genome.fa.s845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold845
Parameters: 2 7 7 80 10 50 1000
Length:  129140

Tables:   1   2   

This is table  1  of  2  ( 125 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2733--2770	7	5.6	7	85	14	53	89	10	0	0	0.49
2734--2770	12	2.9	14	80	19	53	89	10	0	0	0.49
2739--2770	12	2.7	12	90	0	55	90	9	0	0	0.45
4019--4405	28	13.6	28	76	17	313	29	33	16	21	1.95
4306--4368	32	2.0	32	87	3	92	31	31	17	19	1.95
4430--4937	63	7.9	63	76	18	428	31	34	20	13	1.92
4430--4937	32	15.8	32	78	14	430	31	34	20	13	1.92
6114--6159	20	2.4	19	79	17	58	32	43	0	23	1.54
6114--6161	19	2.5	18	75	24	53	33	41	0	25	1.55
16944--16982	19	2.1	19	100	0	78	28	0	46	25	1.53
17558--17632	20	3.8	20	80	3	80	40	12	13	34	1.81
17555--17632	40	2.0	39	87	2	111	39	12	12	34	1.82
23812--23960	28	5.3	28	90	3	158	22	30	16	30	1.96
23893--24400	28	18.3	28	87	2	672	24	32	13	28	1.94
23890--24400	111	4.6	110	87	3	688	24	32	13	28	1.94
24402--24966	32	17.6	32	82	5	586	31	30	16	22	1.96
25693--25731	7	5.3	7	82	11	51	82	2	0	15	0.79
25688--25734	16	2.9	16	80	20	62	80	2	0	17	0.80
25677--25727	23	2.2	24	92	3	86	80	3	0	15	0.86
28704--28858	69	2.2	69	85	2	195	32	17	9	40	1.81
32780--32812	16	2.1	16	100	0	66	18	6	33	42	1.75
37594--37618	13	1.9	13	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37784--37826	19	2.1	20	87	12	61	23	6	2	67	1.27
38620--38693	23	3.1	22	70	26	62	54	0	0	45	1.00
38672--38733	30	2.1	30	81	6	72	48	0	0	51	1.00
38678--38739	32	1.9	32	83	6	81	50	0	0	50	1.00
38706--38749	20	2.3	20	80	7	56	54	0	0	45	0.99
39576--39628	26	2.0	26	86	13	74	49	0	0	50	1.00
40457--40490	7	4.7	7	96	3	59	41	2	0	55	1.15
47181--47210	12	2.5	12	88	0	51	50	0	0	50	1.00
47665--47704	14	2.8	16	78	21	52	62	0	0	37	0.95
49416--49452	19	1.9	19	94	0	65	45	2	0	51	1.15
54220--54281	26	2.4	25	76	10	63	53	0	0	46	1.00
54216--54263	13	3.7	13	77	0	51	50	0	0	50	1.00
54467--54523	27	2.2	25	78	9	62	56	0	0	43	0.99
55569--55614	19	2.4	18	82	10	56	36	2	2	58	1.22
55744--55788	23	2.0	23	90	0	72	26	4	6	62	1.39
56227--56271	22	2.0	22	86	0	63	57	2	0	40	1.11
56823--56871	22	2.2	22	85	10	64	38	0	4	57	1.18
56851--56994	73	2.0	72	87	1	207	39	3	6	50	1.44
57651--57701	19	2.7	19	84	0	66	33	0	0	66	0.92
57698--57739	20	2.0	21	86	4	59	47	0	2	50	1.14
57707--57752	14	3.4	14	79	8	51	50	0	2	47	1.13
59532--59636	52	2.0	52	98	0	201	21	21	13	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61970--62047	23	3.4	23	66	7	59	26	7	15	50	1.71
61970--62063	46	2.0	46	97	0	179	31	6	13	47	1.68
62449--62479	15	2.1	14	94	5	53	70	0	0	29	0.87
62453--62491	8	5.0	8	81	6	53	56	0	0	43	0.99
62987--63032	18	2.7	18	80	6	51	39	0	4	56	1.19
63193--63226	15	2.2	16	89	5	52	29	2	0	67	1.05
65112--65236	65	1.9	65	90	0	196	36	21	16	26	1.94
65870--65894	12	2.1	12	100	0	50	24	16	16	44	1.86
67474--67509	17	2.0	17	89	10	54	61	2	0	36	1.11
68204--68246	23	1.9	22	90	4	68	46	0	0	53	1.00
69577--69631	25	2.2	25	83	9	67	56	0	1	41	1.10
69801--69866	18	3.7	16	86	8	69	66	1	3	28	1.15
69809--69866	18	3.2	17	87	9	71	67	1	3	27	1.17
69802--69878	18	4.2	19	79	11	63	62	1	2	33	1.17
