Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold857
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 84826
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:1514 original size:98 final size:96
Alignment explanation
Indices: 1290--1527 Score: 334
Period size: 98 Copynumber: 2.5 Consensus size: 96
1280 TTGATTGAAG
* * * *
1290 AACGGGGTTAGAGTATCCCCTCAGAGGAATG-GGTTTGAGTGTCCCCGACAATGATAATTTAGGC
1 AACGGGGTTGGAGTATCCCCTCAGAGGAATGAGGTTAGAGTATCCCCAACAATGATAATTTAGGC
* *
1354 AAGAAAAGTTTCAAATCTTGACAAGTTTTAA
66 AAGAAAAGTTTCAAATCTCGACAAGTTTAAA
** * * * *
1385 AACGAAGTTGGAGTATCCCCTCAAAGAAATGAGGTTGGAGTATCCCTAACAATGATAATTTAGGC
1 AACGGGGTTGGAGTATCCCCTCAGAGGAATGAGGTTAGAGTATCCCCAACAATGATAATTTAGGC
1450 AAGAATAAGTTTCAAATCTCGACAAGTTCTAAA
66 AAGAA-AAGTTTCAAATCTCGACAAGTT-TAAA
*
1483 AACGGGGTTGGAGTATCCCCTCGGAGGAATGAGGTTAGAGTATCC
1 AACGGGGTTGGAGTATCCCCTCAGAGGAATGAGGTTAGAGTATCC
1528 TTGATAAATA
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
95 26 0.21
96 34 0.28
97 21 0.17
98 42 0.34
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (96 bp):
AACGGGGTTGGAGTATCCCCTCAGAGGAATGAGGTTAGAGTATCCCCAACAATGATAATTTAGGC
AAGAAAAGTTTCAAATCTCGACAAGTTTAAA
Found at i:3721 original size:31 final size:31
Alignment explanation
Indices: 3679--3785 Score: 119
Period size: 31 Copynumber: 3.5 Consensus size: 31
3669 CATTGAAAAC
3679 TGTATCAATACATTTGGGTAAAAAGACAGAA
1 TGTATCAATACATTTGGGTAAAAAGACAGAA
* * * * **
3710 TGTATCGATACATTGTCGATACATTGA-A-AA
1 TGTATCAATACATT-TGGGTAAAAAGACAGAA
3740 CTGTATCAATACATTTGGGTAAAAAGACAGAA
1 -TGTATCAATACATTTGGGTAAAAAGACAGAA
*
3772 TGTATCGATACATT
1 TGTATCAATACATT
3786 GATGAATGCA
Statistics
Matches: 59, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
30 9 0.15
31 41 0.69
32 9 0.15
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (31 bp):
TGTATCAATACATTTGGGTAAAAAGACAGAA
Found at i:3735 original size:62 final size:62
Alignment explanation
Indices: 3661--3786 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
3651 TAACTAGATG
3661 TGTCGATACATTGAAAACTGTATCAATACATTTGGGTAAAAAGACAGAATGTATCGATACAT
1 TGTCGATACATTGAAAACTGTATCAATACATTTGGGTAAAAAGACAGAATGTATCGATACAT
3723 TGTCGATACATTGAAAACTGTATCAATACATTTGGGTAAAAAGACAGAATGTATCGATACAT
1 TGTCGATACATTGAAAACTGTATCAATACATTTGGGTAAAAAGACAGAATGTATCGATACAT
3785 TG
1 TG
3787 ATGAATGCAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (62 bp):
TGTCGATACATTGAAAACTGTATCAATACATTTGGGTAAAAAGACAGAATGTATCGATACAT
Found at i:3838 original size:24 final size:24
Alignment explanation
Indices: 3811--3890 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 24
3801 ACATTCATTG
*
3811 AAAAATGTATCAATACATCTAGGT
1 AAAAATGTATCGATACATCTAGGT
3835 AAAAGATAGAATGTATCGATACAT-T--G-
1 ---A-A-A-AATGTATCGATACATCTAGGT
3861 AAAAATGTATCGATACATCTAGGT
1 AAAAATGTATCGATACATCTAGGT
3885 AAAAAT
1 AAAAAT
3891 ATGACTTTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 17
0.71 0.02 0.27
Matches are distributed among these distances:
20 15 0.33
21 2 0.04
22 1 0.02
23 2 0.04
24 6 0.13
27 2 0.04
28 1 0.02
29 2 0.04
30 14 0.31
ACGTcount: A:0.47, C:0.10, G:0.15, T:0.28
Consensus pattern (24 bp):
AAAAATGTATCGATACATCTAGGT
Found at i:3873 original size:74 final size:75
Alignment explanation
Indices: 3731--3878 Score: 226
Period size: 74 Copynumber: 2.0 Consensus size: 75
3721 ATTGTCGATA
* * * **
3731 CATTGAAAACTGTATCAATACATTTGGGTAAAAAGACAGAATGTATCGATACATTGATGAATGCA
1 CATTGAAAAATGTATCAATACATCTAGGTAAAAAGACAGAATGTATCGATACATTGAAAAATGCA
3796 TCGATACATT
66 TCGATACATT
* *
3806 CATTGAAAAATGTATCAATACATCTAGGT-AAAAGATAGAATGTATCGATACATTGAAAAATGTA
1 CATTGAAAAATGTATCAATACATCTAGGTAAAAAGACAGAATGTATCGATACATTGAAAAATGCA
3870 TCGATACAT
66 TCGATACAT
3879 CTAGGTAAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
74 40 0.61
75 26 0.39
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (75 bp):
CATTGAAAAATGTATCAATACATCTAGGTAAAAAGACAGAATGTATCGATACATTGAAAAATGCA
TCGATACATT
Found at i:4879 original size:33 final size:30
Alignment explanation
Indices: 4834--4902 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
4824 CTAGCGACAT
*
4834 TGGG-TTTAGA-AGGGTTACCACCAACTTGTG
1 TGGGCTTTAGAGAAGGTTACCACCAAC-T-TG
* *
4864 TGGGCTTTAGAGAAGGTTGCCACTAACTTG
1 TGGGCTTTAGAGAAGGTTACCACCAACTTG
4894 TGGGCTTTA
1 TGGGCTTTA
4903 AAAGGATGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 15 0.44
31 7 0.21
32 12 0.35
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (30 bp):
TGGGCTTTAGAGAAGGTTACCACCAACTTG
Found at i:4915 original size:28 final size:28
Alignment explanation
Indices: 4862--5443 Score: 489
Period size: 28 Copynumber: 20.5 Consensus size: 28
4852 CACCAACTTG
* *
4862 TGTGGGCTTTAGAGAAGGTTGCCACTAACT
1 TGTGGGCTTTA-A-AAGGATGCCACTGACT
*
4892 TGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
4920 TGTGGG-TTTCGAAATGG-TGCCACTAACT
1 TGTGGGCTTT--AAAAGGATGCCACTGACT
* * *
4948 TGTGGGCTTCAAAAAGG-TGCCACTAACC
1 TGTGGGCTT-TAAAAGGATGCCACTGACT
* * * *
4976 TGTGGGCTTTGAGAGGGTGCCATTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
5004 TATGGGCTTTGAAA-GAGTGCCACTGACT
1 TGTGGGCTTTAAAAGGA-TGCCACTGACT
* * *
5032 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
5060 TGTGGGCTTCAAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
5088 TATGGGCTTTGAAAGG-GGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * * *
5115 TGTGGACATTGAAAGGGTACCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* **
5143 TGTGGGCTTTAAGAGAGGTTGCCACCAACTTT
1 TGTGGGCTTTAA-A-AGGATGCCACTGAC--T
** *
5175 TGTGGGC-TTAATGGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
5202 TGTGGACTTTGAGAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * * * *
5231 TGTGAGTTTTGAGAAGAATGCCACTGACA
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
*
5260 TGTGGGCTTTAAAAGGGTGCCACCT-ACT
1 TGTGGGCTTTAAAAGGATGCCA-CTGACT
5288 TGTGGGCTTTGAAAA-GATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * *
5316 TGTGGGCTGTGAAAGGATGCCACCGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
5344 TGTGGGCTTT-GAAGAGATGCCACTTACT
1 TGTGGGCTTTAAAAG-GATGCCACTGACT
*
5372 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
5400 TGTAGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
*
5429 TGTGGACTTTGAAAA
1 TGTGGGCTTT-AAAA
5444 AGGTCGTATT
Statistics
Matches: 451, Mismatches: 80, Indels: 43
0.79 0.14 0.07
Matches are distributed among these distances:
27 46 0.10
28 271 0.60
29 101 0.22
30 21 0.05
31 4 0.01
32 8 0.02
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTGACT
Found at i:4980 original size:84 final size:83
Alignment explanation
Indices: 4862--5442 Score: 569
Period size: 84 Copynumber: 6.8 Consensus size: 83
4852 CACCAACTTG
* *
4862 TGTGGGCTTTAGAGAAGGTTGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGATTTGTGGG-
