Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold834
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104694
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Found at i:1503 original size:22 final size:19
Alignment explanation
Indices: 1462--1508 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
1452 ATATCAGGAC
*
1462 AAAAAATAAAAATTAATTT
1 AAAAAATAAAAAATAATTT
1481 AAAAAATCAAATAAATAACTTT
1 AAAAAAT-AAA-AAATAA-TTT
1503 AAAAAA
1 AAAAAA
1509 AATTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 7 0.29
20 3 0.12
21 5 0.21
22 9 0.38
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAAAATAAAAAATAATTT
Found at i:2064 original size:33 final size:33
Alignment explanation
Indices: 2005--2067 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
1995 CCATAAGAGC
* *
2005 CATGTGTGCTTTGTTATATTCCAAGCAAATTTG
1 CATGTATGCTTTGTTATATGCCAAGCAAATTTG
* *
2038 CATGTATGCTTTGTTATCTGCTAAGCAAAT
1 CATGTATGCTTTGTTATATGCCAAGCAAAT
2068 CTATCGTTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41
Consensus pattern (33 bp):
CATGTATGCTTTGTTATATGCCAAGCAAATTTG
Found at i:2734 original size:12 final size:14
Alignment explanation
Indices: 2707--2755 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
2697 TTTTACGTTT
2707 AAAATTATTATTTA
1 AAAATTATTATTTA
2721 AAAATT-TT-TTTAA
1 AAAATTATTATTT-A
*
2734 AAAATTTATGATTTA
1 AAAA-TTATTATTTA
2749 AAAATTA
1 AAAATTA
2756 ATTTTTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
12 3 0.10
13 7 0.23
14 11 0.37
15 6 0.20
16 3 0.10
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
AAAATTATTATTTA
Found at i:2736 original size:13 final size:13
Alignment explanation
Indices: 2707--2754 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
2697 TTTTACGTTT
2707 AAAATTATTATTTA
1 AAAATT-TTATTTA
2721 AAAATTTT-TTTAA
1 AAAATTTTATTT-A
2734 AAAATTTATGATTTA
1 AAAATTT-T-ATTTA
2749 AAAATT
1 AAAATT
2755 AATTTTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.10
13 10 0.33
14 7 0.23
15 7 0.23
16 3 0.10
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (13 bp):
AAAATTTTATTTA
Found at i:2769 original size:17 final size:17
Alignment explanation
Indices: 2749--2782 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
2739 TTATGATTTA
2749 AAAATTAATTTT-TTAAT
1 AAAA-TAATTTTATTAAT
2766 AAAATAATTTTATTAAT
1 AAAATAATTTTATTAAT
2783 TTTGTATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAATAATTTTATTAAT
Found at i:2775 original size:16 final size:16
Alignment explanation
Indices: 2745--2782 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2735 AAATTTATGA
*
2745 TTTAA-AAATTAATTT
1 TTTAATAAAATAATTT
2760 TTTAATAAAATAATTT
1 TTTAATAAAATAATTT
2776 TATTAAT
1 T-TTAAT
2783 TTTGTATCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 5 0.25
16 10 0.50
17 5 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAATAAAATAATTT
Found at i:4276 original size:9 final size:9
Alignment explanation
Indices: 4262--4295 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
4252 TTATTTAAAT
4262 ATAAAATAA
1 ATAAAATAA
4271 ATAAAATAA
1 ATAAAATAA
4280 ATAAAATATA
1 ATAAAATA-A
4290 ATAAAA
1 ATAAAA
4296 AATAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAAAATAA
Found at i:4313 original size:18 final size:17
Alignment explanation
Indices: 4262--4305 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
4252 TTATTTAAAT
4262 ATAAAATA-AATAAAATAA
1 ATAAAATATAAT-AAA-AA
4280 ATAAAATATAATAAAAA
1 ATAAAATATAATAAAAA
4297 AT-AAATATA
1 ATAAAATATA
4306 TTTTAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.28
17 4 0.16
18 11 0.44
19 3 0.12
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
ATAAAATATAATAAAAA
Found at i:4882 original size:18 final size:18
Alignment explanation
Indices: 4859--4902 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
4849 TTGTATAATT
4859 TTTTTAAA-GTATGTTTTA
1 TTTTTAAATGTAT-TTTTA
*
4877 TTTTTAAATTTATTTTTA
1 TTTTTAAATGTATTTTTA
4895 TTTTTAAA
1 TTTTTAAA
4903 AATATTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTTTAAATGTATTTTTA
Found at i:4908 original size:18 final size:18
Alignment explanation
Indices: 4858--4936 Score: 59
Period size: 18 Copynumber: 4.2 Consensus size: 18
4848 TTTGTATAAT
* *
4858 TTTTTTAAAGTATGTTTTA
1 TTTTTAAAAATAT-TTTTA
**
4877 TTTTTAAATTTATTTTTA
1 TTTTTAAAAATATTTTTA
4895 TTTTTAAAAATATTATTATA
1 TTTTTAAAAATATT-TT-TA
* * *
4915 ATCTTAAAATATATTTTAA
1 TTTTTAAAA-ATATTTTTA
4934 TTT
1 TTT
4937 ATTATTATGA
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
18 17 0.36
19 14 0.30
20 11 0.23
21 5 0.11
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTTAAAAATATTTTTA
Found at i:7721 original size:88 final size:88
Alignment explanation
Indices: 7572--7995 Score: 430
Period size: 88 Copynumber: 4.8 Consensus size: 88
7562 AAAAGATGCA
* * *
7572 TAATATATTTCTTAGAACCTAAAAGATATGACAGATGCATA-AGGTATCAGA-TTCTTTTTGACA
1 TAATAAATTTCTTGGAACCTGAAAGATATGACAGATGCATAGA-GTATCAGATTTC-TTTTGACA
*
7635 CGATAGAAAATATTT-GACTAATACT
64 CGATAGAAAATATTTAG-CTAATACC
* * * *
7660 TAATAAATTTTTTGGAACTTGAAAGATGTGACAGATGCATAGAGTATCGGATTTCTTTTGACACG
1 TAATAAATTTCTTGGAACCTGAAAGATATGACAGATGCATAGAGTATCAGATTTCTTTTGACACG
* * *
7725 ACAAAAAATATTTAGCCAATACC
66 ATAGAAAATATTTAGCTAATACC
* * * * * *
7748 TAATAAATTTTTTGGAACCTGAAAGATATGACAGATGCATAGAGTATCAAATTCCTTCTGATATG
1 TAATAAATTTCTTGGAACCTGAAAGATATGACAGATGCATAGAGTATCAGATTTCTTTTGACACG
* *
7813 ATAG-AAATATTTAGCTAATGCT
66 ATAGAAAATATTTAGCTAATACC
* * * * * * *
7835 TAATAAATTTCTTGAAACCCT-AAAGATATGAAAGATACATGGGGTATCAGATTTCTTGTGATAC
1 TAATAAATTTCTTGGAA-CCTGAAAGATATGACAGATGCATAGAGTATCAGATTTCTTTTGACAC
* *
7899 AATAGAAAATATTT-GACTAAAACC
65 GATAGAAAATATTTAG-CTAATACC
* * * * *
7923 TAATAAATTTCTTCGAACCCGAAAGATGTGACAGATACAT-GAGATATCAGATTTCTTTTAACAC
1 TAATAAATTTCTTGGAACCTGAAAGATATGACAGATGCATAGAG-TATCAGATTTCTTTTGACAC
* *
7987 AACAGAAAA
65 GATAGAAAA
7996 AAGTTAATTA
Statistics
Matches: 280, Mismatches: 48, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
87 74 0.26
88 201 0.72
89 5 0.02
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (88 bp):
TAATAAATTTCTTGGAACCTGAAAGATATGACAGATGCATAGAGTATCAGATTTCTTTTGACACG
ATAGAAAATATTTAGCTAATACC
Found at i:7891 original size:175 final size:176
Alignment explanation
Indices: 7572--7971 Score: 443
Period size: 175 Copynumber: 2.3 Consensus size: 176
7562 AAAAGATGCA
* * * * *
7572 TAATATATTTCTTAGAACCTAAAAGATATGACAGATGCATA-AGGTATCAGATTCTTTTTGACAC
1 TAATAAATTTCTTAGAACCTGAAAGATATGACAGATGCATAGA-GTATCAAATTCCTTCTGACAC
* * * * * *
7636 GATAGAAAATATTTGACTAATACTTAATAAATTTTTTGGAACTTGAAAGATGTGACAGATGCATA
65 GATAGAAAATATTTGACTAATACTTAATAAATTTCTTGAAACCTGAAAGATATGAAAGATACATA
* * * *
7701 GAGTATCGGATTTCTTTTGACACGACAAAAAATATTT-AGCCAATACC
130 GAGTATCAGATTTCTTGTGACACAACAAAAAATATTTGA-CCAAAACC
* * * *
7748 TAATAAATTTTTTGGAACCTGAAAGATATGACAGATGCATAGAGTATCAAATTCCTTCTGATATG
1 TAATAAATTTCTTAGAACCTGAAAGATATGACAGATGCATAGAGTATCAAATTCCTTCTGACACG
*
7813 ATAG-AAATATTT-AGCTAATGCTTAATAAATTTCTTGAAACCCT-AAAGATATGAAAGATACAT
66 ATAGAAAATATTTGA-CTAATACTTAATAAATTTCTTGAAA-CCTGAAAGATATGAAAGATACAT
* * * * * *
7875 GGGGTATCAGATTTCTTGTGATACAATAGAAAATATTTGACTAAAACC
129 AGAGTATCAGATTTCTTGTGACACAACAAAAAATATTTGACCAAAACC
* * * *
7923 TAATAAATTTCTTCGAACCCGAAAGATGTGACAGATACAT-GAGATATCA
1 TAATAAATTTCTTAGAACCTGAAAGATATGACAGATGCATAGAG-TATCA
7972 GATTTCTTTT
Statistics
Matches: 188, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
174 4 0.02
175 122 0.65
176 61 0.32
177 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (176 bp):
TAATAAATTTCTTAGAACCTGAAAGATATGACAGATGCATAGAGTATCAAATTCCTTCTGACACG
ATAGAAAATATTTGACTAATACTTAATAAATTTCTTGAAACCTGAAAGATATGAAAGATACATAG
AGTATCAGATTTCTTGTGACACAACAAAAAATATTTGACCAAAACC
Found at i:9294 original size:97 final size:98
Alignment explanation
Indices: 9089--9316 Score: 248
Period size: 97 Copynumber: 2.3 Consensus size: 98
9079 GCATCCTTTT
* * * * *
9089 GGAAGAATTAGGGTTAGAGTATCCCTAATGATGATGATTTAAACAAAATTAAGGTTTAAATCTTA
1 GGAAGAA-TAGGGTTAGAGTATCCCCAATGATGATAAATTAAACAAAATTAAGATTTAAATATTA
* * *
9154 ACATTTTTTTAAAAAAGGGGATTGGAGTATCTCCTC
65 ACA-TATTTTAAAAAA-GGGATTAGAGTATCACCTC
* ** *
9190 GGAAGAATAGGGTTGGAGTATCCCCAATGATGATAAATTAGGCAAAA-TAAGATTTAAATATTGA
1 GGAAGAATAGGGTTAGAGTATCCCCAATGATGATAAATTAAACAAAATTAAGATTTAAATATTAA
9254 CA-ATTTTAAAAATA-GGATTTAGAGTATCACCTC
66 CATATTTTAAAAA-AGGGA-TTAGAGTATCACCTC
* *
9287 GGAAGAAT-GGCGTTAAAGTATCTCCAATGA
1 GGAAGAATAGG-GTTAGAGTATCCCCAATGA
9317 AGGAAATTTT
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
96 5 0.05
97 46 0.42
98 1 0.01
99 16 0.15
100 34 0.31
101 7 0.06
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.30
Consensus pattern (98 bp):
GGAAGAATAGGGTTAGAGTATCCCCAATGATGATAAATTAAACAAAATTAAGATTTAAATATTAA
CATATTTTAAAAAAGGGATTAGAGTATCACCTC
Found at i:13395 original size:16 final size:16
Alignment explanation
Indices: 13376--13445 Score: 77
Period size: 16 Copynumber: 4.4 Consensus size: 16
13366 TGAGTTTAGG
* *
13376 TCATTTTAGGTTCGGC
1 TCATTTTGGGTTCGGA
*
13392 TCATTTCGGGTTCGGA
1 TCATTTTGGGTTCGGA
* * *
13408 TCATTTCGAGTTCGAA
1 TCATTTTGGGTTCGGA
*
13424 TCATTTTGGGTTCGGG
1 TCATTTTGGGTTCGGA
13440 TCATTT
1 TCATTT
13446 CGGATTTGGG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.14, C:0.17, G:0.26, T:0.43
Consensus pattern (16 bp):
TCATTTTGGGTTCGGA
Found at i:14564 original size:13 final size:13
Alignment explanation
Indices: 14548--14579 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14538 TCGATACATT
*
14548 ATACTTTGTATCG
1 ATACATTGTATCG
14561 ATACATTGTATCG
1 ATACATTGTATCG
14574 ATACAT
1 ATACAT
14580 GAACAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (13 bp):
ATACATTGTATCG
Found at i:16327 original size:3 final size:3
Alignment explanation
Indices: 16287--16311 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
16277 CATCAAAGAA
16287 GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT G
16312 TTGACTCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:22378 original size:33 final size:33
Alignment explanation
Indices: 22328--22392 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
22318 AATTGATCAC
*
22328 TTCACTTTCACACCGCATGGATGAGCACTTTAG
1 TTCACTTTCACACCGCATGGATGAGAACTTTAG
* *
22361 TTCACTTTCGCAGCGCATGGATGAGAACTTTA
1 TTCACTTTCACACCGCATGGATGAGAACTTTA
22393 TTTCTCTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (33 bp):
TTCACTTTCACACCGCATGGATGAGAACTTTAG
Found at i:23453 original size:13 final size:13
Alignment explanation
Indices: 23435--23459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23425 CATGGCACAT
23435 TGTATCGATACAA
1 TGTATCGATACAA
23448 TGTATCGATACA
1 TGTATCGATACA
23460 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:24282 original size:16 final size:16
Alignment explanation
Indices: 24243--24298 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
24233 TAATTGTTTG
*
24243 GGTCATTTCGGGTTCA
1 GGTCATTTCAGGTTCA
* * *
24259 GATTATTTTAGGTTCA
1 GGTCATTTCAGGTTCA
*
24275 GGTCATTTC-GAGTTCT
1 GGTCATTTCAG-GTTCA
24291 GGTCATTT
1 GGTCATTT
24299 TCGGGTTTAC
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
15 1 0.03
16 30 0.97
ACGTcount: A:0.16, C:0.14, G:0.25, T:0.45
Consensus pattern (16 bp):
GGTCATTTCAGGTTCA
Found at i:24997 original size:13 final size:13
Alignment explanation
Indices: 24979--25003 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24969 CATAAAATGT
24979 TGTATCGATACAA
1 TGTATCGATACAA
24992 TGTATCGATACA
1 TGTATCGATACA
25004 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:25001 original size:33 final size:33
Alignment explanation
Indices: 24959--25025 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
24949 TTCAACGATT
24959 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
24992 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
25025 T
1 T
25026 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:25085 original size:13 final size:13
Alignment explanation
Indices: 25067--25091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25057 ATTACTCACA
25067 TGTATCGATACAT
1 TGTATCGATACAT
25080 TGTATCGATACA
1 TGTATCGATACA
25092 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:25156 original size:52 final size:52
Alignment explanation
Indices: 25100--25224 Score: 216
Period size: 52 Copynumber: 2.4 Consensus size: 52
25090 CACTGATCTT
*
25100 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACA-TTTTATAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTA-AA
25152 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
25204 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
25225 CTTTTCATAT
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
52 66 0.94
53 4 0.06
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:29492 original size:12 final size:13
Alignment explanation
Indices: 29477--29505 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
29467 ATTAAGCATC
29477 AAAT-ATATTCAA
1 AAATCATATTCAA
29489 AAATCATATTCAA
1 AAATCATATTCAA
29502 AAAT
1 AAAT
29506 TAAAGAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATCATATTCAA
Found at i:33048 original size:61 final size:63
Alignment explanation
Indices: 32983--33141 Score: 157
Period size: 66 Copynumber: 2.5 Consensus size: 63
32973 AACTGACAAG
*
32983 TCAACAAAGGGTGACTAGGATAAAACCTAAGTT-AAGTG-TTGACAA-GGCGAAA-TCGATAAAA
1 TCAACAAAGGGTGACTAGGATAAAACCTAAGTTAAAG-GATTGACAAGGGC-AAAGTCAATAAAA
* * * * * *
33044 TCAACTAAGGGTGACCAGGGTGAAACTTAAGTTGGAAAAGGATTGACTAGGGCAAAGTCAATAAA
1 TCAACAAAGGGTGACTAGGATAAAACCTAAGTT---AAAGGATTGACAAGGGCAAAGTCAATAAA
*
33109 G
63 A
33110 TCAACTAAA-GGTGACTAGGATAAAACCTAAGT
1 TCAAC-AAAGGGTGACTAGGATAAAACCTAAGT
33142 AAAAAACAAG
Statistics
Matches: 77, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
61 28 0.36
64 1 0.01
65 12 0.16
66 34 0.44
67 2 0.03
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (63 bp):
TCAACAAAGGGTGACTAGGATAAAACCTAAGTTAAAGGATTGACAAGGGCAAAGTCAATAAAA
Found at i:33123 original size:66 final size:65
Alignment explanation
Indices: 33032--33246 Score: 209
Period size: 66 Copynumber: 3.3 Consensus size: 65
33022 TGACAAGGCG
* * * *
33032 AAATCGATAAAATCAACTAAGGGTGACCAGGGTGAAACTTAAGTTGGAAAAGGATTGACTAGGGC
1 AAATCAATAAAGTCAACTAAGGGTGACCAGGGTGAAACCTAAGTTGAAAAAGGATTGACTAGGGC
