Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold86
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 313076
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
File 1 of 3
Found at i:1500 original size:50 final size:51
Alignment explanation
Indices: 1424--1524 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 51
1414 TGACCTAAAG
1424 ATTGCCTCATCTTCTGGCTATGGATCATTCTTGCCTGCTGCTTCCTTGACT
1 ATTGCCTCATCTTCTGGCTATGGATCATTCTTGCCTGCTGCTTCCTTGACT
1475 ATTGCCT-ATCTTCTGGCTATGGATCATTCTTGCCTGCTGCTTCCTTGACT
1 ATTGCCTCATCTTCTGGCTATGGATCATTCTTGCCTGCTGCTTCCTTGACT
1525 GTGCATTAGC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 43 0.86
51 7 0.14
ACGTcount: A:0.12, C:0.29, G:0.18, T:0.42
Consensus pattern (51 bp):
ATTGCCTCATCTTCTGGCTATGGATCATTCTTGCCTGCTGCTTCCTTGACT
Found at i:11478 original size:20 final size:20
Alignment explanation
Indices: 11453--11527 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
11443 TAAAAGACAT
*
11453 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTCAAG
11473 AATGTATCGATACATTCATA-
1 AATGTATCGATACATTCA-AG
*
11493 CATGTATCGATACATTCAAG
1 AATGTATCGATACATTCAAG
*
11513 AATGTATGGATACAT
1 AATGTATCGATACAT
11528 CTAGGTACTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTCAAG
Found at i:11514 original size:40 final size:39
Alignment explanation
Indices: 11450--11527 Score: 129
Period size: 40 Copynumber: 2.0 Consensus size: 39
11440 GGGTAAAAGA
*
11450 CATAATGTATCGATACATTGAAGAATGTATCGATACATT
1 CATAATGTATCGATACATTCAAGAATGTATCGATACATT
*
11489 CATACATGTATCGATACATTCAAGAATGTATGGATACAT
1 CATA-ATGTATCGATACATTCAAGAATGTATCGATACAT
11528 CTAGGTACTT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 4 0.11
40 32 0.89
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (39 bp):
CATAATGTATCGATACATTCAAGAATGTATCGATACATT
Found at i:18530 original size:85 final size:84
Alignment explanation
Indices: 18358--19044 Score: 380
Period size: 85 Copynumber: 8.3 Consensus size: 84
18348 TCCTAGGAAA
* * * * * * *
18358 CAACCTTTATCTCTTTGTCTACCTATTGGCTCAAT-CCTAGG-AGACACCTTTACCGTATGGTGA
1 CAACCTTCATCTTTTTGTTTACCTA-TCGCTCAGTCCCT-GGTAGACACCATTACCCTATGGTGA
* * * ***
18421 CTTGTCAGCTTCA-TCTCCAAT
64 CCTATTAGC-TCAGTCTCTGGT
* * *
18442 CAACCTTCATCTTTTTGTTTACTTGTCCGCTCAGTCCTTGGTAGACACCATTACCCTATGGTGAC
1 CAACCTTCATCTTTTTGTTTACCTAT-CGCTCAGTCCCTGGTAGACACCATTACCCTATGGTGAC
* * * *
18507 CTGTCAGCTCAGTTTTTGGT
65 CTATTAGCTCAGTCTCTGGT
* ** * * * *
18527 CAACCTTTATCTCATTGTTTACCTATCGGCTCAGTCCCCGGAAAAC-CCATTACCCCTATGGTAA
1 CAACCTTCATCTTTTTGTTTACCTATC-GCTCAGTCCCTGGTAGACACCATTA-CCCTATGGTGA
* * *
18591 CCTATTAGCTTAGTTTGTGGT
64 CCTATTAGCTCAGTCTCTGGT
* ** * ** * * * *
18612 TAACCTTCATCTCATTGTTTACCTATTGTCTTTGTCACTAGTAAAC-CCATTACCTTTATGGTGA
1 CAACCTTCATCTTTTTGTTTACCTATCG-CTCAGTCCCTGGTAGACACCATTACC-CTATGGTGA
* * *
18676 CCTGTTAGCTTAGTCTCTAGT
64 CCTATTAGCTCAGTCTCTGGT
* * ** * * * *
18697 TAACCTCCATCTCATTGTTTATCTGTCAGCCCAGTCCTTGGTAGACACCATTACCCCTATGGTGA
1 CAACCTTCATCTTTTTGTTTACCTATC-GCTCAGTCCCTGGTAGACACCATTA-CCCTATGGTGA
**
18762 CCTATTAGCTCAGTCTCCAGT
64 CCTATTAGCTCAGTCTCTGGT
* * *
18783 TAA-CTTCATC-ATTTGTTTACCTAT--CT--GT---T--TAG--ACCTTTACACCTATGGTGAC
1 CAACCTTCATCTTTTTGTTTACCTATCGCTCAGTCCCTGGTAGACACCATTAC-CCTATGGTGAC
18835 CTATTAGCTCAGTC-CTTGGT
65 CTATTAGCTCAGTCTC-TGGT
* * *
18855 CAACCTTCAT-ATTTTGTTTACCTGTCGACTCAGTCCCTGGTA-A-ATCCTTTATCCCT-TGGTG
1 CAACCTTCATCTTTTTGTTTACCTATCG-CTCAGTCCCTGGTAGACA-CCATTA-CCCTATGGTG
*
18916 ACCTATCAGCTCAGTCTCTGGT
63 ACCTATTAGCTCAGTCTCTGGT
** * * * * *
18938 CAACCTTCATCTTTTCATTTACCTATTGGCTTAGTCCCTGGTA-AAACCCTTACACCTATGGTGG
1 CAACCTTCATCTTTTTGTTTACCTA-TCGCTCAGTCCCTGGTAGACACCATTAC-CCTATGGTGA
* * * * *
19002 CTTGTCAACTTAGTC-CTCGGT
64 CCTATTAGCTCAGTCTCT-GGT
*
19023 CAACCTTCATCTTCTTGTTTAC
1 CAACCTTCATCTTTTTGTTTAC
19045 ATGTTGGCTT
Statistics
Matches: 480, Mismatches: 88, Indels: 69
0.75 0.14 0.11
Matches are distributed among these distances:
71 2 0.00
72 35 0.07
73 18 0.04
74 3 0.01
76 3 0.01
78 2 0.00
79 2 0.00
81 2 0.00
83 39 0.08
84 95 0.20
85 241 0.50
86 36 0.08
87 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.38
Consensus pattern (84 bp):
CAACCTTCATCTTTTTGTTTACCTATCGCTCAGTCCCTGGTAGACACCATTACCCTATGGTGACC
TATTAGCTCAGTCTCTGGT
Found at i:18554 original size:435 final size:435
Alignment explanation
Indices: 17744--18593 Score: 1628
Period size: 435 Copynumber: 2.0 Consensus size: 435
17734 TCTTCCAAAA
17744 TTAAATGGGAAATTAAGCAATCTCTAAGGGTCTTAGATGACAGACTACCACATCTTCATAAGAAT
1 TTAAATGGGAAATTAAGCAATCTCTAAGGGTCTTAGATGACAGACTACCACATCTTCATAAGAAT
*
17809 TCATCCTCTATTAACCACATTCAATCAAGTCCATTCTTGCTTGGTTGTGCTCGATTAGGCCTCAC
66 CCATCCTCTATTAACCACATTCAATCAAGTCCATTCTTGCTTGGTTGTGCTCGATTAGGCCTCAC
*
17874 TCCGAACATCTTATATCCCTTGTTCGCCTGTCGGCTTAGTCCTGGGAAACAACCTTTATCTCTTT
131 TCCGAACATCTTATATCCCTTGTTCGCCTGTCGGCTTAGTCCTAGGAAACAACCTTTATCTCTTT
17939 GTCTACCTATTGGCTCAATCCTAGGAGACACCTTTACCGTATGGTGACTTGTCAGCTTCATCTCC
196 GTCTACCTATTGGCTCAATCCTAGGAGACACCTTTACCGTATGGTGACTTGTCAGCTTCATCTCC
* *
18004 AATCAACGTTCATCTTTTTGTTTACTTGTCGGCTCAGTCCTCGGTAGACACAATTACCCTATGGT
261 AATCAACCTTCATCTTTTTGTTTACTTGTCCGCTCAGTCCTCGGTAGACACAATTACCCTATGGT
*
18069 GACCTGTCAGCTCAGTTTTTGGTCAACCTTTATCTCATTGTTTACCTATCGGCTCAGTCCCCGGT
326 GACCTGTCAGCTCAGTTTTTGGTCAACCTTTATCTCATTGTTTACCTATCGGCTCAGTCCCCGGA
18134 AAACCCATTACCCCTATGGTAACCTTTATCTCATTTAATTCATCT
391 AAACCCATTACCCCTATGGTAACCTTTATCTCATTTAATTCATCT
18179 TTAAATGGGAAATTAAGCAATCTCTAAGGGTCTTAGATGACAGACTACCACATCTTCATAAGAAT
1 TTAAATGGGAAATTAAGCAATCTCTAAGGGTCTTAGATGACAGACTACCACATCTTCATAAGAAT
*
18244 CCATCCTCTATTGACCACATTCAATCAAGTCCATTCTTGCTTGGTTGTGCTCGATTAGGCCTCAC
66 CCATCCTCTATTAACCACATTCAATCAAGTCCATTCTTGCTTGGTTGTGCTCGATTAGGCCTCAC
18309 TCCGAACATCTTATATCCCTTGTTCGCCTGTCGGCTTAGTCCTAGGAAACAACCTTTATCTCTTT
131 TCCGAACATCTTATATCCCTTGTTCGCCTGTCGGCTTAGTCCTAGGAAACAACCTTTATCTCTTT
18374 GTCTACCTATTGGCTCAATCCTAGGAGACACCTTTACCGTATGGTGACTTGTCAGCTTCATCTCC
196 GTCTACCTATTGGCTCAATCCTAGGAGACACCTTTACCGTATGGTGACTTGTCAGCTTCATCTCC
* *
18439 AATCAACCTTCATCTTTTTGTTTACTTGTCCGCTCAGTCCTTGGTAGACACCATTACCCTATGGT
261 AATCAACCTTCATCTTTTTGTTTACTTGTCCGCTCAGTCCTCGGTAGACACAATTACCCTATGGT
18504 GACCTGTCAGCTCAGTTTTTGGTCAACCTTTATCTCATTGTTTACCTATCGGCTCAGTCCCCGGA
326 GACCTGTCAGCTCAGTTTTTGGTCAACCTTTATCTCATTGTTTACCTATCGGCTCAGTCCCCGGA
18569 AAACCCATTACCCCTATGGTAACCT
391 AAACCCATTACCCCTATGGTAACCT
18594 ATTAGCTTAG
Statistics
Matches: 407, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
435 407 1.00
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (435 bp):
TTAAATGGGAAATTAAGCAATCTCTAAGGGTCTTAGATGACAGACTACCACATCTTCATAAGAAT
CCATCCTCTATTAACCACATTCAATCAAGTCCATTCTTGCTTGGTTGTGCTCGATTAGGCCTCAC
TCCGAACATCTTATATCCCTTGTTCGCCTGTCGGCTTAGTCCTAGGAAACAACCTTTATCTCTTT
GTCTACCTATTGGCTCAATCCTAGGAGACACCTTTACCGTATGGTGACTTGTCAGCTTCATCTCC
AATCAACCTTCATCTTTTTGTTTACTTGTCCGCTCAGTCCTCGGTAGACACAATTACCCTATGGT
GACCTGTCAGCTCAGTTTTTGGTCAACCTTTATCTCATTGTTTACCTATCGGCTCAGTCCCCGGA
AAACCCATTACCCCTATGGTAACCTTTATCTCATTTAATTCATCT
Found at i:18962 original size:42 final size:40
Alignment explanation
Indices: 18833--18963 Score: 111
Period size: 42 Copynumber: 3.1 Consensus size: 40
18823 ACCTATGGTG
* *
18833 ACCTATTAGCTCAGTCCTTGGTCAACCTTCATATTTTGTTT
1 ACCTATCAGCTCAGTCC-TGGTCAACCTTCATCTTTTGTTT
* * * ** * *
18874 ACCTGTC-GACTCAGTCCCTGGTAAATCCTTTATCCCTTGGTG
1 ACCTATCAG-CTCAGT-CCTGGTCAA-CCTTCATCTTTTGTTT
*
18916 ACCTATCAGCTCAGTCTCTGGTCAACCTTCATCTTTTCATTT
1 ACCTATCAGCTCAGTC-CTGGTCAACCTTCATCTTTT-GTTT
18958 ACCTAT
1 ACCTAT
18964 TGGCTTAGTC
Statistics
Matches: 67, Mismatches: 17, Indels: 11
0.71 0.18 0.12
Matches are distributed among these distances:
40 1 0.01
41 27 0.40
42 38 0.57
43 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.13, T:0.39
Consensus pattern (40 bp):
ACCTATCAGCTCAGTCCTGGTCAACCTTCATCTTTTGTTT
Found at i:19052 original size:85 final size:82
Alignment explanation
Indices: 18819--19076 Score: 250
Period size: 85 Copynumber: 3.1 Consensus size: 82
18809 GTTTAGACCT
* * * * * *
18819 TTACACCTATGGTGACCTATTAGCTCAGTCCTTGGTCAACCTTCATATTTTGTTTACCTGTCGAC
1 TTAC-CCT-TGGTGACCTATCAACTCAGTCCTCGGTCAACCTTCATCTTTTGTTTACCTGTTGGC
* * *
18884 TCAGTCCCTGGTAAATCCT
64 TTAGTCCCTGGTAAAACCC
* * *
18903 TTATCCCTTGGTGACCTATCAGCTCAGT-CTCTGGTCAACCTTCATCTTTTCATTTACCTATTGG
1 TTA-CCCTTGGTGACCTATCAACTCAGTCCTC-GGTCAACCTTCATCTTTT-GTTTACCTGTTGG
18967 CTTAGTCCCTGGTAAAACCC
63 CTTAGTCCCTGGTAAAACCC
* * * * *
18987 TTACACCTATGGTGGCTTGTCAACTTAGTCCTCGGTCAACCTTCATCTTCTTGTTTACATGTTGG
1 TTAC-CCT-TGGTGACCTATCAACTCAGTCCTCGGTCAACCTTCATCTT-TTGTTTACCTGTTGG
* *
19052 CTTTGT-CCTCGGTAAACCCC
63 CTTAGTCCCT-GGTAAAACCC
19072 TTACC
1 TTACC
19077 TTTTTTGGTG
Statistics
Matches: 146, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
82 2 0.01
83 37 0.25
84 42 0.29
85 60 0.41
86 5 0.03
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.37
Consensus pattern (82 bp):
TTACCCTTGGTGACCTATCAACTCAGTCCTCGGTCAACCTTCATCTTTTGTTTACCTGTTGGCTT
AGTCCCTGGTAAAACCC
Found at i:19119 original size:85 final size:85
Alignment explanation
Indices: 18819--19129 Score: 246
Period size: 85 Copynumber: 3.7 Consensus size: 85
18809 GTTTAGACCT
* * * * * * * *
18819 TTACACCTATGGTGACCTATTAGCTCAGTC-CTTGGTCAACCTTCATATT-TTGTTTACCTGTCG
