Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold858
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20781
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Found at i:3561 original size:476 final size:475
Alignment explanation
Indices: 71--10347 Score: 15138
Period size: 476 Copynumber: 21.6 Consensus size: 475
61 GGAAAAATTC
* * * *
71 TTTCTTTCGCCCTATGTT-CTTAAAATTAAATTTCATCCCTTTGACTAAGACAATTGCATCG-TT
1 TTTC-TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCC-TTGAATAAGACAA--GCATCGATT
* * * *
134 C-CCTAAACCGTCTCTTTCTCTTTTTCATG-TTGGGAAAGCCAAAACACATTGGCTATTGTTCGG
62 CTCCT-AACAGTCTCCTT-TC-TTTTCAAGATTGGG-AAGCCAAAACACATT-GCTATTGTTAGG
*
197 ATACCCGACATTTGATGCTTTGGTGTATCAAGAAAAGCTTTTCTTTTCACGTCGTTTTTGATAGC
122 ATACCCGACA-TTGATGCTTTGGTGTCTCAAGAAAAGCTTTTC--TTCACGTCGTTTTTGATAG-
* * **
262 AA-CAAAG-TTGTCTCTTAAATAA-TTGGAACTTTAATACTTC-AACTAATCCCTCAAAC--TTT
183 AATCAACGTTTGTCTCTTAAATAAGCT-GAACTTTAATAC-TCAAACTAAT-CCTCATTCTTTTT
* * * * *
321 AGATTTAGGCACCATAACACTTAGTCTTCTCATTCGGATACCCGCTA-TGTTGCTTTGGTTTCGC
245 AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC
* * * * * * *
385 AA-AATGG-TTTCTT-CGACCAATCTTTGTGAAGT-TAATCTTCGTGCTCTCAAA-GAGACCACT
309 AACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAA-GTTCGTGC-CTCAAATGAGA-CAAT
* * * * *
445 ATGTAATTCTTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTCACAAACCACGTTCTTCTC
371 ATG-GATTC-TAGGAATGAACTTCATTCTTTTCCCGATAAAGGACT-ACAAA-CACGTTCTCCTC
*
510 TTTAGCGACAACAGACATTGAAGTTTTTCTTTTGCATGGAAATCT
432 TTTAG-GACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCT
555 TTTCTTCGCCCTA-TTTCCTTTAAACATGAAAG-TCAT-CCTTGAATATAGACATAGCATCGTAT
1 TTTCTTCGCCCTATTTTCC-TTAAA-ATGAAAGTTCATCCCTTGAATA-AGACA-AGCATCG-A-
617 TCTCCTTCCTAACAGTCTCCTTTCTTTTCAAACGATTGGGAAGCCAAAAACACA-TGCTATTGTT
60 T-T-C-TCCTAACAGTCTCCTTTCTTTTC-AA-GATTGGGAAGCC-AAAACACATTGCTATTGTT
* * * *
681 AGGATACCCGAC-TTGATGCTTTGTTTTCTCCGAAGAACAGC-TTTCTTTCACGTCGTTTTCCGA
119 AGGATACCCGACATTGATGCTTTGGTGTCT-C-AAGAAAAGCTTTTC-TTCACGTCGTTTT-TGA
* * * *
744 TAGGAATTAA-G-TTGTCTCCTTAAA-AAGCTGAAAACTTTCATACTC--AC-CATTCTCATTCT
180 TA-GAATCAACGTTTGTCT-CTTAAATAAGCTG--AACTTTAATACTCAAACTAATCCTCATTCT
* * * * * * *
803 TTTTAGA-TTAGGCCAAATCAAAAACATAGTTCTACCCGTTAGGATACCTCGATATCTGACCGCT
241 TTTTAGATTTAGG-C--ACCATAAACATAG-TCTTCTCATTAGGATA-CACGATAT-TGA-TGCT
* * * * * *
867 CTGGTTTTCGCAA-AAATG-TTTTTTTCCAACAACGTTGTTGTTAAAGTCTCAGTTCGTGCCTC-
299 TTGG-TTTCGCAACAAAGGCTTTTTTCCCACCAA--TCGTTG-TAAAGTCTAAGTTCGTGCCTCA
*
929 AATGAGACAATATGGATTTCTAGGAATGTATACTTCATTCTTTTCCCGGATAAAGCTACTACAAA
360 AATGAGACAATATGGA-TTCTAGGAATG-A-ACTTCATTCTTTTCCC-GATAAAG-GACTACAAA
* *
994 CACATTC-CCT-TTTAGGACAAAAAGGACATTGACTAGTTTTTC-TTTGCCTGGAAATCT
420 CACGTTCTCCTCTTTAGGAC-AAAA-GACATTGA--AGTTTTTCTTTTGCATGGAAATCT
* *
1051 TTTCTTTCGCTCTAATTTTCCTTAAAA-GACAG-TCAT-CCTTGGAA-AAGACAAGCA-CTGATT
1 TTTC-TTCGCCCT-ATTTTCCTTAAAATGAAAGTTCATCCCTT-GAATAAGACAAGCATC-GATT
* * ** * *
1111 CTCCTAAACAG-CGCATTT-AGTTCAAGATTGGG-AGCTACATAACACATTGCCATTGTTAGGAT
62 CTCCT-AACAGTCTCCTTTCTTTTCAAGATTGGGAAGC--CAAAACACATTGCTATTGTTAGGAT
** * * *
1173 ACCCGGACAGTTTGATTATTTGGGTGTTCTCAAGAAAAGC-TTTCTT-TCG-CGTCATTTAATAG
124 ACCC-GACA--TTGATGCTTT-GGTG-TCTCAAGAAAAGCTTTTCTTCACGTCGT-TTTTGATAG
** * * * *
1235 ACAT-AACGTTTGTCGTCTGTCACTTATGCCGAAACATTAATACTCAAACAAATCCTCATTCTTT
183 A-ATCAACGTTTGTC-TCT-T-AAATAAGCTG-AACTTTAATACTCAAACTAATCCTCATTCTTT
* * *
1299 TTTGCTTTAGGCA-CATAAACATAGTCTTCTC--TAGGATACACGATATTGATGCTTTGGTTTTG
243 TTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
*
1361 CCAACAAAGGAC-TTTTTCCCACCAA-CGTTGTGAAGTCTAAGTTCGT-CTGCTCAAATGAG-CA
308 -CAACAAAGG-CTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGC--CTCAAATGAGACA
*
1422 ACTATGGATTCCTTAGGGAATGAACTTCATTCTTTT-CCGCT-AAGGACTA-AAACACGTTCTCC
369 A-TATGGATT-C-TA-GGAATGAACTTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCC
* * * *
1484 TC-TTAGGACGAAAATACATTGCAAGTGTCTCTTCT-CATGGAAATCT
430 TCTTTAGGAC-AAAAGACATTG-AAGTTTTTCTTTTGCATGGAAATCT
* * * *
1530 TTTCTTCGCCCTATTTTTCCTAAAATATTAAAGTTCTTCCCCTGAATAACGACAAGCATTCGATC
1 TTTCTTCGCCCTA-TTTTCCTTAAA-ATGAAAGTTCATCCCTTGAATAA-GACAAGCA-TCGAT-
* * * *
1595 TCTTTCCTAACAGTCTCCCTTCTTCTCAAGATTGGGGAAGCCCCAAACACCATTGCTATTGTTAT
61 TC--TCCTAACAGTCTCCTTTCTTTTCAAGATT-GGGAAG-CCAAAACA-CATTGCTATTGTTAG
* * * *
1660 GATACCCGACATTGA-GC-TTGGTGTCTC-AGAACAGGC-TTTC-TCGGCGTC-ATTTTAATAGA
121 GATACCCGACATTGATGCTTTGGTGTCTCAAGAA-AAGCTTTTCTTC-ACGTCGTTTTTGATAGA
** * * * *
1719 ATCCGCATTTGTTCTCTTACATATGCCTGAAC-ATAATACTCAATAACTAATCCTCATTCCTTTT
184 ATCAACGTTTG-TCTCTTAAATAAG-CTGAACTTTAATACTC-A-AACTAATCCTCATT-CTTTT
* * * * *
1783 T-GATTTAGGGCACC--AAACATATTCTTCT-AATAGTATACTACGATCTTGATGCTCTGG-TTC
244 TAGATTTA-GGCACCATAAACATAGTCTTCTCATTAGGATAC-ACGATATTGATGCTTTGGTTTC
* * *