1 TGTGGGCTTT-GAAAAGG-TGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGC
*
4926 TTTCGAAATGGTGCCACTAACT
64 TTT-GAAA-GGTGCCACTGACT
** * * * * * *
4948 TGTGGGCTTCAAAAAGGTGCCACTAACCTGTGGGCTTTGAGAGGGTGCCATTGACTTATGGGCTT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
5013 TGAAAGAGTGCCACTGACT
66 TGAAAG-GTGCCACTGACT
* * * *
5032 TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTCAAAAGGGTGCCACTGACTTATGGGCTT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
*
5097 TGAAAGGGGCCACTGACT
66 TGAAAGGTGCCACTGACT
* * * * * * **
5115 TGTGGACATTGAAAGGGTACCACTGACTTGTGGGCTTTAAGAGAGGTTGCCACCAACTTTTGTGG
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTAA-A-AGGATGCCACTGAC--TTGTGG
*
5180 GC-TT-AATGGGGTGCCACTGACT
62 GCTTTGAA--AGGTGCCACTGACT
* * * * * * *
5202 TGTGGACTTTGAGAAGGATGCCACTAACTTGTGAGTTTTGAGAAGAATGCCACTGACATGTGGGC
1 TGTGGGCTTTGAAAAGG-TGCCACTAACTTGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGC
*
5267 TTTAAAAGGGTGCCACCT-ACT
64 TTTGAAA-GGTGCCA-CTGACT
* * * * *
5288 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTGTGAAAGGATGCCACCGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
* *
5353 TGAAGAGATGCCACTTACT
66 TGAA-AGGTGCCACTGACT
* * * *
5372 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTAGGCTTTGAGAAGGATGCCACTGACTTGTGGAC
1 TGTGGGCTTTGAAAAGG-TGCCACTAACTTGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGGC
5436 TTTGAAA
64 TTTGAAA
5443 AAGGTCGTAT
Statistics
Matches: 411, Mismatches: 66, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
83 53 0.13
84 182 0.44
85 73 0.18
86 37 0.09
87 47 0.11
88 18 0.04
89 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (83 bp):
TGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTT
TGAAAGGTGCCACTGACT
Found at i:12848 original size:49 final size:49
Alignment explanation
Indices: 12780--13290 Score: 434
Period size: 49 Copynumber: 10.6 Consensus size: 49
12770 ATGTTAAAAA
* * * *
12780 TGCCAATATGCTGATTCAAGGCCAACGATATCGGGCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * *
12829 TGCCAATGTACTGATTCAAGGCTAGCGACATTAGTCTTAAAGAATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAG-ATAAAGG
*
12879 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * * *
12918 TGCCAATGTGCTGATTCAAGGCTAACAACATTGGTCTTAAAGGTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * ** * * * *
12967 TGCCAGTATGCTGATTCAAGGCTAGCGATATCAGACTTAAGGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * * *
13016 TGCCAATGTCCTGATTCAAGGCCGGTGACATTGGTCTTAAAGGTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * **
13065 TGCCAATATGCTGATTCAAGGCCAGCGATATCGGAC-TAAAGGATAAAAA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAA-GATAAAGG
* * ** * * *
13114 TGCCAATGTACTGATTCAAGATCGGCGACATTGGTCTTAAAGGTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * * *
13163 TGCCAATATGATGATTCAAGGCCAGCGATATCGGACTTAAGGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * * *
13212 TGCCAATATACTGGTTCAAGG-TAGCGACATTGGTTTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
*
13260 TGCCAATATGCAGATTCAAGGCCAGCGATAT
1 TGCCAATATGCTGATTCAAGGCCAGCGATAT
13291 CAGACTTGCG
Statistics
Matches: 352, Mismatches: 96, Indels: 28
0.74 0.20 0.06
Matches are distributed among these distances:
39 31 0.09
40 1 0.00
43 1 0.00
45 1 0.00
48 42 0.12
49 236 0.67
50 40 0.11
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
Found at i:13092 original size:98 final size:98
Alignment explanation
Indices: 12918--13398 Score: 535
Period size: 98 Copynumber: 5.1 Consensus size: 98
12908 ATTGGGCTTG
* * * * *
12918 TGCCAATGTGCTGATTCAAGGCTAACAACATTGGTCTTAAAGGTAAAGGTGCCAGTATGCTGATT
1 TGCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGATT
*
12983 CAAGGCTAGCGATATCAGACTTAAGGATGAAGA
66 CAAGGCCAGCGATATCAGACTTAAGGATGAAGA
* * *
13016 TGCCAATGTCCTGATTCAAGGCCGGTGACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGATT
1 TGCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGATT
* * * *
13081 CAAGGCCAGCGATATCGGACTAAAGGATAAAAA
66 CAAGGCCAGCGATATCAGACTTAAGGATGAAGA
** * *
13114 TGCCAATGTACTGATTCAAGATCGGCGACATTGGTCTTAAAGGTAAAGGTGCCAATATGATGATT
1 TGCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGATT
*
13179 CAAGGCCAGCGATATCGGACTTAAGGATGAAGA
66 CAAGGCCAGCGATATCAGACTTAAGGATGAAGA
* * * * * * *
13212 TGCCAATATACTGGTTCAAGG-TAGCGACATTGGTTTTAAAGATGAAGGTGCCAATATGCAGATT
1 TGCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGATT
*
13276 CAAGGCCAGCGATATCAGACTT--GCGCT--A-A
66 CAAGGCCAGCGATATCAGACTTAAG-GATGAAGA
* * * *
13305 TG----TG--CTGATTCAAGGCCAGCAACATTAGTCTTAGA-G-ACAAGGTGCCAATATGTTGAT
1 TGCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGGTA-AAGGTGCCAATATGCTGAT
** *
13362 TCAAGGCCAGCGATATTGGACTT-A-GAAGAAGA
65 TCAAGGCCAGCGATATCAGACTTAAGGATGAAGA
13394 TGCCA
1 TGCCA
13399 CCAACTTGTG
Statistics
Matches: 326, Mismatches: 47, Indels: 26
0.82 0.12 0.07
Matches are distributed among these distances:
86 1 0.00
87 48 0.15
88 15 0.05
89 4 0.01
93 3 0.01
94 1 0.00
95 1 0.00
96 2 0.01
97 57 0.17
98 194 0.60
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (98 bp):
TGCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATCAGACTTAAGGATGAAGA
Found at i:13180 original size:196 final size:186
Alignment explanation
Indices: 12727--13398 Score: 735
Period size: 196 Copynumber: 3.6 Consensus size: 186
12717 TTGAAGAAGA
* ** * * * **
12727 ATGCCAATGTGCTGAGACAAGGCCAACAACATTGGGCTTAGGAATGTTAAAAATGCCAATATGCT
1 ATGCCAATGTACTGATTCAAGGCTAACAACATTGGTCTTA--AA-GGTAAAGGTGCCAATATGCT
* * * *
12792 GATTCAAGGCCAACGATATCGGGCTTAAAGATGAAGGTGCCAATGTACTGATTCAAGGCTAGCGA
63 GATTCAAGGCCAGCGATATCGGACTTAAGGATGAAGATGCCAATGTACTGATTCAAGGCTAGCGA
* * *
12857 CATTAGTCTTAAAGAATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
128 CATTGGTCTTAAAG-ATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTT
* * *
12917 GTGCCAATGTGCTGATTCAAGGCTAACAACATTGGTCTTAAAGGTAAAGGTGCCAGTATGCTGAT
1 ATGCCAATGTACTGATTCAAGGCTAACAACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGAT
* * * ** *
12982 TCAAGGCTAGCGATATCAGACTTAAGGATGAAGATGCCAATGTCCTGATTCAAGGCCGGTGACAT
66 TCAAGGCCAGCGATATCGGACTTAAGGATGAAGATGCCAATGTACTGATTCAAGGCTAGCGACAT
*
13047 TGGTCTTAAAGGTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTAAAGGAT
131 TGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGACT------T
* ** *
13109 AAAAATGCCAATGTACTGATTCAA-GATCGGCGACATTGGTCTTAAAGGTAAAGGTGCCAATATG
1 ----ATGCCAATGTACTGATTCAAGGCT-AACAACATTGGTCTTAAAGGTAAAGGTGCCAATATG
* * *
13173 ATGATTCAAGGCCAGCGATATCGGACTTAAGGATGAAGATGCCAATATACTGGTTCAAGG-TAGC
61 CTGATTCAAGGCCAGCGATATCGGACTTAAGGATGAAGATGCCAATGTACTGATTCAAGGCTAGC
* * * *
13237 GACATTGGTTTTAAAGATGAAGGTGCCAATATGCAGATTCAAGGCCAGCGATATCAGACTT
126 GACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTT
** * * * * * * *
13298 GCGCTAATGTGCTGATTCAAGGCCAGCAACATTAGTCTTAGA-G-ACAAGGTGCCAATATGTTGA
1 ATGCCAATGTACTGATTCAAGGCTAACAACATTGGTCTTAAAGGTA-AAGGTGCCAATATGCTGA
* *
13361 TTCAAGGCCAGCGATATTGGACTT-A-GAAGAAGATGCCA
65 TTCAAGGCCAGCGATATCGGACTTAAGGATGAAGATGCCA
13399 CCAACTTGTG
Statistics
Matches: 412, Mismatches: 57, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
182 12 0.03
183 2 0.00
184 41 0.10
185 30 0.07
186 42 0.10
187 84 0.20
188 2 0.00
189 1 0.00
190 35 0.08
192 1 0.00
195 58 0.14
196 104 0.25
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (186 bp):
ATGCCAATGTACTGATTCAAGGCTAACAACATTGGTCTTAAAGGTAAAGGTGCCAATATGCTGAT
TCAAGGCCAGCGATATCGGACTTAAGGATGAAGATGCCAATGTACTGATTCAAGGCTAGCGACAT
TGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGGACTT
Found at i:13507 original size:30 final size:30
Alignment explanation
Indices: 13407--13590 Score: 179
Period size: 29 Copynumber: 6.3 Consensus size: 30
13397 CACCAACTTG
13407 TGTGGGCTTTTG-AAAGGGTTG-CAC-CAACT
1 TGTGGGCTTTTGAAAAGGG-TGCCACTC-ACT
* * * *
13436 TGTGTGCTTTTG--AAGGTTGGCACTGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTCACT
13464 TGTGGGC-TTTGAAAAGGGTGCCA-TCATCT
1 TGTGGGCTTTTGAAAAGGGTGCCACTCA-CT
* *
13493 TGTGGGCTTTTGAAATGGGTGCCACTGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTCACT
*
13523 TGTGGGC-TTTGAAAGGGGTGCCA-TCGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTC-ACT
* * *
13552 TGTGGGCTTTTGAAATGAGTGCCACTGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTCACT
13582 TGTGGGCTT
1 TGTGGGCTT
13591 AAAAGGAGAA
Statistics
Matches: 131, Mismatches: 14, Indels: 19
0.80 0.09 0.12
Matches are distributed among these distances:
27 6 0.05
28 19 0.15
29 53 0.40
30 50 0.38
31 3 0.02
ACGTcount: A:0.17, C:0.16, G:0.33, T:0.33
Consensus pattern (30 bp):
TGTGGGCTTTTGAAAAGGGTGCCACTCACT
Found at i:13536 original size:59 final size:58
Alignment explanation
Indices: 13407--13590 Score: 241
Period size: 59 Copynumber: 3.2 Consensus size: 58
13397 CACCAACTTG
* * * *
13407 TGTGGGCTTTTG-AAAGGGTTG-CACCAACTTGTGTGCTTTTG-AA-GGTTGGCACTGACT
1 TGTGGGC-TTTGAAAAGGG-TGCCATC-ACTTGTGGGCTTTTGAAATGGGTGCCACTGACT
13464 TGTGGGCTTTGAAAAGGGTGCCATCATCTTGTGGGCTTTTGAAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCATCA-CTTGTGGGCTTTTGAAATGGGTGCCACTGACT
* *
13523 TGTGGGCTTTGAAAGGGGTGCCATCGACTTGTGGGCTTTTGAAATGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCATC-ACTTGTGGGCTTTTGAAATGGGTGCCACTGACT
13582 TGTGGGCTT
1 TGTGGGCTT
13591 AAAAGGAGAA
Statistics
Matches: 115, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
56 7 0.06
57 29 0.25
58 2 0.02
59 76 0.66
60 1 0.01
ACGTcount: A:0.17, C:0.16, G:0.33, T:0.33
Consensus pattern (58 bp):
TGTGGGCTTTGAAAAGGGTGCCATCACTTGTGGGCTTTTGAAATGGGTGCCACTGACT
Found at i:13719 original size:32 final size:32
Alignment explanation
Indices: 13570--14105 Score: 265
Period size: 27 Copynumber: 17.7 Consensus size: 32
13560 TTTGAAATGA
* * * *
13570 GTGCCACTGACTTGTGGGCTTAAAAGGAGAAAG
1 GTGCCACAGAGTTGTGGACTTAAAAAGA-AAAG
*
13603 ATGCCAC-GAAGTTGTGGACTT-AAAAG----G
1 GTGCCACAG-AGTTGTGGACTTAAAAAGAAAAG
**
13630 GTGCCATGGAGTTGTGGACTT-AAAAG----G
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
* * * * *
13657 GTGCCA-TGAAGTTGTGGGCTTAGAAGGAAAAT
1 GTGCCACAG-AGTTGTGGACTTAAAAAGAAAAG
* *
13689 GTGCCATAGAGTCGTGGACTTAAAAAGAAAAG
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
* * * **
13721 GTGCCACGGAGTTGTGGGCTTGACAGGGAAAA-
1 GTGCCACAGAGTTGTGGACTT-AAAAAGAAAAG
* *
13753 GTGCCACGGAGTTGTGGA-TTTAAAAGAAAAAG
1 GTGCCACAGAGTTGTGGACTTAAAAAG-AAAAG
* * *
13785 GTTCCACGGAGTTGTGGACTTGAAAAGAAAAG
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
*
13817 GTGCCACAGAGTTGTGGACTTAAAAGGAACAAG
1 GTGCCACAGAGTTGTGGACTTAAAAAGAA-AAG
* *
13850 ATGCCACATAGTTGTGGACTT-AAAAG----G
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
* * * *
13877 GTGCCACGGAGTTATGGACTT--ACAG---GG
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
** * *
13904 GTGCCATGGAGTTGTGGACTT--ACAG---GG
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
*
13931 GTGCCACAGAGTTGTGGGCTTAAAAGAGAAAAG
1 GTGCCACAGAGTTGTGGACTTAAAA-AGAAAAG
* *
13964 AGTGCCACGGAGTCGTGGACTTTGAAGAAA-AAAA-
1 -GTGCCACAGAGTTGTGGAC-TT-AA-AAAGAAAAG
* *
13998 ATGCCACGGAGTTGTGGACTT-AAAAG----G
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
* * *
14025 GT-CCACAAAGTTGTGGATTTTGAAAAGAAAAAG
1 GTGCCACAGAGTTGTGGA-CTTAAAAAG-AAAAG
*
14058 GTGCCACGGAGTTGTGGACTT-AAAAG----G
1 GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
14085 GTGCCACAGAGTTGTGGACTT
1 GTGCCACAGAGTTGTGGACTT
14106 TGAAAAGAGA
Statistics
Matches: 405, Mismatches: 63, Indels: 76
0.74 0.12 0.14
Matches are distributed among these distances:
26 17 0.04
27 127 0.31
28 9 0.02
29 4 0.01
30 5 0.01
31 6 0.01
32 121 0.30
33 76 0.19
34 29 0.07
35 6 0.01
36 3 0.01
37 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.22
Consensus pattern (32 bp):
GTGCCACAGAGTTGTGGACTTAAAAAGAAAAG
Found at i:13741 original size:64 final size:62
Alignment explanation
Indices: 13569--14166 Score: 296
Period size: 64 Copynumber: 9.9 Consensus size: 62
13559 TTTTGAAATG
* * * * * * *
13569 AGTGCCACTGACTTGTGGGCTTAAAAGGAGAAAGATGCCACGAAGTTGTGGACTT-AA--AAG
1 AGTGCCACAGAGTTGTGGACTTAAAAAGA-AAAGGTGCCACGGAGTTGTGGACTTGAAGGAAA
* ** * * *
13629 GGTGCCATGGAGTTGTGGACTT-AAAAG----GGTGCCATGAAGTTGTGGGCTTAGAAGGAAA
1 AGTGCCACAGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTT-GAAGGAAA
* * *
13687 ATGTGCCATAGAGTCGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTGACAGGGAAA
1 A-GTGCCACAGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTGA-A-GGAAA
* * * *
13752 AGTGCCACGGAGTTGTGGA-TTTAAAAGAAAAAGGTTCCACGGAGTTGTGGACTTGAAAAGAAA
1 AGTGCCACAGAGTTGTGGACTTAAAAAG-AAAAGGTGCCACGGAGTTGTGGACTTG-AAGGAAA
* * ** *
13815 AGGTGCCACAGAGTTGTGGACTTAAAAGGAACAAGATGCCACATAGTTGTGGACTT-AA--AAG
1 A-GTGCCACAGAGTTGTGGACTTAAAAAGAA-AAGGTGCCACGGAGTTGTGGACTTGAAGGAAA
* * * * * *
13876 GGTGCCACGGAGTTATGGACTT--ACAG---GGGTGCCATGGAGTTGTGGACTT-ACAGG---
1 AGTGCCACAGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTGA-AGGAAA
* * * *
13930 GGTGCCACAGAGTTGTGGGCTTAAAAGAGAAAAGAGTGCCACGGAGTCGTGGACTTTGAAGAAAA
1 AGTGCCACAGAGTTGTGGACTTAAAA-AGAAAAG-GTGCCACGGAGTTGTGGAC-TTGAAG--GA
13995 AA
61 AA
* * ** * *
13997 AATGCCACGGAGTTGTGGACTT-AAAAG----GGT-CCACAAAGTTGTGGATTTTGAAAAGAAAA
1 AGTGCCACAGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGA-CTTG--AAGGAAA
* * *
14056 AGGTGCCACGGAGTTGTGGACTT-AAAAG----GGTGCCACAGAGTTGTGGACTTTGAA--AAG
1 A-GTGCCACAGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGAC-TTGAAGGAAA
** * * * *
14113 AGATGCCACTA-AGTTGTGGACTTTGAAA-AAAAGATGCCACTGAGTCGTAGACTT
1 AG-TGCCAC-AGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTT
14167 TGGGACAAGA
Statistics
Matches: 425, Mismatches: 66, Indels: 94
0.73 0.11 0.16
Matches are distributed among these distances:
54 57 0.13
55 1 0.00
56 4 0.01
57 23 0.05
58 7 0.02
59 45 0.11
60 74 0.17
61 56 0.13
62 4 0.01
63 17 0.04
64 81 0.19
65 35 0.08
66 3 0.01
67 18 0.04
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.22
Consensus pattern (62 bp):
AGTGCCACAGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTGAAGGAAA
Found at i:14063 original size:181 final size:176
Alignment explanation
Indices: 13716--14166 Score: 436
Period size: 181 Copynumber: 2.5 Consensus size: 176
13706 ACTTAAAAAG
* * *
13716 AAAA-GGTGCCACGGAGTTGTGGGCTTGACAGGGAAAAGTGCCACGGAGTTGTGGATTTAAAAGA
1 AAAAGGGTGCCACGGAGTTGTGGACTTGACAGGG---AGTGCCACAGAGTTGTGGACTTAAAAGA
* * **
13780 AAAAGGTTCCACGGAGTTGTGGACTTGAAAAGAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGA
63 AAAAGGTGCCACGGAGTCGTGGACTTGAAAAGAAAAAATGCCACAGAGTTGTGGACTTAAAAGG-
*
13845 ACAAGATGCCACATAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTT
127 ---AGATGCCACAAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTT
* * * *
13898 ACAGGGGTGCCATGGAGTTGTGGACTT-ACAGGG-GTGCCACAGAGTTGTGGGCTTAAAAGAGAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTGACAGGGAGTGCCACAGAGTTGTGGACTTAAAAGA-AA
*
13961 AAGAGTGCCACGGAGTCGTGGACTTTGAAGAA-AAAAAATGCCACGGAGTTGTGGACTTAAAAGG
65 AAG-GTGCCACGGAGTCGTGGAC-TTGAA-AAGAAAAAATGCCACAGAGTTGTGGACTTAAAAGG
* *
14025 -G-T-CCACAAAGTTGTGGATTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
127 AGATGCCACAAAGTTGTGGA-CTT-AAAAG-----GGTGCCACGGAGTTATGGACTT
* ** **
14079 AAAAGGGTGCCACAGAGTTGTGGACTTTGA-AAAGAGATGCCACTA-AGTTGTGGACTTTGAA-A
1 AAAAGGGTGCCACGGAGTTGTGGAC-TTGACAGGGAG-TGCCAC-AGAGTTGTGGACTTAAAAGA
* * *
14141 AAAAGATGCCACTGAGTCGTAGACTT
63 AAAAGGTGCCACGGAGTCGTGGACTT
14167 TGGGACAAGA
Statistics
Matches: 225, Mismatches: 27, Indels: 36
0.78 0.09 0.12
Matches are distributed among these distances:
174 14 0.06
175 3 0.01
176 6 0.03
178 24 0.11
179 5 0.02
180 19 0.08
181 92 0.41
182 19 0.08
183 23 0.10
184 19 0.08
185 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (176 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTGACAGGGAGTGCCACAGAGTTGTGGACTTAAAAGAAAA
AGGTGCCACGGAGTCGTGGACTTGAAAAGAAAAAATGCCACAGAGTTGTGGACTTAAAAGGAGAT
GCCACAAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTT
Found at i:14064 original size:93 final size:94
Alignment explanation
Indices: 13631--14078 Score: 255
Period size: 96 Copynumber: 4.9 Consensus size: 94
13621 CTTAAAAGGG
* ** * *
13631 TGCCATGGAGTTGTGGACTTAAAAGGGTGCCATGAAGTTGTGGGCTTAGAAG-GAAAA-TGTGCC
1 TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAAAGTTGTGGGCTTAAAAGAGAAAAGAGTGCC
** *
13694 ATAGAGTCGTGGAC-TT-AA-AAAGAAAAGG
66 ACGGAGTCGTGGACTTTGAAGAAA-AAAA-A
* ** ** **
13722 TGCCACGGAGTTGTGGGCTTGACAGGGAAAAGTGCCACGGAGTTGTGGATTTAAAAGA-AAAAG-
1 TGCCACGGAGTTGTGGACTT-A-A---AAGGGTGCCACAAAGTTGTGGGCTTAAAAGAGAAAAGA
* * **
13785 GTTCCACGGAGTTGTGGAC-TTGAA-AAGAAAAGG
61 GTGCCACGGAGTCGTGGACTTTGAAGAA-AAAAAA
* * *
13818 TGCCACAGAGTTGTGGACTTAAAAGGAACAAGATGCCACATAGTTGTGGACTT-AAA-AG----G
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G-TGCCACAAAGTTGTGGGCTTAAAAGAGAAAAG
** ***
13877 -GTGCCACGGAGTTATGGAC-TT-ACAG-----GGG
60 AGTGCCACGGAGTCGTGGACTTTGA-AGAAAAAAAA
* * * *
13905 TGCCATGGAGTTGTGGACTTACAGGGGTGCCACAGAGTTGTGGGCTTAAAAGAGAAAAGAGTGCC
1 TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAAAGTTGTGGGCTTAAAAGAGAAAAGAGTGCC
13970 ACGGAGTCGTGGACTTTGAAGAAAAAAAA
66 ACGGAGTCGTGGACTTTGAAGAAAAAAAA
**
13999 TGCCACGGAGTTGTGGACTTAAAAGGGT-CCACAAAGTTGTGGATTTTGAAAAGA-AAAAG-GTG
1 TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAAAGTTGTGG-GCTT-AAAAGAGAAAAGAGTG
*
14061 CCACGGAGTTGTGGACTT
64 CCACGGAGTCGTGGACTT
14079 AAAAGGGTGC
Statistics
Matches: 281, Mismatches: 42, Indels: 66
0.72 0.11 0.17
Matches are distributed among these distances:
81 18 0.06
82 4 0.01
83 2 0.01
87 25 0.09
88 17 0.06
89 4 0.01
90 1 0.00
91 21 0.07
92 22 0.08
93 34 0.12
94 33 0.12
95 8 0.03
96 67 0.24
97 24 0.09
98 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.22
Consensus pattern (94 bp):
TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAAAGTTGTGGGCTTAAAAGAGAAAAGAGTGCC
ACGGAGTCGTGGACTTTGAAGAAAAAAAA
Found at i:14120 original size:30 final size:30
Alignment explanation
Indices: 13788--14359 Score: 211
Period size: 30 Copynumber: 18.9 Consensus size: 30
13778 GAAAAAGGTT
* *
13788 CCACGGAGTTGTGGAC-TTGAAAAGAAAAGGTG
1 CCACAGAGTTGTGGACTTTGAAAAG---AGATG
** *
13820 CCACAGAGTTGTGGACTTAAAAGGAACAAGATG
1 CCACAGAGTTGTGGACTTTGAA--AA-GAGATG
* *
13853 CCACATAGTTGTGGAC-TT-AAAAG-GGTG
1 CCACAGAGTTGTGGACTTTGAAAAGAGATG
* * * * *
13880 CCACGGAGTTATGGAC-TT--ACAGGGGTG
1 CCACAGAGTTGTGGACTTTGAAAAGAGATG
** * * *
13907 CCATGGAGTTGTGGAC-TT--ACAGGGGTG
1 CCACAGAGTTGTGGACTTTGAAAAGAGATG
* *
13934 CCACAGAGTTGTGGGC-TTAAAAGAGAAAAGAGTG
1 CCACAGAGTTGTGGACTTTGAAA-AG---AGA-TG
* * * *
13968 CCACGGAGTCGTGGACTTTGAAGAAAAAAAATG
1 CCACAGAGTTGTGGACTTT---GAAAAGAGATG
* *
14001 CCACGGAGTTGTGGAC-TT-AAAAG-GGT-
1 CCACAGAGTTGTGGACTTTGAAAAGAGATG
* * *
14027 CCACAAAGTTGTGGATTTTGAAAAGAAAAAGGTG
1 CCACAGAGTTGTGGACTTTGAAAAG----AGATG
* *
14061 CCACGGAGTTGTGGAC-TT-AAAAG-GGTG
1 CCACAGAGTTGTGGACTTTGAAAAGAGATG
14088 CCACAGAGTTGTGGACTTTGAAAAGAGATG
1 CCACAGAGTTGTGGACTTTGAAAAGAGATG
*
14118 CCACTA-AGTTGTGGACTTTGAAAAAAAGATG
1 CCAC-AGAGTTGTGGACTTTG-AAAAGAGATG
* * * * *
14149 CCACTGAGTCGTAGACTTTGGGACA-AGATG
1 CCACAGAGTTGTGGACTTT-GAAAAGAGATG
** * *
14179 CCACTA-AGTCATGGACTTGGAAAAAAAGGATG
1 CCAC-AGAGTTGTGGACTTTG-AAAAGA-GATG
* *
14211 CCACTA-AGTCGTGGACTTAGAAAAGAGATG
1 CCAC-AGAGTTGTGGACTTTGAAAAGAGATG
* *
14241 CCACTGAGTTGTGGACTTTGAAGAAAAGATG
1 CCACAGAGTTGTGGACTTTGAA-AAGAGATG
* * * *
14272 CCACTGAATCGTGGACTTTGAGAAA-AGACG
1 CCACAGAGTTGTGGACTTTGA-AAAGAGATG
* * ** *
14302 CCACTA-AGTCGTAGACTTTGGGAAGAGACG
1 CCAC-AGAGTTGTGGACTTTGAAAAGAGATG
* * * *
14332 CCACTGAGTCGTAGACTTTGAGAAGAGA
1 CCACAGAGTTGTGGACTTTGAAAAGAGA
14360 GATTTGAAGA
Statistics
Matches: 431, Mismatches: 68, Indels: 84
0.74 0.12 0.14
Matches are distributed among these distances:
26 16 0.04
27 84 0.19
28 11 0.03
29 11 0.03
30 116 0.27
31 63 0.15
32 47 0.11
33 45 0.10
34 30 0.07
35 4 0.01
37 1 0.00
38 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (30 bp):
CCACAGAGTTGTGGACTTTGAAAAGAGATG
Found at i:14151 original size:61 final size:60
Alignment explanation
Indices: 14086--14352 Score: 268
Period size: 61 Copynumber: 4.4 Consensus size: 60
14076 CTTAAAAGGG
* *
14086 TGCCACAGAGTTGTGGACTTTGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAAAGA
1 TGCCACAGAGTCGTGGACTTTGAAAA-AGATGCCACTAAGTCGTGGACTTTGAAAAAAAGA
* * * * * *
14147 TGCCACTGAGTCGTAGACTTTGGGACAAGATGCCACTAAGTCATGGACTTGGAAAAAAAGGA
