474 174 0.18
475 92 0.09
476 75 0.08
477 158 0.16
478 125 0.13
479 137 0.14
480 114 0.12
481 4 0.00
483 1 0.00
485 1 0.00
486 48 0.05
487 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (472 bp):
TATCCTAATGTAGAGAATGTGTTTATAGTGCCATATCACAAAAGAATGAAGATAATACTAGAATC
CATATTTGTCTCATTTGAGGCACTAACTTAGACTTTACAACAATTGGTGGGAAGAAAGCCTTTGT
TGCAAAACCAAAGCTTCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAACCCT
GAAAAGAATGGGAATTAGTGTGAGTATTCATGTTTTCTTATTTAAGAGACAAACTTTGATTCTAT
CAAAAACGGAGGGAAGAAAAGCTTTTCTTGCGACACCAAGCATCAATGTCGTGTATCCTAACGAA
GGCAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATGGAGACTATTTGGAGAATCGAAGCTTGTC
TTATTCAAGGGATGAACTTTAATTTTAAGGATAATTGGGCAAAGAAAAGGTTTTCATGCAAAAGA
AAAACATCAATGTCAAT
Found at i:63140 original size:162 final size:160
Alignment explanation
Indices: 62832--63154 Score: 382
Period size: 162 Copynumber: 2.0 Consensus size: 160
62822 TAACGTAGAG
* * * * ** *
62832 AATGTGTTCATAGTGCCATATCACAAAAAGAATGAAGATTGTTACTAGAATCCATATTTGTCTCA
1 AATGTGTTAATAGTGCCAAATCACAAAAAGAACGAAAATCATTACTAGAATCCATATTTGTCACA
** * *
62897 TTTGAGGCACAAACTTAGACTTTACATCAATCGGTGGGGGTGGGAAGAAGGCCTTTATTGTGAAA
66 TTTGAGGCACAAACTTAGACTTTACAAAAAT--GT--GGGTGGGAAGAAAGCCTTTATTGCGAAA
*
62962 CCAAAGCATTAATATCATATATCCTAATGAGGAA
127 CCAAAGCATTAATATCAGATATCCTAATGAGGAA
* *
62996 AATGTGTTTAATAGTGCCAAATCACAAAAAAAGAACGAAAATCATTAGTAGAATCCATTGTTTGT
1 AATGTG-TTAATAGTGCCAAATCAC--AAAAAGAACGAAAATCATTACTAGAATCCA-TATTTGT
** *
63061 CACATTTGAGGCATGAACTTAGACTTTACAAAAAT-T-GGTGGGAAGAAAGCCTTTGTTGCGAAA
62 CACATTTGAGGCACAAACTTAGACTTTACAAAAATGTGGGTGGGAAGAAAGCCTTTATTGCGAAA
*
63124 CCAAAGC-TTCAATATCAGGTATCCTAATGAG
127 CCAAAGCATT-AATATCAGATATCCTAATGAG
63155 AAGACTTAGT
Statistics
Matches: 136, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
161 2 0.01
162 50 0.37
164 6 0.04
165 17 0.12
167 25 0.18
168 36 0.26
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (160 bp):
AATGTGTTAATAGTGCCAAATCACAAAAAGAACGAAAATCATTACTAGAATCCATATTTGTCACA
TTTGAGGCACAAACTTAGACTTTACAAAAATGTGGGTGGGAAGAAAGCCTTTATTGCGAAACCAA
AGCATTAATATCAGATATCCTAATGAGGAA
Done.