1843 GCAA-ACAAGG-TTTTTTTCCACCAATCGTTGTAAAAGTCTAGGTTCGTGCCTTCCAATGAGACA
307 GCAACA-AAGGCTTTTTTCCCACCAATCGTTGT-AAAGTCTAAGTTCGTGCC-TCAAATGAGAC-
* * * *
1906 AAACACACGGA-TCATAGGAGATGAAC-TCA-TCTTTT-CCGAATAAAGCACTACAAACACATTC
368 --A-ATATGGATTC-TAGGA-ATGAACTTCATTCTTTTCCCG-ATAAAGGACTACAAACACGTTC
* * *
1967 TCCTC-TTAGGTACATAACGACATTGCAG--TTTCTTTTGC-TGGAACTC-
427 TCCTCTTTAGG-ACA-AAAGACATTGAAGTTTTTCTTTTGCATGGAAATCT
* * *
2013 TTTCTTTCG-CTTA-TTTCCATAACATGAAAGTTTCATCCCTTGAATAAGACAAGCATCGATT-T
1 TTTC-TTCGCCCTATTTTCCTTAAAATGAAAG-TTCATCCCTTGAATAAGACAAGCATCGATTCT
*
2075 CCTAGCAGTCTCCTTT-TCTTTCTAAGGA-TGGGAAGCCAAAACACATTGCTA--GTTAGGATAC
64 CCTAACAGTCTCCTTTCT-TTTC-AA-GATTGGGAAGCCAAAACACATTGCTATTGTTAGGATAC
* *
2136 CCGACA-TGATGCTTTGGTTTGTCTC-AGAAAGGGC--TTC-TCACGTCGTTTTTGCT--AATC-
126 CCGACATTGATGCTTTGG--TGTCTCAAGAAA-AGCTTTTCTTCACGTCGTTTTTGATAGAATCA
*
2193 ACGTTTTGTCTCTCTTAAATAAGCTGAACTTTGATACTCAAAACTTAAT-CTCATTTCTTTTTAG
188 ACG-TTTG--TCTCTTAAATAAGCTGAACTTTAATACTC-AAAC-TAATCCTCA-TTCTTTTTAG
* * *
2257 ATTTAGGTCACCGTACAA-ACTTGTCTT-TCA-TAGGCTA-ACAGATATTGATGC-TT-G-TTCG
247 ATTTAGG-CACCATA-AACA-TAGTCTTCTCATTAGGATACAC-GATATTGATGCTTTGGTTTCG
* * * * *
2315 CCAC-AAGG-ATTTTT-CCACCAATC-ATG-AAAGT-TAAGTT-ATGCCTCAACTGAGACCAA-A
308 CAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA-CAATA
* * * *
2372 TAGGATTCTAGTAATGATCTTCCTTCTTTTTTCCTGATAAAGGACTACAAACACGTTCTCCTC-T
372 T-GGATTCTAGGAATGAACTTCATTC--TTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTT
*
2436 TAGGAC-AAAGACATTGAAGTTTCTCTTTTGCATGGAAATCT
434 TAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCT
*
2477 TTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
* *
2542 TAACAGTCTCCTTTC-TTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
* * * *
2606 ATTGATTCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* * * * *
2671 CTCTTAAATATGCCGAACATTAATACTCAAACAAATCCTCATTCTTTTTTGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * *
2736 AACATAGTCTTCTCATTAGGATACACGATATTGACGCTTTGGTTTTGCAACAAAGGCTTTCTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
*
2801 CACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
* *
2866 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGAGAAAATACATTGAAGTT
391 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
*
2931 TCTCTTTTGCATGGAAATCT
456 TTTCTTTTGCATGGAAATCT
* * *
2951 TTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCTTCCCCTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
*
3016 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTATGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
* * * * *
3081 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAGCATTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* * *
3146 CTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * *
3211 AACATAGTATTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* * *
3276 CACCAATCGTTGTAAAGTCTAGGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGAATGAAC
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAAC
* *
3341 TTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGT
390 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
*
3406 TTTTCTTTTGCTTGGAAATCT
455 TTTTCTTTTGCATGGAAATCT
* *
3427 TTTCTTCGCTCTATTTTCCATAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
*
3492 TAGCAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
*
3557 ATTGATGCTTTGGTGTCTCAAGAAAGGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* *
3622 CTCTTAAATAAGCTGAACTTTGATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCGTA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * * *
3687 AACTTAGTCTTCTCATTAGGATAAACGATATTGATGCTTTGGTTTCGCCACAAAGGATTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* ** * *
3752 CACCAATCATTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATC
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAAC
* *
3817 TTCATTCTTTTTCTGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
390 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
*
3882 TTCTCTTTTGCATGGAAATCT
455 TTTTCTTTTGCATGGAAATCT
*
3903 TTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
* *
3968 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
** * * *
4033 ATTGATTATTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* * * *
4098 CTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTTGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
*
4163 AACATAGTCTTCTCATTAGGATACACGATATTGACTGCTTTGGTTTTGCAACAAAGGCTTTTTTC
261 AACATAGTCTTCTCATTAGGATACACGATATTGA-TGCTTTGGTTTCGCAACAAAGGCTTTTTTC
*
4228 CCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAAC
325 CCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAAC
*
4293 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGAGAAAAGACATTGAAGT
390 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
*
4358 TTCTCTTTTGCATGGAAATCT
455 TTTTCTTTTGCATGGAAATCT
*
4379 TTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
4444 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
* *
4509 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAAAATCAACATTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* * * *
4574 CTCTTAAATAAGCTAAACTTTGATACTCACACTAATCCTCATTCTTTTTAGATTTAGGCACCTTA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * *
4639 AACTTAGTCTTCTCATTAGGATACGCGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* * *
4704 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGAAATGAAC
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAAC
* * * *
4769 TTCATTCTTTTCCCGATAAAGCACTATAAACACATTCTCTTCTTTAGGACAAAAGACATTGAAGT
390 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
* * *
4834 TTTTCTTTTTCCTTGAAATCT
455 TTTTCTTTTGCATGGAAATCT
* * * *
4855 TTTCTTCGCCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATAAGACAAGCATCGATTATCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
4920 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
4985 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* * *
5050 CTCTTAAATAAGCTAAACTTTGATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCTTA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* *
5115 AACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* * *
5180 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAACACAGGATTTTAGGAATGAAC
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATA-TGGATTCTAGGAATGAAC
* * *
5245 TTCGATTCTTTTCCCAATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAG
390 TTC-ATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAG
5310 TTTTTCTTTTGCATGGAAATCT
454 TTTTTCTTTTGCATGGAAATCT
*
5332 TTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
5397 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
5462 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
*
5527 CTCTTAAATAAGCTGAACTTTGATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
*
5592 AACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* * *
5657 CACCAATCGTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATC
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAAC
*
5722 TTCATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
390 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
5787 TTTTCTTTTGCATGGAAATCT
455 TTTTCTTTTGCATGGAAATCT
5808 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
5873 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
5938 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
6003 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
*
6068 AACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* *
6133 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATC
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAAC
6198 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
390 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
6263 TTTTCTTTTGCATGGAAATCT
455 TTTTCTTTTGCATGGAAATCT
*
6284 TTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
*
6349 TAGCAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
*
6414 ATTGATGCTTTGGTGTCTCAAGAAAGGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* *
6479 CTCTTAAATAAGCTGAACTTTGATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCGTA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * * *
6544 AACTTAGTCTTCTCATTAGGATAAACGATATTGATGCTTTGGTTTCGCCACAAAGGATTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* ** * *
6609 CACCAATCATTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAATATGGATTCTAGTAATGATC
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAAC
* *
6674 TTCATTCTTTTTCTGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
390 TTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGT
*
6739 TTCTCTTTTGCATGGAAATCT
455 TTTTCTTTTGCATGGAAATCT
*
6760 TTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
6825 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
6890 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
*
6955 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCGTA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * *
7020 AACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* * *
7085 CACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCT
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
* *
7150 TCATTATTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
391 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
7215 TTTCTTTTGCATGGAAATCT
456 TTTCTTTTGCATGGAAATCT
7235 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
7300 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
* *