* * * * * **
33097 AAAGTCAATAAAGTCAACTAAAGGTGACTAGGATAAAACCTAAG-TAAAAAACAAGTTGACTAGG
1 AAA-TCAATAAAGTCAACTAAGGGTGACCAGGGTGAAACCTAAGTTGAAAAAGGA-TTGACTAGG
33161 GC
64 GC
** * * * *
33163 AAAATTGATAAAGTCCACTAAGGGTGACCAGGGCGAAACCTAAATTGAAAAAGGTTTGACTAAGG
1 -AAATCAATAAAGTCAACTAAGGGTGACCAGGGTGAAACCTAAGTTGAAAAAGGATTGACT-AGG
33228 TG-
64 -GC
*
33230 AAACCAATAAAGTCAAC
1 AAATCAATAAAGTCAAC
33247 AAGTTTAAGG
Statistics
Matches: 116, Mismatches: 28, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
65 9 0.08
66 94 0.81
67 12 0.10
68 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (65 bp):
AAATCAATAAAGTCAACTAAGGGTGACCAGGGTGAAACCTAAGTTGAAAAAGGATTGACTAGGGC
Found at i:33215 original size:132 final size:127
Alignment explanation
Indices: 32980--33248 Score: 319
Period size: 132 Copynumber: 2.1 Consensus size: 127
32970 TAAAACTGAC
* ** *
32980 AAGTCAACAAAGGGTGACTAGGATAAAACCTAAGTTAAGTGTTGACAAGGCGAAATCGATAAAAT
1 AAGTCAACAAAGGGTGACTAGGATAAAACCTAAGTAAAAAGTTGACAAGGCAAAATCGATAAAAT
* * * * *
33045 CAACTAAGGGTGACCAGGGTGAAACTTAAGTTGGAAAAGGATTGACT-AGG-GCAAAGTCAATA
66 CAACTAAGGGTGACCAGGGCGAAACCTAAATTGAAAAAGGATTGACTAAGGTG-AAA-CCAATA
* *
33107 AAGTCAACTAAA-GGTGACTAGGATAAAACCTAAGTAAAAAACAAGTTGACTAGGGCAAAATTGA
1 AAGTCAAC-AAAGGGTGACTAGGATAAAACCTAAGT---AAA-AAGTTGAC-AAGGCAAAATCGA
* * *
33171 TAAAGTCCACTAAGGGTGACCAGGGCGAAACCTAAATTGAAAAAGGTTTGACTAAGGTGAAACCA
60 TAAAATCAACTAAGGGTGACCAGGGCGAAACCTAAATTGAAAAAGGATTGACTAAGGTGAAACCA
33236 ATA
125 ATA
33239 AAGTCAACAA
1 AAGTCAACAA
33249 GTTTAAGGGG
Statistics
Matches: 120, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
127 31 0.26
128 3 0.03
130 2 0.02
131 8 0.07
132 69 0.57
133 6 0.05
134 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (127 bp):
AAGTCAACAAAGGGTGACTAGGATAAAACCTAAGTAAAAAGTTGACAAGGCAAAATCGATAAAAT
CAACTAAGGGTGACCAGGGCGAAACCTAAATTGAAAAAGGATTGACTAAGGTGAAACCAATA
Found at i:34543 original size:76 final size:76
Alignment explanation
Indices: 34111--34920 Score: 622
Period size: 76 Copynumber: 10.8 Consensus size: 76
34101 ATTGAAAAAG
* * * * * * * *
34111 AAGAACATGATTGGGAATATGTGGTTTCCATAATTTCCCATCAACAGCCGAAGCAAACTGATAAC
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTT-TCATCAACAGCCAAAACAAACTGATAAC
* * *
34176 AAGCTAAAGTAG
65 AAACTAAAGAAA
* * * * * ** *
34188 AAGATCATAATAGGGAATATGT-AATTCTACAATTTGAATCAATAGCCAAAACAAACTGATAACA
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
* *
34252 AGCTAAAGGAA
66 AACTAAAGAAA
* * * * * * * * * * *
34263 ATGAACCTAATGGGGAATATATGGTTTCTATAATTTTCCTCAACAACCAAAACAAACTAATAATA
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
***
34328 GGTTGAAAG-AA
66 AACT-AAAGAAA
* * * * *
34339 AGGAACATGATGGGGAATATGTGATTTCTATAATTTTCATCAACAGCCAAAATAAAACTGATAAT
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAA-CAAACTGATAAC
**** * *
34404 TGGTTGAAGGAA
65 AAACTAAAGAAA
* * * * * * * *
34416 AAGAGCATGATAGGGAACATGTGATTTCTAAAATTTTCATCAATAGTCGAAATAAATTGATAACG
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
34481 AACTAAAGAAA
66 AACTAAAGAAA
* * * * *
34492 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTCCCTCAACAGCCGAAACAAGCTCATAACA
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
*
34557 AACTGAAGAAA
66 AACTAAAGAAA
* * * * * *
34568 AAGAGTATGATGGAGCATATGTGATTTTTAAAATTTTCATTAACAGCCAAAACAAACTGACAACA
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
* *
34633 AATTGAAGAAA
66 AACTAAAGAAA
* * * * * *
34644 AAGAGTATGATAAGGG-ATATATGATTTCTAAAATTTTCATCAACAGTCGAAACAAACTAATAAC
1 AAGAGCATGAT-GGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAAC
34708 AAACTAAAGAAA
65 AAACTAAAGAAA
* * * * * *
34720 AAAAGTATGATGGGGCATATATGATTTTTAAAATTTTCATCAATAG-C----C---C--A-AACA
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
*
34774 AACTAAAAAAA
66 AACTAAAGAAA
* * * * * * *
34785 AAGAGTATGATGGGGAGTATGTGATTTCTAAAACTTTCATTAATAGCCAAAACAAATTGACAACA
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
*
34850 AACTGAAGAAA
66 AACTAAAGAAA
* ** * * * *
34861 AAGAGTATGATAAGGAATATGTGATTTCTAAATTTTTCATCAATAGTCGAAACAAACTGA
1 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGA
34921 AAAAAAAGTA
Statistics
Matches: 598, Mismatches: 118, Indels: 35
0.80 0.16 0.05
Matches are distributed among these distances:
65 53 0.09
66 2 0.00
68 1 0.00
70 1 0.00
71 1 0.00
75 55 0.09
76 400 0.67
77 85 0.14
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.26
Consensus pattern (76 bp):
AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTGATAACA
AACTAAAGAAA
Found at i:34721 original size:228 final size:223
Alignment explanation
Indices: 34199--34920 Score: 717
Period size: 229 Copynumber: 3.2 Consensus size: 223
34189 AGATCATAAT
* * ** * * * *
34199 AGGGAATATGT-AATTCTACAATTTGAATCAATAGCCAAAACAAACTGATAACAAGCTAAAGGAA
1 AGGG-ATATGTGATTTCTAAAATTTTCATCAATAGTCGAAACAAACTGATAACAAACTAAAGAAA
* * * * * * * * *
34263 ATGAACCTAATGGGGAATATATGGTTTCTATAATTTTCCTCAACAACCAAAACAAACTAATAATA
65 AAGAGCATGATGGGGAATATATGATTTCTA-AAATTTCCTCAAC-ACC-AAACAAGCTCATAACA
*** * ** * * *
34328 GGTTGAAAGAAAGGAACATGATGGGGAATATGTGATTTCTATAATTTTCATCAACAGCCAAAATA
127 AACTGAAA-AAAAGAGTATGAT-GGGAATATGTGATTTCTAAAATTTTCATTAACAGCCAAAA-C
* **** * *
34393 AAACTGATAATTGGTTGAAGGAAAAGAGCATGAT-
189 AAACTGACAACAAATTGAAGAAAAAGAGTATGATA
* * * *
34427 AGGGAACATGTGATTTCTAAAATTTTCATCAATAGTCGAAATAAATTGATAACGAACTAAAGAAA
1 AGGG-ATATGTGATTTCTAAAATTTTCATCAATAGTCGAAACAAACTGATAACAAACTAAAGAAA
*
34492 AAGAGCATGATGGGGAATATGTGATTTCTAAAATTTCCCTCAACAGCCGAAACAAGCTCATAACA
65 AAGAGCATGATGGGGAATATATGATTTCTAAAATTT-CCTCAACA-CC-AAACAAGCTCATAACA
* *
34557 AACTGAAGAAAAAGAGTATGATGGAGCATATGTGATTTTTAAAATTTTCATTAACAGCCAAAACA
127 AACTGAA-AAAAAGAGTATGATGG-GAATATGTGATTTCTAAAATTTTCATTAACAGCCAAAACA
34622 AACTGACAACAAATTGAAGAAAAAGAGTATGATA
190 AACTGACAACAAATTGAAGAAAAAGAGTATGATA
* * *
34656 AGGGATATATGATTTCTAAAATTTTCATCAACAGTCGAAACAAACTAATAACAAACTAAAGAAAA
1 AGGGATATGTGATTTCTAAAATTTTCATCAATAGTCGAAACAAACTGATAACAAACTAAAGAAAA
* * * * * * *
34721 AAAGTATGATGGGGCATATATGATTTTTAAAATTT--T---CATC-AA-TAGCCCA-AACAAACT
66 AGAGCATGATGGGGAATATATGATTTCTAAAATTTCCTCAACACCAAACAAGCTCATAACAAACT
* * * * *
34778 AAAAAAAAAGAGTATGATGGGGAGTATGTGATTTCTAAAACTTTCATTAATAGCCAAAACAAATT
131 -GAAAAAAAGAGTATGAT-GGGAATATGTGATTTCTAAAATTTTCATTAACAGCCAAAACAAACT
*
34843 GACAACAAACTGAAGAAAAAGAGTATGATA
194 GACAACAAATTGAAGAAAAAGAGTATGATA
* *
34873 AGGAATATGTGATTTCTAAATTTTTCATCAATAGTCGAAACAAACTGA
1 AGGGATATGTGATTTCTAAAATTTTCATCAATAGTCGAAACAAACTGA
34921 AAAAAAAGTA
Statistics
Matches: 417, Mismatches: 69, Indels: 27
0.81 0.13 0.05
Matches are distributed among these distances:
217 132 0.32
218 9 0.02
219 2 0.00
221 1 0.00
222 2 0.00
225 1 0.00
228 129 0.31
229 140 0.34
230 1 0.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (223 bp):
AGGGATATGTGATTTCTAAAATTTTCATCAATAGTCGAAACAAACTGATAACAAACTAAAGAAAA
AGAGCATGATGGGGAATATATGATTTCTAAAATTTCCTCAACACCAAACAAGCTCATAACAAACT
GAAAAAAAGAGTATGATGGGAATATGTGATTTCTAAAATTTTCATTAACAGCCAAAACAAACTGA
CAACAAATTGAAGAAAAAGAGTATGATA
Found at i:34780 original size:65 final size:65
Alignment explanation
Indices: 34705--34840 Score: 195
Period size: 65 Copynumber: 2.1 Consensus size: 65
34695 ACAAACTAAT
* *
34705 AACAAACTAAAGAAAAAA-AGTATGATGGGGCA-TATATGATTTTTAAAATTTTCATCAATAGCC
1 AACAAACTAAA-AAAAAAGAGTATGATGGGG-AGTATATGATTTCTAAAACTTTCATCAATAGCC
*
34768 CA
64 AA
* *
34770 AACAAACTAAAAAAAAAGAGTATGATGGGGAGTATGTGATTTCTAAAACTTTCATTAATAGCCAA
1 AACAAACTAAAAAAAAAGAGTATGATGGGGAGTATATGATTTCTAAAACTTTCATCAATAGCCAA
34835 AACAAA
1 AACAAA
34841 TTGACAACAA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
64 7 0.11
65 57 0.89
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.26
Consensus pattern (65 bp):
AACAAACTAAAAAAAAAGAGTATGATGGGGAGTATATGATTTCTAAAACTTTCATCAATAGCCAA
Found at i:34810 original size:141 final size:139
Alignment explanation
Indices: 34641--34981 Score: 398
Period size: 141 Copynumber: 2.4 Consensus size: 139
34631 CAAATTGAAG
* * * *
34641 AAAAAGAGTATGATAAGGGATATATGATTTCTAAAATTTTCATCAACAGTCGAAACAAACTAATA
1 AAAAAGAGTATGAT-AGGGATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTAACA
** * *
34706 ACAAACTAAAGAAAAAAAGTATGATGGGGCATATATGATTTTTAAAATTTTCATCAATAGCCCAA
65 ACAAACTAAAGAAAAAAAGTATGATAAGGAATATATGATTTCTAAAATTTTCATCAATAGCCCAA
34771 ACAAACTAAAA
130 ACAAACT-AAA
* * * * * *
34782 AAAAAGAGTATGATGGGGAGTATGTGATTTCTAAAACTTTCATTAATAGCCAAAACAAATTGACA
1 AAAAAGAGTATGATAGGGA-TATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTAACA
* * * * * *
34847 ACAAACTGAAGAAAAAGAGTATGATAAGGAATATGTGATTTCTAAATTTTTCATCAATAGTCGAA
65 ACAAACTAAAGAAAAAAAGTATGATAAGGAATATATGATTTCTAAAATTTTCATCAATAGCCCAA
*
34912 ACAAACTGAA
130 ACAAACTAAA
* * * *
34922 AAAAA-AGTATAATAAGGAATATGTGATTTCTAAAATTTTCATCTACATG-CAAAATAAACT
1 AAAAAGAGTATGAT-AGGGATATGTGATTTCTAAAATTTTCATCAACA-GCCAAAACAAACT
34982 GATAATAGGT
Statistics
Matches: 167, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
139 40 0.24
140 15 0.09
141 112 0.67
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (139 bp):
AAAAAGAGTATGATAGGGATATGTGATTTCTAAAATTTTCATCAACAGCCAAAACAAACTAACAA
CAAACTAAAGAAAAAAAGTATGATAAGGAATATATGATTTCTAAAATTTTCATCAATAGCCCAAA
CAAACTAAA
Found at i:35208 original size:110 final size:110
Alignment explanation
Indices: 34996--35208 Score: 270
Period size: 110 Copynumber: 1.9 Consensus size: 110
34986 ATAGGTGAAA
* *
34996 ATGACAATACTATAAGCTTACAAAATGGCTTAGGCAAAATCAAGACTCACAAAAAAGGCTCGACG
1 ATGACAATACTAGAAGCTTACAAAATGGCTTAGGCAAAACCAAGACTCACAAAAAAGGCTCGACG
* * *
35061 AACTAGAAACCTAAACGATGACTTGGGTGAATCCAAAATTGTAGG
66 AACTAGAAACCTAAACAATGACTTGGGTCAATACAAAATTGTAGG
* * * * *
35106 ATGATAATACTAGAAGCTTATAAAATGGCTTAGGCAAAACCAATACTTA-AAAAATA-GCATGGA
1 ATGACAATACTAGAAGCTTACAAAATGGCTTAGGCAAAACCAAGACTCACAAAAA-AGGC-TCGA
* *
35169 CGAAACTAGCAACCTTAACAATGACTTGGGTCAA-ACAAAA
64 CG-AACTAGAAACCTAAACAATGACTTGGGTCAATACAAAA
35209 ACTCAATTAA
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
109 7 0.08
110 54 0.61
111 27 0.31
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (110 bp):
ATGACAATACTAGAAGCTTACAAAATGGCTTAGGCAAAACCAAGACTCACAAAAAAGGCTCGACG
AACTAGAAACCTAAACAATGACTTGGGTCAATACAAAATTGTAGG
Found at i:35653 original size:20 final size:20
Alignment explanation
Indices: 35621--35658 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
35611 CAATGCAAAA
35621 ATTAGTAAAGAGGCAAATGC
1 ATTAGTAAAGAGGCAAATGC
35641 ATTAG-AAACGAGGCAAAT
1 ATTAGTAAA-GAGGCAAAT
35659 AACAATGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.47, C:0.11, G:0.24, T:0.18
Consensus pattern (20 bp):
ATTAGTAAAGAGGCAAATGC
Found at i:35689 original size:50 final size:50
Alignment explanation
Indices: 35611--35715 Score: 113
Period size: 50 Copynumber: 2.1 Consensus size: 50
35601 GAAACAATGG
* *
35611 CAATGCAAAAATTAGTAAAGAGGCAAATGCAT-TAGAAACGAGGCAAATAA
1 CAATGCAAAAATCAATAAAGAGGCAAATGCATATA-AAACGAGGCAAATAA
* * * * * * *
35661 CAATGCAAACATCAATAAAGTGGTAAATGTATATAAAATGATGCAAATAC
1 CAATGCAAAAATCAATAAAGAGGCAAATGCATATAAAACGAGGCAAATAA
35711 CAATG
1 CAATG
35716 TCATATAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
50 43 0.96
51 2 0.04
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.20
Consensus pattern (50 bp):
CAATGCAAAAATCAATAAAGAGGCAAATGCATATAAAACGAGGCAAATAA
Found at i:35827 original size:87 final size:87
Alignment explanation
Indices: 35657--35888 Score: 232
Period size: 87 Copynumber: 2.7 Consensus size: 87
35647 AACGAGGCAA
* * * * *
35657 ATAACAATGCAAACATCAATAAAGTGGTAAATGTATATAAAATGATGCAAATACCAATGTCATAT
1 ATAAAAATGCAAACATCAATAAAGTGGCAAATGTATATAAAATGATACAAACACCAAAGTCATAT
*
35722 AAAATGCAGATATACATGAACG
66 AAAATGCAAATATACATGAACG
* * * *
35744 ATAAAAATGCAAAGATCAATAAAGTGGCAAATGTACT-TGAAATGATACAAACACTAAAGTCATT
1 ATAAAAATGCAAACATCAATAAAGTGGCAAATGTA-TATAAAATGATACAAACACCAAAGTCATA
* * *
35808 TAAAATGCAAATGTGCATGAAATG
65 TAAAATGCAAATATACATG-AACG
** * * * * * * * *
35832 ATGCAACTACAAGCATCAATAAAGAGGCAAATGCATATGAAATGATATAAATACCAA
1 ATAAAAATGCAAACATCAATAAAGTGGCAAATGTATATAAAATGATACAAACACCAA
35889 TATCATCTAA
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
87 70 0.59
88 48 0.41
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.23
Consensus pattern (87 bp):
ATAAAAATGCAAACATCAATAAAGTGGCAAATGTATATAAAATGATACAAACACCAAAGTCATAT
AAAATGCAAATATACATGAACG
Found at i:35862 original size:44 final size:44
Alignment explanation
Indices: 35758--35966 Score: 126
Period size: 44 Copynumber: 4.8 Consensus size: 44
35748 AAATGCAAAG
* * *
35758 ATCAATAAAGTGGCAAATGTACTTGAAATGATACAAAC-ACTAA--
1 ATCAATAAAGAGGCAAATGTACATGAAATGATGC-AACTAC-AAGC
* * *
35801 AGTCATTTAAA-ATGCAAATGTGCATGAAATGATGCAACTACAAGC
1 A-TCA-ATAAAGAGGCAAATGTACATGAAATGATGCAACTACAAGC
* * ** * *
35846 ATCAATAAAGAGGCAAATGCATATGAAATGATATAAATACCAA-T
1 ATCAATAAAGAGGCAAATGTACATGAAATGATGCAACTA-CAAGC
* * * *** *
35890 ATCATCTAAAGTA--CAGATGTGCGCAAAATAATGCAACTACAAGC
1 ATCA-ATAAAG-AGGCAAATGTACATGAAATGATGCAACTACAAGC
*
35934 ATCAATAAAAAGGCAAATGTACATGAAATGATG
1 ATCAATAAAGAGGCAAATGTACATGAAATGATG
35967 TAAATGCCAA
Statistics
Matches: 118, Mismatches: 36, Indels: 23
0.67 0.20 0.13
Matches are distributed among these distances:
42 1 0.01
43 17 0.14
44 86 0.73
45 13 0.11
46 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.22
Consensus pattern (44 bp):
ATCAATAAAGAGGCAAATGTACATGAAATGATGCAACTACAAGC
Found at i:35876 original size:88 final size:88
Alignment explanation
Indices: 35670--35965 Score: 285
Period size: 88 Copynumber: 3.4 Consensus size: 88
35660 ACAATGCAAA
* * * * * *
35670 CATCAATAAAGTGGTAAATGTATATAAAATGATGCAAATACCAATGTCATATAAAATGCAGATAT
1 CATCAATAAAGAGGCAAATGTATATGAAATGATACAAATACCAAAGTCATATAAAATGCAGATGT
* * ** * *
35735 ACATG-AACGATAAAAATGCAAAG
66 GCATGAAATGATGCAACTAC-AAG
* * * * *
35758 -ATCAATAAAGTGGCAAATGTACT-TGAAATGATACAAACACTAAAGTCATTTAAAATGCAAATG
1 CATCAATAAAGAGGCAAATGTA-TATGAAATGATACAAATACCAAAGTCATATAAAATGCAGATG
35821 TGCATGAAATGATGCAACTACAAG
65 TGCATGAAATGATGCAACTACAAG
* * * * *
35845 CATCAATAAAGAGGCAAATGCATATGAAATGATATAAATACCAATA-TCATCTAAAGTACAGATG
1 CATCAATAAAGAGGCAAATGTATATGAAATGATACAAATACCAA-AGTCATATAAAATGCAGATG
*** *
35909 TGCGCAAAATAATGCAACTACAAG
65 TGCATGAAATGATGCAACTACAAG
* *
35933 CATCAATAAAAAGGCAAATGTACATGAAATGAT