1 TTACACCTTTGGTGACCTGTCAGCTTAGTCTC-TGGTCAACCTTCATCTTCTTGTTTACATATTG
* * * *
18882 ACTCAGTCCCTGGTAAATCCT
65 GCTTAGTCCCTGGTAAAACCC
* * * *
18903 TTATC-CC-TTGGTGACCTATCAGCTCAGTCTCTGGTCAACCTTCATCTT-TTCATTTACCTATT
1 TTA-CACCTTTGGTGACCTGTCAGCTTAGTCTCTGGTCAACCTTCATCTTCTT-GTTTACATATT
18965 GGCTTAGTCCCTGGTAAAACCC
64 GGCTTAGTCCCTGGTAAAACCC
* * * * *
18987 TTACACCTATGGTGGCTTGTCAACTTAGTC-CTCGGTCAACCTTCATCTTCTTGTTTACATGTTG
1 TTACACCTTTGGTGACCTGTCAGCTTAGTCTCT-GGTCAACCTTCATCTTCTTGTTTACATATTG
* *
19051 GCTTTGT-CCTCGGTAAACCCC
65 GCTTAGTCCCT-GGTAAAACCC
* * *
19072 TTAC-CTTTTTTGGTGACCTGTCAGCTTAGTCTCTTGTCAA-CTCCATC-TCATTGTTTAC
1 TTACAC--CTTTGGTGACCTGTCAGCTTAGTCTCTGGTCAACCTTCATCTTC-TTGTTTAC
19130 TCGTCAGCCC
Statistics
Matches: 187, Mismatches: 28, Indels: 23
0.79 0.12 0.10
Matches are distributed among these distances:
83 39 0.21
84 45 0.24
85 75 0.40
86 26 0.14
87 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.39
Consensus pattern (85 bp):
TTACACCTTTGGTGACCTGTCAGCTTAGTCTCTGGTCAACCTTCATCTTCTTGTTTACATATTGG
CTTAGTCCCTGGTAAAACCC
Found at i:20341 original size:166 final size:165
Alignment explanation
Indices: 20141--20705 Score: 603
Period size: 166 Copynumber: 3.4 Consensus size: 165
20131 AATTATGAGA
* *
20141 TTTT-TTCTCCGTAAATGTTTTCGGGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATCAAA
1 TTTTCTTCTCCGTAAATGTTTTTGGGAGGATTTTTCTTGATTTTTAATTTTTAAAATTCATCAAA
* * **
20205 TACTATTATTTAATTCATATTAGCTTAGTTTTCAAAAAAAT-ATTCATTTTCATGAGTTTTTCCT
66 TATTATTATTTATTTCATATTAAATTAGTTTTCAAAAAAATCATTCATTTTCATGAGTTTTTCCT
20269 TTTTTCCTTGAAATTCTCCTATTTTCAAAGTACAAAG
131 TTTTTCCTTGAAATT-TCCTATTTTCAAA-TACAAAG
* * * *
20306 TTTTCTTCTCCGTAAATTTTTTTGAGG-GGATTTTTCTTGGTTTTTAATTTTTAAAATTTATAAA
1 TTTTCTTCTCCGTAAATGTTTTTG-GGAGGATTTTTCTTGATTTTTAATTTTTAAAATTCATCAA
*
20370 ATATTATTATTTATTTCATATTAAATT--TTTTAAAAAAAATTCATTCATTTTCATGAGTTTTTC
65 ATATTATTATTTATTTCATATTAAATTAGTTTTCAAAAAAA-TCATTCATTTTCATGAGTTTTTC
* * * *
20433 ATTTTTACCTTGAAATTTCTCTATTTTCGAAATACAGAT
129 CTTTTTTCCTTGAAATTTC-CTATTTTC-AAATACAAAG
* ** * * *
20472 TTTTCTACTTTGTAAATTTTTTTGGGTA-GATTTTTCTTGGTTTTTAATTTTTAAAATTTATCAA
1 TTTTCTTCTCCGTAAATGTTTTTGGG-AGGATTTTTCTTGATTTTTAATTTTTAAAATTCATCAA
* * * * *
20536 ATGTTATTATTTGTTTCATATTAAATCAGTTTTC-AAAAATTCACTCATGTTT-ATGAGTTTTT-
65 ATATTATTATTTATTTCATATTAAATTAGTTTTCAAAAAAATCATTCAT-TTTCATGAGTTTTTC
* * * *
20598 CATTTTTCCTTCAAATTTTCCTATTTCCAAA-A-AATCG
129 CTTTTTTCCTTGAAA-TTTCCTATTTTCAAATACAA-AG
* * * * * ** *
20635 TGTTTTTTACTTCATAAATGTTTTTGGGGGGATTTTTCTCGATTTAAAATTTTTAAAATTCATCT
1 T-TTTCTT-CTCCGTAAATGTTTTTGGGAGGATTTTTCTTGATTTTTAATTTTTAAAATTCATCA
20700 AATATT
64 AATATT
20706 GGCATTTAAC
Statistics
Matches: 338, Mismatches: 46, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
162 1 0.00
163 2 0.01
164 18 0.05
165 77 0.23
166 223 0.66
167 13 0.04
168 4 0.01
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.52
Consensus pattern (165 bp):
TTTTCTTCTCCGTAAATGTTTTTGGGAGGATTTTTCTTGATTTTTAATTTTTAAAATTCATCAAA
TATTATTATTTATTTCATATTAAATTAGTTTTCAAAAAAATCATTCATTTTCATGAGTTTTTCCT
TTTTTCCTTGAAATTTCCTATTTTCAAATACAAAG
Found at i:26207 original size:18 final size:19
Alignment explanation
Indices: 26164--26211 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
26154 ATTTAGCTTA
* *
26164 TTTTTTCTATTTTCTTTCTT
1 TTTTTTCT-TTTCCTTTCAT
26184 TTTTTTCTTTTCCTTT-AT
1 TTTTTTCTTTTCCTTTCAT
26202 TTTTTTCTTT
1 TTTTTTCTTT
26212 ATTTTTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
19 7 0.27
20 8 0.31
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTTCTTTTCCTTTCAT
Found at i:26218 original size:13 final size:13
Alignment explanation
Indices: 26171--26219 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
26161 TTATTTTTTC
*
26171 TATTTTCTTTCTT
1 TATTTTTTTTCTT
*
26184 TTTTTTCTTTTCCTT
1 TATTTT-TTTT-CTT
26199 TA-TTTTTTTCTT
1 TATTTTTTTTCTT
26211 TATTTTTTT
1 TATTTTTTT
26220 ATCCACTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 5 0.17
13 15 0.50
14 6 0.20
15 4 0.13
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (13 bp):
TATTTTTTTTCTT
Found at i:26219 original size:12 final size:12
Alignment explanation
Indices: 26171--26219 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 12
26161 TTATTTTTTC
26171 TATTTTCTTTCTTT
1 TATTTT-TTTC-TT
*
26185 TTTTTCTTTTCCTT
1 TATTT-TTTT-CTT
26199 TATTTTTTTCTT
1 TATTTTTTTCTT
26211 TATTTTTTT
1 TATTTTTTT
26220 ATCCACTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 12 0.39
13 4 0.13
14 13 0.42
15 2 0.06
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (12 bp):
TATTTTTTTCTT
Found at i:26868 original size:166 final size:167
Alignment explanation
Indices: 26622--27031 Score: 486
Period size: 166 Copynumber: 2.5 Consensus size: 167
26612 AAATGTTTGT
* *
26622 GGAATGGAAAACTCG-AGTTTTCGAAAACAAAAGAATTTCAA--ATAAAAAATG---AA---ATG
1 GGAATAGAAAACTCGAATTTTTC-AAAACAAAAGAATTTCAAGGA-AAAAAATGAAAAACTCATG
* * * * *
26678 AAAATAAATAAATTTTTGAAAACTGATTTACTATGATTTAAATAAAGATATTTTATGATTATTAA
64 AAAATAAATGAATTTTTCAAAACTGATTTACTATGATTTAAATAAAGATATTTGAAGAATATTAA
* * *
26743 AAATTTTGAACTAAGAAAAATTCCCCCTGAAAATATTTAC
129 AAATTTTGAACCAAGAAAAA-CCCCCCCGAAAATATTTAC
* * * *
26783 GGAATGGAAAACT-TAATTTTTCAAAA-ATAAGCAATTTCAAGGAAAAAAATG-AAAACTTATGA
1 GGAATAGAAAACTCGAATTTTTCAAAACAAAAG-AATTTCAAGGAAAAAAATGAAAAACTCATGA
* *
26845 AAATAAATGAATTTTTCAAAACTGATTTACTATGATTTAAATGATGATATTTGAAGAATATTAAA
65 AAATAAATGAATTTTTCAAAACTGATTTACTATGATTTAAATAAAGATATTTGAAGAATATTAAA
* *
26910 AATTTTGAACCGAGAAAAACCCCCCCGAAAATATTTAT
130 AATTTTGAACCAAGAAAAACCCCCCCGAAAATATTTAC
* * * *
26948 GGAATAGAAAACTCGATTTTTTGAAAACAAAAGAATTTTAGGGAAAAAAATGAAAAACTCAT-AA
1 GGAATAGAAAACTCGAATTTTTCAAAACAAAAGAATTTCAAGGAAAAAAATGAAAAACTCATGAA
*
27012 AATAAATGAATTTTACAAAA
66 AATAAATGAATTTTTCAAAA
27032 TTTATAGAAA
Statistics
Matches: 213, Mismatches: 24, Indels: 19
0.83 0.09 0.07
Matches are distributed among these distances:
159 4 0.02
160 12 0.06
161 27 0.13
162 1 0.00
163 2 0.01
165 28 0.13
166 127 0.60
167 12 0.06
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (167 bp):
GGAATAGAAAACTCGAATTTTTCAAAACAAAAGAATTTCAAGGAAAAAAATGAAAAACTCATGAA
AATAAATGAATTTTTCAAAACTGATTTACTATGATTTAAATAAAGATATTTGAAGAATATTAAAA
ATTTTGAACCAAGAAAAACCCCCCCGAAAATATTTAC
Found at i:30902 original size:90 final size:90
Alignment explanation
Indices: 30758--31086 Score: 412
Period size: 91 Copynumber: 3.6 Consensus size: 90
30748 GCACTGACCA
* * * * * *
30758 CACATTCCCCAATCATATCC-CTTTTCGTTAACCACTAGATAGTATTGACGCATCATATAATCCA
1 CACATTTCCCAATCATATCCTC-TTTC-TCAACCACTAGATGGTACTAATGCATCATATAATCCA
30822 AGATCTTCGGGGCAAGGATATCCCAAC
64 AGATCTTCGGGGCAAGGATATCCCAAC
*
30849 CACATTTCCCAATCATATCCTCTTTCTTAACCACTAGATGGTACTAATGCATCATATAATCCAAG
1 CACATTTCCCAATCATATCCTCTTTCTCAACCACTAGATGGTACTAATGCATCATATAATCCAAG
* *
30914 ATCTCCGTGGCAAGGATATCCCAAC
66 ATCTTCGGGGCAAGGATATCCCAAC
* * *
30939 CACATTTTGCCAATCATATCTTCTTTCTCAACCACTAGATGGTACTGATGCATCATATAAATCCA
1 CACA-TTTCCCAATCATATCCTCTTTCTCAACCACTAGATGGTACTAATGCATCATAT-AATCCA
* *
31004 AGATC-TCTGGGGCAAAGATATCCTAAC
64 AGATCTTC-GGGGCAAGGATATCCCAAC
* * *
31031 CGCATATTCCTAATCATATCCTTTTTCCTCAACCACTAGATGGTA-TCAATGCATCA
1 CACAT-TTCCCAATCATATCCTCTTT-CTCAACCACTAGATGGTACT-AATGCATCA
31087 CAAAGCTTGG
Statistics
Matches: 210, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
90 62 0.30
91 74 0.35
92 48 0.23
93 26 0.12
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (90 bp):
CACATTTCCCAATCATATCCTCTTTCTCAACCACTAGATGGTACTAATGCATCATATAATCCAAG
ATCTTCGGGGCAAGGATATCCCAAC
Found at i:30995 original size:91 final size:90
Alignment explanation
Indices: 30787--31075 Score: 400
Period size: 90 Copynumber: 3.2 Consensus size: 90
30777 CCTTTTCGTT
* * * *
30787 AACCACTAGATAGTATTGACGCATCATATAATCCAAGATCTTCGGGGCAAGGATATCCCAACCAC
1 AACCACTAGATGGTACTGATGCATCATATAATCCAAGATCTCCGGGGCAAGGATATCCCAACCAC
* * *
30852 ATTTCCCAATCATATCCTCTTTCTT
66 ATTTTCCAATCATATCTTCTTTCTC
* *
30877 AACCACTAGATGGTACTAATGCATCATATAATCCAAGATCTCCGTGGCAAGGATATCCCAACCAC
1 AACCACTAGATGGTACTGATGCATCATATAATCCAAGATCTCCGGGGCAAGGATATCCCAACCAC
30942 ATTTTGCCAATCATATCTTCTTTCTC
66 ATTTT-CCAATCATATCTTCTTTCTC
* * * *
30968 AACCACTAGATGGTACTGATGCATCATATAAATCCAAGATCTCTGGGGCAAAGATATCCTAACCG
1 AACCACTAGATGGTACTGATGCATCATAT-AATCCAAGATCTCCGGGGCAAGGATATCCCAACCA
*
31033 CATATTCCTAATCATATCCTT-TTTCCTC
65 CATTTTCC-AATCATAT-CTTCTTT-CTC
31061 AACCACTAGATGGTA
1 AACCACTAGATGGTA
31076 TCAATGCATC
Statistics
Matches: 178, Mismatches: 16, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
90 63 0.35
91 48 0.27
92 46 0.26
93 21 0.12
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (90 bp):
AACCACTAGATGGTACTGATGCATCATATAATCCAAGATCTCCGGGGCAAGGATATCCCAACCAC
ATTTTCCAATCATATCTTCTTTCTC
Found at i:31487 original size:20 final size:20
Alignment explanation
Indices: 31458--31519 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
31448 TATCGGTATA
*
31458 ATAAGTGAATGTATCGATAC
1 ATAAGGGAATGTATCGATAC
*
31478 ATAAGGGAATGTATCAATAC
1 ATAAGGGAATGTATCGATAC
** *
31498 ATATTTGAAATGTATCGATAC
1 ATA-AGGGAATGTATCGATAC
31519 A
1 A
31520 GGACCATGTC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
20 21 0.60
21 14 0.40
