genome.fa.s851.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold851
Parameters: 2 7 7 80 10 50 1000
Length:  223772

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79--120204	158	764.4	158	65	13	28847	36	14	17	31	1.90
1--120350	317	382.4	317	84	5	119207	36	14	17	31	1.90
1797--2272	159	3.0	155	67	15	335	34	14	18	31	1.92
1--42526	619	68.1	613	89	3	51620	36	14	16	31	1.89
1--42526	936	45.4	936	87	3	55447	36	14	16	31	1.89
42489--200814	634	249.7	625	78	10	91792	35	14	17	31	1.91
42533--188569	950	153.6	936	80	8	105005	35	14	17	31	1.91
82321--82696	191	2.0	191	100	0	752	35	17	17	30	1.93
82512--120375	633	59.6	631	82	6	27188	35	14	17	31	1.91
99886--100235	192	1.8	192	83	1	459	36	16	17	29	1.92
105774--106121	192	1.8	192	82	2	448	36	16	17	29	1.92
107863--108210	192	1.8	192	82	2	448	36	16	17	29	1.92
109636--109985	192	1.8	192	83	1	468	36	15	17	30	1.91
120373--122782	317	7.6	317	88	1	3225	35	15	17	31	1.91
122805--124908	318	6.6	318	90	1	3132	35	14	17	31	1.91
122803--124905	952	2.2	952	90	1	3309	35	14	17	31	1.91
124932--146096	317	65.7	317	75	11	8710	35	14	17	31	1.91
130634--131279	221	2.9	221	95	0	1105	36	14	15	32	1.89
131079--134101	159	19.2	157	67	11	1461	35	14	17	31	1.91
139003--141106	318	6.6	318	90	1	3132	35	14	17	31	1.91
139001--141103	952	2.2	952	90	1	3309	35	14	17	31	1.91
144879--145955	159	6.8	155	68	14	646	35	14	17	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146304--146640	171	2.0	171	90	3	536	34	16	18	31	1.93
146529--147000	236	2.0	237	90	1	750	36	15	16	31	1.90
146788--180190	317	105.1	317	84	4	39318	35	15	17	31	1.91
146788--155566	316	27.7	317	90	1	12794	35	14	17	31	1.91
146766--155424	159	54.7	156	67	12	4082	35	14	17	32	1.91
155381--155787	221	1.8	221	94	0	715	36	13	16	33	1.88
155591--156015	159	2.7	157	71	16	379	36	14	16	32	1.89
155625--156108	158	3.1	156	71	15	477	36	14	16	32	1.89
155908--156329	221	1.9	221	92	0	709	36	13	15	33	1.88
156129--157598	318	4.6	317	89	1	2092	35	14	17	32	1.91
156131--157482	159	8.5	155	68	14	749	35	14	17	32	1.91
157839--158167	171	1.9	171	89	3	511	33	15	18	32	1.93
158056--158527	236	2.0	237	90	1	750	35	15	17	31	1.91
158315--208767	317	158.8	317	80	7	33654	35	15	17	31	1.91
180193--188569	952	8.8	949	86	2	11304	35	15	17	31	1.91
191953--192187	127	1.9	126	90	2	373	31	15	17	35	1.91
195381--195615	127	1.9	126	90	2	373	31	15	17	35	1.91
195924--200309	159	27.8	157	65	11	1266	35	14	17	31	1.91
200696--200930	127	1.9	126	90	2	373	31	15	17	35	1.91
204438--204672	127	1.9	126	90	2	373	31	15	17	35	1.91
204981--208745	159	23.8	157	65	13	1085	36	14	17	31	1.90
213729--213860	42	3.1	42	85	2	158	9	42	2	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215690--216172	159	3.0	157	71	16	416	36	16	15	31	1.90
215473--216172	317	2.2	317	89	0	1067	36	15	16	31	1.90
215595--216078	158	3.1	156	71	16	488	37	14	15	32	1.88
216008--216768	305	2.6	290	83	6	1027	36	14	16	32	1.89
216449--223599	317	22.7	317	86	2	9100	36	14	17	32	1.90
216181--223599	952	7.9	951	86	3	9518	36	14	17	32	1.90
220173--223455	159	20.7	159	66	12	1124	36	14	16	31	1.90

Tables:   1

The End!