1 CATCAATAAAGAGGCAAATGTATATGAAATGAT
35966 GTAAATGCCA
Statistics
Matches: 172, Mismatches: 31, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
87 61 0.35
88 110 0.64
89 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.15, T:0.23
Consensus pattern (88 bp):
CATCAATAAAGAGGCAAATGTATATGAAATGATACAAATACCAAAGTCATATAAAATGCAGATGT
GCATGAAATGATGCAACTACAAG
Found at i:36405 original size:29 final size:29
Alignment explanation
Indices: 36363--36426 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
36353 GCCTTTAGGT
*
36363 TAAAAACATGTTATGTTTAAGTATCTCAA
1 TAAAAACATGTTATGTTCAAGTATCTCAA
*
36392 TAAAAACATTTTATGTTCAAGTATCTCAA
1 TAAAAACATGTTATGTTCAAGTATCTCAA
*
36421 AAAAAA
1 TAAAAA
36427 TGATCTATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (29 bp):
TAAAAACATGTTATGTTCAAGTATCTCAA
Found at i:36755 original size:112 final size:112
Alignment explanation
Indices: 36639--36945 Score: 393
Period size: 112 Copynumber: 2.7 Consensus size: 112
36629 TACTGATAGA
* * * * * *
36639 ATACATGCCTTATTTTCTTAGGCACAAATGGATTAGGATGTATAAAACATGAATTTATTTGAAAC
1 ATACATGCCTTATTTTCTTAGGCACGAATGGATTAGGTTGTATGAAATATGAATTTCTTTGAAAA
*
36704 TCAGACAAATTTGATGTTATTAGCTCAAAAAAATT-AAAACCGATAAG
66 TCAGACAAATTTGATGTTATTAGCT-AAAAAAATTCAAAACCAATAAG
* * *
36751 ATACATGCCTTATTTTCTTTGGCAGGAATGGATCAGGTTGTATGAAATATGAATTTCTTTGAAAA
1 ATACATGCCTTATTTTCTTAGGCACGAATGGATTAGGTTGTATGAAATATGAATTTCTTTGAAAA
* * * *
36816 TGAGACAAATTTGATGTTATTAGCTTAAAAAATTCAAAACTAATAGG
66 TCAGACAAATTTGATGTTATTAGCTAAAAAAATTCAAAACCAATAAG
* * *
36863 ATACATGACC-CATTTTCCTAGGCATGAATGGATTAGGTTGTATGAAATATGAATTTCTTTGAAA
1 ATACATG-CCTTATTTTCTTAGGCACGAATGGATTAGGTTGTATGAAATATGAATTTCTTTGAAA
* * * *
36927 ACCAAATAAGTTTGATGTT
65 ATCAGACAAATTTGATGTT
36946 CTTCCAAGTC
Statistics
Matches: 169, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
111 8 0.05
112 159 0.94
113 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (112 bp):
ATACATGCCTTATTTTCTTAGGCACGAATGGATTAGGTTGTATGAAATATGAATTTCTTTGAAAA
TCAGACAAATTTGATGTTATTAGCTAAAAAAATTCAAAACCAATAAG
Found at i:38497 original size:2 final size:2
Alignment explanation
Indices: 38490--38516 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
38480 AATGCATGTA
38490 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
38517 CACAAATGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41617 original size:301 final size:302
Alignment explanation
Indices: 40968--41617 Score: 793
Period size: 300 Copynumber: 2.2 Consensus size: 302
40958 CAAACCTTTG
** *
40968 GCATAAAAGCATGC-CGATGACAACCTAAGACTCGATTTTAGAAAAATCCCCTCTAGTATAACTT
1 GCATAAAAGCAACCTCG-TGACAACCTAAGACTCGATTCTAGAAAAATCCCCTCTAGTATAACTT
41032 TAACATGAAAGTATCTCGATAACCCTAAAAGACTTTAAAATGATCTTAAATAGGATGAACATATC
65 TAACATGAAAGTATCTCGATAACCCTAAAAGACTTTAAAATGATCTTAAATAGGATGAACATATC
* * * *
41097 CTAAATGCTCACATTTGGCATAAAAGCATCTCAATGACAACCTAAGACTTGATTATAAAAAAATT
130 CTAAATGCTCACATTTGACATAAAAGCATCACAATGACAACCTAAAACTGGATTATAAAAAAATT
* * ** * *
41162 ACCAAAATATCCTTAGGATATACCTTCGATATGAAAGTATTTCGATAAACTTAAAGGACTTAAAA
195 ACCAAAATATCCTTAGGATATACCTTCGACATGAAAGCATCCCAATAAACTTAAAGGACATAAAA
* * **
41227 ATGATCATAAATAGGAAAAACCTATCCTAAATGTAGACATTTG
260 ATGATAATAAATAAGAAAAACCTATCCTAAATGTAGACATTCA
* * *
41270 GCATAAAAGCATCCTTGTGACAACCTAAGACTC-AGTTCTAGAAAAATCCCCTCTAGTATACCTT
1 GCATAAAAGCAACCTCGTGACAACCTAAGACTCGA-TTCTAGAAAAATCCCCTCTAGTATAACTT
* * *
41334 TAACATGAAAGTATCTCGGTAACCTTAAAAGAC-TTAAAATGATCTTAAATAGGATGAACCTATC
65 TAACATGAAAGTATCTCGATAACCCTAAAAGACTTTAAAATGATCTTAAATAGGATGAACATATC
* * * *
41398 CTAAATGCTCACTTTTGATATAAAAGCATCACAGTGACAACCTAAAACTGGATTAT-AAGAAATT
130 CTAAATGCTCACATTTGACATAAAAGCATCACAATGACAACCTAAAACTGGATTATAAAAAAATT
* * * *
41462 A-CAAAA-ATGCCTTTGGGGTATACTTTCGACATGAAAGCATCCCAATAACCTTAAAGGACATAA
195 ACCAAAATAT-CC-TTAGGATATACCTTCGACATGAAAGCATCCCAATAAACTTAAAGGACATAA
** *
41525 GGATGATAAGTAAA-AAGACAAAA-CTATCTTAAATGCATA-AC-TTCA
258 AAATGATAA-TAAATAAGA-AAAACCTATCCTAAATG--TAGACATTCA
* *
41570 GCATAAAAGCAACC-CGTTA-ATGACCTAGGACTCGATTCTAGGAAAAAT
1 GCATAAAAGCAACCTCGTGACA--ACCTAAGACTCGATTCTA-GAAAAAT
41618 TACTAAAATG
Statistics
Matches: 300, Mismatches: 36, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
298 3 0.01
299 10 0.03
300 99 0.33
301 98 0.33
302 89 0.30
303 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (302 bp):
GCATAAAAGCAACCTCGTGACAACCTAAGACTCGATTCTAGAAAAATCCCCTCTAGTATAACTTT
AACATGAAAGTATCTCGATAACCCTAAAAGACTTTAAAATGATCTTAAATAGGATGAACATATCC
TAAATGCTCACATTTGACATAAAAGCATCACAATGACAACCTAAAACTGGATTATAAAAAAATTA
CCAAAATATCCTTAGGATATACCTTCGACATGAAAGCATCCCAATAAACTTAAAGGACATAAAAA
TGATAATAAATAAGAAAAACCTATCCTAAATGTAGACATTCA
Found at i:42232 original size:30 final size:30
Alignment explanation
Indices: 42196--42258 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
42186 ATATAGTAGA
42196 AAATCATAAATAAACACCAAACACATCATG
1 AAATCATAAATAAACACCAAACACATCATG
* * *
42226 AAATCATAAATCAATACCAAAGACATCATG
1 AAATCATAAATAAACACCAAACACATCATG
42256 AAA
1 AAA
42259 AATCACGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.21, G:0.05, T:0.17
Consensus pattern (30 bp):
AAATCATAAATAAACACCAAACACATCATG
Found at i:45466 original size:19 final size:19
Alignment explanation
Indices: 45439--45494 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
45429 TGTATCGATA
* *
45439 CATTTTATCGATACATGTT
1 CATTGTATCGATACATGCT
*
45458 CATTGTATCGATACATACT
1 CATTGTATCGATACATGCT
45477 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
45495 AAAGTGGCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:50313 original size:13 final size:13
Alignment explanation
Indices: 50295--50320 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50285 CAATTTTTGG
50295 TGTATCGATACAT
1 TGTATCGATACAT
50308 TGTATCGATACAT
1 TGTATCGATACAT
50321 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:50332 original size:32 final size:33
Alignment explanation
Indices: 50275--50338 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
50265 TACAAGCCAA
**
50275 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
50308 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
50339 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:50345 original size:19 final size:18
Alignment explanation
Indices: 50275--50345 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
50265 TACAAGCCAA
50275 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
50295 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
50308 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
50327 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
50346 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:54496 original size:24 final size:22
Alignment explanation
Indices: 54450--54519 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
54440 ATCGAAAATT
* *
54450 AAAAATAAAATAATTTAAAAAA
1 AAAAATAAAAAAATTAAAAAAA
***
54472 AAATCCAAAAAAATTAAAAATAA
1 AAAAATAAAAAAATTAAAAA-AA
54495 AAGAAATAAAAAAATTAAAAAAA
1 AA-AAATAAAAAAATTAAAAAAA
54518 AA
1 AA
54520 CGTGAAAGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
22 15 0.39
23 8 0.21
24 15 0.39
ACGTcount: A:0.79, C:0.03, G:0.01, T:0.17
Consensus pattern (22 bp):
AAAAATAAAAAAATTAAAAAAA
Found at i:54519 original size:37 final size:37
Alignment explanation
Indices: 54444--54519 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
54434 GTAGAAATCG
* * **
54444 AAAATTAAAAATAAAATAATTTAAAAAAAAATCCAAA
1 AAAATTAAAAATAAAAGAATATAAAAAAAAATAAAAA
*
54481 AAAATTAAAAATAAAAGAA-AT-AAAAAAATTAAAAA
1 AAAATTAAAAATAAAAGAATATAAAAAAAAATAAAAA
54516 AAAA
1 AAAA
54520 CGTGAAAGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 15 0.44
36 1 0.03
37 18 0.53
ACGTcount: A:0.78, C:0.03, G:0.01, T:0.18
Consensus pattern (37 bp):
AAAATTAAAAATAAAAGAATATAAAAAAAAATAAAAA
Found at i:55416 original size:10 final size:11
Alignment explanation
Indices: 55393--55426 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
55383 GAATCGAGCT
55393 AAAAAGATGAAA
1 AAAAAGA-GAAA
*
55405 AAAAAAAGAAA
1 AAAAAGAGAAA
55416 AAAAAGAGAAA
1 AAAAAGAGAAA
55427 TCAGTAGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (11 bp):
AAAAAGAGAAA
Found at i:69741 original size:42 final size:42
Alignment explanation
Indices: 69680--75798 Score: 830
Period size: 42 Copynumber: 145.5 Consensus size: 42
69670 CCTTATCTAA
* * *
69680 AGTCTGCCTATTGGTTTTGACCTTGGAGACTTCTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * *
69722 AGTCTTCCTGTCGGCTTTGACCCTT-GAAACTACT-T-CATCTAA
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCTCTAC-CCT-T
* ** * * * * *
69764 AGTCTGCTTGTCAACCTTGACCATGGGGACTTTTTTTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGAC-TTCTCTACCCTT
* * * * **
69807 AGTCTGCCTGTCAGCTTTAACCTTGGAGACTAC-CTCATCCAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCT-ACCCTT
* * *
69849 AGTCTGCCTATCGGCTTTGACCCTGGAGACTT-TCCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * **
69892 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTGC-CT-CATTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * *
69932 AAAGTTTGCCTCTCGGCTTTAACCTT-GAAACCTT-TCTACCGTT
1 --AGTCTGCCTGTCGGCTTTGACCTTGGAGA-CTTCTCTACCCTT
* * * * * *
69975 AGTATGCCAGTCGACTTTGACCTTGGAGACTAC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* *
70017 AGTCTGCCTATCGGCTTTGACCTTGGAGACTTTTCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTA-CCCTT
* * * * * * *
70060 AGTCTGCTTGTCAGCTTTGACCCTAGAGACTAC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * * * *
70102 AGTCTGTCTGTCGACTTTGACCCTAGAGACTAC-CTTA--CTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCTT
* * * * *
70142 AAAGTCTGCCTATCGACTTTAACCCTGGAGACTTTTCTACCCTT
1 --AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * *
70186 AGTCTACTTGTCGGCTTTGACCTTGAAGACTGC-CATA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * *
70228 AGTCCGCCTGTCAGCTTTGACTTTGGAGACTT-TCTTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TA-CCCTT
* ** * * * * * *
70271 AGTCTGCCTATCAACTTTAACCCTGGAGTCTAC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* *
70313 AGTCTGCCTG-CTGGCTTTGACCCTAGAGACATTCT-TATCCCTT
1 AGTCTGCCTGTC-GGCTTTGACCTTGGAGAC-TTCTCTA-CCCTT
* * * * * * * * * *
70356 AGTTTGCTTGTCAGTTTTGGCCCTGGAGACTGCTTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCT-T
* * * *
70398 AGTCTACCTGTCGGCTTTGACCTTGGAGATTTTTCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTA-CCCTT
* * * * * *
70441 AGTCTGCCTGTTGGCTTTAACCCTAGAGA-TTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CTC-TACCCT-T
* * * * * * * * *
70483 AGTTTGCCTATTGACTTTTA-CTCTAGAGATTTTTCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCT-TGGAGACTTCTCTA-CCCTT
* * * * * *
70526 AGTTTGCCTGTCGGCTTTGACCCTAGAGACTAC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * *
70568 AGTCTACTTGTCGGCTTTGACCTTGGAGACTT-TCATATCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCTT
* * * * * *
70610 CAGTCTACCTCTCGGCTTTGACCCTAGAGA-TTGC-CT-CATCTAA
1 -AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CTCTAC-CCT-T
* * * * *
70653 AGTCTACCCGTTGGCTTTGACCTTGGAGGCTT-TCCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * * * * * * *
70696 AATCTACCTATCAGCTTTAACCCTAGAAACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* *
70738 AGTCTGCCTGTTGGCTTTGACCTTTGAGACTT-TCCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * * * *
70781 AGTCTGTCTATCGGCTTTGACCCTAGAGACTACTTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCT-T
* * * * * *
70823 AGTCTACTTGTTGGCTTTGACCCTGGAGACTTTTCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTA-CCCTT
* ** * * *
70866 AGTCTGCCTATCGATTTTGACCTTGGAGACTAC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* *
70908 AGTCTGCCTGTTGGCTTTGACCCTT-GCGACTT-TCGTATCCCTT
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCTC-TA-CCCTT
* ** * * * *
70951 A----GCCTG-C--C-TT-AAC-TAAAGTCTGC-CTTA-ACTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
** * * *
70983 AGTCTGCCTGTCGATTTTGACCCTAGAGACTT-TCCTATCCTTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * *
71026 AGTCTGCCTGTCGACTTTGACCCTAGAGACTGTCTC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
*** * * * *
71068 AGTCTATATGTCGACTTTGACCCTAGAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * *
71110 AGTCTGCTTGTCGGCTTTGACCCTAGAGACTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* *
71152 AGTCTGCCTGTTGGCTTTGACCTTGGAGACTT-TCCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * *
71195 AGTTTGCCTGTCGGCTTTGACCTTAGAGACTGCAT-TA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTC-TCTACCCT-T
* * * * * * ** *
71237 AGTCTACCTATCAGCTCTAACCCTATAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* ** * * *
71279 AATCTGCCTGTCAACTTTGACCTTGGAGACTAC-CTTA-TCTGA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * *
71321 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * *
71363 AGTCTACCTGTCGGCTTTGA-CTCTAGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCT-TGGAGACTTCTC-TACCCT-T
* * * * * *
71405 AGTCTACCAGTTGGCTCTAACATTGGAGACTT-TCCTACCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* **** * ** *
71448 AGTCTGTCTGTCGGCTTTGACCCAAAAGACTAC-CTAATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCT-T
* * * * *
71490 AGTCTGCCAGTTGGCTTTGACCCTAGAGACTT-TCCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
** * * *
71533 AGTCTGCCTGTCTACTTTCA-CTCTAGAGACTT-TCCTATCCTT
1 AGTCTGCCTGTCGGCTTTGACCT-TGGAGACTTCT-CTACCCTT
* * * * * *
71575 CAATCTACCTGTCGACTTTGACCTTGGAGACTGCT-T-CATCTAA
1 -AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * * * *
71618 AGTTTGCCTGTCGGCTTTGA-TTCTAGAGTCTT-TCCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCT-TGGAGACTTCT-CTA-CCCTT
* ** * * * * *
71661 A-ACTGTTTATCGGCTTTGACCTTAGAGACTAC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * *
71702 AGTATACCTGTCAGCTTTGACCTTGGAGACTT-T-T---C-T
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * ** * *
71738 A--C--CCT-TCGGTTTTGACCCTAGAGACAAC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * * * * * **
71775 AGTTTGCCTATTGACTTTAACCCTAAAGACTT-TCCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * *
71818 AGTCTGCCTATCGACTTTGACCTTAGAGACTGC-CTTA-CCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* ** * * * *
