genome.fa.s839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold839
Parameters: 2 7 7 80 10 50 1000
Length:  50042

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23--1306	28	45.9	28	79	8	1154	31	26	16	24	1.96
60--5095	84	59.5	82	79	8	4064	31	26	16	25	1.97
23--5112	56	90.7	55	78	8	4056	31	26	16	25	1.97
160--5112	28	175.5	30	73	12	565	31	26	16	25	1.97
1319--5112	28	134.6	28	81	5	3860	31	26	16	25	1.97
5269--5343	25	3.2	25	68	14	77	21	28	18	32	1.97
5226--5437	48	4.5	47	91	1	268	20	26	18	33	1.96
5251--5320	21	3.1	22	69	15	70	22	28	15	32	1.95
5226--5437	94	2.3	92	85	4	264	20	26	18	33	1.96
6136--6300	20	7.7	19	74	20	132	30	15	13	40	1.85
6125--6300	91	1.9	91	97	0	334	30	15	13	40	1.85
11061--11142	41	2.0	41	86	9	114	39	8	19	32	1.82
14856--14886	15	2.1	15	100	0	62	32	6	25	35	1.82
21462--21532	27	2.6	27	88	6	99	22	7	23	46	1.76
32673--32778	27	3.9	27	89	1	149	30	31	13	25	1.93
32673--32778	54	1.9	55	90	1	169	30	31	13	25	1.93
32685--32798	27	4.1	27	87	5	131	31	33	13	21	1.92
32708--33089	28	13.6	28	83	6	371	30	30	16	22	1.96
32805--36161	56	59.4	56	82	5	3496	30	27	17	24	1.97
32708--36161	84	40.7	84	80	6	3158	30	27	16	24	1.97
33103--36161	28	108.5	28	82	4	3121	30	27	16	24	1.97
36317--36391	25	3.2	25	68	14	77	21	28	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36277--36434	46	3.4	46	90	2	228	23	27	17	31	1.96
36299--36368	21	3.1	22	69	15	70	22	28	15	32	1.95
36308--36485	48	3.8	48	88	3	227	21	26	17	33	1.96
37182--37347	20	7.8	19	74	19	116	30	15	12	41	1.84
37221--37397	51	3.7	49	76	16	201	29	16	10	43	1.81
37171--37397	91	2.5	92	93	1	386	29	16	11	42	1.83
37356--37397	20	2.0	20	90	4	66	30	16	9	42	1.80
41041--41097	22	2.5	23	80	11	73	40	15	8	35	1.79
43607--43688	41	2.0	41	86	9	114	39	8	19	32	1.82
44996--45083	43	2.0	43	97	0	167	30	17	21	30	1.96
45274--45319	20	2.3	20	84	0	56	32	4	52	10	1.56
45396--45490	27	3.5	27	92	4	147	46	24	6	23	1.75

Tables:   1

The End!