Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold849
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27668
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Found at i:7903 original size:52 final size:52
Alignment explanation
Indices: 7808--7927 Score: 197
Period size: 52 Copynumber: 2.3 Consensus size: 52
7798 AAAAGTTGCT
*
7808 TGCATGTATCGATACATTTAATAGTTGTATCGATACATCTGGGCAAATTTACC
1 TGCATGTATCGATACATTTAATAGATGTATCGATACATCTGGGCAAA-TTACC
* *
7861 TGCATGTATCGATACATTTTATA-ATGTATCGATACATCTGGGCAAATTGCC
1 TGCATGTATCGATACATTTAATAGATGTATCGATACATCTGGGCAAATTACC
7912 TGCATGTATCGATACA
1 TGCATGTATCGATACA
7928 AAGATCAGTG
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
51 20 0.31
52 22 0.34
53 22 0.34
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
TGCATGTATCGATACATTTAATAGATGTATCGATACATCTGGGCAAATTACC
Found at i:7940 original size:51 final size:51
Alignment explanation
Indices: 7803--7947 Score: 186
Period size: 51 Copynumber: 2.8 Consensus size: 51
7793 ATATGAAAAG
*
7803 TTGCTTGCATGTATCGATACATTTAATAGTTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAG-TGTATCGATACATCTGGGCAAAT
* * *
7856 TTACCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA-
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
7907 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
7948 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
50 2 0.02
51 33 0.40
52 22 0.27
53 25 0.30
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:7954 original size:13 final size:13
Alignment explanation
Indices: 7936--7960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7926 CAAAGATCAG
7936 TGTATCGATACAA
1 TGTATCGATACAA
7949 TGTATCGATACA
1 TGTATCGATACA
7961 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:8027 original size:87 final size:84
Alignment explanation
Indices: 7864--8047 Score: 212
Period size: 87 Copynumber: 2.2 Consensus size: 84
7854 ATTTACCTGC
* * *
7864 ATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTGCCTGCATGTATCGATACAA
1 ATGTATCGATACATTTGATAATGTATCGATACATCTGGGCAAATAGCCTACATGTATCGATACAA
*
7929 AGATCAGTGTATCGATACA
66 AAATCAGTGTATCGATACA
* * * *
7948 ATGTATCGATACATTTGAGTAATGTATCGATACATTTTTTGGC-AGTAGCTTACATTGTATCGAT
1 ATGTATCGATACATTTGA-TAATGTATCGATACA--TCTGGGCAAATAGCCTACA-TGTATCGAT
8012 ACAAAAAAAT-A-TGTATCGATACA
62 AC--AAAAATCAGTGTATCGATACA
*
8035 TTGTATCGATACA
1 ATGTATCGATACA
8048 AACATTTTTA
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
84 17 0.20
85 15 0.18
86 7 0.08
87 40 0.47
88 1 0.01
89 5 0.06
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (84 bp):
ATGTATCGATACATTTGATAATGTATCGATACATCTGGGCAAATAGCCTACATGTATCGATACAA
AAATCAGTGTATCGATACA
Found at i:8041 original size:13 final size:13
Alignment explanation
Indices: 8023--8047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8013 CAAAAAAATA
8023 TGTATCGATACAT
1 TGTATCGATACAT
8036 TGTATCGATACA
1 TGTATCGATACA
8048 AACATTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9015 original size:52 final size:53
Alignment explanation
Indices: 8894--9102 Score: 163
Period size: 52 Copynumber: 4.1 Consensus size: 53
8884 AAGTGATAAA
* * * * * ** *
8894 GATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAAAAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G-AAAAG
* *
8949 GATGTCAATGTGCTGATTCAA-GCCAGCTACATTGAACTTAAAGATGGAAAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAG
* * *
9001 GTTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---AAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAG
* * * *
9045 G-TGCCAATGTGCTGATTCAAGGTCGGCTACATTGGACTTAAAGATGGAAAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAG
9097 G-TGCCA
1 GATGCCA
9103 CCGATTTTGT
Statistics
Matches: 125, Mismatches: 19, Indels: 23
0.75 0.11 0.14
Matches are distributed among these distances:
43 32 0.26
44 6 0.05
47 1 0.01
49 1 0.01
52 34 0.27
53 15 0.12
54 19 0.15
55 17 0.14
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (53 bp):
GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAG
Found at i:9059 original size:43 final size:44
Alignment explanation
Indices: 8997--9087 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 44
8987 TAAAGATGGA
*
8997 AAAGGTTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
9041 AAAGG-TGCCAATGTGCTGATTCAAGGTCGGCTACATTGGACTT
1 AAAGGTTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
9084 AAAG
1 AAAG
9088 ATGGAAAAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 38 0.88
44 5 0.12
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
AAAGGTTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:9191 original size:28 final size:29
Alignment explanation
Indices: 9123--9263 Score: 180
Period size: 30 Copynumber: 4.9 Consensus size: 29
9113 GGTCTTCGGA
* *
9123 AAAGGGTGCCACTGATTTGTGGGC-TTTG
1 AAAGGTTGCCACTGACTTGTGGGCTTTTG
9151 -AAGGTTGCCACTGACTTGTGGGCTTTT-
1 AAAGGTTGCCACTGACTTGTGGGCTTTTG
9178 AAAGGTTGCCACTGACTTGTGGGCCTTTTG
1 AAAGGTTGCCACTGACTTGTGGG-CTTTTG
**
9208 AAAAATATGCCACTGACTTGTGGGCTTTTG
1 AAAGGT-TGCCACTGACTTGTGGGCTTTTG
* *
9238 AAAAGGGTGCCACTAACTTGTGGGCT
1 -AAAGGTTGCCACTGACTTGTGGGCT
9264 AAAAAGAGTG
Statistics
Matches: 99, Mismatches: 8, Indels: 10
0.85 0.07 0.09
Matches are distributed among these distances:
27 21 0.21
28 25 0.25
29 5 0.05
30 28 0.28
31 20 0.20
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.32
Consensus pattern (29 bp):
AAAGGTTGCCACTGACTTGTGGGCTTTTG
Found at i:9335 original size:30 final size:30
Alignment explanation
Indices: 9300--9387 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 30
9290 TTACAAAAGA
* * *
9300 AAAAGAGTGCCACGGAGTTGTGGACTTTGG
1 AAAAGAGTGCCACCGACTTGTGGGCTTTGG
*
9330 AAAAGA-TGCCACCGACTTGTGGGCTTCGG
1 AAAAGAGTGCCACCGACTTGTGGGCTTTGG
* * *
9359 AAAAGGGTGCCACTGATTTGTGGGCTTTG
1 AAAAGAGTGCCACCGACTTGTGGGCTTTG
9388 AAGGTTGATG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 24 0.49
30 25 0.51
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (30 bp):
AAAAGAGTGCCACCGACTTGTGGGCTTTGG
Found at i:9380 original size:59 final size:59
Alignment explanation
Indices: 9089--9387 Score: 216
Period size: 59 Copynumber: 5.0 Consensus size: 59
9079 GACTTAAAGA
* * * *
9089 TGGAAAAGGTGCCACCGATTTTGTGGTCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTT
1 TGGAAAAGATGCCACCGA-CTTGTGGGCTTCGGAAAAGGGTGCCACTGACTTGTGGGCTT
* * * ** *
9149 T-G-AAGGTTGCCACTGACTTGTGGGCTT--TTAAAGGTTGCCACTGACTTGTGGGCCTTT
1 TGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGACTTGTGGG-C-TT
* * * ** *
9206 TGAAAAATATGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGC--
1 TGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGACTTGTGGGCTT
* * ** * * * * * * *
9263 T-AAAAAGAGTGCTATAGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAGTTGTGGACTT
1 TGGAAAAGA-TGCCACCGACTTGTGGGCTT-C----GGAAAAGGGTGCCACTGACTTGTGGGCTT
*
9327 TGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTT
1 TGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGACTTGTGGGCTT
9386 TG
1 TG
9388 AAGGTTGATG
Statistics
Matches: 182, Mismatches: 42, Indels: 31
0.71 0.16 0.12