1 TGCCACAGAGTCGTGGACTTT-GAAAAAGATGCCACTAAGTCGTGGACTTTGAAAAAAA-GA
* * * *
14209 TGCCACTA-AGTCGTGGACTTAGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAGA
1 TGCCAC-AGAGTCGTGGACTTTGAAAA-AGATGCCACTAAGTCGTGGACTTTGAAAAAAAGA
* * * * ** *
14270 TGCCACTGAATCGTGGACTTTGAGAAAAGACGCCACTAAGTCGTAGACTTTG-GGAAGAGA
1 TGCCACAGAGTCGTGGACTTTGA-AAAAGATGCCACTAAGTCGTGGACTTTGAAAAAAAGA
* * *
14330 CGCCACTGAGTCGTAGACTTTGA
1 TGCCACAGAGTCGTGGACTTTGA
14353 GAAGAGAGAT
Statistics
Matches: 170, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
60 26 0.15
61 92 0.54
62 52 0.31
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (60 bp):
TGCCACAGAGTCGTGGACTTTGAAAAAGATGCCACTAAGTCGTGGACTTTGAAAAAAAGA
Found at i:14228 original size:123 final size:123
Alignment explanation
Indices: 14079--14311 Score: 360
Period size: 123 Copynumber: 1.9 Consensus size: 123
14069 TTGTGGACTT
* * *
14079 AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAA
1 AAAAGGATGCCACAGAGTCGTGGACTTAGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAA
* * * *
14144 AGATGCCACTGAGTCGTAGACTTTGGGACAAGATGCCACTAAGTCATGGACTTGGAAA
66 AGATGCCACTGAATCGTAGACTTTGAGAAAAGACGCCACTAAGTCATGGACTTGGAAA
* *
14202 AAAAGGATGCCACTA-AGTCGTGGACTTAGAAAAGAGATGCCACTGAGTTGTGGACTTTGAAGAA
1 AAAAGGATGCCAC-AGAGTCGTGGACTTAGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAA
*
14266 AAGATGCCACTGAATCGTGGACTTTGAGAAAAGACGCCACTAAGTC
65 AAGATGCCACTGAATCGTAGACTTTGAGAAAAGACGCCACTAAGTC
14312 GTAGACTTTG
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
123 98 0.99
124 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (123 bp):
AAAAGGATGCCACAGAGTCGTGGACTTAGAAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAA
AGATGCCACTGAATCGTAGACTTTGAGAAAAGACGCCACTAAGTCATGGACTTGGAAA
Found at i:14361 original size:123 final size:123
Alignment explanation
Indices: 14087--14362 Score: 344
Period size: 123 Copynumber: 2.3 Consensus size: 123
14077 TTAAAAGGGT
* *
14087 GCCACAGAGTTGTGGACTTTGA-AAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAAAGATGCC
1 GCCACTGAGTCGTGGACTTTGAGAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAAAGATGCC
* * * * * *
14151 ACTGAGTCGTAGACTTTGGGACAAGATGCCACTAAGTCATGGACTTGGAAAAAAAGGAT
66 ACTGAATCGTAGACTTTGAGAAAAGACGCCACTAAGTCATAGACTTGG-AAAAAAGGAC
* * * *
14210 GCCACTAAGTCGTGGACTTAGA-AAAGAGATGCCACTGAGTTGTGGACTTTGAAGAAAAGATGCC
1 GCCACTGAGTCGTGGACTTTGAGAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAAAGATGCC
* * * *
14274 ACTGAATCGTGGACTTTGAGAAAAGACGCCACTAAGTCGTAGACTTTGG-GAAGA-GAC
66 ACTGAATCGTAGACTTTGAGAAAAGACGCCACTAAGTCATAGAC-TTGGAAAAAAGGAC
*
14331 GCCACTGAGTCGTAGACTTTGAGAAGAGAGAT
1 GCCACTGAGTCGTGGACTTTGAGAA-AGAGAT
14363 TTGAAGAATT
Statistics
Matches: 131, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
121 21 0.16
122 5 0.04
123 101 0.77
124 4 0.03
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (123 bp):
GCCACTGAGTCGTGGACTTTGAGAAAGAGATGCCACTAAGTTGTGGACTTTGAAAAAAAGATGCC
ACTGAATCGTAGACTTTGAGAAAAGACGCCACTAAGTCATAGACTTGGAAAAAAGGAC
Found at i:15660 original size:11 final size:10
Alignment explanation
Indices: 15635--15685 Score: 57
Period size: 11 Copynumber: 4.7 Consensus size: 10
15625 TTGCACTCTT
15635 TTTTTTTTATG
1 TTTTTTTT-TG
*
15646 TTTTTATTTG
1 TTTTTTTTTG
15656 TTTTTGTTTTG
1 TTTTT-TTTTG
15667 TTTTTTTTTTG
1 -TTTTTTTTTG
15678 TGTTTTTT
1 T-TTTTTT
15686 GTTCTCCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 8 0.23
11 22 0.63
12 5 0.14
ACGTcount: A:0.04, C:0.00, G:0.12, T:0.84
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:15665 original size:16 final size:15
Alignment explanation
Indices: 15633--15688 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 15
15623 CTTTGCACTC
*
15633 TTTTTTT-TTTATGT
1 TTTTTTTGTTTTTGT
15647 TTTTATTTGTTTTTGT
1 TTTT-TTTGTTTTTGT
*
15663 TTTGTTTTTTTTTTGT
1 TTT-TTTTGTTTTTGT
*
15679 GTTTTTTGTT
1 TTTTTTTGTT
15689 CTCCTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 4 0.11
15 9 0.26
16 21 0.60
17 1 0.03
ACGTcount: A:0.04, C:0.00, G:0.12, T:0.84
Consensus pattern (15 bp):
TTTTTTTGTTTTTGT
Found at i:26248 original size:13 final size:13
Alignment explanation
Indices: 26230--26255 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26220 TACAGCAAGT
26230 ATGTATCGATACA
1 ATGTATCGATACA
26243 ATGTATCGATACA
1 ATGTATCGATACA
26256 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:28527 original size:21 final size:21
Alignment explanation
Indices: 28494--28538 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
28484 TTGCAAGTTG
*
28494 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
28516 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
28536 AAA
1 AAA
28539 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:30362 original size:15 final size:15
Alignment explanation
Indices: 30342--30372 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30332 TAAAAATGTC
*
30342 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
30357 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
30372 C
1 C
30373 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:32466 original size:20 final size:20
Alignment explanation
Indices: 32387--32466 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
32377 AATGTCCAAA
*
32387 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
32407 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
32432 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
32452 TTGTATCGATACATT
1 ATGTATCGATACATT
32467 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:32470 original size:13 final size:13
Alignment explanation
Indices: 32452--32490 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
32442 ACATTTTTCT
32452 TTGTATCGATACA
1 TTGTATCGATACA
32465 TTGTATCGATACA
1 TTGTATCGATACA
*
32478 CTGTATCGATACA
1 TTGTATCGATACA
32491 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:32635 original size:21 final size:21
Alignment explanation
Indices: 32611--32657 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
32601 AAATCTTTTG
32611 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
32632 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
32652 CAAAAT
1 CAAAAT
32658 CAGCATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:32654 original size:20 final size:19
Alignment explanation
Indices: 32613--32655 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
32603 ATCTTTTGCA
32613 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
32633 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
32653 AAA
1 AAA
32656 ATCAGCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:34297 original size:29 final size:29
Alignment explanation
Indices: 34255--34314 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
