Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold838
Parameters: 2 7 7 80 10 50 1000
Length:  48534

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2855--2967
55
2.1
54
88
8
167
26
23
12
37
1.91
5523--5566
3
14.7
3
100
0
88
65
0
0
34
0.93
6543--6979
170
2.6
170
82
0
480
25
15
18
40
1.90
8779--8909
68
2.0
67
83
8
169
23
12
20
42
1.87
20011--20061
26
2.0
26
84
7
68
39
7
11
41
1.71
20661--20699
14
2.8
14
88
0
51
56
2
0
41
1.13
21681--21713
12
2.7
13
86
13
52
27
0
0
72
0.85
21963--22033
36
1.9
36
83
8
90
49
0
0
50
1.00
27553--27628
18
4.5
18
67
23
58
47
0
0
52
1.00
27601--27667
20
3.4
20
76
17
61
43
2
0
53
1.16
27924--27972
18
2.8
17
84
6
62
46
0
2
51
1.12
27951--27997
25
1.9
25
86
4
69
55
0
4
40
1.19
30069--30116
15
3.2
14
80
11
51
54
0
0
45
0.99
30273--30297
2
12.5
2
100
0
50
48
0
0
52
1.00
30459--30525
32
2.2
30
82
12
75
44
1
2
50
1.26
30489--30526
7
5.6
7
81
6
51
47
0
2
50
1.15
30484--30525
18
2.3
19
84
12
52
45
0
2
52
1.13
30494--30535
22
1.9
22
85
9
59
47
0
2
50
1.14
31297--31348
23
2.2
23
86
3
68
75
0
5
19
1.01
35746--35797
4
13.0
4
95
0
77
44
25
5
25
1.76
40240--40285
24
2.0
22
83
8
56
50
10
0
39
1.38
40649--40704
6
9.2
6
80
9
60
44
1
1
51
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41770--41839
29
2.4
30
76
11
83
61
0
2
35
1.11
41822--41988
19
8.7
19
68
19
80
56
2
3
37
1.30
43433--43486
20
2.7
20
75
11
56
38
0
3
57
1.17
43803--43880
38
2.1
38
85
4
104
48
1
1
48
1.17
45324--45372
13
3.5
13
82
17
62
36
0
0
63
0.95
45326--45372
14
3.2
14
85
8
67
36
0
0
63
0.94
45801--45833
16
2.0
17
88
5
50
60
0
0
39
0.97
48012--48040
15
1.9
15
100
0
58
37
27
6
27
1.82

Tables:   1

The End!