71860 AGTTTGTTTGTTGGCTTTGACCCTAGAGACTT-TCATATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TA-CCCTT
* * * * * * * *
71903 AATCCGCCTGTCGACTTTGACCCTAGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * *
71945 AGTCTGCATGTCGGCTTTGACCTTGGAGACTT-TCGAATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TA-CCCTT
* * * * *
71988 AGTCTGCCTGTCGACTTTGACCCT-AAGA-TTGCT-T-CTTCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CTCTAC-CCT-T
* * * * * *
72029 AGTCTACCCGTTGGCTTTGACCTTGGAGAGTT-TCCTATTCTTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * *
72072 AATCTACCTGTCAGCTTTGACCTTGGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * * *
72114 AGTCTGTCTGTCGGCTTCGACCTTTGGA-ACTTTTCTACTCTT
1 AGTCTGCCTGTCGGCTTTGACC-TTGGAGACTTCTCTACCCTT
* * * * *
72156 AGTCTGCCTGTAGGCTTTGACCTTGGAAACTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * * * * * *
72198 AGCCTGTCGGTCAGCTTTGA-CTTGTAGACTTTTCTACCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTA-CCCTT
* * * **
72240 AGTCTGCCTATCGGCTTTAATCC-TAGAGACTT-TCTTATCTTTT
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCTC-TA-CCCTT
* * * *
72283 AGTCTGCCTGTCGGCTTTGACCTTAGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * *
72325 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTA-CCCTT
** * * * * * **
72368 AGTCTATCTGTCAGTTTTGACCCTAGAGACTGCT-T-CATTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * *
72408 AAAGTCTGTCTGTTGGCTTTGACCTTTGAGACTT-TCCAATCCCTT
1 --AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * *
72453 AGTCTGCCTATCGACTTTGACCTTAGAGA-TTGTCTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * *
72495 AGTCTGTCTGTCAGCTTTGACCATGGAGACTT-TCCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * ** * * *
72538 AGTCTACATGTCAACTTTGAACCTTGGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTG-ACCTTGGAGACTTCTC-TACCCT-T
* * * * ** *
72581 AGTCTGCTTATCAGCTTTGACCCTACAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * ** * *
72623 AGTCTGCCTGCCGGTTTTAACCCTAAAGA-TTGGCT-TA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT--CTCTACCCT-T
* * * * *
72665 AGTCTGCATGTCGGCTTTAACCCTAGAGACTT-TCCCATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * **
72708 AGTCTACCTGTCGGCTTTGACCCTAGAGACTAC-CTTATCCAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCTT
* * * * *
72750 AATCTACTTGT-TGCTTTTGACC-TGGAGACTT-TCCTATCCCTC
1 AGTCTGCCTGTCGGC-TTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * *
72792 AGTCTGCTTGTCGGCTTTAACCCTAGG-GACTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCTCTAC-CCT-T
* * * * * *
72834 AGTCTGCATGTTGGGTTTGACCCTGGAG-CTTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CTCTAC-CCT-T
* * * * *
72876 AGTCT-CTCAGTCGGCTTTGACCTTGGAGAATGC-CTTA-TCTAA
1 AGTCTGC-CTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* *
72918 AGTCTGTCTCTCGGCTTTGACCTTGGAGACTT-TCCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * * *
72961 AGTCTCCCTATCGGTTTTGACCCTAGAGA-TTGCTC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CTCTACCCT-T
* * *
73002 AGTCAGTCTGTCGGCTTTGACCTTGGAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * * *
73044 AGTCTACCTGTTGACTTTGGCCTTGGAGACTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * * * * *
73086 AGTCTGCCTATTGGCTTTGACCCTAGTGACTT-TCATATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TA-CCCTT
* * * * *
73129 AGTCTACCTGTCGACTTTGACCTTGAAGACTATCTC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
** * * * * * *
73171 AGTCTGCCCATTGGTTTTGACCCTAGAGATTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * ** * *
73213 AGTTTGCCTGTCGGCTTTGATCTTGTTGA-TTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-CTC-TACCCT-T
* * * * * *
73255 AGTCTACCTATTGGCTCTGACCTTAGAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * *
73297 AGTCTGCTTGTCGACTTTGACCTTGGAGACTGCATC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTC-TCTACCCT-T
* * * * * **
73339 AGTCTGCCTGTCGACTTTGACCCTGGAGATTTTTTTACTTTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * *
73381 AGTCTACTTGTCAGCTTTGACCTT-GAGGACTAC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGA-GACTTCTCTAC-CCT-T
* * * *
73423 AGTCTACCTATCGGCTTTAATCC-TAGAG-CTT-TCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCTCTA-CCCTT
* * * ** * ** *
73464 AGTCTGTCTGTTGGCTTTGACCCTAAAGACTGC-CTTA-TATAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * * *
73506 AGTTTGCCTGTTGGCTTTGATAC-TGGAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCTCTACCCTT
* * * * * * ** *
73548 AGTTTGCCTATCGACTTTGACTTTAGAGACTGC-CTTA-TATAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* *
73590 AGTTTGCCTG-CTGGCTTTGACCTTGGAGACTTTTCTACCCTT
1 AGTCTGCCTGTC-GGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * ** * * *
73632 AGTCTGCCTGTCAGCTTTAACCCTAAAGACTAC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * * *
73674 AGTCTGCCTATTGGCTTTGACCCTGGAGACTT-TCCTATCCCTA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
** * * *
73717 AGTCTGCCTGTCAACTTTGACCTTGGAGACTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * *
73759 AGTCT-CTATGTTGGCTTTGACCTTGGAGACTATCTC-A--TTT
1 AGTCTGC-CTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCTT
* * * * * *
73799 AAAGTTTGCTTGTCGGCTATGACCTTGGAGACTGC-CT-CATCTAA
1 --AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * * * * * *
73843 AGTTTCCCTATCGGCTCTGACCTTAGAGA-TTTTCCTATCCTTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * *
73886 AGTCTCCCTGTAGGCTTTGACCCTAGAGACTGTCTC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
* * * * * * *
73928 AGTCTGCCTATCGGCTTAGACCCTAGAAACTTTTCTACCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * *
73970 AGTCTACCTGTCGACTTT-AGCCTTGGAGACTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCTCTAC-CCT-T
* * *
74012 AGTCT-ACTCGTTGGCTTTGACCTTGGAGACTT-TCTTATCCCTC
1 AGTCTGCCT-GTCGGCTTTGACCTTGGAGACTTCTC-TA-CCCTT
* * * * * * *
74055 AATTTGCCTGTCAGCTTTGACCATGGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
** * * * *
74097 AGTCTGCCCATCGGCTTCGACCTTGGGGATTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * *
74139 AGTCTGCTTGTAGGCTTTGACCTTGGAAACTATCTC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
* * * * *
74181 AGTCTGCCGGTCAGCTTTGACC-TGTAGACTTTTCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTA-CCCTT
* * **
74223 AGTCTGCCTGTCGACTTTAATCC-TGGAGACTT-TCCTGTCCTT
1 AGTCTGCCTGTCGGCTTTGA-CCTTGGAGACTTCT-CTACCCTT
* * * *
74265 CAGTCTGCGTGTCGGCTTTGACCTTGGAGACTGT-TTTA-TCTAA
1 -AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
* * *
74308 AGTCTGCCTATCGGCTTTGACCCTGGAGACTT-TCCTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * **
74351 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTGC-CT-CATTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * *
74391 AAAGTCTGTCTGTTGGCTTTGACCTTTGAGACTT-TCCAATCCCTT
1 --AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * * *
74436 AGTTTGCCTATCGACTTTGACTTTGTAGACTGTCT-TA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
* * * *
74478 AGTCTGTCTGTCGACTTTGACCATGGAAACTT-TCCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * *
74521 AGTCTGCTTATCAGCTTTGACCATGGAGACTTTTCTATCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * * *
74563 AGTGTACCTATCGGCTTTGACCTTCGAGACTAC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * * *
74605 AGTCTGCCTATCGGCTTTGACCTTGTAGATTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * * * ** * * *
74647 AGTCCGTCTGCCAGCTTTAACCCTAGAGACTAGTTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCT-T
* * * *
74689 AGTCTGCCTATCGGCTTTAACCCTAGAGACTT-TCCTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* ** * * *
74732 AGTCTACCTGTCGGCTTTGA-CTCTAAAGACTGC-CTGA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCT-TGGAGACTTCTCT-ACCCT-T
* * * * * * * *
74774 AATCTGCTTATTGGTTTTGACCCT-GAGA-TTTTCTTATCCCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TA-CCCTT
* * * * * *
74816 AGTCTACTTGTCGGCTTTAACCCTAGAGA-TTGCCTCATA---TAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT--CTC-TACCCT-T
* * * * * *
74858 AGTCTGCATGTTGGGTTTGACCTTGGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * *
74900 AGTCT-CCTTGTCGG-TTTAACCTTGGAGA-TTAC-CT-CATCTAA
1 AGTCTGCC-TGTCGGCTTTGACCTTGGAGACTT-CTCTAC-CCT-T
74941 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTT-TCTTATCCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TA-CCCTT
* * * * * * *
74984 AGTCTTCCTATCGGCTTTGACCCTAGAGACTGCT-TA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCT-T
* *
75025 AGTCTTCCTGTCGGCTTTGACCTTGGAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * * * * *
75067 AGTCTACTTGTTGACTTTGGCCTTAGAGACTAC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * * * * *
75109 AGTTTGCCTATTGGCTTTGACCTTAGAGACTT-TCCTATCGCTC
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
* * * * * *
75152 AGTCTGCTTGTC-G---AGACTTTGGAGACTGC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * ** *
75190 AGTTTGCCTGTCGGTTTTGACCTTAAAGACTTTTCTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * *
75232 AGTTTGCGTGTCGGCTTTGACCTTAGAGACTGTCT-TA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
* * * *
75274 AGTCTGCCTGTTGGCTCTGACCTTGGAGACTTTTCTATCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * * *
75316 AGTCTGCTTGTCGGCTTTGGCATTGAAGACTACATC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTC-TCTACCCT-T
* * * * * * *
75358 AGTCTGCCTGTTGACTTTGACCCTGGAGATTTTTTTTACTCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGA-CTTCTCTACCCTT
* * * * * * * *
75401 AGTCTACCTGTCGGCTGTGACCCTAGAGGCTGC-CT-CATCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTAC-CCT-T
* * * * *
75443 AGTCTGCCTATTGGCTTTGACCCTGGAGACTTTTTTACCCTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * *
75485 AGTCTGCCTATCGACTTTGACCATGGAGACTAC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
* * * * *
75527 AG--T-CCTATCGGCTTTAACCTTGGAGACTTTTCAACCTTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * * * * **
75566 AGTCTGCTTATCGGCTTTGACCCTAGAGACTGCT-T-CTTTT
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
* * *
75606 AAAGTCTGCCTGTTGGCTTTAACAC-TGGAGACTT-TCCTATCCCTC
1 --AGTCTGCCTGTCGGCTTTGAC-CTTGGAGACTTCT-CTA-CCCTT
* ** * * * * *
75651 AATCTGCCTGTCGATTTTGACCCTAGAAACTGTCTC-A-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACT-TCTCTACCCT-T
* * * * * * * * *
75693 AGTCTACCTATCAGCTTTGACCCTAGATACTAC-CTTA-TCTAA
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTC-TACCCT-T
*
75735 AGTCTGCCTGTTGGCTTTGACCTTGGAGACTT-TCCTATCCC-T
1 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT-CTA-CCCTT
*
75777 AGTGTGCCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACC
75799 AGGGAGAATT
Statistics
Matches: 4303, Mismatches: 1293, Indels: 962
0.66 0.20 0.15
Matches are distributed among these distances:
31 18 0.00
32 5 0.00
33 8 0.00
34 1 0.00
35 3 0.00
36 7 0.00
37 4 0.00
38 12 0.00
39 45 0.01
40 54 0.01
41 367 0.09
42 2439 0.57
43 1199 0.28
44 110 0.03
45 31 0.01
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (42 bp):
AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTCTACCCTT
Found at i:69845 original size:85 final size:83
Alignment explanation
Indices: 69625--70132 Score: 484
Period size: 85 Copynumber: 6.0 Consensus size: 83
69615 GACCATATGA
* * * * * *
69625 ACTTTTCTA--CTTCAGTCTGCCTATCGGCTTTGACCCTAAAGACTGCCTTATCTAAAGTCTGCC
1 ACTTTTCTACCCTT-AGTCTGCCTGTCAGCTTTGACCTTAGAGACTACCTCATCTAAAGTCTGCC
* *
69688 TATTGGTTTTGACCTTGGAG
65 TATCGGCTTTGACC-TGGAG
* * * * * *
69708 ACTTCTCTACCCTTAGTCTTCCTGTCGGCTTTGACCCTT-GAAACTACTTCATCTAAAGTCTGCT
1 ACTTTTCTACCCTTAGTCTGCCTGTCAGCTTTGA-CCTTAGAGACTACCTCATCTAAAGTCTGCC
* ** * *
69772 TGTCAACCTTGACCATGGGG
65 TATCGGCTTTGACC-TGGAG
* * * *
69792 ACTTTTTTTACCCTTAGTCTGCCTGTCAGCTTTAACCTTGGAGACTACCTCATCCAAAGTCTGCC
1 AC-TTTTCTACCCTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTACCTCATCTAAAGTCTGCC
69857 TATCGGCTTTGACCCTGGAG
65 TATCGGCTTTGA-CCTGGAG
* * * * * * *
69877 ACTTTCCTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATTTAAAGTTTGCC
1 ACTTTTCTA-CCCTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTACCTCATCTAAAGTCTGCC
* * * *
69942 TCTCGGCTTTAACCTTGAA
65 TATCGGCTTTGACCTGGAG
* * * * *
69961 ACCTTTCTACCGTTAGTATGCCAGTC-GACTTTGACCTTGGAGACTACCTCATCTAAAGTCTGCC
1 ACTTTTCTACCCTTAGTCTGCCTGTCAG-CTTTGACCTTAGAGACTACCTCATCTAAAGTCTGCC
70025 TATCGGCTTTGACCTTGGAG
65 TATCGGCTTTGACC-TGGAG
* * *
70045 ACTTTTCTATCCCTTAGTCTGCTTGTCAGCTTTGACCCTAGAGACTACCTCATCTAAAGTCTGTC
1 ACTTTTCTA-CCCTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTACCTCATCTAAAGTCTGCC
* * *
70110 TGTCGACTTTGACCCTAGAG
65 TATCGGCTTTGA-CCTGGAG
70130 ACT
1 ACT
70133 ACCTTACTTA
Statistics
Matches: 340, Mismatches: 73, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
82 1 0.00
83 64 0.19
84 83 0.24
85 187 0.55
86 5 0.01
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (83 bp):
ACTTTTCTACCCTTAGTCTGCCTGTCAGCTTTGACCTTAGAGACTACCTCATCTAAAGTCTGCCT
ATCGGCTTTGACCTGGAG
Found at i:70066 original size:211 final size:210
Alignment explanation
Indices: 69807--70342 Score: 598
Period size: 211 Copynumber: 2.5 Consensus size: 210
69797 TTTTACCCTT
* * * ** * ** *
69807 AGTCTGCCTGTCAGCTTTAACCTTGGAGACTACCTCAT-CCAAAGTCTGCCTATCGGCTTTGACC
1 AGTCCGCCTATCAGCTTTGACCTTGGAGACTTTCTTATCCCTTAGTCTGCCTATCAGCTTTGACC
* * * *
69871 CTGGAGACTTTCCTATCCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATTTAAA
66 CTGGAGAC-TACCTAT--CTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTCACTTAAA
* * * * * *
69935 GTTTGCCTCTCGGCTTTAA-CCTTGAAACCTTTCTACCGTTAGTATGCCAGTCGACTTTGACCTT
128 GTCTGCCTATCGACTTTAACCCTGGAAACCTTTCTACCCTTAGTATACCAGTCGACTTTGACCTT
*
69999 GGAGACTACC-TCATCTAA
193 GAAGACTACCAT-ATCTAA
* * * *
70017 AGTCTGCCTATCGGCTTTGACCTTGGAGACTTT-TCTATCCCTTAGTCTGCTTGTCAGCTTTGAC
1 AGTCCGCCTATCAGCTTTGACCTTGGAGACTTTCT-TATCCCTTAGTCTGCCTATCAGCTTTGAC
* * * *
70081 CCTAGAGACTACCTCATCTAAAGTCTGTCTGTCGACTTTGACCCTAGAGACTACCTTACTTAAAG
65 CCTGGAGACTACCT-ATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTCACTTAAAG
* * * ** *
70146 TCTGCCTATCGACTTTAACCCTGGAGACTTTTCTACCCTTAGTCTACTTGTCGGCTTTGACCTTG
129 TCTGCCTATCGACTTTAACCCTGGAAACCTTTCTACCCTTAGTATACCAGTCGACTTTGACCTTG