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ATAAGGGAATGTATCGATAC
Found at i:31611 original size:31 final size:32
Alignment explanation
Indices: 31576--31656 Score: 110
Period size: 32 Copynumber: 2.6 Consensus size: 32
31566 TACATTTTTC
*
31576 ATTATATGGATACATTCT-GGGTTTTGACCTA
1 ATTATATTGATACATTCTAGGGTTTTGACCTA
* *
31607 ATTATATTGATACATTCTAGGTTTTTGGCCTA
1 ATTATATTGATACATTCTAGGGTTTTGACCTA
* *
31639 AATGTATTGATACATTCT
1 ATTATATTGATACATTCT
31657 TCATTGTGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 17 0.39
32 27 0.61
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.44
Consensus pattern (32 bp):
ATTATATTGATACATTCTAGGGTTTTGACCTA
Found at i:33774 original size:141 final size:141
Alignment explanation
Indices: 33520--33781 Score: 434
Period size: 141 Copynumber: 1.9 Consensus size: 141
33510 CTAGAAAGCG
* *
33520 ATTTTTTGAGATTTTTAAAATATTTTTAGATAAACCCTCTTTGAGTCAACTTTCTAATAGTACCT
1 ATTTTTTGAGATTTTTAAAATATTTTTAGATAAACCATCTTTGAGTCAACTTTCTAACAGTACCT
* * *
33585 TGTCCATTCTCCAAAACCTTCAAACTAACTTAAAATAAATTCAGAAAATAGGACAGTACCTTTCT
66 TGTCCATTCTCCAAAACCTTCAAAATAACTCAAAACAAATTCAGAAAATAGGACAGTACCTTTCT
33650 AACAAAAAGTA
131 AACAAAAAGTA
*
33661 ATTTTTTGAGATTTTTAAAATATTTTTAGATAAACCATCTTTGAGTCACCTTTCTAACAGTACCT
1 ATTTTTTGAGATTTTTAAAATATTTTTAGATAAACCATCTTTGAGTCAACTTTCTAACAGTACCT
* * * *
33726 TGTCCGTTCTCTAAAACCTTCAAAATAACTCAAAACAAATTTAGAAAATGGGACAG
66 TGTCCATTCTCCAAAACCTTCAAAATAACTCAAAACAAATTCAGAAAATAGGACAG
33782 CGCGATGTTG
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
141 111 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (141 bp):
ATTTTTTGAGATTTTTAAAATATTTTTAGATAAACCATCTTTGAGTCAACTTTCTAACAGTACCT
TGTCCATTCTCCAAAACCTTCAAAATAACTCAAAACAAATTCAGAAAATAGGACAGTACCTTTCT
AACAAAAAGTA
Found at i:36335 original size:40 final size:40
Alignment explanation
Indices: 36225--36336 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
36215 ATCAGTTTTG
* *
36225 CCCTAGCCAACCTTTTAATTGGTTGACTTTGTTAATTTCG
1 CCCTAGCCAACCTTTTAATTGGTTGACTTTATTAATTTCA
* * * * * **
36265 CCCTTGTCAACCCTTATACTT-GTTGGCTTTATTGGTTTCA
1 CCCTAGCCAA-CCTTTTAATTGGTTGACTTTATTAATTTCA
*
36305 CCCTGGCCAACCTTTTAATTGGTTGACTTTAT
1 CCCTAGCCAACCTTTTAATTGGTTGACTTTAT
36337 CAGTTTTGTC
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
39 8 0.14
40 40 0.71
41 8 0.14
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.43
Consensus pattern (40 bp):
CCCTAGCCAACCTTTTAATTGGTTGACTTTATTAATTTCA
Found at i:36355 original size:80 final size:80
Alignment explanation
Indices: 36206--36413 Score: 222
Period size: 80 Copynumber: 2.6 Consensus size: 80
36196 TAGGCAACTC
* * * * *
36206 GTTGGCTTTATCAGTTTTGCCCTAGCCAACCTTTTAATTGGTTGACTTTGTTAATTTCGCCCTTG
1 GTTGGCTTTATCGGTTTTGCCCTGGCCAACCTTTTAATTGGTTGACTTTATCAATTTCGCCCATG
36271 TCAACCCTTA-TACTT
66 TCAA-CCTTACTACTT
* ** * * *
36286 GTTGGCTTTATTGGTTTCACCCTGGCCAACCTTTTAATTGGTTGACTTTATCAGTTTTG-TCATG
1 GTTGGCTTTATCGGTTTTGCCCTGGCCAACCTTTTAATTGGTTGACTTTATCAATTTCGCCCATG
*
36350 ATCAACCTTACTATTT
66 -TCAACCTTACTACTT
* * ** * *
36366 GTTGGTTTTATCGATTTTGCTTTGGCCAACCTTTTAATTAGTTTACTT
1 GTTGGCTTTATCGGTTTTGCCCTGGCCAACCTTTTAATTGGTTGACTT
36414 ATGGTTTTGC
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 8 0.08
80 97 0.92
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (80 bp):
GTTGGCTTTATCGGTTTTGCCCTGGCCAACCTTTTAATTGGTTGACTTTATCAATTTCGCCCATG
TCAACCTTACTACTT
Found at i:36729 original size:42 final size:42
Alignment explanation
Indices: 36677--36901 Score: 154
Period size: 42 Copynumber: 5.3 Consensus size: 42
36667 AGTAAATCTT
*
36677 TTTATCCTTTGGTGACTTGTCGATTCAATCTTGGTCAACTTC
1 TTTATCCTTTGTTGACTTGTCGATTCAATCTTGGTCAACTTC
* * * * * *
36719 TTTATCCTTTGTTTACTTATCGGCTT-AGTCTTGGGT-AAATCC
1 TTTATCCTTTGTTGACTTGTC-GATTCAATCTT-GGTCAACTTC
* *
36761 TTTTATCCTTTGTTGACTTGAC-AGTTCATTCTTGGTCAACTTC
1 -TTTATCCTTTGTTGACTTGTCGA-TTCAATCTTGGTCAACTTC
* * * * * * * *
36804 TTTATCCTTTGTTTACATGTTGGCTT-AGTCCTGGGT-AAATCC
1 TTTATCCTTTGTTGACTTG-TCGATTCAAT-CTTGGTCAACTTC
* * ** *
36846 TTTTATCCTTTGTTGACTGGTCGGTTCAATCAAGATCAACTTC
1 -TTTATCCTTTGTTGACTTGTCGATTCAATCTTGGTCAACTTC
36889 TTTATCCTTTGTT
1 TTTATCCTTTGTT
36902 TACCTGTCAA
Statistics
Matches: 137, Mismatches: 34, Indels: 24
0.70 0.17 0.12
Matches are distributed among these distances:
42 75 0.55
43 62 0.45
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (42 bp):
TTTATCCTTTGTTGACTTGTCGATTCAATCTTGGTCAACTTC
Found at i:36734 original size:85 final size:85
Alignment explanation
Indices: 36589--36941 Score: 372
Period size: 85 Copynumber: 4.2 Consensus size: 85
36579 TCAAGTATCA
* * ** * * *
36589 CCTTTTATCCTTTGTTGACTTGTCGGTTAAATCCCGATTAAC--CTTTCAATCCTTTATTTACCT
1 CCTTTTATCCTTTGTTGACTTGTCGATTCAATCTTGGTCAACTTCTTT--ATCCTTTGTTTACCT
* * *
36652 ATCAGCTCAATCCAGAGTAAAT
64 ATCAGCTTAGTCCAGGGTAAAT
* * *
36674 CTTTTTATCCTTTGGTGACTTGTCGATTCAATCTTGGTCAACTTCTTTATCCTTTGTTTACTTAT
1 CCTTTTATCCTTTGTTGACTTGTCGATTCAATCTTGGTCAACTTCTTTATCCTTTGTTTACCTAT
* **
36739 CGGCTTAGTCTTGGGTAAAT
66 CAGCTTAGTCCAGGGTAAAT
* * * *
36759 CCTTTTATCCTTTGTTGACTTGAC-AGTTCATTCTTGGTCAACTTCTTTATCCTTTGTTTACATG
1 CCTTTTATCCTTTGTTGACTTGTCGA-TTCAATCTTGGTCAACTTCTTTATCCTTTGTTTACCTA
** *
36823 TTGGCTTAGTCCTGGGTAAAT
65 TCAGCTTAGTCCAGGGTAAAT
* * ** * *
36844 CCTTTTATCCTTTGTTGACTGGTCGGTTCAATCAAGATCAACTTCTTTATCCTTTGTTTACCTGT
1 CCTTTTATCCTTTGTTGACTTGTCGATTCAATCTTGGTCAACTTCTTTATCCTTTGTTTACCTAT
*
36909 CAACTTAGT-CACGGGTAAAT
66 CAGCTTAGTCCA-GGGTAAAT
36929 CCTTTTATCCTTT
1 CCTTTTATCCTTT
36942 TATCCTAGTT
Statistics
Matches: 227, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
84 2 0.01
85 221 0.97
87 4 0.02
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (85 bp):
CCTTTTATCCTTTGTTGACTTGTCGATTCAATCTTGGTCAACTTCTTTATCCTTTGTTTACCTAT
CAGCTTAGTCCAGGGTAAAT
Found at i:36771 original size:43 final size:43
Alignment explanation
Indices: 36719--36859 Score: 146
Period size: 43 Copynumber: 3.3 Consensus size: 43
36709 GGTCAACTTC
36719 TTTATCCTTTGTTTACTTATCGGCTTAGTCTTGGGTAAATCCT
1 TTTATCCTTTGTTTACTTATCGGCTTAGTCTTGGGTAAATCCT
* * * * *
36762 TTTATCCTTTGTTGACTTGA-CAG-TTCATTCTT-GGTCAA-CTT
1 TTTATCCTTTGTTTACTT-ATCGGCTT-AGTCTTGGGTAAATCCT
* * * *
36803 CTTTATCCTTTGTTTACATGTTGGCTTAGTCCTGGGTAAATCCT
1 -TTTATCCTTTGTTTACTTATCGGCTTAGTCTTGGGTAAATCCT
36847 TTTATCCTTTGTT
1 TTTATCCTTTGTT
36860 GACTGGTCGG
Statistics
Matches: 77, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
41 2 0.03
42 28 0.36
43 44 0.57
44 3 0.04
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.50
Consensus pattern (43 bp):
TTTATCCTTTGTTTACTTATCGGCTTAGTCTTGGGTAAATCCT
Found at i:37004 original size:154 final size:154
Alignment explanation
Indices: 36798--37095 Score: 382
Period size: 154 Copynumber: 1.9 Consensus size: 154
36788 ATTCTTGGTC
* * * ** * *
36798 AACTTCTTTATCCTTTGTTTACATGTTGGCTTAGTCCTGGGTAAATCCTTTTATCCTTTGTTGAC
1 AACTTCTTTATCCTTTGTTTACATATCGACTTAGTCCCAGGTAAATCCTTTTATCATTTGTTAAC
* * *
36863 TGGTCGGTTCAA-TCAAGATCAACTTCTTTATCCTTTGTTTACCTGTCAACTTAGTCACGGGTAA
66 TGGTCAGTTCAATTCAAG-TCAACTTCTTTATCCTTTGTTTACCTATCAACTTAGTCACAGGTAA
36927 ATCCTTTTATCCTTTTATCCTAGTT
130 ATCCTTTTATCCTTTTATCCTAGTT
* * *
36952 AACTTTTTTATCCTTTGTTTACCTATCGACTTAGTCCCAGGTAAATCTTTTTATCATTTGTTAAC
1 AACTTCTTTATCCTTTGTTTACATATCGACTTAGTCCCAGGTAAATCCTTTTATCATTTGTTAAC
* * ** * * * *
37017 TTGTCAGTTTAATTCCTGTCAACTTCTTTATCCTTTGTTTATCTATCGATTTAGTCCCAGGTAAA
66 TGGTCAGTTCAATTCAAGTCAACTTCTTTATCCTTTGTTTACCTATCAACTTAGTCACAGGTAAA
*
37082 TCCTTTTCTCCTTT
131 TCCTTTTATCCTTT
37096 GTTAACCTAT
Statistics
Matches: 121, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
154 118 0.98
155 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (154 bp):
AACTTCTTTATCCTTTGTTTACATATCGACTTAGTCCCAGGTAAATCCTTTTATCATTTGTTAAC
TGGTCAGTTCAATTCAAGTCAACTTCTTTATCCTTTGTTTACCTATCAACTTAGTCACAGGTAAA
TCCTTTTATCCTTTTATCCTAGTT
Found at i:38762 original size:332 final size:331
Alignment explanation
Indices: 38195--38956 Score: 850
Period size: 332 Copynumber: 2.3 Consensus size: 331
38185 AGTTTTTAAC
* * ** * *
38195 TTCAAAATTCTTCAAATATTATTATTTAATTATAATTAAATTAGTTTTCCAAAATCCCTTTTGTT
1 TTCAAAATTCATCAAATATTA-TAATTAATTA-AATTAAATTAGTTTTAAAAAATTCC-TTTATT
* * * * *
38260 TCATAAGTTTTTCA--TTTTTCCATT-AAATTCTTCATATTTTTGAAATATGGAATTTTCTTCTC
63 TCATAAGTTTTTCATTTTTTTCC-TTGAAATTC-TCCTATTCTAGAAATATAGAATTTTCTACTC
* * * * * *
38322 CGTAAATTTTTTCGAGAGGATTTTTATCGGTTCAAAATTTTTAATATTCATCAAATATTATTATT
126 CGTAAATGTTTTCGAGAGGATTTTTATCAGTTCAAAATTTTTAAAATTCATAAAATATCATCATT
* * *
38387 TTACTCATATTAAATCAGTTTTGAAAAATCCATTTATTTTCATGAGTTTTTTC-ATTTTTCCTTA
191 TAACTCACATTAAATCAGTTTTGAAAAATCCATTTATTTTCATGAATTTTTTCAATTTTTCCTTA
* *
38451 AAATTCCCTTA-TTTCTAAAATACGGAGTTTTCTACTCCGTAAATGTTTGCGCAGGGATTTGTCT
256 AAATTCCCTTATTTTC-AAAATACGGAGTGTTCTACTCCATAAATGTTTGCGCAGGGATTTGTCT
*
38515 TGGTTTATAATT
320 TAGTTTATAATT
* *
38527 TTCAAAATTCATCAAATATTATCATATAATTCAAATTAAATTAGTTTTGAAAAATTCCTTTATTT
1 TTCAAAATTCATCAAATATTATAAT-TAATT-AAATTAAATTAGTTTTAAAAAATTCCTTTATTT
* * **
38592 CATTAGTTTTTCATTTTTTTCCTTGAAATTCTCCTATCTCTAG-AATATAGAGTTTTCTACTTTG
64 CATAAGTTTTTCATTTTTTTCCTTGAAATTCTCCTAT-TCTAGAAATATAGAATTTTCTACTCCG
* * * * *
38656 TAAATGTTTTC-AGGGGGATTTTTCTTAGTTTATAATTTTTAAAATTCATAAAATATCATCATTT