Matches are distributed among these distances:
55 21 0.12
56 7 0.04
57 28 0.15
58 11 0.06
59 49 0.27
60 2 0.01
61 21 0.12
62 20 0.11
63 1 0.01
64 16 0.09
65 6 0.03
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (59 bp):
TGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGACTTGTGGGCTT
Found at i:10832 original size:1 final size:1
Alignment explanation
Indices: 10828--10925 Score: 70
Period size: 1 Copynumber: 98.0 Consensus size: 1
10818 CCGGACCCCC
* * * * * ** * *
10828 TTTTTTTTGTTTTTTTTATTGTTTTTGTTTTTTTGTTTTTTTTTTTTCCTTTTGTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** **
10893 GTTTTTCATTTTTTTCGTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10926 GGAGGACGCC
Statistics
Matches: 75, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 75 1.00
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.86
Consensus pattern (1 bp):
T
Found at i:10858 original size:27 final size:25
Alignment explanation
Indices: 10828--10925 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 25
10818 CCGGACCCCC
10828 TTTTTTTTGTTTTTTTTATTGTTTTTG
1 TTTTTTTT-TTTTTTTTATT-TTTTTG
10855 TTTTTTTGTTTTTTTTT-TTTCCTTTTG
1 TTTTTTT-TTTTTTTTTATTT--TTTTG
*
10882 TTTTTTTTTTGGTTTTTCATTTTTTTCG
1 TTTTTTTTTT--TTTTTTATTTTTTT-G
10910 TTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTT
10926 GGAGGACGCC
Statistics
Matches: 62, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
25 1 0.02
26 10 0.16
27 31 0.50
28 17 0.27
29 3 0.05
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.86
Consensus pattern (25 bp):
TTTTTTTTTTTTTTTTATTTTTTTG
Found at i:10882 original size:45 final size:47
Alignment explanation
Indices: 10832--10921 Score: 141
Period size: 45 Copynumber: 2.0 Consensus size: 47
10822 ACCCCCTTTT
*
10832 TTTTGTTTTTTTTATT-GTTTTT-GTTTTTTT-GTTTTTTTTTTTTCC
1 TTTTGTTTTTTTT-TTGGTTTTTCATTTTTTTCGTTTTTTTTTTTTCC
10877 TTTTGTTTTTTTTTTGGTTTTTCATTTTTTTCGTTTTTTTTTTTT
1 TTTTGTTTTTTTTTTGGTTTTTCATTTTTTTCGTTTTTTTTTTTT
10922 TTTTGGAGGA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
44 2 0.05
45 19 0.46
46 7 0.17
47 13 0.32
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.84
Consensus pattern (47 bp):
TTTTGTTTTTTTTTTGGTTTTTCATTTTTTTCGTTTTTTTTTTTTCC
Found at i:10897 original size:17 final size:16
Alignment explanation
Indices: 10829--10923 Score: 79
Period size: 16 Copynumber: 5.9 Consensus size: 16
10819 CGGACCCCCT
**
10829 TTTTTTTGTTTTTTTTA
1 TTTTTTT-TTTTTTTCG
10846 TTGTTTTTGTTTTTTT-G
1 TT-TTTTT-TTTTTTTCG
*
10863 --TTTTTTTTTTTTCC
1 TTTTTTTTTTTTTTCG
*
10877 TTTTGTTTTTTTTTTGG
1 TTTT-TTTTTTTTTTCG
**
10894 TTTTTCATTTTTTTCG
1 TTTTTTTTTTTTTTCG
10910 TTTTTTTTTTTTTT
1 TTTTTTTTTTTTTT
10924 TTGGAGGACG
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
13 7 0.11
14 5 0.08
16 23 0.36
17 16 0.25
18 13 0.20
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTTTTTTCG
Found at i:20654 original size:10 final size:10
Alignment explanation
Indices: 20639--20665 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
20629 ATGTATCAAG
20639 CAAAAACAAA
1 CAAAAACAAA
20649 CAAAAACAAA
1 CAAAAACAAA
20659 CAAAAAC
1 CAAAAAC
20666 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:24889 original size:52 final size:51
Alignment explanation
Indices: 24804--24927 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
24794 ATATGAAAAG
* *
24804 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
*
24855 TTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA
1 -TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