7365 ATTGATGCTTTGGTGTCTCAAGAACAGCTTTTCTTCACGTCGTTTTTGATAGAATTAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
*
7430 CTCTTAAATAAGCTGAACTTTAATACTCAACCTAATCCTCATTCTTTTTAGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* *
7495 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
7560 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
* *
7625 TCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTT
391 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
*
7690 TTTCTTTTGCCTGGAAATCT
456 TTTCTTTTGCATGGAAATCT
*
7710 TTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
7775 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
* * *
7840 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
*
7905 CTCTTAAATAAGCTGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
7970 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
8035 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
* *
8100 TCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTT
391 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
8165 TTTCTTTTGCATGGAAATCT
456 TTTCTTTTGCATGGAAATCT
8185 TTTCTTCGCCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTC
1 TTTCTTCGCC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTC
8250 CTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGA
65 CTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGA
8315 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTG
130 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTG
* * *
8380 TCTCTTAAATAAGCTAAACTTTGATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCTT
195 TCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCAT
* *
8445 AAACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTC
260 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTC
* *
8510 CCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGAATGAA
325 CCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAA
* *
8575 CTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAG
389 CTTCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAG
*
8640 TTTTTCTTTTGCTTGGAAATCT
454 TTTTTCTTTTGCATGGAAATCT
*
8662 TTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
8727 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
8792 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* *
8857 CTCTTAAATAAGCTGAACTTTGATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCTTA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
*
8922 AACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
* *
8987 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCT
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
* *
9052 TCATTCTTTTTCCGATAAAGGACTAGAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
391 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
9117 TTTCTTTTGCATGGAAATCT
456 TTTCTTTTGCATGGAAATCT
9137 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
9202 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
* * *
9267 ATTGATGCTTTGGTGTCTCAAGAACAGCTTTTCTTCACGTCGTTTTCGATAGAATTAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
*
9332 CTCTTAAATAAGCTGAACTTTAATACTCAACCTAATCCTCATTCTTTTTAGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * * * *
9397 AACATAGTCTTCCCGTTAGGATACGCGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
9462 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
* *
9527 TCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTT
391 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
*
9592 TTTCTTTTGCCTGGAAATCT
456 TTTCTTTTGCATGGAAATCT
*
9612 TTTCTTCGCTCTATTTTCCTT-AAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
1 TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
* *
9676 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCGAC
66 TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
** * * *
9741 ATTGATTATTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTTGT
131 ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
* * * * *
9806 CTCTTAAATATGCCGAACATTAATACTCAAACAAATCCTCATTCTTTTTTGATTTAGGCACCATA
196 CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
* * *
9871 AACATAGTCTTCTCATTAGGATACACGATATTGACGCTTTGGTTTTGCAACAAAGGCTTTCTTCC
261 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
*
9936 CACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
326 CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
*
10001 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGAGAAAAGACATTGAAGTT
391 TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
*
10066 TCTCTTTTGCATGGAAATCT
456 TTTCTTTTGCATGGAAATCT
*
10086 TTTCTTC-CCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTC
1 TTTCTTCGCC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTC
10150 CTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGA
65 CTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGA
*
10215 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAAAATCAACGTTTG
130 CATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTG
* * * *
10280 TCTCTTAAATAAGCTAAACTTTGATACTCACACTAATCCTCATTCTTTTTAGATTTAGGCACCTT
195 TCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCAT
10345 AAA
260 AAA
10348 TGATGAAAAC
Statistics
Matches: 9005, Mismatches: 563, Indels: 459
0.90 0.06 0.05
Matches are distributed among these distances:
459 6 0.00
460 21 0.00
461 5 0.00
462 13 0.00
463 84 0.01
464 66 0.01
465 91 0.01
466 30 0.00
467 38 0.00
468 8 0.00
469 21 0.00
470 20 0.00
471 62 0.01
472 83 0.01
473 40 0.00
474 612 0.07
475 2222 0.25
476 3732 0.41
477 635 0.07
478 21 0.00
479 26 0.00
480 42 0.00
481 69 0.01
482 78 0.01
483 126 0.01
484 91 0.01
485 102 0.01
486 88 0.01
487 125 0.01
488 75 0.01
489 53 0.01
490 37 0.00
491 47 0.01
492 15 0.00
493 26 0.00
494 42 0.00
495 32 0.00
496 62 0.01
497 43 0.00
498 11 0.00
499 5 0.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (475 bp):
TTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCC
TAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGAC
ATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGT
CTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATA
AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCC
CACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGGAATGAACT
TCATTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTT
TTTCTTTTGCATGGAAATCT
Found at i:15269 original size:475 final size:476
Alignment explanation
Indices: 11040--20781 Score: 16557
Period size: 476 Copynumber: 20.5 Consensus size: 476
11030 TCATCATACT
*
11040 TAGTCTTCTCATTAGGATACGCGATATTGATGCTTTGGTTTCGCAATC-AAGG-TTTTTTCCCAC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA-CAAAGGCTTTTTTCCCAC
* *
11103 C-ATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTA-GAATGAACTTC
65 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTC
* *
11166 ATTCTTTTCCCGATAAAGCACTATAAACACATTCTCTTCTTTAGGACAAAAGACA-TGAAGTTTT
130 ATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
* * * * *
11230 TCTTTTTCCTGGAAATC-TTTCTTCGCTCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATA
195 TCTTTTGCATGGAAATCTTTTCTTCGC-CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATA
*
11294 AGACAAGCATCGATTCTCCTATCAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGC
259 AGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGC
11359 TATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTT
324 TATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTT
* *
11424 TGATAGAATCAACGTTTGTCTCTTAAATAAGCTAAACTTTGATACTCAAACTAATCCTCATTCTT
389 TGATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTT
* *
11489 TTTAGATTTAGGCACCTTAAACT
454 TTTAGATTTAGGCACCATAAACA
*
11512 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* ** *
11577 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACAGATTTTAGGAATGAACTTCG
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTC-
*
11642 A-TCTTTTCCCAATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
130 ATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
* * *
11706 TCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCTTCCCCTGAATAA
195 TCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
11771 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
260 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
* * *
11836 ATTGTTATGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTT
325 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
* * * * * *
11901 AATAGAATCAGCATTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTT
390 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTT
11966 TTAGATTTAGGCACCATAAACA
455 TTAGATTTAGGCACCATAAACA
* * *
11988 TAGTATTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
12053 AATCGTTGTAAAGTCTAGGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
12118 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * *
12183 CTTTTGCTTGGAAATCTTTTCTTCGCTCTATTTTCCATAAAATGAAAGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
*
12248 ACAAGCATCGATTCTCCTAGCAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
12313 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
* *
12378 ATAGAATTAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAACCTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
12443 TAGATTTAGGCACCATAAACA
456 TAGATTTAGGCACCATAAACA
* * * * *
12464 TAGTCTTCCCGTTAGGATACACTATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
12529 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
12593 TTCTTTT-CCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* *
12657 CTTTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