128 TAAATGTTTTCGA-GAGGATTTTTATCAGTTCAAAATTTTTAAAATTCATAAAATATCATCATTT
* * *
38720 AACTCACATTAAATCAGTTTTGAAAAATTGCTTTTA-TTTCATGAATTTTTTCAAATTTTTGCTT
192 AACTCACATTAAATCAGTTTTGAAAAA-TCCATTTATTTTCATGAATTTTTTC-AATTTTTCCTT
* * * * * ** *
38784 GAAATTCTCTTGTTTTCAAAATATGGAGTGTTCTACTCCATAAATGTTTTCGGGGGGATTTTTCT
255 AAAATTCCCTTATTTTCAAAATACGGAGTGTTCTACTCCATAAATGTTTGCGCAGGGATTTGTCT
38849 TAGTTTATAATT
320 TAGTTTATAATT
* * * *
38861 TTTAAAATTCATCAAA-ATT-TAATTAA-T--ACTAAATTAGCTTTAAAAAATTCATTTATTTTC
1 TTCAAAATTCATCAAATATTATAATTAATTAAATTAAATTAGTTTTAAAAAATTCCTTTA-TTTC
* *
38921 ATAAGTTTTTCATTTTTTT-TTTGAAATTTTCCTATT
65 ATAAGTTTTTCATTTTTTTCCTTGAAATTCTCCTATT
38957 TTCAAAAATC
Statistics
Matches: 365, Mismatches: 53, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
326 1 0.00
327 38 0.10
328 22 0.06
330 1 0.00
331 24 0.07
332 164 0.45
333 26 0.07
334 85 0.23
335 4 0.01
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (331 bp):
TTCAAAATTCATCAAATATTATAATTAATTAAATTAAATTAGTTTTAAAAAATTCCTTTATTTCA
TAAGTTTTTCATTTTTTTCCTTGAAATTCTCCTATTCTAGAAATATAGAATTTTCTACTCCGTAA
ATGTTTTCGAGAGGATTTTTATCAGTTCAAAATTTTTAAAATTCATAAAATATCATCATTTAACT
CACATTAAATCAGTTTTGAAAAATCCATTTATTTTCATGAATTTTTTCAATTTTTCCTTAAAATT
CCCTTATTTTCAAAATACGGAGTGTTCTACTCCATAAATGTTTGCGCAGGGATTTGTCTTAGTTT
ATAATT
Found at i:38842 original size:168 final size:166
Alignment explanation
Indices: 38198--39028 Score: 676
Period size: 166 Copynumber: 5.0 Consensus size: 166
38188 TTTTAACTTC
* * * * * ** * * *
38198 AAAATTCTTCAAATATTATTATTTAA-TTATAATTAAATTAGTTTTCCAAAATCCCTTTTGTTTC
1 AAAATTCATAAAATATTATCATTTAACTCA-AATTAAATCAGTTTTGAAAAAT-TCATTTATTTC
* * * * * *
38262 AT-AAGTTTTTC-ATTTTTCCATT-AAATTCTTCATATTTTTGAAATATGGAATTTTCTTCTCCG
64 ATGAATTTTTTCAATTTTTCC-TTGAAATTC-TCTTATTTCTAAAATATGGAGTTTTCTACTCCG
* * * * ** * *
38324 TAAATTTTTTCGAGAGGATTTTTATCGGTTCAAAATTTTT
127 TAAATGTTTTCGGGGGGATTTTTCTTAGTTTATAATTTTT
* * * * * *
38364 AATATTCATCAAATATTATTATTTTACTCATATTAAATCAGTTTTGAAAAATCCATTTATTTTCA
1 AAAATTCATAAAATATTATCATTTAACTCAAATTAAATCAGTTTTGAAAAATTCATTTA-TTTCA
* * * *
38429 TGAGTTTTTTC-ATTTTTCCTTAAAATTCCCTTATTTCTAAAATACGGAGTTTTCTACTCCGTAA
65 TGAATTTTTTCAATTTTTCCTTGAAATTCTCTTATTTCTAAAATATGGAGTTTTCTACTCCGTAA
* ** * * *
38493 ATGTTTGCGCAGGGATTTGTCTTGGTTTATAATTTTC
130 ATGTTTTCGGGGGGATTTTTCTTAGTTTATAATTTTT
* * * * *
38530 AAAATTCATCAAATATTATCATATAATTCAAATTAAATTAGTTTTGAAAAATTCCTTTATTTCAT
1 AAAATTCATAAAATATTATCATTTAACTCAAATTAAATCAGTTTTGAAAAATTCATTTATTTCAT
* * * * * * * **
38595 -TAGTTTTTCATTTTTTTCCTTGAAATTCTCCTATCTCTAGAATATAGAGTTTTCTACTTTGTAA
66 GAATTTTTTCA-ATTTTTCCTTGAAATTCTCTTATTTCTAAAATATGGAGTTTTCTACTCCGTAA
*
38659 ATGTTTTCAGGGGGATTTTTCTTAGTTTATAATTTTT
130 ATGTTTTCGGGGGGATTTTTCTTAGTTTATAATTTTT
* * *
38696 AAAATTCATAAAATATCATCATTTAACTCACATTAAATCAGTTTTGAAAAATTGCTTTTATTTCA
1 AAAATTCATAAAATATTATCATTTAACTCAAATTAAATCAGTTTTGAAAAATT-CATTTATTTCA
* * * *
38761 TGAATTTTTTCAAATTTTTGCTTGAAATTCTCTTGTTT-TCAAAATATGGAGTGTTCTACTCCAT
65 TGAATTTTTTC-AATTTTTCCTTGAAATTCTCTTATTTCT-AAAATATGGAGTTTTCTACTCCGT
38825 AAATGTTTTCGGGGGGATTTTTCTTAGTTTATAATTTTT
128 AAATGTTTTCGGGGGGATTTTTCTTAGTTTATAATTTTT
* * * *
38864 AAAATTCATCAAAAT-TTA--A-TTAA-T---ACTAAATTAGCTTTAAAAAATTCATTTATTTTC
1 AAAATTCAT-AAAATATTATCATTTAACTCAAATTAAATCAGTTTTGAAAAATTCATTTA-TTTC
* * ** * * * * *
38921 AT-AAGTTTTTCATTTTTTTTTTGAAATTTTCCTATTT-TCAAAA-ATCGA-TTTTCTATTCCAT
64 ATGAATTTTTTCAATTTTTCCTTGAAATTCTCTTATTTCT-AAAATATGGAGTTTTCTACTCCGT
* * * * **
38982 AAATATTTTTGGGTGGATGTTTCTCGGTTTA-ACATTTTT
128 AAATGTTTTCGGGGGGATTTTTCTTAGTTTATA-ATTTTT
39021 AAAATTCA
1 AAAATTCA
39029 CCTAACATTG
Statistics
Matches: 550, Mismatches: 102, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 50 0.09
158 4 0.01
159 26 0.05
160 13 0.02
161 24 0.04
164 7 0.01
165 15 0.03
166 275 0.50
167 35 0.06
168 94 0.17
169 6 0.01
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (166 bp):
AAAATTCATAAAATATTATCATTTAACTCAAATTAAATCAGTTTTGAAAAATTCATTTATTTCAT
GAATTTTTTCAATTTTTCCTTGAAATTCTCTTATTTCTAAAATATGGAGTTTTCTACTCCGTAAA
TGTTTTCGGGGGGATTTTTCTTAGTTTATAATTTTT
Found at i:41138 original size:148 final size:145
Alignment explanation
Indices: 40935--41489 Score: 517
Period size: 148 Copynumber: 3.8 Consensus size: 145
40925 TCCTGTCCTT
* * * ** * *
40935 CTAGGATACTTTCATGTCGAAGG--TACGCATAGGGGGCATTTTTGTGATTTTTCTAGAATGGAG
1 CTAGGATACTTTCATAT-AAAGGTATACCCATA-GGGGCATTTTCATAATTTTTCTAGAAT-AAG
* * *
40998 TCCTAATTTGTCACTAGGTCACTTTTATGCCAAAGGTATGTATTAGGCATCA-ATTTGCTTTTCC
63 TCCTAATTTGTCACTAGGTCACTTCTATGCCGAAGGTATGTATTAGGCAT-AGGTTTGCTTTTCC
41062 TTTGTAAGTCCTTTAGGATTA
127 TTT-TAAGTCCTTTAGG-TTA
* * *
41083 TTAGG-TACTTTCATATAGAAGGTATACCCATAGGGGCATTTTCATGATTTTTCTAGAACCAAGT
1 CTAGGATACTTTCATATA-AAGGTATACCCATAGGGGCATTTTCATAATTTTTCTAGAA-TAAGT
* * * * *
41147 CCTAATTTGTCAC-CGGATCACATCTATGCCGAAGGTACGTATTATGCATAGGTTTGCTTTTTCT
64 CCTAATTTGTCACTAGG-TCACTTCTATGCCGAAGGTATGTATTAGGCATAGGTTTGC-TTTTCC
*
41211 TTTTAAGTTCTTTAGGGTTA
127 TTTTAAGTCCTTTA-GGTTA
* * * * ** * * * *
41231 CCAAGATACTTTTATGTTAAAGGTATACTTAGAAGGGCATTTTCATAATTTTTCTAAAATTGAGT
1 CTAGGATACTTTCAT-ATAAAGGTATACCCATAGGGGCATTTTCATAATTTTTCTAGAA-TAAGT
** ** * * *
41296 CCTAATTTGTCACCGGGTTGCTTCTGTGCTGAGGGTATGTATTAGGCATAGGTTTGCTTTTCCTT
64 CCTAATTTGTCACTAGGTCACTTCTATGCCGAAGGTATGTATTAGGCATAGGTTTGCTTTTCCTT
41361 TTAAGTCCTTTAAGGTTA
129 TTAAGTCCTTT-AGGTTA
* * * ** * *
41379 CTAGGAAACTTTCATATCAAAGGTATATCCATAGGGGTATTTTTGTAATTTTTTTACAACTAAGT
1 CTAGGATACTTTCATAT-AAAGGTATACCCATAGGGGCATTTTCATAATTTTTCTAGAA-TAAGT
* * *
41444 CCTTATTTGTCACTAGGTCACTTCTATGCTGAGGGTATGTATTAGG
64 CCTAATTTGTCACTAGGTCACTTCTATGCCGAAGGTATGTATTAGG
41490 GATAAGTTCG
Statistics
Matches: 329, Mismatches: 65, Indels: 26
0.78 0.15 0.06
Matches are distributed among these distances:
147 18 0.05
148 199 0.60
149 108 0.33
150 4 0.01
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (145 bp):
CTAGGATACTTTCATATAAAGGTATACCCATAGGGGCATTTTCATAATTTTTCTAGAATAAGTCC
TAATTTGTCACTAGGTCACTTCTATGCCGAAGGTATGTATTAGGCATAGGTTTGCTTTTCCTTTT
AAGTCCTTTAGGTTA
Found at i:43446 original size:13 final size:13
Alignment explanation
Indices: 43428--43453 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43418 AATTTTTTTG
43428 TGTATCGATACAT
1 TGTATCGATACAT
43441 TGTATCGATACAT
1 TGTATCGATACAT
43454 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44192 original size:21 final size:21
Alignment explanation
Indices: 44151--44194 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
44141 CTCCTCTTTA
* *
44151 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
44172 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
44193 TC
1 TC
44195 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:46016 original size:13 final size:13
Alignment explanation
Indices: 45998--46022 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45988 TAATCACCCA
45998 GTATCGATACAAT
1 GTATCGATACAAT
46011 GTATCGATACAA
1 GTATCGATACAA
46023 AGAAAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:48120 original size:15 final size:15
Alignment explanation
Indices: 48100--48130 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48090 ATTTCGTTTG
*
48100 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
48115 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
48130 G
1 G
48131 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:49964 original size:21 final size:21
Alignment explanation
Indices: 49935--49979 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
49925 AAGTTTTCAT
*
49935 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
49955 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
49977 TTT
1 TTT
49980 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:52224 original size:13 final size:13
Alignment explanation
Indices: 52206--52231 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52196 AATTTTTTTG
52206 TGTATCGATACAT
1 TGTATCGATACAT
52219 TGTATCGATACAT
1 TGTATCGATACAT
52232 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:54078 original size:16 final size:15
Alignment explanation
Indices: 54046--54093 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
54036 GCTGGTTCAT
54046 CCAACCTTTTTTCTTTG
1 CCAA-CTTTTTT-TTTG
54063 CCAACTCTTTTTTTTG
1 CCAACT-TTTTTTTTG
* *
54079 TCAACTTTTTATTTG
1 CCAACTTTTTTTTTG
54094 ATTTTTTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 8 0.29
16 11 0.39
17 9 0.32
ACGTcount: A:0.15, C:0.23, G:0.06, T:0.56
Consensus pattern (15 bp):
CCAACTTTTTTTTTG
Found at i:58967 original size:34 final size:34
Alignment explanation
Indices: 58924--59118 Score: 259
Period size: 34 Copynumber: 5.7 Consensus size: 34
58914 AACATTCGGT
58924 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
*
58958 CCCACAACTCGGTGGCACTCTTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
58992 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
1 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
*
59026 CCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAG
1 CCCACAACTCCGTGGCACTC--TTTTTCC-TTCT-AAG
* * * *
59064 CCCACAACTCTGTGGCAC-CTTGTTCTTTTTAAG
1 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
* * *
59097 TCCACAACTTCGTGACA-TCTTT
1 CCCACAACTCCGTGGCACTCTTT
59119 CACCCTCTCT
Statistics