24907 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
24928 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 21 0.30
52 48 0.70
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA
Found at i:24940 original size:51 final size:51
Alignment explanation
Indices: 24804--24947 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 51
24794 ATATGAAAAG
*
24804 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
24856 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAA-
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
24907 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
24948 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
50 2 0.02
51 34 0.40
52 48 0.57
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:24954 original size:13 final size:13
Alignment explanation
Indices: 24936--24960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24926 CAAAGATCAG
24936 TGTATCGATACAA
1 TGTATCGATACAA
24949 TGTATCGATACA
1 TGTATCGATACA
24961 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:25038 original size:33 final size:33
Alignment explanation
Indices: 25001--25067 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
24991 AGTAGCTTAA
25001 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
25034 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
25067 A
1 A
25068 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:25041 original size:13 final size:13
Alignment explanation
Indices: 25023--25047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25013 CAAAAAAATA
25023 TGTATCGATACAT
1 TGTATCGATACAT
25036 TGTATCGATACA
1 TGTATCGATACA
25048 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:26505 original size:118 final size:117
Alignment explanation
Indices: 26292--26641 Score: 468
Period size: 118 Copynumber: 3.0 Consensus size: 117
26282 GATTGTACAG
* *
26292 GCCGCAGCTATAATCGCTCGTATATTGGCCTAAGTCATTTATTC-GAAAAAGGTTGAATAATCTG
1 GCCGCAGCTATAATCGCTCATATATTGGCCTAAGTCATTTATTCAAAAAAAGGTTGAATAAT-TG
*
26356 CTTCATTTAAGGTTGAGATACAATCTCCCTAATGAAGTGGATAGTTCCCTTTC
65 CTTTATTTAAGGTTGAGATACAATCTCCCTAATGAAGTGGATAGTTCCCTTTC
* *
26409 GCCGCAGCTATGATCGCTCATATATTGGCCTAAGTCATTTATTCAAAAAAAAGTTGAATAACTTG
1 GCCGCAGCTATAATCGCTCATATATTGGCCTAAGTCATTTATTCAAAAAAAGGTTGAATAA-TTG
* *
26474 CTTTATTTAAGGTTGAGATACAATCTCCCTAACGAAGTGGATAGTTCCCTTTG
65 CTTTATTTAAGGTTGAGATACAATCTCCCTAATGAAGTGGATAGTTCCCTTTC
* * ** * * * *
26527 GCCACAGCTATAATCACTCATACGTTGGCCTAAGTCACTTATTTAAAAAATGGTTGAATAATTTA
1 GCCGCAGCTATAATCGCTCATATATTGGCCTAAGTCATTTATTCAAAAAAAGGTTGAATAA-TTG
* * *** *
26592 CTTTGTTTTAGGTTGAGATTTGATCTCCCTAATCAAAGTGGATAGTTCCC
65 CTTTATTTAAGGTTGAGATACAATCTCCCTAAT-GAAGTGGATAGTTCCC
26642 CTTTGGGCAT
Statistics
Matches: 205, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
117 42 0.20
118 147 0.72
119 16 0.08
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (117 bp):
GCCGCAGCTATAATCGCTCATATATTGGCCTAAGTCATTTATTCAAAAAAAGGTTGAATAATTGC
TTTATTTAAGGTTGAGATACAATCTCCCTAATGAAGTGGATAGTTCCCTTTC
Found at i:27583 original size:24 final size:24
Alignment explanation
Indices: 27499--27585 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 24
27489 ATCCAAACTG
** *
27499 TGTTCCAAGAGTTGTCCCAAAGGA
1 TGTTCCAAGAGTCATACCAAAGGA
* * * *
27523 TGTTCCGAGATTCATGCCAAAGGT
1 TGTTCCAAGAGTCATACCAAAGGA
* * *
27547 TGTTCTAGGAGTCATACCAAAAGA
1 TGTTCCAAGAGTCATACCAAAGGA
27571 TGTTCCAAGAGTCAT
1 TGTTCCAAGAGTCAT
27586 GTAAAACGTT
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (24 bp):
TGTTCCAAGAGTCATACCAAAGGA
Done.