*
70211 AAGACTGCCATATCTAA
194 AAGACTACCATATCTAA
* * * *
70228 AGTCCGCCTGTCAGCTTTGACTTTGGAGACTTTCTTATCCCTTAGTCTGCCTATCAACTTTAACC
1 AGTCCGCCTATCAGCTTTGACCTTGGAGACTTTCTTATCCCTTAGTCTGCCTATCAGCTTTGACC
*
70293 CTGGAGTCTACCTTATCTAAAGTCTGCCTG-CTGGCTTTGACCCTAGAGAC
66 CTGGAGACTACC-TATCTAAAGTCTGCCTGTC-GGCTTTGACCCTAGAGAC
70343 ATTCTTATCC
Statistics
Matches: 272, Mismatches: 45, Indels: 17
0.81 0.13 0.05
Matches are distributed among these distances:
209 3 0.01
210 89 0.33
211 177 0.65
212 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (210 bp):
AGTCCGCCTATCAGCTTTGACCTTGGAGACTTTCTTATCCCTTAGTCTGCCTATCAGCTTTGACC
CTGGAGACTACCTATCTAAAGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTCACTTAAAGTC
TGCCTATCGACTTTAACCCTGGAAACCTTTCTACCCTTAGTATACCAGTCGACTTTGACCTTGAA
GACTACCATATCTAA
Found at i:70312 original size:85 final size:85
Alignment explanation
Indices: 70060--75798 Score: 3064
Period size: 85 Copynumber: 68.3 Consensus size: 85
70050 TCTATCCCTT
* * ** * * * *
70060 AGTCTGCTTGTCAGCTTTGACCCTAGAGACTACCTCAT--CTAAAGTCTGTCTGTCGACTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
*
70123 CCTAGAGACTACCTTA-CTTAA
65 CCTAGAGACTGCCTTATC-TAA
* * * * * *
70144 AGTCTGCCTATCGACTTTAACCCTGGAGACTTT-TCTA-CCCTTAGTCTACTTGTCGGCTTTGA-
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* *
70206 CCTTGAAGACTGCCATATCTAA
65 CCTAG-AGACTGCCTTATCTAA
* * ** * * ** *
70228 AGTCCGCCTGTCAGCTTTGACTTTGGAGACTTTCTTATCCCTTAGTCTGCCTATCAACTTTAACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
70293 CTGGAGTCTACCTTATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * *
70313 AGTCTGCCTG-CTGGCTTTGACCCTAGAGACATTCTTATCCCTTAGTTTGCTTGTCAGTTTTGGC
1 AGTCTGCCTGTC-GGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* *
70377 CCTGGAGACTGCTTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * *
70398 AGTCTACCTGTCGGCTTTGACCTTGGAGA-TTTTTCTATCCCTCAGTCTGCCTGTTGGCTTTAAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
*
70462 CCTAGAGATTGCCTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * * * *
70483 AGTTTGCCTATTGACTTTTACTCTAGAGA-TTTTTCTATCCCTCAGTTTGCCTGTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* *
70547 CCTAGAGACTACCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * *
70568 AGTCTACTTGTCGGCTTTGACCTTGGAGACTTTCATAT-CCTTCAGTCTACCTCTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTT-AGTCTGCCTGTCGGCTTTGAC
* *
70632 CCTAGAGATTGCCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * * * * * * * *
70653 AGTCTACCCGTTGGCTTTGACCTTGGAGGCTTTCCTATCCCTCAATCTACCTATCAGCTTTAACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
*
70718 CTAGAAACTGCCTTATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * *
70738 AGTCTGCCTGTTGGCTTTGACCTTTGAGACTTTCCTATCCCTTAGTCTGTCTATCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
70803 CTAGAGACTACTTTATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * **
70823 AGTCTACTTGTTGGCTTTGACCCTGGAGACTTT-TCTATCCCTCAGTCTGCCTATCGATTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * * *
70887 CTTGGAGACTACCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * *
70908 AGTCTGCCTGTTGGCTTTGACCCTTGCGACTTTCGTATCCCTTA----GCCTG-C--C-TT-A-A
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
70963 CTAAAGTCTGCCTTAACTAA
66 CTAGAGACTGCCTTATCTAA
** * * *
70983 AGTCTGCCTGTCGATTTTGACCCTAGAGACTTTCCTATCCTTTAGTCTGCCTGTCGACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
71048 CTAGAGACTGTCTCATCTAA
66 CTAGAGACTGCCTTATCTAA
*** * *
71068 AGTCTATATGTCGACTTTGACCCTAGAGACTTT-TCTA-CCCTTAGTCTGCTTGTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
*
71131 CCTAGAGACTGCCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * *
71152 AGTCTGCCTGTTGGCTTTGACCTTGGAGACTTTCCTATCCCTCAGTTTGCCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
71217 TTAGAGACTGCATTATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * **
71237 AGTCTACCTATCAGCTCTAACCCTATAGACTTT-TCTA-CCCTTAATCTGCCTGTCAACTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * * *
71300 CTTGGAGACTACCTTATCTGA
65 CCTAGAGACTGCCTTATCTAA
*
71321 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTT-TCTA-CCCTTAGTCTACCTGTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
*
71384 TCTAGAGACTGCCTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * ** * * * *
71405 AGTCTACCAGTTGGCTCTAACATTGGAGACTTTCCTACCCCTTAGTCTGTCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * * *
71470 CAAAAGACTACCTAATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * ** * *
71490 AGTCTGCCAGTTGGCTTTGACCCTAGAGACTTTCCTATCCCTCAGTCTGCCTGTCTACTTTCACT
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
71555 CTAGAGACTTTCC-TATCCTTCA
66 CTAGAGAC-TGCCTTAT-C-TAA
* * * * * * *
71577 A-TCTACCTGTCGACTTTGACCTTGGAGAC-TGCTTCAT--CTAAAGTTTGCCTGTCGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTT-ATCCCT-TAGTCTGCCTGTCGGCTTTGA
** * * *
71638 TTCTAGAGTCTTTCC-TATCCCTCA
64 CCCTAGAGAC-TGCCTTAT--CTAA
** * * ** * * * *
71662 A--CTGTTTATCGGCTTTGACCTTAGAGACTACCTTAT--CTAAAGTATACCTGTCAGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
* *
71723 CTTGGAGACT---TT-TCT--
65 CCTAGAGACTGCCTTATCTAA
* *** * * * * * *
71738 A--C--CCT-TCGGTTTTGACCCTAGAGACAACCTTAT--CTAAAGTTTGCCTATTGACTTTAAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
* * *
71796 CCTAAAGACTTTCC-TATCCCT-T
65 CCTAGAGAC-TGCCTTAT--CTAA
* * * ** * * ** *
71818 AGTCTGCCTATCGACTTTGACCTTAGAGACTGCCTTA--CCTAAAGTTTGTTTGTTGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
** * *
71881 CCTAGAGACTTTCATATCCCTCA
65 CCTAGAGACTGCCTTAT--CTAA
* * ** * *
71904 A-TCCGCCTGTCGACTTTGACCCTAGAGACTGCCTTAT--CTAAAGTCTGCATGTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
* * ** ** *
71966 CTTGGAGACTTTCGAATCCCT-C
65 CCTAGAGACTGCCTTAT--CTAA
* * * * * * * *
71988 AGTCTGCCTGTCGACTTTGACCCTA-AGA-TTGCTTCT-TCTAAAGTCTACCCGTTGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
* * * * *
72050 CTTGGAGAGTTTCC-TATTCTTTA
65 CCTAGAGA-CTGCCTTA-TC-TAA
* * * * ** * * *
72073 A-TCTACCTGTCAGCTTTGACCTTGGAGACTGCCTTAT--CTAAAGTCTGTCTGTCGGCTTCGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
* * ** *
72135 CTTTG-GAACT-TTTCTACTCT-T
65 CCTAGAG-ACTGCCT-TA-TCTAA
* * * * ** * * * * * *
72156 AGTCTGCCTGTAGGCTTTGACCTTGGAAACTGCCTCAT--CTAAAGCCTGTCGGTCAGCTTTGA-
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
* ** * *
72218 -CTTGTAGACT-TTTCTACCCCT-C
65 CCTAG-AGACTGCCT-TA--TCTAA
* * * **
72240 AGTCTGCCTATCGGCTTTAATCCTAGAGACTTTCTTATCTTTTAGTCTGCCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
*
72305 TTAGAGACTGCCTTATCTAA
66 CTAGAGACTGCCTTATCTAA
** * *
72325 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTT-TCTATCCCTTAGTCTATCTGTCAGTTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
*
72389 CCTAGAGACTG-CTTCATTTAA
65 CCTAGAGACTGCCTT-ATCTAA
* * * * ** * *
72410 AGTCTGTCTGTTGGCTTTGACCTTTGAGACTTTCCAATCCCTTAGTCTGCCTATCGACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
72475 TTAGAGATTGTCTTATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * **
72495 AGTCTGTCTGTCAGCTTTGACCATGGAGACTTTCCTATCCCTTAGTCTACATGTCAACTTTGAAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTG-AC
* *
72560 CTTGGAGACTGCCTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * *
72581 AGTCTGCTTATCAGCTTTGACCCTACAGACTTT-TCTA-CCCTTAGTCTGCCTGCCGGTTTTAAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
72644 CCTAAAGATTGGCTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * ** *
72665 AGTCTGCATGTCGGCTTTAACCCTAGAGACTTTCCCATCCCTTAGTCTACCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
72730 CTAGAGACTACCTTATCCAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * * *
72750 AATCTACTTGT-TGCTTTTGA-CCTGGAGACTTTCCTATCCCTCAGTCTGCTTGTCGGCTTTAAC
1 AGTCTGCCTGTCGGC-TTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* *
72813 CCTAGGGACTGCCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * * *
72834 AGTCTGCATGTTGGGTTTGACCCTGGAG-CTTGCCTCAT--CTAAAGTCT-CTCAGTCGGCTTTG
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TCTTATCCCT-TAGTCTGC-CTGTCGGCTTTG
* * *
72895 ACCTTGGAGAATGCCTTATCTAA
63 ACCCTAGAGACTGCCTTATCTAA
* * * * * * * *
72918 AGTCTGTCTCTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTCTCCCTATCGGTTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
72983 CTAGAGATTG-CTCATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * *
73002 AGTCAGTCTGTCGGCTTTGACCTTGGAGACTTT-TCTA-CCCTTAGTCTACCTGTTGACTTTGGC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
73065 CTTGGAGACTGCCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * *
73086 AGTCTGCCTATTGGCTTTGACCCTAGTGACTTTCATATCCCTCAGTCTACCTGTCGACTTTGA-C
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* ** *
73150 CTTGAAGACTATCTCATCTAA
66 CTAG-AGACTGCCTTATCTAA
** * * * *
73171 AGTCTGCCCATTGGTTTTGACCCTAGAGA-TTT-TTCTACCCTTAGTTTGCCTGTCGGCTTTGA-
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTAT-CCCTTAGTCTGCCTGTCGGCTTTGAC
* * * *
73233 TCTTGTTGATTGCCTTATCTAA
65 CCTAG-AGACTGCCTTATCTAA
* * * * * * *
73255 AGTCTACCTATTGGCTCTGACCTTAGAGACTTT-TCTA-CCCTTAGTCTGCTTGTCGACTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * * *
73318 CTTGGAGACTGCATCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * ** * * *
73339 AGTCTGCCTGTCGACTTTGACCCTGGAGATTTTTTTA-CTTTTAGTCTACTTGTCAGCTTTGA-C
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
73402 CTTGAGGACTACCTCATCTAA
66 CTAGA-GACTGCCTTATCTAA
* * * * * *
73423 AGTCTACCTATCGGCTTTAATCCTAGAG-CTTTC-TATCCCTTAGTCTGTCTGTTGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
73486 CTAAAGACTGCCTTATATAA
66 CTAGAGACTGCCTTATCTAA
* * ** * * * *
73506 AGTTTGCCTGTTGGCTTTGATACTGGAGACTTT-TCTA-CCCTTAGTTTGCCTATCGACTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
** *
73569 TTTAGAGACTGCCTTATATAA
65 CCTAGAGACTGCCTTATCTAA
* * * * *
73590 AGTTTGCCTG-CTGGCTTTGACCTTGGAGACTTT-TCTA-CCCTTAGTCTGCCTGTCAGCTTTAA
1 AGTCTGCCTGTC-GGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGA
* *
73652 CCCTAAAGACTACCTTATCTAA
64 CCCTAGAGACTGCCTTATCTAA
* * * * * **
73674 AGTCTGCCTATTGGCTTTGACCCTGGAGACTTTCCTATCCCTAAGTCTGCCTGTCAACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
73739 TTGGAGACTGCCTCATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * * *
73759 AGTCT-CTATGTTGGCTTTGACCTTGGAGACTATCTCAT---TTAAAGTTTGCTTGTCGGCTATG
1 AGTCTGC-CTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTT--AGTCTGCCTGTCGGCTTTG
* * *
73820 ACCTTGGAGACTGCCTCATCTAA
63 ACCCTAGAGACTGCCTTATCTAA
* * * * * * * * * *
73843 AGTTTCCCTATCGGCTCTGACCTTAGAGATTTTCCTATCCTTTAGTCTCCCTGTAGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
73908 CTAGAGACTGTCTCATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * *
73928 AGTCTGCCTATCGGCTTAGACCCTAGAAACTTT-TCTA-CCCTCAGTCTACCTGTCGACTTT-AG
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGA-
* * *
73990 CCTTGGAGACTGCCTCATCTAA
64 CCCTAGAGACTGCCTTATCTAA
* * * * * * * *
74012 AGTCT-ACTCGTTGGCTTTGACCTTGGAGACTTTCTTATCCCTCAATTTGCCTGTCAGCTTTGAC
1 AGTCTGCCT-GTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* *
74076 CATGGAGACTGCCTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
** * * * * * * *
74097 AGTCTGCCCATCGGCTTCGACCTTGGGGA-TTT-TTCTACCCTTAGTCTGCTTGTAGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTAT-CCCTTAGTCTGCCTGTCGGCTTTGAC
* * * ** *
74160 CTTGGAAACTATCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * *
74181 AGTCTGCCGGTCAGCTTTGA-CCT-GTAGACTTT-TCTATCCCTCAGTCTGCCTGTCGACTTTAA
1 AGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGA
* * * * **
74243 TCCTGGAGACTTTCCTGT-CCTTC
64 CCCTAGAGAC-TGCCT-TATCTAA
* * * * *
74266 AGTCTGCGTGTCGGCTTTGACCTTGGAGACTGTT-TTAT--CTAAAGTCTGCCTATCGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACT-TTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGA
* * *
74328 CCCTGGAGACTTTCC-TATCCCT-C
64 CCCTAGAGAC-TGCCTTAT--CTAA
** * * *
74351 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCAT---TTAAAGTCTGTCTGTTGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * *
74413 CCTTTGAGACTTTCC-AATCCCT-T
64 CCCTAGAGAC-TGCCTTAT--CTAA
* * * * * * * * *
74436 AGTTTGCCTATCGACTTTGA-CTTTGTAGACTGTCTTAT--CTAAAGTCTGTCTGTCGACTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGA
* * * * *
74498 CCATGGAAACTTTCC-TATCCCT-T
64 CCCTAGAGAC-TGCCTTAT--CTAA
* * * * * * * *
74521 AGTCTGCTTATCAGCTTTGACCATGGAGACTTT-TCTAT-CCTTAGTGTACCTATCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
74584 CTTCGAGACTACCTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * * *
74605 AGTCTGCCTATCGGCTTTGA-CCTTGTAGA-TTT-TTCTACCCTTAGTCCGTCTGCCAGCTTTAA
1 AGTCTGCCTGTCGGCTTTGACCCTAG-AGACTTTCTTAT-CCCTTAGTCTGCCTGTCGGCTTTGA
*
74667 CCCTAGAGACTAG-TTTATCTAA
64 CCCTAGAGACT-GCCTTATCTAA
* * * * *
74689 AGTCTGCCTATCGGCTTTAACCCTAGAGACTTTCCTATCCCTTAGTCTACCTGTCGGCTTTGACT
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
74754 CTAAAGACTGCCTGATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * * * *
74774 AATCTGCTTATTGGTTTTGACCCT-GAGATTTTCTTATCCCTCAGTCTACTTGTCGGCTTTAACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
74838 CTAGAGATTGCCTCATATAA
66 CTAGAGACTGCCTTATCTAA
* * * * * ** * *
74858 AGTCTGCATGTTGGGTTTGACCTTGGAGACTGCCTTAT--CTAAAGTCT-CCTTGTCGG-TTTAA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCC-TGTCGGCTTTGA
* * * * *
74919 CCTTGGAGATTACCTCATCTAA
64 CCCTAGAGACTGCCTTATCTAA
* * * *
74941 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTTAGTCTTCCTATCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
75006 CTAGAGACTG-CTTATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * *
75025 AGTCTTCCTGTCGGCTTTGACCTTGGAGACTTT-TCTA-CCCTTAGTCTACTTGTTGACTTTGGC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
75088 CTTAGAGACTACCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * * * *
75109 AGTTTGCCTATTGGCTTTGACCTTAGAGACTTTCCTATCGCTCAGTCTGCTTGTCGAGACTTTG-
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCG-G-CTTTGA
75173 -----GAGACTGCCTTATCTAA
64 CCCTAGAGACTGCCTTATCTAA
* * * * * *
75190 AGTTTGCCTGTCGGTTTTGACCTTAAAGACTTT-TCTA-CCCTTAGTTTGCGTGTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* *
75253 CTTAGAGACTGTCTTATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * *
75274 AGTCTGCCTGTTGGCTCTGACCTTGGAGACTTT-TCTAT-CCTTAGTCTGCTTGTCGGCTTTG-G
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * * * *
75336 CATTGAAGACTACATCATCTAA
65 CCTAG-AGACTGCCTTATCTAA
* * * * * * * *
75358 AGTCTGCCTGTTGACTTTGACCCTGGAGA-TTTTTTTTACTCTTAGTCTACCTGTCGGCTGTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTAT-CCCTTAGTCTGCCTGTCGGCTTTGAC
* *
75422 CCTAGAGGCTGCCTCATCTAA
65 CCTAGAGACTGCCTTATCTAA
* * * * * *
75443 AGTCTGCCTATTGGCTTTGACCCTGGAGACTTTTTTA-CCCTTAGTCTGCCTATCGACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
75507 ATGGAGACTACCTTATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * * * * * *
75527 AG--T-CCTATCGGCTTTAACCTTGGAGACTTT-TCAACCTTTAGTCTGCTTATCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
75588 CTAGAGACTGCTTCTT-T-TAA
66 CTAGAGACTGC--CTTATCTAA
* * * * * * * **
75608 AGTCTGCCTGTTGGCTTTAACACTGGAGACTTTCCTATCCCTCAATCTGCCTGTCGATTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
75673 CTAGAAACTGTCTCATCTAA
66 CTAGAGACTGCCTTATCTAA
* * * * ** * *
75693 AGTCTACCTATCAGCTTTGACCCTAGATACTACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCT-TAGTCTGCCTGTCGGCTTTGAC
* * * ***
75756 CTTGGAGACTTTCC-TATCCCT
65 CCTAGAGAC-TGCCTTATCTAA
*
75777 AGTGTGCCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACC
75799 AGGGAGAATT
Statistics
Matches: 4442, Mismatches: 1013, Indels: 400
0.76 0.17 0.07
Matches are distributed among these distances:
73 49 0.01
74 2 0.00
75 50 0.01
76 4 0.00
77 3 0.00
78 7 0.00
79 8 0.00
80 20 0.00
81 112 0.03
82 13 0.00
83 240 0.05
84 1762 0.40
85 2013 0.45
86 142 0.03
87 17 0.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (85 bp):
AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACC
CTAGAGACTGCCTTATCTAA
Found at i:70397 original size:170 final size:170
Alignment explanation
Indices: 70102--75765 Score: 2852
Period size: 169 Copynumber: 33.7 Consensus size: 170
70092 CCTCATCTAA
* * * * * *
70102 AGTCTGTCTGTCGACTTTGACCCTAGAGACTACCTTA-CTTAAAGTCTGCCTATCGACTTTAACC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATC-TAAAGTCTGCCTGTTGGCTTTGACC
* * * * * *
70166 CTGGAGACTTT-TCTA-CCCTTAGTCTACTTGTCGGCTTTGA-CCTTGAAGACTGCCATATCTAA
65 CTAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTGCCTTATCTAA
** * *
70228 AGTCCGCCTGTCAGCTTTGACTTTGGAGACTTTCTTATCCCTT
128 AGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* ** * * * *
70271 AGTCTGCCTATCAACTTTAACCCTGGAGTCTACCTTATCTAAAGTCTGCCTGCTGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * * * * *
70336 TAGAGACATTCTTATCCCTTAGTTTGCTTGTCAGTTTTGGCCCTGGAGACTGCTTTATCTAAAGT
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAGT
* *
70401 CTACCTGTCGGCTTTGACCTTGGAGA-TTTTTCTATCCCTC
131 CTACCTGTCGGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* * * * * * * * *
70441 AGTCTGCCTGTTGGCTTTAACCCTAGAGATTGCCTTATCTAAAGTTTGCCTATTGACTTTTACTC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * *
70506 TAGAGA-TTTTTCTATCCCTCAGTTTGCCTGTCGGCTTTGACCCTAGAGACTACCTCATCTAAAG
66 TAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAG
* *
70570 TCTACTTGTCGGCTTTGACCTTGGAGACTTTCATAT-CCTT
130 TCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * * * *
70610 CAGTCTACCTCTCGGCTTTGACCCTAGAGATTGCCTCATCTAAAGTCTACCCGTTGGCTTTGACC
1 -AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACC
* * * * * * * * * *
70675 TTGGAGGCTTTCCTATCCCTCAATCTACCTATCAGCTTTAACCCTAGAAACTGCCTTATCTAAAG
65 CTAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAG
* * * *
70740 TCTGCCTGTTGGCTTTGACCTTTGAGACTTTCCTATCCCTT
130 TCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * *
70781 AGTCTGTCTATCGGCTTTGACCCTAGAGACTACTTTATCTAAAGTCTACTTGTTGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * ** * * * *
70846 TGGAGACTTT-TCTATCCCTCAGTCTGCCTATCGATTTTGACCTTGGAGACTACCTCATCTAAAG
66 TAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAG
* * * *
70910 TCTGCCTGTTGGCTTTGACCCTT-GCGACTTTCGTATCCCTT
130 TCTACCTGTCGGCTTTGA-CCTTGGAGACTTTCTTATCCCTT
* * * * * * **
70951 A----GCCTG-C--C-TT-A-ACTAAAGTCTGCCTTAACTAAAGTCTGCCTGTCGATTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * *
71006 TAGAGACTTTCCTATCCTTTAGTCTGCCTGTCGACTTTGACCCTAGAGACTGTCTCATCTAAAGT
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAGT
** * * *
71071 CTATATGTCGACTTTGACCCTAGAGACTTT-TCTA-CCCTT
131 CTACCTGTCGGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* * * *
71110 AGTCTGCTTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCTGTTGGCTTTGACCT
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * *
71175 TGGAGACTTTCCTATCCCTCAGTTTGCCTGTCGGCTTTGACCTTAGAGACTGCATTATCTAAAGT
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAGT
* * * * * **
71240 CTACCTATCAGCTCTAACCCTATAGACTTT-TCTA-CCCTT
131 CTACCTGTCGGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* ** * * * *
71279 AATCTGCCTGTCAACTTTGACCTTGGAGACTACCTTATCTGAAGTCTGCCTGTCGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * *
71344 TAGAGACTTT-TCTA-CCCTTAGTCTACCTGTCGGCTTTGACTCTAGAGACTGCCTTATCTAAAG
66 TAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAG
* * * * * * *
71407 TCTACCAGTTGGCTCTAACATTGGAGACTTTCCTACCCCTT
130 TCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * *
71448 AGTCTGTCTGTCGGCTTTGACCCAAAAGACTACCTAATCTAAAGTCTGCCAGTTGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* ** * * * *
71513 TAGAGACTTTCCTATCCCTCAGTCTGCCTGTCTACTTTCACTCTAGAGACTTTCC-TATCCTTCA
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTAT-C-TAA
* * *
71577 A-TCTACCTGTCGACTTTGACCTTGGAGAC-TGCTTCAT--CTAA
128 AGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTT-ATCCCT-T
* ** * * * ** * *
71618 AGTTTGCCTGTCGGCTTTGATTCTAGAGTCTTTCC-TATCCCTCAA--CTGTTTATCGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGA
* ** * * * * * *
71680 CCTTAGAGACTACCTTAT--CTAAAGTATACCTGTCAGCTTTGACCTTGGAGACT---TT-TCT-
63 CCCTAGAGACTTTCTTATCCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTA
* * * *** *
71738 -A--C--CCT-TCGGTTTTGACCCTAGAGACAACCTTAT--CTAA
127 AAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCT-T
* * * * * * * * * * *
71775 AGTTTGCCTATTGACTTTAACCCTAAAGACTTTCC-TATCCCT-TAGTCTGCCTATCGACTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGA
* ** * * ** * ** *
71838 CCTTAGAGACTGCCTTA--CCTAAAGTTTGTTTGTTGGCTTTGACCCTAGAGACTTTCATATCCC
63 CCCTAGAGACTTTCTTATCCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTAT--C
* ** * * * ** *
71901 TCAA-TCCGCCTGTCGACTTTGACCCTAGAGACTGCCTTAT--CTAA
125 TAAAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCT-T
* * * ** ** * * *
71945 AGTCTGCATGTCGGCTTTGACCTTGGAGACTTTCGAATCCCT-CAGTCTGCCTGTCGACTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGAC
* * * * * * * * * * *
72009 CCTA-AGA-TTGCTTCT-TCTAAAGTCTACCCGTTGGCTTTGACCTTGGAGAGTTTCC-TATTCT
64 CCTAGAGACTTTCTTATCCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGA-CTGCCTTA-TC-
* * ** *
72070 TTAA-TCTACCTGTCAGCTTTGACCTTGGAGACTGCCTTAT--CTAA
125 TAAAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCT-T
* * * * ** * *
72114 AGTCTGTCTGTCGGCTTCGACCTTTG-GAACT-TTTCTACTCT-TAGTCTGCCTGTAGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAG-ACTACCT-TA-TCTAAAGTCTGCCTGTTGGCTTTGA
* * * ** * * * * * * * **
72176 CCTTGGAAACTGCCTCAT--CTAAAGCCTGTCGGTCAGCTTTGA--CTTGTAGACT-TTTCTACC
63 CCCTAGAGACTTTCTTATCCCT-CAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTGCCT-TA--
* * * * * * **
72236 CCT-CAGTCTGCCTATCGGCTTTAATCC-TAGAGACTTTCTTATCTTTT
123 TCTAAAGTCTACCTGTCGGCTTTGA-CCTTGGAGACTTTCTTATCCCTT
* * *
72283 AGTCTGCCTGTCGGCTTTGACCTTAGAGACTGCCTTATCTAAAGTCTGCCTGTCGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* ** * * *
72348 TAGAGACTTT-TCTATCCCTTAGTCTATCTGTCAGTTTTGACCCTAGAGACTG-CTTCATTTAAA
66 TAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTT-ATCTAAA
** * * **
72411 GTCTGTCTGTTGGCTTTGACCTTTGAGACTTTCCAATCCCTT
129 GTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * ** * ** *
72453 AGTCTGCCTATCGACTTTGACCTTAGAGATTGTCTTATCTAAAGTCTGTCTGTCAGCTTTGACCA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * ** * *
72518 TGGAGACTTTCCTATCCCTTAGTCTACATGTCAACTTTGAACCTTGGAGACTGCCTTATCTAAAG
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTG-ACCCTAGAGACTGCCTTATCTAAAG
* * * * * **
72583 TCTGCTTATCAGCTTTGACCCTACAGACTTT-TCTA-CCCTT
130 TCTACCTGTCGGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* * * * * ** * * *
72623 AGTCTGCCTGCCGGTTTTAACCCTAAAGATTGGCTTATCTAAAGTCTGCATGTCGGCTTTAACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
** * * * * *
72688 TAGAGACTTTCCCATCCCTTAGTCTACCTGTCGGCTTTGACCCTAGAGACTACCTTATCCAAAAT
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAGT
* * * *
72753 CTACTTGT-TGCTTTTGACC-TGGAGACTTTCCTATCCCTC
131 CTACCTGTCGGC-TTTGACCTTGGAGACTTTCTTATCCCTT
* * * * * * *
72792 AGTCTGCTTGTCGGCTTTAACCCTAGGGACTGCCTCATCTAAAGTCTGCATGTTGGGTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * * * *
72857 TGGAG-CTTGCCTCAT--CTAAAGTCT-CTCAGTCGGCTTTGACCTTGGAGAATGCCTTATCTAA
66 TAGAGACTT-TCTTATCCCT-CAGTCTGC-CTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAA
** * *
72918 AGTCTGTCTCTCGGCTTTGACCTTGGAGACTTTCCTATCCCTT
128 AGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * ** * * * * *
72961 AGTCTCCCTATCGGTTTTGACCCTAGAGA-TTGCTCATCTAAAGTCAGTCTGTCGGCTTTGACCT
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * * * * *
73025 TGGAGACTTT-TCTA-CCCTTAGTCTACCTGTTGACTTTGGCCTTGGAGACTGCCTCATCTAAAG
66 TAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAG
* * * * * * * *
73088 TCTGCCTATTGGCTTTGACCCTAGTGACTTTCATATCCCTC
130 TCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * * ** *
73129 AGTCTACCTGTCGACTTTGA-CCTTGAAGACTATCTCATCTAAAGTCTGCCCATTGGTTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAG-AGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACC
* * * * * * *
73193 CTAGAGA-TTT-TTCTACCCTTAGTTTGCCTGTCGGCTTTGA-TCTTGTTGATTGCCTTATCTAA
65 CTAGAGACTTTCTTAT-CCCTCAGTCTGCCTGTCGGCTTTGACCCTAG-AGACTGCCTTATCTAA
* * * *
73255 AGTCTACCTATTGGCTCTGACCTTAGAGACTTT-TCTA-CCCTT
128 AGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* * * * * * * * *
73297 AGTCTGCTTGTCGACTTTGACCTTGGAGACTGCATCATCTAAAGTCTGCCTGTCGACTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * ** * * * * * * *
73362 TGGAGATTTTTTTA-CTTTTAGTCTACTTGTCAGCTTTGA-CCTTGAGGACTACCTCATCTAAAG
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGA-GACTGCCTTATCTAAAG
* * *
73425 TCTACCTATCGGCTTTAATCC-TAGAG-CTTTC-TATCCCTT
130 TCTACCTGTCGGCTTTGA-CCTTGGAGACTTTCTTATCCCTT
* * * * * * **
73464 AGTCTGTCTGTTGGCTTTGACCCTAAAGACTGCCTTATATAAAGTTTGCCTGTTGGCTTTGATAC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * ** *
73529 TGGAGACTTT-TCTA-CCCTTAGTTTGCCTATCGACTTTGACTTTAGAGACTGCCTTATATAAAG
66 TAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAG
* *
73592 TTTGCCTG-CTGGCTTTGACCTTGGAGACTTT-TCTA-CCCTT
130 TCTACCTGTC-GGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* * * *
73632 AGTCTGCCTGTCAGCTTTAACCCTAAAGACTACCTTATCTAAAGTCTGCCTATTGGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * ** * * *
73697 TGGAGACTTTCCTATCCCTAAGTCTGCCTGTCAACTTTGACCTTGGAGACTGCCTCATCTAAAGT
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAGT
* * * *
73762 CT-CTATGTTGGCTTTGACCTTGGAGACTATCTCAT---TT
131 CTAC-CTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * * * * * * * * *
73799 AAAGTTTGCTTGTCGGCTATGACCTTGGAGACTGCCTCATCTAAAGTTTCCCTATCGGCTCTGAC
1 --AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGAC
* * * * * * * * *
73864 CTTAGAGATTTTCCTATCCTTTAGTCTCCCTGTAGGCTTTGACCCTAGAGACTGTCTCATCTAAA
64 CCTAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAA
* * * * * * *
73929 GTCTGCCTATCGGCTTAGACCCTAGAAACTTT-TCTA-CCCTC
129 GTCTACCTGTCGGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* * * * * * *
73970 AGTCTACCTGTCGACTTT-AGCCTTGGAGACTGCCTCATCTAAAGTCT-ACTCGTTGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGA-CCCTAGAGACTACCTTATCTAAAGTCTGCCT-GTTGGCTTTGAC
* * * * * * *
74033 CTTGGAGACTTTCTTATCCCTCAATTTGCCTGTCAGCTTTGACCATGGAGACTGCCTTATCTAAA
64 CCTAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAA
* ** * * *
74098 GTCTGCCCATCGGCTTCGACCTTGGGGA-TTT-TTCTACCCTT
129 GTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTAT-CCCTT
* * * * * * * * **
74139 AGTCTGCTTGTAGGCTTTGACCTTGGAAACTATCTCATCTAAAGTCTGCCGGTCAGCTTTGA-CC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * * *
74203 T-GTAGACTTT-TCTATCCCTCAGTCTGCCTGTCGACTTTAATCCTGGAGACTTTCCTGT-CCTT
66 TAG-AGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCT-TATCTA
* * * *
74265 CAGTCTGCGTGTCGGCTTTGACCTTGGAGACTGTT-TTAT--CTAA
127 AAGTCTACCTGTCGGCTTTGACCTTGGAGACT-TTCTTATCCCT-T
* * * * *
74308 AGTCTGCCTATCGGCTTTGACCCTGGAGACTTTCC-TATCCCT-CAGTCTGCCTGTCGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGA
** * * * * * * * * *
74371 CCCTAGAGACTGCCTCAT--TTAAAGTCTGTCTGTTGGCTTTGACCTTTGAGACTTTCC-AATCC
63 CCCTAGAGACTTTCTTATCCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTTAT--
* * * * * * * * *
74433 CT-TAGTTTGCCTATCGACTTTGACTTTGTAGACTGTCTTAT--CTAA
124 CTAAAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCT-T
* * * * * * * * * **
74478 AGTCTGTCTGTCGACTTTGACCATGGAAACTTTCC-TATCCCT-TAGTCTGCTTATCAGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGA
* * * * * * * * *
74541 CCATGGAGACTTT-TCTAT-CCTTAGTGTACCTATCGGCTTTGACCTTCGAGACTACCTTATCTA
63 CCCTAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTA
* * * *
74604 AAGTCTGCCTATCGGCTTTGACCTTGTAGA-TTT-TTCTACCCTT
127 AAGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTAT-CCCTT
* * * * * ** * * *
74647 AGTCCGTCTGCCAGCTTTAACCCTAGAGACTAGTTTATCTAAAGTCTGCCTATCGGCTTTAACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * * *
74712 TAGAGACTTTCCTATCCCTTAGTCTACCTGTCGGCTTTGACTCTAAAGACTGCCTGATCTAAAAT
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAGT
* * * * * * * *
74777 CTGCTTATTGGTTTTGACCCT-GAGATTTTCTTATCCCTC
131 CTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * * * * * * *
74816 AGTCTACTTGTCGGCTTTAACCCTAGAGATTGCCTCATATAAAGTCTGCATGTTGGGTTTGACCT
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* ** * * * * * * *
74881 TGGAGACTGCCTTAT--CTAAAGTCT-CCTTGTCGG-TTTAACCTTGGAGATTACCTCATCTAAA