Matches: 145, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
33 19 0.13
34 90 0.62
35 5 0.03
36 7 0.05
37 4 0.03
38 20 0.14
ACGTcount: A:0.18, C:0.34, G:0.12, T:0.35
Consensus pattern (34 bp):
CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAG
Found at i:59130 original size:106 final size:103
Alignment explanation
Indices: 58924--59138 Score: 265
Period size: 105 Copynumber: 2.1 Consensus size: 103
58914 AACATTCGGT
*
58924 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCGGTGGCACTCTTTTTCCTTCT
1 CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCGGTGGCACTCTTGTTCCTTCT
* **
58989 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-AAG
66 AAGCCCACAACTCCGTGACACTCTTTACCCTTCTAAAG
* * *
59026 CCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAGCCCACAACTCTGTGGCAC-CTTGTTCT
1 CCCACAACTCCGTGGCACTC--TTTTTCC-TTCT-AAGCCCACAACTCGGTGGCACTCTTGTTCC
* * *
59090 TTTTAAGTCCACAACTTCGTGACA-TCTTTCACCCTCTCTAAAG
62 TTCTAAGCCCACAACTCCGTGACACTCTTT-ACCCT-TCTAAAG
59133 CCCACA
1 CCCACA
59139 CAAGTCGGTG
Statistics
Matches: 96, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
102 20 0.21
104 12 0.12
105 32 0.33
106 23 0.24
107 9 0.09
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.33
Consensus pattern (103 bp):
CCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCGGTGGCACTCTTGTTCCTTCT
AAGCCCACAACTCCGTGACACTCTTTACCCTTCTAAAG
Found at i:59162 original size:34 final size:31
Alignment explanation
Indices: 59120--59259 Score: 180
Period size: 34 Copynumber: 4.5 Consensus size: 31
59110 GACATCTTTC
59120 ACCCTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTCTC-AAAGCCCACACAAGTCGGTGGC-A
*
59153 ACCCTTCTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCC-TCTC-AAAGCCCACACAAGTCGGTGGCA
* *
59186 ACCCCCTCAAAGCCCACACAAGTTGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
59217 A-CC-C-CAAAGCCCACACAAGTCGGTGGCA
1 ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
*
59245 ACCC-CTCTAAGCCCA
1 ACCCTCTCAAAGCCCA
59260 ATATAGCTGG
Statistics
Matches: 100, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
28 24 0.24
29 4 0.04
30 10 0.10
31 24 0.24
32 3 0.03
33 9 0.09
34 26 0.26
ACGTcount: A:0.29, C:0.39, G:0.18, T:0.14
Consensus pattern (31 bp):
ACCCTCTCAAAGCCCACACAAGTCGGTGGCA
Found at i:59370 original size:49 final size:49
Alignment explanation
Indices: 59252--59819 Score: 737
Period size: 49 Copynumber: 11.7 Consensus size: 49
59242 GCAACCCCTC
* *
59252 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* *
59304 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
59353 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* * *
59405 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAGCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
59454 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
59503 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
59552 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
59601 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
59644 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
59693 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
59736 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC---CTTCATCTT
* *
59788 TAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCAC
59820 GTTGACATCC
Statistics
Matches: 455, Mismatches: 43, Indels: 36
0.85 0.08 0.07
Matches are distributed among these distances:
43 78 0.17
45 2 0.00
47 1 0.00
49 254 0.56
50 5 0.01
51 2 0.00
52 113 0.25
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:59553 original size:98 final size:98
Alignment explanation
Indices: 59252--59885 Score: 896
Period size: 98 Copynumber: 6.4 Consensus size: 98
59242 GCAACCCCTC
* * *
59252 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTA
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTA
59317 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
63 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
* *
59353 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTA
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTA
*
59418 GCTGGCCTTGACTCAGCACATTGGCACCTTCAGCTT
63 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
59454 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
59519 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
59552 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
59617 GGCCTTGACTCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
59644 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
*
59709 GGCCTTGAATCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * *
59736 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTTCATCTTTAAGTTCAATGTA
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CA-TCTTCATCTTTAAGTCCAATGTA
* * *
59801 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
63 GCTGGCCTTGACTCAGCACATTGGCA-CC----T-TCATCTT
* * * *
59843 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
59886 TATCACTTTT
Statistics
Matches: 501, Mismatches: 17, Indels: 27
0.92 0.03 0.05
Matches are distributed among these distances:
92 130 0.26
94 3 0.01
95 45 0.09
98 142 0.28
99 3 0.01
101 137 0.27
104 3 0.01
105 3 0.01
107 35 0.07
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (98 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCATCTT
Found at i:59669 original size:92 final size:92
Alignment explanation
Indices: 59549--59819 Score: 479
Period size: 92 Copynumber: 2.9 Consensus size: 92
59539 GCACCTTCAT
59549 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
59614 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
59641 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
59706 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
59733 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTTCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CA-TCTTCATCTTTAAGTCCAAT
59798 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
59820 GTTGACATCC
Statistics
Matches: 172, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
92 130 0.76
94 2 0.01
95 40 0.23
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:59862 original size:55 final size:55
Alignment explanation
Indices: 59733--60116 Score: 264
Period size: 67 Copynumber: 6.7 Consensus size: 55
59723 ACATTGGCAC
* *
59733 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--CATTTT-TCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
59785 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * *
59840 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
59904 CATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C---TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * **
59956 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * *
60011 CTTTAGGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT-G-A-C---ATC-C-TTT-T--TC-TC
60076 AT
54 AT
* *
60078 CTTTAAGTCCAAGATTGCTGGCCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
60117 GCACCTTCAT
Statistics
Matches: 256, Mismatches: 43, Indels: 52
0.73 0.12 0.15
Matches are distributed among these distances:
49 36 0.14
50 1 0.00
52 42 0.16
54 7 0.03
55 65 0.25
56 2 0.01
57 2 0.01
58 2 0.01
59 1 0.00
61 8 0.03
62 6 0.02
63 5 0.02
64 7 0.03
66 4 0.02
67 68 0.27
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:60023 original size:171 final size:171
Alignment explanation
Indices: 59733--60127 Score: 691
Period size: 171 Copynumber: 2.3 Consensus size: 171
59723 ACATTGGCAC
*
59733 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTTCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CA-TCTTCATCTTTAAGTTCAAT
59798 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCC
59863 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* *
59907 TTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
*
59972 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCGTTGGCCATG
66 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
*
60037 AATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAT
131 AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
* * *
60078 CTTTAAGTCCAAGATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
60128 ATCTCTAAAA
Statistics
Matches: 212, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
171 172 0.81
172 2 0.01
174 38 0.18
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (171 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCATG
AATCAACATATTGGCATCTTTATCACTTTTCTCATCATCAT
Found at i:60938 original size:20 final size:20
Alignment explanation
Indices: 60913--60978 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
60903 TTTCAATGAT
60913 TTGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATG
60933 TTGTATCGATAC----AA--
1 TTGTATCGATACATAAAATG
60947 -TGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATG
60966 TTGTATCGATACA
1 TTGTATCGATACA
60979 ATGTATCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
16 2 0.05
17 2 0.05
20 24 0.62
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATAAAATG
Found at i:60951 original size:33 final size:33
Alignment explanation
Indices: 60914--61013 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
60904 TTCAATGATT
