genome.fa.s841.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold841
Parameters: 2 7 7 80 10 50 1000
Length:  48382

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5546--5597	20	2.6	20	87	6	70	42	11	15	30	1.82
11450--11515	28	2.4	28	87	5	89	22	28	21	27	1.99
11480--11674	78	2.5	78	80	12	206	25	26	16	30	1.97
21228--21269	18	2.3	18	80	16	50	21	11	16	50	1.77
21235--21268	18	1.9	18	88	5	52	23	14	17	44	1.86
25340--26093	62	12.4	62	85	3	953	26	26	17	28	1.98
25338--26093	182	4.1	183	88	3	1017	26	26	17	28	1.98
25859--26642	277	2.9	274	81	5	890	26	27	18	27	1.98
26112--26368	61	4.3	61	85	4	330	27	28	19	24	1.98
26389--27024	62	10.5	57	71	17	212	25	24	19	30	1.98
26465--27029	62	9.1	60	82	6	599	24	24	18	31	1.98
26466--27029	125	4.5	125	88	1	769	25	24	18	31	1.98
27057--27224	42	3.8	43	81	11	189	18	20	14	46	1.84
27193--27272	34	2.4	34	76	17	87	20	23	11	45	1.83
27926--27975	24	2.1	24	92	0	82	32	16	8	44	1.76
27918--27976	24	2.8	20	74	18	64	28	15	10	45	1.78
30421--30491	28	2.5	28	86	4	90	25	36	15	22	1.93
30446--30646	79	2.5	79	86	3	271	24	29	17	28	1.97
31675--31725	20	2.5	21	81	9	61	41	7	17	33	1.79
32525--32607	32	2.6	32	78	0	94	39	12	9	38	1.75
32606--32669	30	2.1	30	88	5	94	39	6	10	43	1.65
33177--33240	11	6.2	11	68	14	55	50	7	3	39	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33177--33240	31	2.1	31	85	5	85	50	7	3	39	1.47
35525--35554	13	2.3	13	94	0	51	36	16	10	36	1.82
38799--38848	21	2.4	22	83	9	61	32	20	0	48	1.50
40346--40370	13	1.9	13	100	0	50	36	16	16	32	1.90
40325--40389	32	2.0	32	85	8	87	32	15	13	38	1.87
40359--40411	20	2.7	20	91	2	81	30	13	18	37	1.89
40440--40493	20	2.7	20	88	5	74	33	14	14	37	1.88
40461--40627	72	2.5	66	88	9	234	33	14	15	35	1.89
44952--44976	13	1.9	13	100	0	50	32	16	16	36	1.90
47564--47636	20	3.5	20	78	14	76	38	15	8	38	1.77

Tables:   1

The End!