genome.fa.s850.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold850
Parameters: 2 7 7 80 10 50 1000
Length:  68376

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2156--2286	51	2.5	53	80	8	151	32	25	9	32	1.87
2270--2345	27	2.8	27	88	9	102	22	34	22	21	1.97
2328--2457	51	2.5	52	81	1	163	27	23	13	35	1.92
2328--2473	52	2.8	51	81	1	166	28	23	12	35	1.91
2629--2696	19	3.9	19	78	21	85	35	11	14	38	1.83
2650--2674	13	1.9	13	100	0	50	36	16	16	32	1.90
2631--2693	32	2.0	32	96	0	117	34	12	15	36	1.86
2736--2761	13	2.0	13	100	0	52	30	15	15	38	1.88
2716--2782	33	2.0	33	88	0	98	26	14	16	41	1.87
5240--5315	27	2.8	27	88	9	102	22	34	22	21	1.97
5131--5519	52	7.4	50	70	14	214	29	26	12	31	1.93
5502--5578	28	2.8	28	87	0	100	23	33	19	23	1.97
5129--5629	263	1.9	263	90	2	801	28	27	13	31	1.94
5453--5657	107	1.9	107	82	5	252	26	28	15	29	1.96
5533--5733	78	2.6	79	84	4	237	24	29	16	29	1.97
18139--18171	13	2.6	13	90	4	50	78	6	15	0	0.93
19169--20017	55	15.0	55	85	7	996	27	27	20	24	1.99
19227--19309	27	3.0	27	60	16	62	28	30	19	21	1.98
19199--20017	226	3.6	228	90	2	1169	27	27	20	24	1.99
19792--19878	26	3.3	26	64	17	70	27	33	18	20	1.96
20552--20619	19	3.9	19	78	21	85	35	11	14	38	1.83
20554--20616	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20573--20597	13	1.9	13	100	0	50	36	16	16	32	1.90
20659--20684	13	2.0	13	100	0	52	30	15	15	38	1.88
20639--20704	33	2.0	32	85	2	87	27	13	16	42	1.86
26643--26744	51	2.0	51	84	5	134	48	13	14	23	1.80
29659--29701	20	2.1	21	86	4	61	34	4	0	60	1.17
38160--38201	22	1.9	22	85	9	59	38	2	2	57	1.25
39158--39188	16	1.9	16	93	0	53	16	6	0	77	0.97
40155--40198	5	9.6	5	76	18	51	59	0	0	40	0.98
40144--40198	14	4.1	14	81	4	60	61	0	0	38	0.96
40155--40198	9	4.8	10	78	18	51	59	0	0	40	0.98
40243--40284	17	2.5	17	76	3	50	57	0	0	42	0.99
40436--40474	2	20.0	2	89	5	62	51	0	2	46	1.14
40800--40849	16	3.1	16	91	5	75	60	0	0	40	0.97
41027--41073	19	2.4	20	89	3	69	29	0	0	70	0.88
41075--41127	15	3.3	17	75	19	60	49	3	0	47	1.19
41062--41127	15	4.1	16	74	18	57	46	3	1	48	1.26
41112--41165	22	2.5	21	74	14	56	40	0	0	59	0.98
41431--41490	9	6.3	9	73	16	50	65	1	1	31	1.13
41446--41496	24	2.1	25	82	10	61	60	1	3	33	1.26
41487--41524	18	2.1	19	85	14	53	44	7	2	44	1.47
41862--41903	19	2.2	20	82	4	50	73	0	7	19	1.05
43634--43658	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44482--44510	5	5.8	5	100	0	58	82	0	0	17	0.66
44889--44942	20	2.9	18	84	13	65	72	1	1	24	1.05
45567--45591	13	1.9	13	100	0	50	92	0	8	0	0.40
45738--45814	24	3.2	23	78	12	84	55	0	1	42	1.07
45738--45825	23	3.7	24	76	11	83	53	0	1	45	1.07
47579--47655	20	3.9	19	76	6	73	33	12	12	40	1.82
47579--47656	40	2.0	39	84	2	102	33	12	14	39	1.84
48559--48613	22	2.4	23	84	6	76	21	7	10	60	1.55
61642--61722	1	81.0	1	76	0	72	87	8	2	1	0.68
61643--61708	25	2.7	24	90	2	105	89	9	1	0	0.55
61641--61701	13	4.9	12	92	7	104	88	11	0	0	0.51
62986--63034	26	1.9	25	91	4	80	28	32	16	22	1.95
63021--64610	28	55.5	28	72	17	966	29	31	17	21	1.96
63047--63246	109	1.8	109	82	12	259	30	31	17	21	1.96
63020--64217	57	21.1	53	72	17	257	29	31	17	22	1.96
63021--64610	58	27.7	55	70	18	755	29	31	17	21	1.96
63506--63907	113	3.6	108	78	15	319	30	31	17	21	1.96
64371--64466	26	3.6	26	78	13	88	26	35	19	18	1.95
64372--64535	26	5.9	27	75	16	86	26	31	20	21	1.98

Tables:   1

The End!