34245 GATATGTGCA
34255 AATAAATTTTTGATATGAATTACTTGATT
1 AATAAATTTTTGATATGAATTACTTGATT
34284 AATAAATTTTTGATATGAATTACTTGATT
1 AATAAATTTTTGATATGAATTACTTGATT
34313 AA
1 AA
34315 GGAGGAGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (29 bp):
AATAAATTTTTGATATGAATTACTTGATT
Found at i:35060 original size:13 final size:13
Alignment explanation
Indices: 35042--35067 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35032 TACAGCAAGT
35042 ATGTATCGATACA
1 ATGTATCGATACA
35055 ATGTATCGATACA
1 ATGTATCGATACA
35068 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:37067 original size:15 final size:15
Alignment explanation
Indices: 37028--37072 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
37018 GTGTATCGAC
*
37028 GATTTTGTGGTGGGT
1 GATTTTGTGGTGGAT
* **
37043 AATTAGGTGGTGGAT
1 GATTTTGTGGTGGAT
37058 GATTTTGTGGTGGAT
1 GATTTTGTGGTGGAT
37073 TTGGTAGAAT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (15 bp):
GATTTTGTGGTGGAT
Found at i:44591 original size:98 final size:98
Alignment explanation
Indices: 44422--44758 Score: 498
Period size: 98 Copynumber: 3.4 Consensus size: 98
44412 TTTTTGATTG
* * * *
44422 AAAAATGGGGTTGGAGTATCCCCTCCGAGGAATGGGGTTGGAGTGTCCCCGACAATGATAATTTA
1 AAAAACGGAGTTGGAGTATCCCCTCAGAGGAATGAGGTTGGAGTGTCCCCGACAATGATAATTTA
*
44487 GGCAAGAATAAGTTTCAAATCTTGACAAGTTTT
66 GGCAAGAATAAGTTTCAAATCTCGACAAGTTTT
* * *
44520 AAAAACGGAGTTGGAGTATCCCCTCGGAGAAATGGGGTTGGAGTGTCCCCGACAATGATAATTTA
1 AAAAACGGAGTTGGAGTATCCCCTCAGAGGAATGAGGTTGGAGTGTCCCCGACAATGATAATTTA
*
44585 GGCAAGAATAAGTTTCAAATCTCGACAAGGTTT
66 GGCAAGAATAAGTTTCAAATCTCGACAAGTTTT
* * * *
44618 AAAAACAGAGTTGGAGTATCCCCTCAGAGGAATGAGGTTGGAATG-CCTTCGATAATGATAATTT
1 AAAAACGGAGTTGGAGTATCCCCTCAGAGGAATGAGGTTGGAGTGTCC-CCGACAATGATAATTT
* * *
44682 AGGCACGAATATGTTTCAAATCTCAACAAGTTTT
65 AGGCAAGAATAAGTTTCAAATCTCGACAAGTTTT
*
44716 AAAAACGG-GTTGGAGAATCCCCTCAGAGGAATGAGGTTGGAGT
1 AAAAACGGAGTTGGAGTATCCCCTCAGAGGAATGAGGTTGGAGT
44759 ATCCTCAATG
Statistics
Matches: 218, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
97 35 0.16
98 183 0.84
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (98 bp):
AAAAACGGAGTTGGAGTATCCCCTCAGAGGAATGAGGTTGGAGTGTCCCCGACAATGATAATTTA
GGCAAGAATAAGTTTCAAATCTCGACAAGTTTT
Found at i:55951 original size:13 final size:13
Alignment explanation
Indices: 55933--55957 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55923 CATTTTACTA
55933 TGTATCGATACAT
1 TGTATCGATACAT
55946 TGTATCGATACA
1 TGTATCGATACA
55958 GTGTCCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:55955 original size:33 final size:33
Alignment explanation
Indices: 55913--55977 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
55903 TTGGGCACAA
* * *
55913 TGTATCGATACATTTTACTATGTATCGATACAT
1 TGTATCGATACAGTGTACCATGTATCGATACAT
*
55946 TGTATCGATACAGTGTCCCATGTATCGATACA
1 TGTATCGATACAGTGTACCATGTATCGATACA
55978 AACAGTGATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAGTGTACCATGTATCGATACAT
Found at i:56085 original size:83 final size:83
Alignment explanation
Indices: 55946--56144 Score: 364
Period size: 83 Copynumber: 2.4 Consensus size: 83
55936 ATCGATACAT
*
55946 TGTATCGATACAGTGTCCCATGTATCGATACAAACAGTGATAAGGTAGCTATGGCTAGTTTCGTG
1 TGTATCGATACAATGTCCCATGTATCGATACAAACAGTGATAAGGTAGCTATGGCTAGTTTCGTG
56011 TATCGATACAATTGAGTG
66 TATCGATACAATTGAGTG
56029 TGTATCGATACAATGTCCCATGTATCGATACAAACAGTGATAAGGTAGCTATGGCTAGTTTCGTG
1 TGTATCGATACAATGTCCCATGTATCGATACAAACAGTGATAAGGTAGCTATGGCTAGTTTCGTG
56094 TATCGATACAATTGAGTG
66 TATCGATACAATTGAGTG
**
56112 TGTATCGATACAATG-AGCATGTATCGATACAAA
1 TGTATCGATACAATGTCCCATGTATCGATACAAA
56145 GCATAATGTA
Statistics
Matches: 113, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
82 16 0.14
83 97 0.86
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (83 bp):
TGTATCGATACAATGTCCCATGTATCGATACAAACAGTGATAAGGTAGCTATGGCTAGTTTCGTG
TATCGATACAATTGAGTG
Found at i:56116 original size:20 final size:19
Alignment explanation
Indices: 56090--56143 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
56080 TGGCTAGTTT
56090 CGTGTATCGATACAATTGAG
1 CGTGTATCGATACAA-TGAG
*
56110 TGTGTATCGATACAATGAG
1 CGTGTATCGATACAATGAG
*
56129 CATGTATCGATACAA
1 CGTGTATCGATACAA
56144 AGCATAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (19 bp):
CGTGTATCGATACAATGAG
Found at i:56155 original size:20 final size:19
Alignment explanation
Indices: 56092--56162 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
56082 GCTAGTTTCG
* **
56092 TGTATCGATACAATTGAGTG
1 TGTATCGATACAA-AGAGAA
* *
56112 TGTATCGATACAATGAGCA
1 TGTATCGATACAAAGAGAA
*
56131 TGTATCGATACAAAGCATAA
1 TGTATCGATACAAAG-AGAA
*
56151 TGTATGGATACA
1 TGTATCGATACA
56163 TCTGGATGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
19 18 0.41
20 26 0.59
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (19 bp):
TGTATCGATACAAAGAGAA
Found at i:57252 original size:19 final size:19
Alignment explanation
Indices: 57219--57275 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
57209 TTTGATCGAT
** *
57219 ACATTGTATTAATACATGT
1 ACATTGTATCGATACATGG
*
57238 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
57257 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
57276 AAATTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:57349 original size:33 final size:33
Alignment explanation
Indices: 57304--57372 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
57294 CTTCCACTAT
*
57304 TTGTATCGATACATGGTAT-AA-TGCATCGATACA
1 TTGTATCAATACAT-G-ATGAATTGCATCGATACA
*
57337 TTGTATCAATACATGATGAATTGTATCGATACA
1 TTGTATCAATACATGATGAATTGCATCGATACA
57370 TTG
1 TTG
57373 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 2 0.06
32 3 0.09
33 27 0.84
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.36
Consensus pattern (33 bp):
TTGTATCAATACATGATGAATTGCATCGATACA
Found at i:57545 original size:22 final size:22
Alignment explanation
Indices: 57500--57545 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
57490 TAGAAACACA
* *
57500 AGCATTCAACCTCATATATGTT
1 AGCATTCAACCTCATAAATATT
57522 AGCATTCAAGCCT-ATAAATATT
1 AGCATTCAA-CCTCATAAATATT
57544 AG
1 AG
57546 TTTCCAACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (22 bp):
AGCATTCAACCTCATAAATATT
Found at i:59966 original size:66 final size:66
Alignment explanation
Indices: 59746--60380 Score: 229
Period size: 66 Copynumber: 9.6 Consensus size: 66
59736 AAATCTATTG
* * * * * * *
59746 ACTTAGGTTTTGCCTTTGTCACCCTTAGTTGACTTTACCAGTTTTGTCCTGCTCAACCCCTTTTC
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAGTTTTGTCTTGGTCAAACTCTTTTC
59811 A
66 A
* * * * ** *** * *
59812 ACTTAGGTTTTGCCCTTGTCACCTTTAATTAACTTTATTGGTTTCACCTTGGTCAATCTCCGTTT
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAGTTTTGTCTTGGTCAAACT-CTTTT