* *
12722 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
** * * *
12787 TTGTTAGGATACCCGACATTGATTATTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTA
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
* * *
12852 ATAGAATCAACGTTTGTCTCTTAAATATGC-GAACATTAATACTCAAACAAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
*
12916 TTGATTTAGGCACCATAAACA
456 TAGATTTAGGCACCATAAACA
* * *
12937 TAGTCTTCTCATTAGGATACACGATATTGACGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
*
13002 AATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * * *
13066 TTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGAGAAAAGACATTGAAGTTTCT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
13131 CTTTTGCATGGAAATCTTTTCTTC-CCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
196 CTTTTGCATGGAAATCTTTTCTTCGCC-CTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
*
13195 GACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
260 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
13260 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
325 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
* * * *
13325 GATAAAATCAACGTTTGTCTCTTAAATAAGCTAAACTTTGATACTCACACTAATCCTCATTCTTT
390 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTT
* *
13390 TTAGATTTAGGCACCTTAAACT
455 TTAGATTTAGGCACCATAAACA
*
13412 TAGTCTTCTCATTAGGATACGCGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
13477 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGTAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
13542 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * *
13607 CTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAACGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
13672 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
13737 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
* *
13802 ATAGAATCAACGTTTGTCTCTTAAATAAGCTAAACTTTGATACTCAAACTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
* *
13867 TAGATTTAGGCACCTTAAACT
456 TAGATTTAGGCACCATAAACA
*
13888 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* ** *
13953 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACAGATTTTAGGAATGAACTTCG
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTC-
*
14018 A-TCTTTTCCCAATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
130 ATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
* *
14082 TCTTTTGCTTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
195 TCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
*
14147 GACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
260 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
14212 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
325 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
14277 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTT
390 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTT
*
14342 TTAGATTTAGGCACCATAAACT
455 TTAGATTTAGGCACCATAAACA
* *
14364 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
*
14429 AATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * *
14493 TTCTTTT-CCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTTTCT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* *
14557 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCCTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
14622 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
* *
14687 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTA
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
*
14752 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACATTAATACTCAAACTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
14817 TAGATTTAGGCACCATAAACA
456 TAGATTTAGGCACCATAAACA
* *
14838 TAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
14903 AATCGTTGTAAAGTCTAGGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
14968 TTCTTTT-CCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * *
15032 CTTTTGCTTGGAAATCTTTTCTTCGCTCTATTTTCCATAAAATGAAAGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
*
15097 ACAAGCATCGATTCTCCTAGCAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
15162 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAG-AAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
*
15226 ATAGAATCAACGTTTGTCTCTTAAATATGCTGAACATTTAATACTCAAACTAATCCTCATTCTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAAC-TTTAATACTCAAACTAATCCTCATTCTTT
15291 TTAGATTTAGGCACCATAAACA
455 TTAGATTTAGGCACCATAAACA
15313 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
15378 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
15443 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
*
15508 CTTTTGCCTGGAAATCTTTTCTTCG-CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
