genome.fa.s843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold843
Parameters: 2 7 7 80 10 50 1000
Length:  43975

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2099--2148	18	2.7	19	87	3	75	28	12	20	40	1.87
5652--5718	37	1.9	35	88	11	102	32	11	25	29	1.92
7239--7399	84	1.9	84	81	5	191	54	3	17	25	1.58
9995--10019	13	1.9	13	100	0	50	36	16	16	32	1.90
9975--10044	33	2.1	33	89	0	104	34	11	14	40	1.82
10084--10108	13	1.9	13	100	0	50	32	16	16	36	1.90
14253--14292	13	3.1	13	96	0	71	30	20	15	35	1.93
14762--14828	37	1.9	35	88	11	102	32	11	25	29	1.92
19360--19400	9	4.9	8	82	11	55	87	12	0	0	0.53
19354--19402	17	2.7	19	90	6	75	87	12	0	0	0.54
20696--20886	31	6.0	31	79	8	213	23	27	14	34	1.93
20686--20851	61	2.6	62	86	6	226	23	27	13	34	1.93
20697--20901	34	6.3	33	81	8	244	23	27	13	34	1.93
20916--21120	34	6.5	33	79	14	227	21	34	10	33	1.88
20895--21077	95	1.9	95	95	0	330	20	33	12	33	1.90
20950--21160	61	3.4	60	89	2	287	23	33	12	30	1.92
21111--21207	30	3.3	29	77	7	106	35	29	16	18	1.93
21324--21952	49	12.5	49	79	6	578	23	25	17	33	1.97
21324--21907	101	5.8	101	88	2	786	23	25	18	33	1.97
22777--22849	29	2.6	27	76	16	76	46	2	1	49	1.24
25801--25874	38	1.9	38	97	0	139	43	9	18	28	1.81
28368--28397	13	2.3	13	100	0	60	36	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28347--28413	33	2.0	33	88	5	100	35	19	13	31	1.90
28464--28488	13	1.9	13	100	0	50	32	16	16	36	1.90
30636--30688	20	2.7	20	75	16	56	37	0	22	39	1.54
30810--30835	13	2.0	13	100	0	52	38	15	15	30	1.88
37864--37904	20	2.0	20	95	0	73	43	9	17	29	1.80
40318--40555	79	3.0	78	79	6	264	28	25	13	33	1.93
40487--40603	51	2.3	52	83	5	141	29	28	11	30	1.91
40410--40683	130	2.1	129	83	6	340	28	26	12	32	1.92
40540--40896	157	2.3	159	83	5	422	27	23	13	36	1.92
40318--40839	287	1.8	286	83	5	703	27	25	13	33	1.93
40540--40861	79	4.1	79	82	3	391	27	24	14	33	1.94
42900--42947	4	11.8	4	91	4	78	22	2	0	75	0.91

Tables:   1

The End!