*
59877 -G
65 CA
** * * * * *
59878 ACTTAAATTCTGCCAC-AATCACCTTTAGTTGACTTTATCAATTTTGTATTGGTCAAACTCTTTT
1 ACTTAGGTTTTGCC-CTAGTCACCCTTAGTTGACTTTATCAGTTTTGTCTTGGTCAAACTCTTTT
59942 CA
65 CA
* * * ** * * * *
59944 ACTTAGGTTATGCCCTAGTCACCCTTACTTGACTTTATCGGTTTTACCTTGATTAACCCCTTTTC
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAGTTTTGTCTTGGTCAAACTCTTTTC
*
60009 G
66 A
* * * * * * * * * ** *
60010 ACCTAGGTTTTTCCCTGGTCAACTTTAGTTAACTTTATCGGTTTTGCCCTCATTAATAC-CTTTT
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAGTTTTGTCTTGGTCAA-ACTCTTTT
60074 CA
65 CA
** * * * * * * * * *
60076 ACTTAGGTTCCGTCCTTGTCA-TCTTCAGTTGACTTTATCAATTTTGCCCTAGT-TAACCCTTTA
1 ACTTAGGTTTTGCCCTAGTCACCCTT-AGTTGACTTTATCAGTTTTGTCTTGGTCAAACTCTTT-
*
60139 TCG
64 TCA
** * * * * * * * * * * * *
60142 ACTTAAATTTCGTCTTGGTCACCCTTAGTTGACATCATCAGTTTTGCCCTAGTCAACCTTTTTTT
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAGTTTTGTCTTGGTCAAACTCTTTTC
*
60207 G
66 A
**** * * ** * * * * *
60208 ACTTAGGTTCCATCATGGTCACCCTTAGTTGACTTTATTGGTTTTTTTCCTAGTCAATCCCTTTT
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAG-TTTTGTCTTGGTCAAACTC-TTT
*
60273 TCG
64 TCA
* * * * * * *
60276 ACTTAGGTTTTGCCTTGGCCACCCTTAGTTGACTCTATC-GATTTTGCCTTGGTCAACCTTTTTT
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAG-TTTTGTCTTGGTCAAAC-TCTTT
**
60340 TTT
64 TCA
* * * *
60343 ACTTAGGTTCTGCCTTGGTCACCTTTAGTTGACTTTAT
1 ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTAT
60381 TGATTTCATC
Statistics
Matches: 428, Mismatches: 128, Indels: 25
0.74 0.22 0.04
Matches are distributed among these distances:
64 2 0.00
65 12 0.03
66 299 0.70
67 79 0.18
68 36 0.08
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (66 bp):
ACTTAGGTTTTGCCCTAGTCACCCTTAGTTGACTTTATCAGTTTTGTCTTGGTCAAACTCTTTTC
A
Found at i:60308 original size:134 final size:134
Alignment explanation
Indices: 60123--60382 Score: 337
Period size: 134 Copynumber: 1.9 Consensus size: 134
60113 TCAATTTTGC
* * *
60123 CCTAGTTAACCCTTTATCGACTTAAATTTCGTCTTGGTCACCCTTAGTTGACATC-ATC-AGTTT
1 CCTAGTCAACCCTTTATCGACTTAAATTTCGCCTTGGCCACCCTTAGTTGAC-TCTATCGA-TTT
*
60186 TGCCCTAGTCAACC-TTTTTTTGACTTAGGTTCCATCATGGTCACCCTTAGTTGACTTTATTGGT
64 TGCCCTAGTCAACCTTTTTTTTGACTTAGGTTCCACCATGGTCACCCTTAGTTGACTTTATTGGT
60250 TTTTTT
129 TTTTTT
* ** *
60256 CCTAGTCAATCCCTTTTTCGACTTAGGTTTTGCCTTGGCCACCCTTAGTTGACTCTATCGATTTT
1 CCTAGTCAA-CCCTTTATCGACTTAAATTTCGCCTTGGCCACCCTTAGTTGACTCTATCGATTTT
* * * ** * *
60321 GCCTTGGTCAACCTTTTTTTTTACTTAGGTTCTGCCTTGGTCACCTTTAGTTGACTTTATTG
65 GCCCTAGTCAACCTTTTTTTTGACTTAGGTTCCACCATGGTCACCCTTAGTTGACTTTATTG
60383 ATTTCATCTT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
133 10 0.09
134 55 0.51
135 43 0.40
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.44
Consensus pattern (134 bp):
CCTAGTCAACCCTTTATCGACTTAAATTTCGCCTTGGCCACCCTTAGTTGACTCTATCGATTTTG
CCCTAGTCAACCTTTTTTTTGACTTAGGTTCCACCATGGTCACCCTTAGTTGACTTTATTGGTTT
TTTT
Found at i:60394 original size:67 final size:66
Alignment explanation
Indices: 60193--60401 Score: 220
Period size: 67 Copynumber: 3.1 Consensus size: 66
60183 TTTTGCCCTA
*** * * * *
60193 GTCAACCTTTTTTTGACTTAGGTTCCATCATGGTCACCCTTAGTTGACTTTATTGGTTTTTTTCC
1 GTCAACCTTTTTTTGACTTAGGTTCTGCCTTGGTCACCCTTAGTTGACTTTATT-GATTTTATCT
*
60258 TA
65 TG
* * * * * * **
60260 GTCAATCCCTTTTTCGACTTAGGTTTTGCCTTGGCCACCCTTAGTTGACTCTATCGATTTTGCCT
1 GTCAA-CCTTTTTTTGACTTAGGTTCTGCCTTGGTCACCCTTAGTTGACTTTATTGATTTTATCT
60325 TG
65 TG
* * *
60327 GTCAACCTTTTTTTTTACTTAGGTTCTGCCTTGGTCACCTTTAGTTGACTTTATTGATTTCATCT
1 GTCAACC-TTTTTTTGACTTAGGTTCTGCCTTGGTCACCCTTAGTTGACTTTATTGATTTTATCT
60392 TG
65 TG
60394 GTCAACCT
1 GTCAACCT
60402 CTCTAACTTG
Statistics
Matches: 114, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
66 3 0.03
67 72 0.63
68 39 0.34
ACGTcount: A:0.15, C:0.23, G:0.16, T:0.46
Consensus pattern (66 bp):
GTCAACCTTTTTTTGACTTAGGTTCTGCCTTGGTCACCCTTAGTTGACTTTATTGATTTTATCTT
G
Found at i:61330 original size:15 final size:15
Alignment explanation
Indices: 61310--61348 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
61300 TTTCACAGTA
61310 TCATGAATA-TTATGC
1 TCATGAA-AGTTATGC
61325 TCATGAAAGTTATGC
1 TCATGAAAGTTATGC
61340 TCATGAAAG
1 TCATGAAAG
61349 GTTTCCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (15 bp):
TCATGAAAGTTATGC
Found at i:63455 original size:13 final size:13
Alignment explanation
Indices: 63437--63462 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63427 GCCAAGGAAA
63437 TGTATCGATACAT
1 TGTATCGATACAT
63450 TGTATCGATACAT
1 TGTATCGATACAT
63463 CTAGAGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:63512 original size:50 final size:51
Alignment explanation
Indices: 63447--63563 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
63437 TGTATCGATA
*
63447 CATTGTATCGATACATCTAGAGT-TTTTA-CCAAATGTATCGATACATTGA-T
1 CATTGTATCGATACATCTAG-GTATTTTACCCAAATGTATCAATACATT-ATT
* *
63497 CATTGTATCGGTACATCTAGGTATTTTACCCAGATGTATCAATACATTATT
1 CATTGTATCGATACATCTAGGTATTTTACCCAAATGTATCAATACATTATT
*
63548 CAATGTATCGATACAT
1 CATTGTATCGATACAT
63564 GCAGGAAAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
49 2 0.03
50 25 0.42
51 32 0.54
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (51 bp):
CATTGTATCGATACATCTAGGTATTTTACCCAAATGTATCAATACATTATT
Found at i:67454 original size:154 final size:154
Alignment explanation
Indices: 67018--67698 Score: 623
Period size: 155 Copynumber: 4.4 Consensus size: 154
67008 TATTATTTAG
* * * * * *
67018 AGTCTTTTAGGGTTATCGAGATACTTTCATGTTGAAGGTACATTCTAAGGGTAATTTGGTAATTT
1 AGTCTTTTAGGGTTATCGAGATACTTTCATGTTGAAGGTATACTCTAAAGGCATTTTGATAATTT
* * *
67083 TTTTAAAATCGAG-CTCGATATAGTCATCGAGG-TGCTTTTATGCCAAAGGTGTGCATTTAGGAC
66 TTTTAAAATCGAGTC-CGATGTAGTCA-CTAGGATGCTTTTATGCCAAAGGTGTGCATTTAGGAT
* * * *
67146 ATGTTCATTCTTCTATGATCGTTTTCA
129 AGGTTTA-TCTTTTATGATCATTTTCA
* * * *
67173 AGTCCTTTAGGGTTA-CTTAGACACTTTCATGTTAAAGGTATACTCTAAAGGCATTTT-AGTAAT
1 AGTCTTTTAGGGTTATC-GAGATACTTTCATGTTGAAGGTATACTCTAAAGGCATTTTGA-TAAT
* *
67236 TTTTTTAGAA-CTGAGTTCGATGTAGTCACTAGGATG-TTTTCATGCCAAAGGTGTGCATTTAGG
64 TTTTTTAAAATC-GAGTCCGATGTAGTCACTAGGATGCTTTT-ATGCCAAAGGTGTGCATTTAGG
** *
67299 ATAGGTTTATCTTTTGACAATCATTTTCG
127 ATAGGTTTATCTTTT-ATGATCATTTTCA
* * * * * * *
67328 AGTCTTTTAGAGTTATTGAGATACTTTTATGTCGAAGGTGTACTTTAATGGCATTTTGATAA-TT
1 AGTCTTTTAGGGTTATCGAGATACTTTCATGTTGAAGGTATACTCTAAAGGCATTTTGATAATTT
* * * * * *
67392 TTTTAGAATTGAGTCCGATGTAGTCACTAGGTTACTTTTATGCCCAAGGTGTGCACTTAGGATAG
66 TTTTAAAATCGAGTCCGATGTAGTCACTAGGATGCTTTTATGCCAAAGGTGTGCATTTAGGATAG
67457 GTTTATCCTTTTATGATCATTTTCA
131 GTTTAT-CTTTTATGATCATTTTCA
* * * * * * * * *
67482 AGTCTTTTAGGGTGA-CCAGAATACCTTCAGGTGGAAGGTATACCCCAAAGGTATTTTGGTAATT