60914 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
60947 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
60980 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
61013 T
1 T
61014 TTAAGCTACT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:60952 original size:13 final size:13
Alignment explanation
Indices: 60934--60991 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 13
60924 CATAAAATGT
60934 TGTATCGATACAA
1 TGTATCGATACAA
60947 TGTATCGATACATAAAA
1 TGTATCGATAC----AA
60964 TGTTGTATCGATACAA
1 ---TGTATCGATACAA
60980 TGTATCGATACA
1 TGTATCGATACA
60992 TATTTTTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 23 0.61
16 2 0.05
17 2 0.05
20 11 0.29
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:61186 original size:44 final size:44
Alignment explanation
Indices: 61114--61201 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
61104 AGGCAAATTT
*
61114 GCCCAGATGTATCGATACATTATAAAATGTATCGATACATGCAG
1 GCCCAGATGTATCGATACACTATAAAATGTATCGATACATGCAG
*
61158 GCCCAGATGTATCGATACACTATTAAATGTATCGATACATGCAG
1 GCCCAGATGTATCGATACACTATAAAATGTATCGATACATGCAG
61202 TAACTTTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (44 bp):
GCCCAGATGTATCGATACACTATAAAATGTATCGATACATGCAG
Found at i:66217 original size:68 final size:68
Alignment explanation
Indices: 66134--66288 Score: 274
Period size: 68 Copynumber: 2.3 Consensus size: 68
66124 TATGTCCTTG
* *
66134 TTTAGTTAGGACTCTATAGGTTCTTGTGTTTAGGATAGATTTTTCCTTATCGGATAAGAGAGTTC
1 TTTAGTTAGGGCTCTATAGGTTCTTATGTTTAGGATAGATTTTTCCTTATCGGATAAGAGAGTTC
66199 TTA
66 TTA
66202 TTTAGTTAGGGCTCTATAGGTTCTTATGTTTAGGATAGATTTTTCCTTATCGGATAAGAGAGTTC
1 TTTAGTTAGGGCTCTATAGGTTCTTATGTTTAGGATAGATTTTTCCTTATCGGATAAGAGAGTTC
*
66267 TTG
66 TTA
*
66270 TTTAGTTAGGGCTTTATAG
1 TTTAGTTAGGGCTCTATAG
66289 ATTTTAGGCC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 83 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.45
Consensus pattern (68 bp):
TTTAGTTAGGGCTCTATAGGTTCTTATGTTTAGGATAGATTTTTCCTTATCGGATAAGAGAGTTC
TTA
Found at i:68457 original size:103 final size:103
Alignment explanation
Indices: 68330--68552 Score: 281
Period size: 103 Copynumber: 2.2 Consensus size: 103
68320 ATGGGGTTGC
* * * *
68330 AGTAT-CCTCGTGGATAACATATAATTTTAACAAAAGAAGAGTTTAAATCTTA-ATAAATTTTTA
1 AGTATCCCT-GTGGATAACAAATAATTTTAACAAAAGAAGAGTTCAAAAC-TAGATAAATTTTGA
* *
68393 AGAGTAGGGTTAGAGTAT-CCCTTCAAAAAGTCAAGGTTAG
64 AGAGCAAGGTTAGAGTATCCCCTT-AAAAAGTCAAGGTTAG
*
68433 ATTATCCCTGTGGATAACAAATAATTTTAACAAAAGAAGAGTTCAAAACTAGATAAATTTTGAAG
1 AGTATCCCTGTGGATAACAAATAATTTTAACAAAAGAAGAGTTCAAAACTAGATAAATTTTGAAG
* * ** *
68498 AGCAAGGTTGGAGTATCCCCTTAAAAGGTTGAGGTTGG
66 AGCAAGGTTAGAGTATCCCCTTAAAAAGTCAAGGTTAG
*
68536 AGTATCCCTGTGAATAA
1 AGTATCCCTGTGGATAA
68553 AATTTTGATA
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
102 2 0.02
103 93 0.90
104 8 0.08
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (103 bp):
AGTATCCCTGTGGATAACAAATAATTTTAACAAAAGAAGAGTTCAAAACTAGATAAATTTTGAAG
AGCAAGGTTAGAGTATCCCCTTAAAAAGTCAAGGTTAG
Found at i:70698 original size:17 final size:17
Alignment explanation
Indices: 70661--70708 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
70651 TGATCTTACC
70661 TTTGTTCTTTTCTC-TTTT
1 TTTGTT-TTTT-TCATTTT
*
70679 TTTTTTATTTTTCATTTT
1 TTTGTT-TTTTTCATTTT
70697 TTTGTTTTTTTC
1 TTTGTTTTTTTC
70709 TTAGTGCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.04, C:0.10, G:0.04, T:0.81
Consensus pattern (17 bp):
TTTGTTTTTTTCATTTT
Found at i:74863 original size:21 final size:21
Alignment explanation
Indices: 74838--74882 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
74828 GGGGACGAAT
*
74838 ATTACTCAAATGTATCGATCC
1 ATTACTCAAATGTATCGATAC
74859 ATTACTCAAATGTATCGATAC
1 ATTACTCAAATGTATCGATAC
74880 ATT
1 ATT
74883 GTATCGATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (21 bp):
ATTACTCAAATGTATCGATAC
Found at i:74887 original size:13 final size:13
Alignment explanation
Indices: 74869--74893 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74859 ATTACTCAAA
74869 TGTATCGATACAT
1 TGTATCGATACAT
74882 TGTATCGATACA
1 TGTATCGATACA
74894 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:82109 original size:12 final size:11
Alignment explanation
Indices: 82087--82145 Score: 55
Period size: 12 Copynumber: 5.0 Consensus size: 11
82077 TGTTCTTTTC
*
82087 CAAAAAAGAAA
1 CAAAAAAAAAA
*
82098 CAAAACAAGAAA
1 CAAAA-AAAAAA
*
82110 GAAAAAAAAAA
1 CAAAAAAAAAA
82121 CAAAAAAAAAAA
1 C-AAAAAAAAAA
82133 CACAAACAAAAAA
1 CA-AAA-AAAAAA
82146 AAAGGGAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
11 11 0.27
12 24 0.59
13 6 0.15
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:82128 original size:14 final size:15
Alignment explanation
Indices: 82111--82148 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
82101 AACAAGAAAG
82111 AAAAAAAAAACAAA-
1 AAAAAAAAAACAAAC
*
82125 AAAAAAAACACAAAC
1 AAAAAAAAAACAAAC
82140 AAAAAAAAA
1 AAAAAAAAA
82149 GGGAAAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAACAAAC
Found at i:82157 original size:18 final size:18
Alignment explanation
Indices: 82088--82148 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
82078 GTTCTTTTCC
*
82088 AAAAAAGAAAC-AAAACA
1 AAAAAAAAAACAAAAACA
*
82105 AGAAAGAAAAA-AAAAACA
1 A-AAAAAAAAACAAAAACA
*
82123 AAAAAAAAAACACAAACA
1 AAAAAAAAAACAAAAACA
82141 AAAAAAAA
1 AAAAAAAA
82149 GGGAAAAACC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 9 0.24
18 28 0.76
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAACAAAAACA
Found at i:83182 original size:31 final size:32
Alignment explanation
Indices: 83094--83851 Score: 211
Period size: 31 Copynumber: 23.9 Consensus size: 32
83084 TTCAAATACC
* * **
83094 TTTTCTTTAAAGTCCACGACTCATTGGCA-TT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * *
83125 TTGTC-TCAAAGTCCACGACTCAGTGGCA-TT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* **
83155 TTTTCTTCAAAGCCCACAACTCCGTGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * **
83187 TCTT-TTCAAAGTCCACAATTCCGTGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * **
83218 TCTT-TTCAAAGCCCACAACTCTATGGCATCTTTT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCA---TTT
* **
83252 TTCCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTT
1 TT--TTC--TTCAAAGTCCACAACTCCGTGGCA---TTT
* **
83291 TTCCTTCTTTTCAAAGTCCACAATTCCGTGGCACCT
1 TT--TTC--TTCAAAGTCCACAACTCCGTGGCATTT
* ***
83327 TCTT-TTCAAAGTCCACAACTCCGTGGCGCCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * **
83358 TCTT-TTCAAAGTCCACAATTCCGTGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * *
83389 TCTT-TTCAAAGCCCACAACTCTGTGGCATCTTTT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCA---TTT
* *
83423 TTCCTTCTTTTCAAAGCCCACAACTCTGTGGCATCTT
1 TT--TTC--TTCAAAGTCCACAACTCCGTGGCAT-TT
* *
83460 TGTCCTT-TTTAAAGCCCACAACTCCGTGGCACTCTT
1 T-T--TTCTTCAAAGTCCACAACTCCGTGGCA-T-TT
* * * *
83496 TTTCCTTCTAAGTCCACAACTCTGTGGCA--C
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
*** *
83526 CCGT-TT--AAGCCCACAACT---T-G---TT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
** * **
83548 CCTT-TT--AAGTCCACGACTCCGTGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * * **
83577 TCTT-TTCAAAGTCCACGACTCCATGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* **
83608 TCTT-TTCAAAGTCCACAACTCCGTGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * *
83639 TCTT-TTCAAAGTCCACAACTCGGTGGCACCTT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCA-TTT
* * ** * * **
83671 GTTCCTTTTAAGTCCACGACTCCGTGCCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* **
83703 TCTT-TTCAAAGTCCACAACTCCGTGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * * *
83734 TCTT-TTCAAAGTCCACAATTTCGTGGCA--C
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
** * * **
83763 CCTT-TT--AAGTCCACGACTCCATGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
* * **
83792 TCTT-TTCAAAGTCCACAACTCTGTGGCACCT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
*
83823 TCTT-TTCAAAGTCCACAACTCCGTGGCAT
1 TTTTCTTCAAAGTCCACAACTCCGTGGCAT
83852 CTTTCTCCTT
Statistics
Matches: 599, Mismatches: 90, Indels: 76
0.78 0.12 0.10
Matches are distributed among these distances:
22 15 0.03
23 1 0.00
24 1 0.00
25 1 0.00
26 1 0.00
27 27 0.05
29 18 0.03
30 27 0.05
31 326 0.54
32 10 0.02
33 20 0.03
34 26 0.04
35 23 0.04
36 12 0.02
37 3 0.01
38 5 0.01
39 83 0.14
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (32 bp):
TTTTCTTCAAAGTCCACAACTCCGTGGCATTT
Found at i:83213 original size:62 final size:62
Alignment explanation
Indices: 83130--83857 Score: 596
Period size: 62 Copynumber: 11.5 Consensus size: 62
83120 GCATTTTGTC
* * * *
83130 TCAAAGTCCACGACTCAGTGGCA-TTTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACAACTCCGTGGCACTTTCTT-TTCAAAGTCCACAACTCCGTGGCACCTTCTTT
* * * **
83192 TCAAAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCT
1 TCAAAGTCCACAACTCCGTGGCACTTTCTTTTCAAAGTCCACAACTCCGTGGCA--------CCT
83257 TCTTT
58 TCTTT
* ** *
83262 TCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTCTTTTCAAAGTCCACAATTCCGTGGCACCT
1 TCAAAGTCCACAACTCCGTGGCA-C-----T--TTCTTTTCAAAGTCCACAACTCCGTGGCACCT
83327 TCTTT
58 TCTTT
* * *
83332 TCAAAGTCCACAACTCCGTGGCGCCTTCTTTTCAAAGTCCACAATTCCGTGGCACCTTCTTT