66 TAGAGACTTTCTTATCCCT-CAGTCTGCC-TGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAA
*
74942 GTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
129 GTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * * *
74984 AGTCTTCCTATCGGCTTTGACCCTAGAGACT-GCTTATCTAAAGTCTTCCTGTCGGCTTTGACCT
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * * * * * *
75048 TGGAGACTTT-TCTA-CCCTTAGTCTACTTGTTGACTTTGGCCTTAGAGACTACCTCATCTAAAG
66 TAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAG
* * * * * * * *
75111 TTTGCCTATTGGCTTTGACCTTAGAGACTTTCCTATCGCTC
130 TCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * *
75152 AGTCTGCTTGTCGAGACTTTG------GAGACTGCCTTATCTAAAGTTTGCCTGTCGGTTTTGAC
1 AGTCTGCCTGTCG-G-CTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGAC
* * * * * * *
75211 CTTAAAGACTTT-TCTA-CCCTTAGTTTGCGTGTCGGCTTTGACCTTAGAGACTGTCTTATCTAA
64 CCTAGAGACTTTCT-TATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAA
* * *
75274 AGTCTGCCTGTTGGCTCTGACCTTGGAGACTTT-TCTAT-CCTT
128 AGTCTACCTGTCGGCTTTGACCTTGGAGACTTTCT-TATCCCTT
* * * * * * *
75316 AGTCTGCTTGTCGGCTTTG-GCATTGAAGACTACATCATCTAAAGTCTGCCTGTTGACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTAG-AGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACC
* * * * * * * * *
75380 CTGGAGA-TTTTTTTTACTCTTAGTCTACCTGTCGGCTGTGACCCTAGAGGCTGCCTCATCTAAA
65 CTAGAGACTTTCTTAT-CCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAA
* * * * *
75444 GTCTGCCTATTGGCTTTGACCCTGGAGACTTTTTTA-CCCTT
129 GTCTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
* * * * * * * *
75485 AGTCTGCCTATCGACTTTGACCATGGAGACTACCTTATCTAAAG--T-CCTATCGGCTTTAACCT
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* * * * * * *
75547 TGGAGACTTT-TCAACCTTTAGTCTGCTTATCGGCTTTGACCCTAGAGACTGCTTCTT-T-TAAA
66 TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGC--CTTATCTAAA
* * * * *
75609 GTCTGCCTGTTGGCTTTAACAC-TGGAGACTTTCCTATCCCTC
129 GTCTACCTGTCGGCTTTGAC-CTTGGAGACTTTCTTATCCCTT
* ** * ** * * * **
75651 AATCTGCCTGTCGATTTTGACCCTAGAAACTGTCTCATCTAAAGTCTACCTATCAGCTTTGACCC
1 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
* ** * * * *
75716 TAGATACTACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGACCTTGGAGACT
66 TAGAGACTTTCTTATCCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGACT
75766 TTCCTATCCC
Statistics
Matches: 4294, Mismatches: 994, Indels: 414
0.75 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 56 0.01
158 63 0.01
159 9 0.00
160 109 0.03
161 3 0.00
162 8 0.00
163 7 0.00
164 25 0.01
165 178 0.04
166 73 0.02
167 240 0.06
168 774 0.18
169 1543 0.36
170 1070 0.25
171 120 0.03
172 15 0.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (170 bp):
AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTTATCTAAAGTCTGCCTGTTGGCTTTGACCC
TAGAGACTTTCTTATCCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTTATCTAAAGT
CTACCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTT
Found at i:70975 original size:16 final size:16
Alignment explanation
Indices: 70954--70991 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
70944 ATCCCTTAGC
70954 CTGCCTTAACTAAAGT
1 CTGCCTTAACTAAAGT
70970 CTGCCTTAACTAAAGT
1 CTGCCTTAACTAAAGT
70986 CTGCCT
1 CTGCCT
70992 GTCGATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (16 bp):
CTGCCTTAACTAAAGT
Found at i:71721 original size:212 final size:211
Alignment explanation
Indices: 71321--71742 Score: 456
Period size: 212 Copynumber: 2.0 Consensus size: 211
71311 CCTTATCTGA
* * * * *
71321 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTCTACCCTTAGTCTACCTGTCGGCTTTGACTC
1 AGTCTGCCTGTCGACTTTCACCCTAGAGACTTTCCTACCCTTAATCTACCTGTCGACTTTGACTC
* * * *
71386 TAGAGACTGCCTTATCTAAAGTCTACCAGTTGGCTCTAACATTGGAGACTTTCCTACCCCTTAGT
66 TAGAGACTGCCTTATCTAAAGTCTACCAGTCGGCTCTAACATTAGAGACTTTCCTACCCCTCAGA
* * * **
71451 CTGTCTGTCGGCTTTGACCCAAAAGACTACCTAATCTAAAGTCTGCCAGTTGGCTTTGACCCTAG
131 CTGTCTATCGGCTTTGACCCAAAAGACTACCTAATCTAAAGTATACCAGTCAGCTTTGACCCTAG
71516 AGACTTTCCTATCCCTC
196 AGACTTTCCTA-CCCTC
* * *
71533 AGTCTGCCTGTCTACTTTCACTCTAGAGACTTTCCTATCCTTCAATCTACCTGTCGACTTTGAC-
1 AGTCTGCCTGTCGACTTTCACCCTAGAGACTTTCCTACCCTT-AATCTACCTGTCGACTTTGACT
* * * * * * * * *
71597 CTTGGAGACTG-CTTCATCTAAAGTTTGCCTGTCGGCTTTGA-TTCTAGAGTCTTTCCTATCCCT
65 C-TAGAGACTGCCTT-ATCTAAAGTCTACCAGTCGGCTCTAACAT-TAGAGACTTTCCTACCCCT
* ** * * *
71660 CA-ACTGTTTATCGGCTTTGACCTTAGAGACTACCTTATCTAAAGTATACCTGTCAGCTTTGACC
127 CAGACTGTCTATCGGCTTTGACCCAAAAGACTACCTAATCTAAAGTATACCAGTCAGCTTTGACC
* * *
71724 TTGGAGACTTTTCTACCCT
192 CTAGAGACTTTCCTACCCT
71743 TCGGTTTTGA
Statistics
Matches: 171, Mismatches: 35, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
211 4 0.02
212 103 0.60
213 64 0.37
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (211 bp):
AGTCTGCCTGTCGACTTTCACCCTAGAGACTTTCCTACCCTTAATCTACCTGTCGACTTTGACTC
TAGAGACTGCCTTATCTAAAGTCTACCAGTCGGCTCTAACATTAGAGACTTTCCTACCCCTCAGA
CTGTCTATCGGCTTTGACCCAAAAGACTACCTAATCTAAAGTATACCAGTCAGCTTTGACCCTAG
AGACTTTCCTACCCTC
Found at i:71805 original size:73 final size:74
Alignment explanation
Indices: 71670--71817 Score: 165
Period size: 73 Copynumber: 2.0 Consensus size: 74
71660 CAACTGTTTA
* * * * **
71670 TCGGCTTTGACCTTAGAGACTACCTTATCTAAAGTATACCTGTCAGCTTTGACCTTGGAGACTTT
1 TCGGCTTTGACCCTAGAGACAACCTTATCTAAAGTATACCTGTCAGCTTTAACCCTAAAGACTTT
*
71735 TCTA-CCCT
66 CCTATCCCT
* * * * *
71743 TCGGTTTTGACCCTAGAGACAACCTTATCTAAAGTTTGCCTAT-TGACTTTAACCCTAAAGACTT
1 TCGGCTTTGACCCTAGAGACAACCTTATCTAAAGTATACCTGTCAG-CTTTAACCCTAAAGACTT
71807 TCCTATCCCT
65 TCCTATCCCT
71817 T
1 T
71818 AGTCTGCCTA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
72 1 0.02
73 55 0.90
74 5 0.08
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (74 bp):
TCGGCTTTGACCCTAGAGACAACCTTATCTAAAGTATACCTGTCAGCTTTAACCCTAAAGACTTT
CCTATCCCT
Found at i:72682 original size:84 final size:85
Alignment explanation
Indices: 72240--75798 Score: 2358
Period size: 84 Copynumber: 42.3 Consensus size: 85
72230 TCTACCCCTC
* * * * **
72240 AGTCTGCCTATCGGCTTTAATCCTAGAGAC-TTTCTTATCTTTTAGTCTGCCTGTCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
72304 CTTAGAGACTGCCTTATCTAA
65 CTTAGAGACTGCCTTATCTAA
* ** * *
72325 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTCTATCCCTTAGTCTATCTGTCAGTTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
72390 CTAGAGACTG-CTTCATTTAA
66 TTAGAGACTGCCTT-ATCTAA
* * * * * * * *
72410 AGTCTGTCTGTTGGCTTTGACCTTTGAGACTTTCCAATCCCTTAGTCTGCCTATCGACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
72475 TTAGAGATTGTCTTATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * **
72495 AGTCTGTCTGTCAGCTTTGACCATGGAGACTTTCCTATCCCTTAGTCTACATGTCAACTTTGAAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTG-AC
*
72560 CTTGGAGACTGCCTTATCTAA
65 CTTAGAGACTGCCTTATCTAA
* * * ** * * *
72581 AGTCTGCTTATCAGCTTTGACCCTACAGACTTTTCTA-CCCTTAGTCTGCCTGCCGGTTTTAACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * * *
72645 CTAAAGATTGGCTTATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * *
72665 AGTCTGCATGTCGGCTTTAACCCTAGAGACTTTCCCATCCCTTAGTCTACCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
72730 CTAGAGACTACCTTATCCAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * * *
72750 AATCTACTTGT-TGCTTTTGA-CCTGGAGACTTTCCTATCCCTCAGTCTGCTTGTCGGCTTTAAC
1 AGTCTGCCTGTCGGC-TTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
72813 CCTAGGGACTGCCTCATCTAA
65 CTTAGAGACTGCCTTATCTAA
* * * ** * *
72834 AGTCTGCATGTTGGGTTTGACCCTGGAG-CTTGCCTCAT--CTAAAGTCT-CTCAGTCGGCTTTG
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCT-ATCCCT-TAGTCTGC-CTGTCGGCTTTG
* *
72895 ACCTTGGAGAATGCCTTATCTAA
63 ACCTTAGAGACTGCCTTATCTAA
* * * * * * *
72918 AGTCTGTCTCTCGGCTTTGACCTTGGAGACTTTCCTATCCCTTAGTCTCCCTATCGGTTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
72983 CTAGAGATTG-CTCATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * *
73002 AGTCAGTCTGTCGGCTTTGACCTTGGAGACTTTTCTA-CCCTTAGTCTACCTGTTGACTTTGGCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
73066 TTGGAGACTGCCTCATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * *
73086 AGTCTGCCTATTGGCTTTGACCCTAGTGAC-TTTCATATCCCTCAGTCTACCTGTCGACTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
** *
73150 CTT-GAAGACTATCTCATCTAA
65 CTTAG-AGACTGCCTTATCTAA
** * * * * * *
73171 AGTCTGCCCATTGGTTTTGACCCTAGAGATTTTTCTA-CCCTTAGTTTGCCTGTCGGCTTTGATC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
73235 TT-GTTGATTGCCTTATCTAA
66 TTAG-AGACTGCCTTATCTAA
* * * * * * * *
73255 AGTCTACCTATTGGCTCTGACCTTAGAGACTTTTCTA-CCCTTAGTCTGCTTGTCGACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
73319 TTGGAGACTGCATCATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * ** * * *
73339 AGTCTGCCTGTCGACTTTGACCCTGGAGATTTTTTTA-CTTTTAGTCTACTTGTCAGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
73403 TT-GAGGACTACCTCATCTAA
66 TTAGA-GACTGCCTTATCTAA
* * * * * * *
73423 AGTCTACCTATCGGCTTTAATCCTAGAG-C-TTTCTATCCCTTAGTCTGTCTGTTGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
73486 CTAAAGACTGCCTTATATAA
66 TTAGAGACTGCCTTATCTAA
* * ** * * * *
73506 AGTTTGCCTGTTGGCTTTGATACTGGAGACTTTTCTA-CCCTTAGTTTGCCTATCGACTTTGACT
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
*
73570 TTAGAGACTGCCTTATATAA
66 TTAGAGACTGCCTTATCTAA
* * * *
73590 AGTTTGCCTG-CTGGCTTTGACCTTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCAGCTTTAAC
1 AGTCTGCCTGTC-GGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
73653 CCTAAAGACTACCTTATCTAA
65 CTTAGAGACTGCCTTATCTAA
* * * * **
73674 AGTCTGCCTATTGGCTTTGACCCTGGAGACTTTCCTATCCCTAAGTCTGCCTGTCAACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
73739 TTGGAGACTGCCTCATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * *
73759 AGTCT-CTATGTTGGCTTTGACCTTGGAGAC-TATCTCAT---TTAAAGTTTGCTTGTCGGCTAT
1 AGTCTGC-CTGTCGGCTTTGACCCTGGAGACTTTTCT-ATCCCTT--AGTCTGCCTGTCGGCTTT
* *
73819 GACCTTGGAGACTGCCTCATCTAA
62 GACCTTAGAGACTGCCTTATCTAA
* * * * * * * * *
73843 AGTTTCCCTATCGGCTCTGACCTTAGAGA-TTTTCCTATCCTTTAGTCTCCCTGTAGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTT-CTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
73907 CCTAGAGACTGTCTCATCTAA
65 CTTAGAGACTGCCTTATCTAA
* * * * * * *
73928 AGTCTGCCTATCGGCTTAGACCCTAGAAACTTTTCTA-CCCTCAGTCTACCTGTCGACTTT-AGC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGA-C
* *
73991 CTTGGAGACTGCCTCATCTAA
65 CTTAGAGACTGCCTTATCTAA
* * * * * * *
74012 AGTCT-ACTCGTTGGCTTTGACCTTGGAGAC-TTTCTTATCCCTCAATTTGCCTGTCAGCTTTGA
1 AGTCTGCCT-GTCGGCTTTGACCCTGGAGACTTTTC-TATCCCTTAGTCTGCCTGTCGGCTTTGA
* *
74075 CCATGGAGACTGCCTTATCTAA
64 CCTTAGAGACTGCCTTATCTAA
** * * * * * *
74097 AGTCTGCCCATCGGCTTCGACCTTGGGGATTTTTCTA-CCCTTAGTCTGCTTGTAGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * ** *
74161 TTGGAAACTATCTCATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * *
74181 AGTCTGCCGGTCAGCTTTGA-CCTGTAGACTTTTCTATCCCTCAGTCTGCCTGTCGACTTTAATC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGA-C
* * * **
74245 C-TGGAGACTTTCCTGT-CCTTC
65 CTTAGAGAC-TGCCT-TATCTAA
* * * *
74266 AGTCTGCGTGTCGGCTTTGACCTTGGAGACTGTTT-TAT--CTAAAGTCTGCCTATCGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACT-TTTCTATCCCT-TAGTCTGCCTGTCGGCTTTGA
* * * *
74328 CCCTGGAGACTTTCC-TATCCCT-C
64 CCTTAGAGAC-TGCCTTAT--CTAA
* ** * *
74351 AGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTCAT---TTAAAGTCTGTCTGTTGGCTTTG
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCT-ATCCCTT--AGTCTGCCTGTCGGCTTTG
* * * *
74412 ACCTTTGAGACTTTCC-AATCCCT-T
63 ACCTTAGAGAC-TGCCTTAT--CTAA
* * * ** * * * * *
74436 AGTTTGCCTATCGACTTTGACTTTGTAGAC-TGTCTTAT--CTAAAGTCTGTCTGTCGACTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TATCCCT-TAGTCTGCCTGTCGGCTTTGA
* * * * *
74498 CCATGGAAACTTTCC-TATCCCT-T
64 CCTTAGAGAC-TGCCTTAT--CTAA
* * * * * * *
74521 AGTCTGCTTATCAGCTTTGACCATGGAGACTTTTCTAT-CCTTAGTGTACCTATCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
74585 TTCGAGACTACCTTATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * * * *
74605 AGTCTGCCTATCGGCTTTGACCTTGTAGATTTTTCTA-CCCTTAGTCCGTCTGCCAGCTTTAACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
74669 CTAGAGACTAG-TTTATCTAA
66 TTAGAGACT-GCCTTATCTAA
* * * * *
74689 AGTCTGCCTATCGGCTTTAACCCTAGAGACTTTCCTATCCCTTAGTCTACCTGTCGGCTTTGA-C
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
74753 TCTAAAGACTGCCTGATCTAA
66 T-TAGAGACTGCCTTATCTAA
* * * * * * * * *
74774 AATCTGCTTATTGGTTTTGACCCT-GAGA-TTTTCTTATCCCTCAGTCTACTTGTCGGCTTTAAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * * *
74837 CCTAGAGATTGCCTCATATAA
65 CTTAGAGACTGCCTTATCTAA
* * * * ** * *
74858 AGTCTGCATGTTGGGTTTGACCTTGGAGAC-TGCCTTAT--CTAAAGTCT-CCTTGTCGG-TTTA
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TATCCCT-TAGTCTGCC-TGTCGGCTTTG
* * * *
74918 ACCTTGGAGATTACCTCATCTAA
63 ACCTTAGAGACTGCCTTATCTAA
* * *
74941 AGTCTGCCTGTCGGCTTTGACCTTGGAGAC-TTTCTTATCCCTTAGTCTTCCTATCGGCTTTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TATCCCTTAGTCTGCCTGTCGGCTTTGAC
*
75005 CCTAGAGACTG-CTTATCTAA
65 CTTAGAGACTGCCTTATCTAA
* * * * * * *
75025 AGTCTTCCTGTCGGCTTTGACCTTGGAGACTTTTCTA-CCCTTAGTCTACTTGTTGACTTTGGCC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* *
75089 TTAGAGACTACCTCATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * * * * * *
75109 AGTTTGCCTATTGGCTTTGACCTTAGAGACTTTCCTATCGCTCAGTCTGCTTGTC-G---AGACT
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
*
75170 TTGGAGACTGCCTTATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * ** * *
75190 AGTTTGCCTGTCGGTTTTGACCTTAAAGACTTTTCTA-CCCTTAGTTTGCGTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
*
75254 TTAGAGACTGTCTTATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * *
75274 AGTCTGCCTGTTGGCTCTGACCTTGGAGACTTTTCTAT-CCTTAGTCTGCTTGTCGGCTTTGGCA
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
75338 TT-GAAGACTACATCATCTAA
66 TTAG-AGACTGCCTTATCTAA
* * * * * * *
75358 AGTCTGCCTGTTGACTTTGACCCTGGAGA-TTTTTTTTACTCTTAGTCTACCTGTCGGCTGTGAC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTAT-CCCTTAGTCTGCCTGTCGGCTTTGAC
* * *
75422 CCTAGAGGCTGCCTCATCTAA
65 CTTAGAGACTGCCTTATCTAA
* * * * *
