genome.fa.s831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold831
Parameters: 2 7 7 80 10 50 1000
Length:  58181

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63--452	202	1.9	199	89	4	606	45	6	8	40	1.59
1451--1511	26	2.3	27	80	8	72	44	3	1	50	1.28
4069--4108	18	2.3	18	86	4	55	50	0	5	45	1.23
5307--5347	21	2.0	21	85	9	57	36	29	7	26	1.83
6850--7010	53	3.0	53	100	0	322	26	20	18	34	1.96
6984--7050	20	3.7	20	74	25	85	29	16	17	35	1.92
6985--7083	33	3.0	33	95	4	175	31	15	17	36	1.90
7005--7063	13	5.0	13	76	19	67	33	15	16	33	1.91
7152--7176	13	1.9	13	100	0	50	36	16	16	32	1.90
11881--11906	13	2.0	13	100	0	52	38	15	15	30	1.88
15105--15145	21	2.0	21	85	9	57	26	7	29	36	1.83
16344--16383	18	2.3	18	86	4	55	45	5	0	50	1.23
19504--19566	25	2.5	26	75	12	60	44	6	1	47	1.38
20003--20749	217	3.5	205	86	5	864	40	8	6	44	1.61
20974--21014	20	2.0	20	100	0	82	24	14	14	46	1.82
21091--21143	13	4.5	13	71	26	55	33	13	16	35	1.88
21075--21143	33	2.1	33	89	5	104	31	13	18	36	1.89
22205--22256	21	2.4	21	84	9	61	34	9	25	30	1.88
24935--24960	4	6.5	4	100	0	52	76	0	23	0	0.78
26338--26418	26	3.2	25	73	19	80	59	1	2	37	1.19
26467--26495	13	2.1	14	93	6	51	79	0	0	20	0.74
27378--28202	219	3.8	208	86	6	984	38	9	7	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28041--28376	170	2.0	166	86	4	469	38	9	6	45	1.61
30644--30726	43	1.9	43	80	4	96	48	1	2	48	1.22
34160--34184	2	12.5	2	100	0	50	0	0	48	52	1.00
35920--35963	2	22.0	2	92	0	70	52	2	0	45	1.13
35986--36020	2	17.5	2	93	0	61	51	0	0	48	1.00
35897--36020	66	1.9	66	91	0	203	50	8	5	36	1.56
36560--36589	15	1.9	16	93	6	53	23	6	0	70	1.11
41358--41413	17	3.3	17	74	0	58	1	19	0	78	0.84
42649--43081	32	13.6	32	93	0	715	16	18	34	30	1.93
43073--44243	27	43.0	27	93	1	1919	28	14	34	22	1.93
43073--44243	163	7.2	162	93	1	1919	28	14	34	22	1.93
53964--54223	50	5.2	50	87	0	340	33	18	18	30	1.94

Tables:   1

The End!