69870--69927	27	2.2	26	84	9	73	55	0	0	44	0.99
71199--71256	28	2.0	29	83	6	73	51	0	0	48	1.00
72465--72504	20	2.0	20	95	0	71	50	10	17	22	1.76
73954--74060	52	2.0	53	85	5	146	33	26	17	22	1.96
74918--75008	33	2.8	33	93	0	155	45	7	7	39	1.62
74991--75024	2	17.0	2	100	0	68	50	0	0	50	1.00
75100--75155	12	4.6	12	76	10	51	62	3	1	32	1.23
76441--76499	31	2.0	29	81	15	68	45	6	6	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77411--77448	3	12.7	3	100	0	76	31	0	0	68	0.90
77534--77573	19	2.1	19	86	13	55	42	0	0	57	0.98
77991--78016	13	2.0	13	100	0	52	76	0	0	23	0.78
80129--80213	11	8.1	11	71	19	56	30	1	2	65	1.12
80341--80394	8	6.9	8	72	19	51	46	0	1	51	1.11
80333--80399	31	2.1	33	88	5	102	46	0	1	52	1.09
80327--80380	14	3.7	14	75	15	56	46	0	1	51	1.11
80345--80453	5	22.2	5	66	20	52	38	0	0	59	1.10
80344--80429	19	4.5	19	71	12	61	40	0	1	58	1.06
80391--80447	24	2.4	24	88	8	82	33	0	0	66	0.92
80376--80458	19	4.6	18	73	14	73	34	1	0	63	1.02
80701--80787	38	2.5	33	76	16	93	60	2	0	36	1.09
81584--81631	24	2.0	24	87	0	69	52	0	6	41	1.27
82671--82713	16	2.7	17	79	13	56	44	4	0	51	1.22
85146--85192	23	2.0	24	92	8	80	40	2	4	53	1.32
85136--85195	22	2.6	23	82	15	79	43	1	6	48	1.39
85857--85914	5	11.6	5	77	14	57	77	0	15	6	0.97
86383--86422	18	2.2	19	86	4	55	27	2	0	70	1.01
87906--87936	14	2.2	14	100	0	62	35	0	0	64	0.94
87902--87981	33	2.5	33	84	7	96	40	0	0	60	0.97
87913--88063	33	4.5	33	74	13	121	39	1	0	58	1.11
87927--88063	18	7.9	17	70	21	72	40	1	0	57	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88011--88057	19	2.6	18	80	6	58	36	0	0	63	0.94
90620--90653	16	2.1	17	94	5	61	35	0	0	64	0.94
91518--91579	22	2.7	22	85	5	79	58	0	0	41	0.98
93098--93127	2	15.0	2	92	0	51	50	3	0	46	1.18
93094--93127	8	4.2	8	96	0	50	50	5	0	44	1.26
93132--93198	21	3.2	20	72	8	62	44	0	8	46	1.35
94879--94930	28	1.9	28	84	7	72	57	0	1	40	1.10
95376--95422	23	2.1	23	84	4	60	42	21	4	31	1.72
96177--96215	19	2.0	19	85	5	51	51	0	0	48	1.00
96611--96653	17	2.5	17	88	0	68	41	0	0	58	0.98
96623--96661	17	2.3	17	86	8	53	35	0	2	61	1.10
96925--96981	15	3.9	14	76	14	62	56	7	1	35	1.37
98367--98411	18	2.5	18	85	7	56	46	0	0	53	1.00
98361--98419	21	2.9	21	78	12	68	47	0	0	52	1.00
98376--98418	22	2.0	22	90	4	70	51	0	0	48	1.00
98547--98643	29	3.4	27	71	14	79	62	0	1	36	1.02
98560--98596	20	1.9	19	89	10	58	62	0	0	37	0.96
98547--98642	28	3.4	29	79	13	85	62	0	1	36	1.02
98880--98923	22	2.0	22	90	0	70	54	0	0	45	0.99
98879--98915	15	2.5	15	80	20	51	51	0	0	48	1.00
99097--99142	24	1.9	24	90	0	74	43	0	4	52	1.21
99515--99573	20	3.0	20	75	9	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100031--100072	14	3.1	14	86	6	52	64	0	0	35	0.94
100305--100353	18	2.7	18	81	9	55	36	0	0	63	0.95
100311--100373	28	2.2	28	86	5	83	33	1	0	65	1.03
100592--100641	16	3.1	16	81	16	59	58	0	0	42	0.98
101088--101152	25	2.8	23	76	17	64	52	1	0	46	1.10
102454--102505	27	1.9	27	84	0	68	57	0	0	42	0.98
103796--103823	13	2.2	13	100	0	56	28	14	17	39	1.89
103776--103841	33	2.0	33	88	5	98	30	16	13	39	1.87
104445--104587	73	2.0	73	100	0	286	32	21	14	30	1.94
116208--116255	24	2.0	24	91	0	78	22	18	14	43	1.87

Tables:   1   2