1 AGTCTTTTAGGGTTATCGAG-ATACTTTCATGTTGAAGGTATACTCTAAAGGCATTTTGATAATT
* * * *
67546 TATTTAAAATCAAGTCCGATGTAGTCACTAGGATGCTTTTATGCCAAATGTATGCA-TTAGGATA
65 TTTTTAAAATCGAGTCCGATGTAGTCACTAGGATGCTTTTATGCCAAAGGTGTGCATTTAGGATA
* * * * *
67610 GGTTCTTTCCTCTAGGATCATTTTCG
130 GGTT-TATCTTTTATGATCATTTTCA
* * * *
67636 AGTCCTTTT-GGGTTACCGTA-ATACTTTCATATCT-AAGGTATA-TCTCAAGGGCATTTTCATA
1 AGT-CTTTTAGGGTTATCG-AGATACTTTCATGT-TGAAGGTATACTCT-AAAGGCATTTTGATA
67697 AT
62 AT
67699 CTTGCATTAG
Statistics
Matches: 423, Mismatches: 83, Indels: 41
0.77 0.15 0.07
Matches are distributed among these distances:
153 3 0.01
154 194 0.46
155 224 0.53
156 2 0.00
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (154 bp):
AGTCTTTTAGGGTTATCGAGATACTTTCATGTTGAAGGTATACTCTAAAGGCATTTTGATAATTT
TTTTAAAATCGAGTCCGATGTAGTCACTAGGATGCTTTTATGCCAAAGGTGTGCATTTAGGATAG
GTTTATCTTTTATGATCATTTTCA
Found at i:67577 original size:309 final size:309
Alignment explanation
Indices: 67017--67613 Score: 715
Period size: 309 Copynumber: 1.9 Consensus size: 309
67007 ATATTATTTA
* * * *
67017 GAGTCTTTTAGGGTTATCGAGATACTTTCATGTTGAAGGTACATTCTAAGGGTAATTTGGTAATT
1 GAGTCTTTTAGAGTTATCGAGATACTTTCATGTCGAAGGTACATTCTAAGGGCAATTTGATAATT
* *
67082 TTTTTAAAATCGAGCTCGATATAGTCATCGAGGTGCTTTTATGCCAAAGGTGTGCATTTAGGACA
66 TTTTTAAAATCGAGCTCGATATAGTCATCGAGGTACTTTTATGCCAAAGGTGTGCACTTAGGACA
* * * * * * * *
67147 TGTTCATTCTTCTATGATCGTTTTCAAGTCCTTTAGGGTTACTTAGACACTTTCATGTTAAAGGT
131 GGTTCATCCTTCTATGATCATTTTCAAGTCCTTTAGGGTGACTCAGACACCTTCAGGTGAAAGGT
* * * * * *
67212 ATACTCTAAAGGCATTTTAGTAATTTTTTTAGAACTGAGTTCGATGTAGTCACTAGGATG-TTTT
196 ATACCCCAAAGGCATTTTAGTAATTTATTTAAAACTAAGTCCGATGTAGTCACTAGGATGCTTTT
*
67276 CATGCCAAAGGTGTGCATTTAGGATAGGTTTATCTTTTGACAATCATTTTC
261 -ATGCCAAAGGTATGCA-TTAGGATAGGTTTATCTTTTGACAATCATTTTC
* * * *
67327 GAGTCTTTTAGAGTTATTGAGATACTTTTATGTCGAAGGTGTAC-TT-TAATGGCATTTTGATAA
1 GAGTCTTTTAGAGTTATCGAGATACTTTCATGTCGAA-G-GTACATTCTAAGGGCAATTTGATAA
* * * * *
67390 -TTTTTTAGAATTGAG-TCCGATGTAGTCA-CTAGGTTACTTTTATGCCCAAGGTGTGCACTTAG
64 TTTTTTTAAAATCGAGCT-CGATATAGTCATCGAGG-TACTTTTATGCCAAAGGTGTGCACTTAG
* * * * * *
67452 GATAGGTTTATCCTTTTATGATCATTTTCAAGTCTTTTAGGGTGAC-CAGAATACCTTCAGGTGG
127 GACAGGTTCATCCTTCTATGATCATTTTCAAGTCCTTTAGGGTGACTCAG-ACACCTTCAGGTGA
* *
67516 AAGGTATACCCCAAAGGTATTTTGGTAATTTATTTAAAA-TCAAGTCCGATGTAGTCACTAGGAT
191 AAGGTATACCCCAAAGGCATTTTAGTAATTTATTTAAAACT-AAGTCCGATGTAGTCACTAGGAT
*
67580 GCTTTTATGCCAAATGTATGCATTAGGATAGGTT
255 GCTTTTATGCCAAAGGTATGCATTAGGATAGGTT
67614 CTTTCCTCTA
Statistics
Matches: 241, Mismatches: 39, Indels: 16
0.81 0.13 0.05
Matches are distributed among these distances:
308 20 0.08
309 164 0.68
310 50 0.21
311 3 0.01
312 4 0.02
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39
Consensus pattern (309 bp):
GAGTCTTTTAGAGTTATCGAGATACTTTCATGTCGAAGGTACATTCTAAGGGCAATTTGATAATT
TTTTTAAAATCGAGCTCGATATAGTCATCGAGGTACTTTTATGCCAAAGGTGTGCACTTAGGACA
GGTTCATCCTTCTATGATCATTTTCAAGTCCTTTAGGGTGACTCAGACACCTTCAGGTGAAAGGT
ATACCCCAAAGGCATTTTAGTAATTTATTTAAAACTAAGTCCGATGTAGTCACTAGGATGCTTTT
ATGCCAAAGGTATGCATTAGGATAGGTTTATCTTTTGACAATCATTTTC
Found at i:73380 original size:13 final size:13
Alignment explanation
Indices: 73362--73387 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73352 CATACCCAGA
73362 TGTATCGATACAT
1 TGTATCGATACAT
73375 TGTATCGATACAT
1 TGTATCGATACAT
73388 ATTCATTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:73384 original size:33 final size:32
Alignment explanation
Indices: 73342--73406 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
73332 AACCCTTGAA
73342 TGTATCGATACATACCCAGATGTATCGATACAT
1 TGTATCGATACATACCCA-ATGTATCGATACAT
** *
73375 TGTATCGATACATATTCATTGTATCGATACAT
1 TGTATCGATACATACCCAATGTATCGATACAT
73407 GGACAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATACCCAATGTATCGATACAT
Found at i:73417 original size:20 final size:19
Alignment explanation
Indices: 73371--73427 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
73361 ATGTATCGAT
**
73371 ACATTGTATCGATACATAT
1 ACATTGTATCGATACATGG
*
73390 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
*
73409 ACAATTGTATTGATACATG
1 AC-ATTGTATCGATACATG
73428 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:75105 original size:9 final size:9
Alignment explanation
Indices: 75088--75121 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
75078 GTCAACCATC
75088 AATGATGAT
1 AATGATGAT
75097 GAA-GATGAT
1 -AATGATGAT
75106 AATGATGAT
1 AATGATGAT
75115 AATGATG
1 AATGATG
75122 GTGACTCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.29
Consensus pattern (9 bp):
AATGATGAT
Found at i:79659 original size:13 final size:13
Alignment explanation
Indices: 79641--79665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79631 CAATATTCCT
79641 TGTATCGATACAA
1 TGTATCGATACAA
79654 TGTATCGATACA
1 TGTATCGATACA
79666 TAGGTTACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:82161 original size:19 final size:20
Alignment explanation
Indices: 82118--82169 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
82108 CACACCCAGA
*
82118 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCAT
82138 TGTATCGATACATGT-T-CAT
1 TGTATCGATACAT-TATGCAT
*
82157 TGTATTGATACAT
1 TGTATCGATACAT
82170 AGACAATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 14 0.48
20 14 0.48
21 1 0.03
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.44
Consensus pattern (20 bp):
TGTATCGATACATTATGCAT
Found at i:82253 original size:13 final size:13
Alignment explanation
Indices: 82235--82265 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82225 CGATACAGGG
82235 TACATTGTATCAA
1 TACATTGTATCAA
*
82248 TACATTGTATCGA
1 TACATTGTATCAA
82261 TACAT
1 TACAT
82266 GATGAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (13 bp):
TACATTGTATCAA
Found at i:83533 original size:20 final size:22
Alignment explanation
Indices: 83508--83552 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
83498 AATGTTTTAA
*
83508 TTGAAGAAA-TTGAA-ATTGAT
1 TTGAAGAAATTTGAAGAATGAT
83528 TTGAAGAAATTTGAAGAATGAT
1 TTGAAGAAATTTGAAGAATGAT
83550 TTG
1 TTG
83553 TTAAGGTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.41
21 5 0.23
22 8 0.36
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (22 bp):
TTGAAGAAATTTGAAGAATGAT
Found at i:84728 original size:19 final size:19
Alignment explanation
Indices: 84686--84735 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
84676 TTTCAATAAT
84686 TTGTATCGATACAACAGTA
1 TTGTATCGATACAACAGTA
* *
84705 ATGTATCGATACATA-AGTG
1 TTGTATCGATACA-ACAGTA
84724 TTGTAT-GATACA
1 TTGTATCGATACA
84736 GTGTATCGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 6 0.22
19 20 0.74
20 1 0.04
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (19 bp):
TTGTATCGATACAACAGTA
Done.