1 TCAAAGTCCACAACTCCGTGGCACTTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTT
* * * *
83394 TCAAAGCCCACAACTCTGTGGCATCTTTTTTCCTTCTTTTCAAAGCCCACAACTCTGTGGCATCT
1 TCAAAGTCCACAACTCCGTGGCA-C-----T--TTCTTTTCAAAGTCCACAACTCCGTGGCA-C-
*
83459 TTGTCCTTT
56 CT-T-CTTT
* * * * * *
83468 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACC--CGTT
1 TCAAAGTCCACAACTCCGTGGCACT-TTCTT--TTCAAAGTCCACAACTCCGTGGCACCTTCTTT
* * *
83531 T--AAGCCCACAACT---T-G---TTCCTTTT--AAGTCCACGACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACAACTCCGTGGCACTTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTT
* * *
83582 TCAAAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTT
1 TCAAAGTCCACAACTCCGTGGCACTTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTT
* * *
83644 TCAAAGTCCACAACTCGGTGGCACCTTGTTCCTTTT--AAGTCCACGACTCCGTGCCACCTTCTT
1 TCAAAGTCCACAACTCCGTGGCA-C-T-TT-CTTTTCAAAGTCCACAACTCCGTGGCACCTTCTT
83707 T
62 T
* * *
83708 TCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAATTTCGTGGCACC--CTTT
1 TCAAAGTCCACAACTCCGTGGCACTTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTT
* * * *
83768 T--AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTCTGTGGCACCTTCTTT
1 TCAAAGTCCACAACTCCGTGGCACTTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTT
83828 TCAAAGTCCACAACTCCGTGGCATCTTTCT
1 TCAAAGTCCACAACTCCGTGGCA-CTTTCT
83858 CCTTCCCAAA
Statistics
Matches: 545, Mismatches: 66, Indels: 109
0.76 0.09 0.15
Matches are distributed among these distances:
49 20 0.04
51 6 0.01
53 13 0.02
54 1 0.00
56 1 0.00
57 2 0.00
58 49 0.09
60 21 0.04
61 14 0.03
62 182 0.33
63 16 0.03
64 48 0.09
65 2 0.00
66 5 0.01
67 5 0.01
68 2 0.00
69 23 0.04
70 80 0.15
71 2 0.00
72 1 0.00
73 2 0.00
74 25 0.05
78 25 0.05
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (62 bp):
TCAAAGTCCACAACTCCGTGGCACTTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTT
Found at i:83269 original size:39 final size:37
Alignment explanation
Indices: 83160--83504 Score: 243
Period size: 31 Copynumber: 10.0 Consensus size: 37
83150 GCATTTTTTC
83160 TTCAAAGCCCACAACTCCGTGGCA------CCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACTTTTTCCTTCTT
* *
83191 TTCAAAGTCCACAATTCCGTGGCA------CCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACTTTTTCCTTCTT
**
83222 TTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCA-C-TTTTTCCTTCTT
**
83261 TTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCA-C-TTTTTCCTTCTT
* *
83300 TTCAAAGTCCACAATTCCGTGGCA------CCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACTTTTTCCTTCTT
* *
83331 TTCAAAGTCCACAACTCCGTGG--C----GCCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACTTTTTCCTTCTT
* *
83362 TTCAAAGTCCACAATTCCGTGGCA------CCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACTTTTTCCTTCTT
*
83393 TTCAAAGCCCACAACTCTGTGGCATCTTTTTTCCTTCTT
1 TTCAAAGCCCACAACTCCGTGGCA-C-TTTTTCCTTCTT
* *
83432 TTCAAAGCCCACAACTCTGTGGCATCTTTGTCC-T-TT
1 TTCAAAGCCCACAACTCCGTGGCA-CTTTTTCCTTCTT
83468 TT-AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 TTCAAAGCCCACAACTCCGTGGCA--CTTTTTCCTTCT
83505 AAGTCCACAA
Statistics
Matches: 273, Mismatches: 18, Indels: 39
0.83 0.05 0.12
Matches are distributed among these distances:
31 133 0.49
35 20 0.07
36 12 0.04
37 2 0.01
38 7 0.03
39 99 0.36
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.35
Consensus pattern (37 bp):
TTCAAAGCCCACAACTCCGTGGCACTTTTTCCTTCTT
Found at i:83418 original size:171 final size:169
Alignment explanation
Indices: 83132--83850 Score: 595
Period size: 171 Copynumber: 4.5 Consensus size: 169
83122 ATTTTGTCTC
* * * * *
83132 AAAGTCCACGACTCAGTGGCA-T-TTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTCTTTTCA
1 AAAGCCCACAACTCCGTGGCACTCTTCTTCTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTCA
83195 AAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTCT
66 AAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTCT
*
83260 TTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTCTTTT
131 TTTCAAAGCCCACAACTCTATGGCATC-TTTGTCC-T-TTTT
* * *
83302 CAAAGTCCACAATTCCGTGGCAC-CTTCTT-TTCAAAGTCCACAACTCCGTGGCGCCTTCTTTTC
1 -AAAGCCCACAACTCCGTGGCACTCTTCTTCTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTC
*
83365 AAAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCATCTTTTTTCCTTC
65 AAAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTC
*
83430 TTTTCAAAGCCCACAACTCTGTGGCATCTTTGTCCTTTTT
130 TTTTCAAAGCCCACAACTCTATGGCATCTTTGTCCTTTTT
* * * *
83470 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACC--CGTTT-
1 AAAGCCCACAACTCCGTGGCACTCTTCTT-CTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTC
* * * * **
83532 -AAGCCCACAACTT--GT------TCCTTTT--AAGTCCACGACTCCGTGGCA--------CCTT
65 AAAGTCCACAA-TTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTT
* * * * *
83578 CTTTTCAAAGTCCACGACTCCATGGCA-C-CT-T-CTTTTC
129 CTTTTCAAAGCCCACAACTCTATGGCATCTTTGTCCTTTTT
* * *
83615 AAAGTCCACAACTCCGTGGCAC-CTTCTT-TTCAAAGTCCACAACTCGGTGGCACCTTGTTCCTT
1 AAAGCCCACAACTCCGTGGCACTCTTCTTCTTCAAAGTCCACAACTCCGTGGCACCTTCTT--TT
** * * * * **
83678 TTAAGTCCACGACTCCGTGCCACCTTCTTTTCAAAGTCCACAACTCCGTGGCA--------CCTT
64 CAAAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTT
* * *
83735 CTTTTCAAAGTCCACAA-TTTCGTGGCA-C-----CC-TTTT
129 CTTTTCAAAGCCCACAACTCT-ATGGCATCTTTGTCCTTTTT
* * * *
83769 -AAGTCCACGACTCCATGGCAC-CTTCTT-TTCAAAGTCCACAACTCTGTGGCACCTTCTTTTCA
1 AAAGCCCACAACTCCGTGGCACTCTTCTTCTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTCA
*
83831 AAGTCCACAACTCCGTGGCA
66 AAGTCCACAATTCCGTGGCA
83851 TCTTTCTCCT
Statistics
Matches: 473, Mismatches: 51, Indels: 68
0.80 0.09 0.11
Matches are distributed among these distances:
142 24 0.05
144 6 0.01
145 26 0.05
146 3 0.01
147 2 0.00
148 9 0.02
149 29 0.06
151 20 0.04
153 54 0.11
154 3 0.01
155 7 0.01
156 1 0.00
157 62 0.13
159 6 0.01
165 2 0.00
166 9 0.02
167 22 0.05
168 13 0.03
169 1 0.00
170 29 0.06
171 141 0.30
172 4 0.01
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.32
Consensus pattern (169 bp):
AAAGCCCACAACTCCGTGGCACTCTTCTTCTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTCA
AAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTATGGCATCTTTTTTCCTTCT
TTTCAAAGCCCACAACTCTATGGCATCTTTGTCCTTTTT
Found at i:83498 original size:74 final size:70
Alignment explanation
Indices: 83355--83504 Score: 194
Period size: 74 Copynumber: 2.1 Consensus size: 70
83345 CTCCGTGGCG
* * *
83355 CCTTCTTTTCAAAGTCCACAATTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCATCT
1 CCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCATCT
83420 TTTTT
66 TTTTT
* * *
83425 CCTTCTTTTCAAAGCCCACAACTCTGTGGCATCTTTGTCCTTTTTAAAGCCCACAACTCCGTGGC
1 CCTTCTTTTCAAAGCCCACAACTCCGTGGCA-C-CT-T-CTTTTCAAAGCCCACAACTCCGTGGC
83490 A-CTCTTTTT
62 ATCT-TTTTT
83499 CCTTCT
1 CCTTCT
83505 AAGTCCACAA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
70 28 0.41
71 1 0.01
72 1 0.01
73 3 0.04
74 36 0.52
ACGTcount: A:0.19, C:0.33, G:0.11, T:0.37
Consensus pattern (70 bp):
CCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCATCT
TTTTT
Found at i:83825 original size:89 final size:88
Alignment explanation
Indices: 83567--83850 Score: 406
Period size: 89 Copynumber: 3.1 Consensus size: 88
83557 TCCACGACTC
83567 CGTGGCACCTTCTTTTCAAAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTCCGT
1 CGTGGCACC--CTTTT--AAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTCCGT
*
83632 GGCACCTTCTTTTCAAAGTCCACAACT
62 GGCACCTTCTTTTCAAAGTCCACAATT
* *
83659 CGGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGCCACCTTCTTTTCAAAGTCCACAACTC
1 C-GTGGCA-C-----CCTTTTAAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTC
83724 CGTGGCACCTTCTTTTCAAAGTCCACAATTT
59 CGTGGCACCTTCTTTTCAAAGTCCACAA-TT
*
83755 CGTGGCACCCTTTTAAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTCTGTGGCA
1 CGTGGCACCCTTTTAAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCA
*
83820 CCTTCTTTTCAAAGTCCACAACTC
66 CCTTCTTTTCAAAGTCCACAA-TT
83844 CGTGGCA
1 CGTGGCA
83851 TCTTTCTCCT
Statistics
Matches: 176, Mismatches: 8, Indels: 19
0.87 0.04 0.09
Matches are distributed among these distances:
89 83 0.47
92 1 0.01
93 6 0.03
94 2 0.01
95 76 0.43
96 2 0.01
97 5 0.03
99 1 0.01
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.30
Consensus pattern (88 bp):
CGTGGCACCCTTTTAAGTCCACGACTCCATGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCA
CCTTCTTTTCAAAGTCCACAATT
Found at i:83900 original size:32 final size:33
Alignment explanation
Indices: 83865--84018 Score: 226
Period size: 32 Copynumber: 4.7 Consensus size: 33
83855 TCTCCTTCCC
83865 AAAGCCCACACAAGTCGGTGGCAACCCTTCTC-
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
83897 AAAGCCCACACAAGTCGGTGGCAACCC-TCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
*
83929 AAAGCCCACACAAGTTGGTGGCAATCCCCTT-TCT
1 AAAGCCCACACAAGTCGGTGGCAA--CCCTTCTCT
*
83963 AAAGCCCACACAAGTCGGTGGCAA-CCTTCTTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-TCT
*
83996 AAAGCCCACACAAGTTGGTGGCA
1 AAAGCCCACACAAGTCGGTGGCA
84019 TCTTCCTTTA
Statistics
Matches: 112, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
31 8 0.07
32 50 0.45
33 24 0.21