15572 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
15637 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
* *
15702 ATAGAATCAACGTTTGTCTCTTAAATAAGCTAAACTTTGATACTCAAACTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
* *
15767 TAGATTTAGGCACCTTAAACT
456 TAGATTTAGGCACCATAAACA
*
15788 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
15853 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGTAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* *
15918 TTCTTTTCCCGATAAAGCACTATAAACACATTCTCTTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * * * *
15983 CTTTTTCCTGGAAATCTTTTCTTCGCCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
*
16048 ACAAGCATCGATTATCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
16113 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
** *
16178 ATAGAATCAACGTTTGTCTCTTAAATAAGCAAAACTTTGATACTCAAACTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
* *
16243 TAGATTTAGGCACCTTAAACT
456 TAGATTTAGGCACCATAAACA
*
16264 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * ** *
16329 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACACAGATTTTAGGAATGAACTTCG
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTC-
*
16394 A-TCTTTTCCCAATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
130 ATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
* * *
16458 TCTTTTGCTTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAA
195 TCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
*
16523 GACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
260 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
16588 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
325 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
16653 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTT
390 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTT
*
16718 TTAGATTTAGGCACCATAAACT
455 TTAGATTTAGGCACCATAAACA
* * *
16740 TAGTCTTCTCATTAGGATACACGATATTGTTGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
16805 AATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * *
16869 TTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
16934 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
16999 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
* *
17064 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAACAGCTTTTCTTCACGTCGTTTTCG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
* *
17129 ATAGAATTAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAACCTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
17194 TAGATTTAGGCACCATAAACA
456 TAGATTTAGGCACCATAAACA
* * * *
17215 TAGTCTTCCCGTTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
17280 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
17344 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* *
17409 CTTTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
* *
17474 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
** * * *
17539 TTGTTAGGATACCCGACATTGATTATTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTA
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
* * * *
17604 ATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACAAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
*
17669 TTGATTTAGGCACCATAAACA
456 TAGATTTAGGCACCATAAACA
* * *
17690 TAGTCTTCTCATTAGGATACACGATATTGACGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
17755 AATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * *
17819 TTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * *
17884 CTTTTGCATGGAATTCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCCTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
*
17949 ACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
18014 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
18079 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
*
18144 TAGATTTAGGCACCATAAACT
456 TAGATTTAGGCACCATAAACA
*
18165 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * *
18230 AATCATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * *
18295 TTCTTTTTCCAATCAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * *
18360 CTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCAGCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
18425 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
*
18490 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAACAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
*
18555 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTTAAACTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
18620 TAGATTTAGGCACCATAAACA
456 TAGATTTAGGCACCATAAACA
* * *
18641 TAGTTTTCTCATTAGGATACACGATATTGATGCTCTGGTTTTGCAACAAAGGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * * *
18706 AATCATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * *
18771 TTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* * *
18836 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTAAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
* * * *
18901 ACAAGCATCGATTCTCCTAACAGCCTCCTTTCTTTTCAAAATTGGGAAGCCAAAACATATTTCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
* *
18966 TTGTTAGGATACCCGATATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
* * * * **
19031 ATAGAATCAGCGTTTGTCTCTTAAAT-AGGTCGAACATTAATACTCAAACTAATTCTCATTCCAT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCT-GAACTTTAATACTCAAACTAATCCTCATTCTTT
19095 TTAGATTTAGGCACCATAAACA
455 TTAGATTTAGGCACCATAAACA
* * *
19117 TAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTTTCGTAACAAAGGTTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* *
19182 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * *
19247 TTCTTTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAGGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* *
19312 CTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
* *
19377 ACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAGGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
*
19442 TTGTTAGGATACCTGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
*
19507 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTGATACTCAAACTAATCCTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
*
19572 TAGATTTAGGCACCATAAACT
456 TAGATTTAGGCACCATAAACA
*
19593 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAAGCTTTTTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* * * *
19658 AATCGTTGTAAAGTCTACGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * * * *
19723 TTCTTTTCCCGAGAAAGGACAACAAACACGTTCTCCTCTTTATGACAAAAGACATTGAAGTTTTT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
* *
19788 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCCTGAATAAG
196 CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
19853 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
261 ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
19918 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
326 TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
*
19983 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCGTCATTCTTTT
391 ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
*
20048 TAGATTTAGGCACCATAAACT
456 TAGATTTAGGCACCATAAACA
20069 TAAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCAC
1 T-AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCAC
* * * *
20134 CAATCGTTGTAAAGTCTAGGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTC
65 CAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTC
* * *
20199 ATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
130 ATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTT
* *
20264 T-TTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
195 TCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAA
* *
20328 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCC
260 GACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCT
** * *
20393 ATTGTTAGGATACCCGACATTGATTATTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTT
325 ATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTT
* * * * * *
20458 AATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACAAATCCTCATCCTTT
390 GATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTT
*
20523 TTTGATTTAGGCACCATAAACA
455 TTAGATTTAGGCACCATAAACA
* * *
20545 TAGTCTTCTCATTAGGATACACGATATTGACGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCACC
1 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
*
20610 AATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGGAATGAACTTCA
66 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
* * * *
20674 TTCTTTTCCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGAGAAAAGACATTGAAGTTTCT
131 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
20739 CTTTTGCATGGAAATCTTTTCTTC-CCTCTATTTTCCTTAAAAT
196 CTTTTGCATGGAAATCTTTTCTTCGCC-CTATTTTCCTTAAAAT
Statistics
Matches: 8789, Mismatches: 453, Indels: 53
0.95 0.05 0.01
Matches are distributed among these distances:
472 49 0.01
473 191 0.02
474 1152 0.13
475 2567 0.29
476 4626 0.53
477 204 0.02
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (476 bp):
TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGAACTTCA
TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
CTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAG
ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTA
TTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTG
ATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTT
TAGATTTAGGCACCATAAACA
Done.