75443 AGTCTGCCTATTGGCTTTGACCCTGGAGACTTTTTTA-CCCTTAGTCTGCCTATCGACTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * *
75507 ATGGAGACTACCTTATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * * *
75527 AG--T-CCTATCGGCTTTAACCTTGGAGACTTTTC-AACCTTTAGTCTGCTTATCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
*
75588 CTAGAGACTGCTTCTT-T-TAA
66 TTAGAGACTGC--CTTATCTAA
* * * * * * **
75608 AGTCTGCCTGTTGGCTTTAACACTGGAGACTTTCCTATCCCTCAATCTGCCTGTCGATTTTGACC
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
* * * *
75673 CTAGAAACTGTCTCATCTAA
66 TTAGAGACTGCCTTATCTAA
* * * * * ** * *
75693 AGTCTACCTATCAGCTTTGACCCTAGATAC-TACCTTAT--CTAAAGTCTGCCTGTTGGCTTTGA
1 AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTC-TATCCCT-TAGTCTGCCTGTCGGCTTTGA
* * ***
75755 CCTTGGAGACTTTCC-TATCCCT
64 CCTTAGAGAC-TGCCTTATCTAA
*
75777 AGTGTGCCTGTCGGCTTTGACC
1 AGTCTGCCTGTCGGCTTTGACC
75799 AGGGAGAATT
Statistics
Matches: 2759, Mismatches: 606, Indels: 219
0.77 0.17 0.06
Matches are distributed among these distances:
80 14 0.01
81 114 0.04
82 8 0.00
83 221 0.08
84 1288 0.47
85 1008 0.37
86 101 0.04
87 5 0.00
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (85 bp):
AGTCTGCCTGTCGGCTTTGACCCTGGAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC
TTAGAGACTGCCTTATCTAA
Found at i:75609 original size:81 final size:80
Alignment explanation
Indices: 75398--75696 Score: 213
Period size: 81 Copynumber: 3.6 Consensus size: 80
75388 TTTTTTTACT
* * * * * * * *
75398 CTTAGTCTACCTGTCGGCTGTGACCCTAGAGGCTGCCTCATCTAAAGTCTGCCTATTGGCTTTGA
1 CTTAGTCTGCCTATCGGCTTTGACCCTAGAGACTG-CTCTTTTAAAG--T-CCTATCGGCTTTAA
**
75463 CCCTGGAGACTTTTTTACC
62 CCCTGGAGACTTTTCAACC
* * * *
75482 CTTAGTCTGCCTATCGACTTTGACCATGGAGACTAC-CTTATCTAAAGTCCTATCGGCTTTAACC
1 CTTAGTCTGCCTATCGGCTTTGACCCTAGAGACTGCTCTT-T-TAAAGTCCTATCGGCTTTAACC
*
75546 TTGGAGACTTTTCAACC
64 CTGGAGACTTTTCAACC
* * * *
75563 TTTAGTCTGCTTATCGGCTTTGACCCTAGAGACTGCTTCTTTTAAAGTCTGCCTGTTGGCTTTAA
1 CTTAGTCTGCCTATCGGCTTTGACCCTAGAGACTGC-TCTTTTAAAG--T-CCTATCGGCTTTAA
* * *
75628 CACTGGAGACTTTCCTATCC
62 CCCTGGAGACTTTTC-AACC
* * * ** * * *
75648 CTCAATCTGCCTGTCGATTTTGACCCTAGAAACTGTCTCATCTAAAGTC
1 CTTAGTCTGCCTATCGGCTTTGACCCTAGAGACTG-CTCTTTTAAAGTC
75697 TACCTATCAG
Statistics
Matches: 169, Mismatches: 37, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
81 63 0.37
82 5 0.03
83 6 0.04
84 56 0.33
85 38 0.22
86 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (80 bp):
CTTAGTCTGCCTATCGGCTTTGACCCTAGAGACTGCTCTTTTAAAGTCCTATCGGCTTTAACCCT
GGAGACTTTTCAACC
Found at i:75741 original size:250 final size:250
Alignment explanation
Indices: 74931--75765 Score: 571
Period size: 250 Copynumber: 3.3 Consensus size: 250
74921 TTGGAGATTA
* * * * * ** * *
74931 CCTCATCTAAAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTCTTATCCCTTAGTCTTCCTATC
1 CCTCATCTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTACCTTA-CCCTAAGTCTGCCTATC
* * * * * *
74996 GGCTTTGACCCTAGAGACT-GCTTATCTAAAGTCTTCCTGTCGGCTTTGACCTTGGAGACTTTTC
65 GACTTTGACCATGGAGACTACCTTATCTAAAG---TCCTATCGGCTTTAACCTTGGAGACTTTTC
* * * * * * * * * *
75060 TACCCTTAGTCTACTTGTTGACTTTGGCCTTAG-AGACTACCTCATCTAAAGTTTGCCTATTGGC
127 TAACCTTAGTCTGCTTATCGGCTTT-GCCATAGAAGACTACATCATCTAAAGTCTGCCTGTTGAC
* * * * * * ** * *
75124 TTTGAC-CTTAGAGACTTTCCTAT-CGCTCAGTCTGCTTGTCGA----GACTTTGGAGACTG
191 TTTAACAC-TGGAGA-TTTCCTATACCCTCAATCTACCTGTCGACTGTGACCCTAGAAACTG
* * * * * * * * ** * * * *
75180 CCTTATCTAAAGTTTGCCTGTCGGTTTTGACCTTAAAGACT-TTTCTACCCTTAGTTTGCGTGTC
1 CCTCATCTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTACCT-TACCCTAAGTCTGCCTATC
* * * ** * * * *
75244 GGCTTTGACCTTAGAGACTGTCTTATCTAAAGTCTGCCTGTTGGCTCTGACCTTGGAGACTTTTC
65 GACTTTGACCATGGAGACTACCTTATCTAAAG--T-CCTATCGGCTTTAACCTTGGAGACTTTTC
* * * *
75309 TATCCTTAGTCTGCTTGTCGGCTTTGGCATTGAAGACTACATCATCTAAAGTCTGCCTGTTGACT
127 TAACCTTAGTCTGCTTATCGGCTTTGCCATAGAAGACTACATCATCTAAAGTCTGCCTGTTGACT
* * ** * * * * * **
75374 TTGACCCTGGAGATTTTTTTTACTCTTAGTCTACCTGTCGGCTGTGACCCTAGAGGCTG
192 TTAACACTGGAGATTTCCTATACCCTCAATCTACCTGTCGACTGTGACCCTAGAAACTG
* ** * *** *
75433 CCTCATCTAAAGTCTGCCTATTGGCTTTGACCCTGGAGACTTTTTTACCCTTAGTCTGCCTATCG
1 CCTCATCTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTACCTTACCCTAAGTCTGCCTATCG
75498 ACTTTGACCATGGAGACTACCTTATCTAAAGTCCTATCGGCTTTAACCTTGGAGACTTTTC-AAC
66 ACTTTGACCATGGAGACTACCTTATCTAAAGTCCTATCGGCTTTAACCTTGGAGACTTTTCTAAC
* * * * * *
75562 CTTTAGTCTGCTTATCGGCTTTGACCCTAG-AGACTGCTTCTTTTAAAGTCTGCCTGTTGGCTTT
131 C-TTAGTCTGCTTATCGGCTTTG-CCATAGAAGACTACATCATCTAAAGTCTGCCTGTTGACTTT
* * *
75626 AACACTGGAGACTTTCCTAT-CCCTCAATCTGCCTGTCGATTTTGACCCTAGAAACTG
194 AACACTGGAGA-TTTCCTATACCCTCAATCTACCTGTCGACTGTGACCCTAGAAACTG
* * * * *
75683 TCTCATCTAAAGTCTACCTATCAGCTTTGACCCTAGATACTACCTTA-TCTAAAGTCTGCCTGTT
1 CCTCATCTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTACCTTACCCT-AAGTCTGCCTATC
* *
75747 GGCTTTGACCTTGGAGACT
65 GACTTTGACCATGGAGACT
75766 TTCCTATCCC
Statistics
Matches: 472, Mismatches: 99, Indels: 29
0.79 0.17 0.05
Matches are distributed among these distances:
248 43 0.09
249 154 0.33
250 177 0.38
251 9 0.02
253 86 0.18
254 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.37
Consensus pattern (250 bp):
CCTCATCTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTACCTTACCCTAAGTCTGCCTATCG
ACTTTGACCATGGAGACTACCTTATCTAAAGTCCTATCGGCTTTAACCTTGGAGACTTTTCTAAC
CTTAGTCTGCTTATCGGCTTTGCCATAGAAGACTACATCATCTAAAGTCTGCCTGTTGACTTTAA
CACTGGAGATTTCCTATACCCTCAATCTACCTGTCGACTGTGACCCTAGAAACTG
Found at i:76319 original size:10 final size:9
Alignment explanation
Indices: 76306--76364 Score: 61
Period size: 9 Copynumber: 6.8 Consensus size: 9
76296 AAAATAATTT
*
76306 AAAAAATTC
1 AAAAAAATC
76315 AAAAAAATCC
1 AAAAAAAT-C
76325 AAAAAAATC
1 AAAAAAATC
76334 --AAAAATC
1 AAAAAAATC
*
76341 AAATAAAT-
1 AAAAAAATC
*
76349 AAAAAAATT
1 AAAAAAATC
76358 AAAAAAA
1 AAAAAAA
76365 ACGTGAAAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
7 7 0.16
8 7 0.16
9 20 0.47
10 9 0.21
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAAAAATC
Found at i:76354 original size:17 final size:18
Alignment explanation
Indices: 76315--76356 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
76305 TAAAAAATTC
76315 AAAAAAATCCAAAAAAAT
1 AAAAAAATCCAAAAAAAT
* *
76333 -CAAAAAT-CAAATAAAT
1 AAAAAAATCCAAAAAAAT
76349 AAAAAAAT
1 AAAAAAAT
76357 TAAAAAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAAATCCAAAAAAAT
Found at i:76364 original size:9 final size:9
Alignment explanation
Indices: 76289--76364 Score: 50
Period size: 10 Copynumber: 8.4 Consensus size: 9
76279 ATCAAAAATT
*
76289 AAAACTAAA
1 AAAATTAAA
*
76298 AATAATTTAA
1 AA-AATTAAA
76308 AAAATTCAAA
1 AAAATT-AAA
*
76318 AAAATCCAAA
1 AAAAT-TAAA
*
76328 AAAA-T-CA
1 AAAATTAAA
*
76335 AAAATCAAA
1 AAAATTAAA
*
76344 TAAA-TAAA
1 AAAATTAAA
76352 AAAATTAAA
1 AAAATTAAA
76361 AAAA
1 AAAA
76365 ACGTGAAAGA
Statistics
Matches: 50, Mismatches: 11, Indels: 12
0.68 0.15 0.16
Matches are distributed among these distances:
7 5 0.10
8 6 0.12
9 18 0.36
10 21 0.42
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAATTAAA
Found at i:77685 original size:17 final size:16
Alignment explanation
Indices: 77659--77697 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
77649 AATTTCACGG
77659 TATTTTTGTT-TCTCTT
1 TATTTTTGTTGT-TCTT
77675 TATTGTTTGTTGTTCTT
1 TATT-TTTGTTGTTCTT
77692 TATTTT
1 TATTTT
77698 CCAATTGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
17 14 0.67
18 1 0.05
ACGTcount: A:0.08, C:0.08, G:0.10, T:0.74
Consensus pattern (16 bp):
TATTTTTGTTGTTCTT
Found at i:79123 original size:3 final size:3
Alignment explanation
Indices: 79115--79149 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
79105 TTGACTTTTC
79115 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
79150 AGGTCCCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:81291 original size:20 final size:19
Alignment explanation
Indices: 81247--81298 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
81237 ACCCTTGAAA
81247 GTATCGATACATATCTTGAT
1 GTATCGATACATATCTT-AT
*
81267 ATATCGATACATCATGCTT-T
1 GTATCGATACAT-AT-CTTAT
81287 GTATCGATACAT
1 GTATCGATACAT
81299 GAAGAAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 23 0.82
21 2 0.07
22 3 0.11
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (19 bp):
GTATCGATACATATCTTAT
Found at i:83658 original size:21 final size:21
Alignment explanation
Indices: 83634--83674 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83624 ATACTCTTAA
*
83634 TTCATTACATTCCAATGGAAT
1 TTCATTACATTCCAAAGGAAT
*
83655 TTCATTACATTTCAAAGGAA
1 TTCATTACATTCCAAAGGAA
83675 AAAATAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (21 bp):
TTCATTACATTCCAAAGGAAT
Found at i:84451 original size:21 final size:19
Alignment explanation
Indices: 84425--84477 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 19
84415 ATTAAATTTT
*
84425 ATATAATAAATAATATTTTAA
1 ATATAATAAA-AATA-TATAA
84446 ATATAAT-AAAATATATAA
1 ATATAATAAAAATATATAA
84464 ATATAATATAAAAT
1 ATATAATA-AAAAT
84478 GTAAAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.38
19 4 0.14
20 7 0.24
21 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATAATAAAAATATATAA
Found at i:84458 original size:26 final size:26
Alignment explanation
Indices: 84362--84474 Score: 72
Period size: 26 Copynumber: 4.2 Consensus size: 26
84352 ATATAACCTG
84362 ATATAA-AAAATTAAAATTAATATATCATAA
1 ATATAATAAAA-T-AAA-TAATATAT--TAA
* *
84392 TATATAATAAAAATTATTAATATATTAA
1 -ATATAAT-AAAATAAATAATATATTAA
* * * *
84420 ATTTTATATAATAAATAATATTTTAA
1 ATATAATAAAATAAATAATATATTAA
*
84446 ATATAATAAAATATATAA-ATA-T-A
1 ATATAATAAAATAAATAATATATTAA
84469 ATATAA
1 ATATAA
84475 AATGTAAAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
23 7 0.10
24 1 0.01
25 2 0.03
26 29 0.43
27 5 0.07
28 3 0.04
30 8 0.12
31 7 0.10
32 1 0.01
33 4 0.06
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (26 bp):
ATATAATAAAATAAATAATATATTAA
Found at i:84482 original size:18 final size:18
Alignment explanation
Indices: 84383--84471 Score: 67
Period size: 18 Copynumber: 4.9 Consensus size: 18
84373 TAAAATTAAT
84383 ATATCATAATATATAATAAA
1 ATAT-ATAA-ATATAATAAA
* *
84403 A-ATTATTAATATATTAAA
1 ATA-TATAAATATAATAAA
* * *
84421 TTTTATATAATA-AATAAT
1 ATATATA-AATATAATAAA
*
84439 AT-TTTAAATATAATAAA
1 ATATATAAATATAATAAA
84456 ATATATAAATATAATA
1 ATATATAAATATAATA
84472 TAAAATGTAA
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
16 4 0.08
17 10 0.19
18 29 0.55
19 8 0.15
20 2 0.04
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATATAAATATAATAAA
Found at i:85315 original size:19 final size:20
Alignment explanation
Indices: 85291--85331 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
85281 ACTTGGTTAC
85291 AAATAATA-ATTTTTAATTA
1 AAATAATATATTTTTAATTA
*
85310 AAATAATATATTTTTATTTA
1 AAATAATATATTTTTAATTA
85330 AA
1 AA
85332 TTTAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AAATAATATATTTTTAATTA
Found at i:90092 original size:21 final size:21
Alignment explanation
Indices: 90067--90120 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
90057 GTATCTTTGT
90067 ATGAAATG-ATGCATTGGTTGG
1 ATGAAA-GAATGCATTGGTTGG
**
90088 ATGAAAGAATGCATTTTTTGG
1 ATGAAAGAATGCATTGGTTGG
90109 ATGAAA-AATGCA
1 ATGAAAGAATGCA
90121 ACTTTTAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (21 bp):
ATGAAAGAATGCATTGGTTGG
Found at i:90126 original size:20 final size:21
Alignment explanation
Indices: 90084--90126 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
90074 GATGCATTGG
**
90084 TTGGATGAAAGAATGCATTTT
1 TTGGATGAAAGAATGCAACTT
90105 TTGGATGAAA-AATGCAACTT
1 TTGGATGAAAGAATGCAACTT
90125 TT
1 TT
90127 AATAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (21 bp):
TTGGATGAAAGAATGCAACTT
Found at i:90126 original size:21 final size:21
Alignment explanation
Indices: 90084--90126 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
90074 GATGCATTGG
*
90084 TTGGATGAAAGAATGCATTTT
1 TTGGATGAAAGAATGCACTTT
90105 TTGGATGAAA-AATGCAACTTT
1 TTGGATGAAAGAATGC-ACTTT
90126 T
1 T
90127 AATAACCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (21 bp):
TTGGATGAAAGAATGCACTTT
Found at i:92350 original size:34 final size:32
Alignment explanation
Indices: 92302--92370 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
92292 CGTTACAAGC
*
92302 CAATGTATCGATACAAT-TTGGTCATGTATCGATA
1 CAATGTATCAATAC-ATCTT-GT-ATGTATCGATA
92336 CAATGTATCAATACATCTTGTATGTATCGATA
1 CAATGTATCAATACATCTTGTATGTATCGATA
92368 CAA
1 CAA
92371 ACAGTTAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
32 14 0.42
33 4 0.12
34 15 0.45
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (32 bp):
CAATGTATCAATACATCTTGTATGTATCGATA
Found at i:92462 original size:20 final size:21
Alignment explanation
Indices: 92411--92463 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
92401 ACCAATTACC
*
92411 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
* *
92432 AGTATCTATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
92452 TGTATCGATACA
1 TGTATCGATACA
92464 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 13 0.50
21 12 0.46
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:92469 original size:13 final size:13
Alignment explanation
Indices: 92451--92475 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92441 ACATTTGGTC
92451 ATGTATCGATACA
1 ATGTATCGATACA
92464 ATGTATCGATAC
1 ATGTATCGATAC
92476 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:100036 original size:21 final size:21
Alignment explanation
Indices: 99995--100038 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
99985 CTCCCCTTTA
* *
99995 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
100016 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
100037 TC
1 TC
100039 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:101862 original size:13 final size:13
Alignment explanation
Indices: 101844--101882 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
101834 ATAATCACCC
101844 TGTATCGATACAA
1 TGTATCGATACAA
101857 TGTATCGATACAA
1 TGTATCGATACAA
101870 TGTATCGATACAA
1 TGTATCGATACAA
101883 AGAAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Done.