34 29 0.26
35 1 0.01
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (33 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
Found at i:83980 original size:66 final size:65
Alignment explanation
Indices: 83865--84018 Score: 240
Period size: 66 Copynumber: 2.4 Consensus size: 65
83855 TCTCCTTCCC
* *
83865 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTC-TCT
1 AAAGCCCACACAAGTTGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTTCA
*
83929 AAAGCCCACACAAGTTGGTGGCAATCCCCTT-TCTAAAGCCCACACAAGTCGGTGGCAACCTTCT
1 AAAGCCCACACAAGTTGGTGGCAA--CCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTCT
83993 TCA
63 TCA
83996 AAAGCCCACACAAGTTGGTGGCA
1 AAAGCCCACACAAGTTGGTGGCA
84019 TCTTCCTTTA
Statistics
Matches: 83, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
64 23 0.28
65 2 0.02
66 33 0.40
67 25 0.30
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (65 bp):
AAAGCCCACACAAGTTGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTTCA
Found at i:84079 original size:43 final size:43
Alignment explanation
Indices: 84027--84307 Score: 202
Period size: 52 Copynumber: 6.0 Consensus size: 43
84017 CATCTTCCTT
*
84027 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTC
* * *
84070 CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--C-TC
* * * * *
84117 TTTAAGTCTAATGTAGCCGACCTTGAATCAGCACATTGGCACCTT
1 --TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTC
* * * *
84162 TAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC-AC-----C-TC
* *
84212 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTGTCATC
1 --TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-----C-TC
*
84264 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCT
1 --TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCT
84308 TCATCTTTAA
Statistics
Matches: 197, Mismatches: 25, Indels: 30
0.78 0.10 0.12
Matches are distributed among these distances:
43 66 0.34
44 2 0.01
45 2 0.01
46 3 0.02
47 2 0.01
48 1 0.01
49 33 0.17
50 1 0.01
51 1 0.01
52 86 0.44
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (43 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTC
Found at i:84181 original size:92 final size:92
Alignment explanation
Indices: 84014--84317 Score: 360
Period size: 92 Copynumber: 3.2 Consensus size: 92
84004 CACAAGTTGG
**
84014 TGGCATCTTC--CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCCAAGTCC
1 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
84077 AATATCGCTGGCCTTGAATCAGCATAT
66 AATATCGCTGGCCTTGAATCAGCATAT
* * *
84104 TGGCATCTTCATCTTTAAGTCTAATGTAGCCGACCTTGAATCAGCACATTGGCACCTTTAAGTCC
1 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
* *
84169 AATATTGTTGGCCTTGAATCAGCATAT
66 AATATCGCTGGCCTTGAATCAGCATAT
* * * * *
84196 TGGCGCCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTGTC
1 T-G-GCATCT-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-------C
*
84261 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
56 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
*
84300 TGGCACCTTCATCTTTAA
1 TGGCATCTTCATCTTTAA
84318 CATTCCTAAG
Statistics
Matches: 179, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
90 10 0.06
92 74 0.41
93 1 0.01
94 4 0.02
95 40 0.22
101 10 0.06
102 4 0.02
103 1 0.01
104 35 0.20
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (92 bp):
TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
AATATCGCTGGCCTTGAATCAGCATAT
Found at i:84237 original size:52 final size:52
Alignment explanation
Indices: 84159--84308 Score: 255
Period size: 52 Copynumber: 2.9 Consensus size: 52
84149 ACATTGGCAC
* * *
84159 CTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
*
84211 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
*
84263 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
84309 CATCTTTAAC
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 92 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
Found at i:90108 original size:146 final size:146
Alignment explanation
Indices: 89839--90293 Score: 357
Period size: 146 Copynumber: 3.0 Consensus size: 146
89829 TCAATATCAT
* * * * * *
89839 GCATC-TAATAAGGAGAATGTTTTTTTGTTGCCTAATCATGAACAAAATGGAGATTCTTTCGAGA
1 GCATCATAATAAGGAGAATATGTTTATGGTGCCCAATCATGAACAAAATGGAGATTATTTCGAGA
* * * * * * * *
89903 ATCTATGTTTGTTTTATTTGAGGGATGAACTTCAATTCTAAGCAAAATGGTAGAGAGAAAAACTT
66 ATCCAAGTTTGTCTTATTTGAAGGATGAACTTCAATTCGAAGAAAAATAGTAGAAAGAAAAACTT
**
89968 TTCTTATGAAACCAAA
131 TTCTTACAAAACCAAA
* *
89984 GCATCATAATAAGGAGAATATGTTTATGGTGCCCAGTCATGAA-AAGGATGGAGATTATTATC-A
1 GCATCATAATAAGGAGAATATGTTTATGGTGCCCAATCATGAACAA-AATGGAGATTATT-TCGA
** *
90047 GAATCCAAGTTTGTCTTATTTGAAGGATGAACTTTGATTCGAAGAAAAATAG-AGAAAAGAAAAG
64 GAATCCAAGTTTGTCTTATTTGAAGGATGAACTTCAATTCGAAGAAAAATAGTAG-AAAGAAAAA
* *
90111 TTTTTCTTGCAAAACCAAA
128 CTTTTCTTACAAAACCAAA
** * **
90130 GCATCAATGTCATGTATACCAATGTAGAGAGCATGTTTATGGTGCCCAATCATGAAGAAAATCAA
1 GCATC-A--T-A---AT---AA-G--GAGAATATGTTTATGGTGCCCAATCATGAACAAAATGGA
* * * * * * *
90195 GATTATTTCTAGAATCCATGTTTATC-TCTTTGAAGGATGAACTTTGACATT--AAGGAAAATGG
53 GATTATTTCGAGAATCCAAGTTTGTCTTATTTGAAGGATGAAC-TTCA-ATTCGAAGAAAAATAG
* * *
90257 TAAAAAGAAAAACTTTTCTTGCAAAACTAAA
116 TAGAAAGAAAAACTTTTCTTACAAAACCAAA
90288 GCATCA
1 GCATCA
90294 ATATCATGTA
Statistics
Matches: 248, Mismatches: 40, Indels: 32
0.77 0.12 0.10
Matches are distributed among these distances:
145 9 0.04
146 113 0.46
147 3 0.01
149 1 0.00
150 1 0.00
153 2 0.01
156 2 0.01
157 2 0.01
158 56 0.23
159 54 0.22
160 5 0.02
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (146 bp):
GCATCATAATAAGGAGAATATGTTTATGGTGCCCAATCATGAACAAAATGGAGATTATTTCGAGA
ATCCAAGTTTGTCTTATTTGAAGGATGAACTTCAATTCGAAGAAAAATAGTAGAAAGAAAAACTT
TTCTTACAAAACCAAA
Found at i:90292 original size:158 final size:158
Alignment explanation
Indices: 90003--90304 Score: 398
Period size: 158 Copynumber: 1.9 Consensus size: 158
89993 TAAGGAGAAT
* * ** *
90003 ATGTTTATGGTGCCCAGTCATGAAAAGGATGGAGATTATTATCAGAATCCAAGTTTGTCTTATTT
1 ATGTTTATGGTGCCCAATCATGAAAAGAATCAAGATTATTATCAGAATCCAAGTTTATCTTATTT
**
90068 GAAGGATGAACTTTGATTCGAAGAAAAATAGAGAAAAGAAAAGTTTTTCTTGCAAAACCAAAGCA
66 GAAGGATGAACTTTGATTC-AAGAAAAATAGAGAAAAGAAAAACTTTTCTTGCAAAACCAAAGCA
*
90133 TCAATGTCATGTATACCAATGTAGAGAGC
130 TCAATATCATGTATACCAATGTAGAGAGC
* *
90162 ATGTTTATGGTGCCCAATCATGAAGAA-AATCAAGATTATT-TCTAGAATCCATGTTTATC-TCT
1 ATGTTTATGGTGCCCAATCATGAA-AAGAATCAAGATTATTATC-AGAATCCAAGTTTATCTTAT
* * *
90224 TTGAAGGATGAACTTTGACATT-AAGGAAAATGGTA-AAAAGAAAAACTTTTCTTGCAAAACTAA
64 TTGAAGGATGAACTTTG--ATTCAAGAAAAATAG-AGAAAAGAAAAACTTTTCTTGCAAAACCAA
90287 AGCATCAATATCATGTAT
126 AGCATCAATATCATGTAT
90305 CCACAAAAGA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
158 72 0.58
159 48 0.38
160 5 0.04
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (158 bp):
ATGTTTATGGTGCCCAATCATGAAAAGAATCAAGATTATTATCAGAATCCAAGTTTATCTTATTT
GAAGGATGAACTTTGATTCAAGAAAAATAGAGAAAAGAAAAACTTTTCTTGCAAAACCAAAGCAT
CAATATCATGTATACCAATGTAGAGAGC
Found at i:93858 original size:79 final size:78
Alignment explanation
Indices: 93706--94235 Score: 507
Period size: 79 Copynumber: 6.7 Consensus size: 78
93696 AAAGAAACAA
** * * * *
93706 GGTTGGAGTATCCCCTC-TGAAT-ACGGGATTGGAGTACCCCTGATGATGAAAATTTTAATATTT
1 GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGA-GATGAAAAATTTAACATTT
* *
93769 CAAAAATAAAAATGG
65 -TAAAATAAAAATAG
*
93784 GGTTGGAGTATCCCCTCAAAAATAGCGGGGTTGGAGTATCCCTGAGATGAAAAATTTAACATTTT
1 GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGAGATGAAAAATTTAACATTTT
93849 AGAAATAAAAA-AGG
66 A-AAATAAAAATA-G
* * * * * * *
93863 GGTTGGAGTAACCCCTTAGAAATAATGCGGTTGAAGTATCCCCGAGATGAAAAATTTAATGC-TT
1 GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGAGATGAAAAATTTAA--CATT
* *
93927 TGAAAATAAAAAAAAAG
64 TTAAAAT--AAAAATAG
* * * * * *
93944 GGTTAGAGTATCCCTTCAAAAATAACGGAGTTGGAGTACCCCTGAGATGAAAATTTTAATATTTC
1 GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGAGATGAAAAATTTAACATTT-
94009 TAAAATAAAAATAG
65 TAAAATAAAAATAG
** * * * * *
94023 GGTTGGAGTATCCCCTTGAAAATAATGGGGTTAGAGTATCCCCGAGATGAAAATTTTAATATTTT
1 GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGAGATGAAAAATTTAACATTTT
94088 GAAAATAAAAATAG
66 -AAAATAAAAATAG
* * * * * **
94102 GGTTGGAGCATCCCTTCAAAAATAA-TGGGTTGGAGTACCCCTAAGATG-AAAATTTTGCTATTT
1 GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGAGATGAAAAATTTAAC-ATTT
*
94165 CAAAAATAAAAATAG
65 -TAAAATAAAAATAG
* * * *
94180 GGTTGGAGTATCCCCTCAGAAATAATGGGGTTCGAGTATCCCCT-TGATGAAAAATT
1 GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTAT-CCCTGAGATGAAAAATT
94236 CAATATTGTA
Statistics
Matches: 372, Mismatches: 63, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
77 6 0.02
78 76 0.20
79 195 0.52
80 35 0.09
81 59 0.16
82 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (78 bp):
GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGAGATGAAAAATTTAACATTTT
AAAATAAAAATAG
Found at i:93979 original size:160 final size:156
Alignment explanation
Indices: 93706--94240 Score: 595
Period size: 160 Copynumber: 3.4 Consensus size: 156
93696 AAAGAAACAA
* * * *
93706 GGTTGGAGTATCCCCTCT-G-AAT-ACGGGATTGGAGTA-CCCCTGATGATGAAAATTTTAATA-
1 GGTTGGAGTATCCCCT-TAGAAATAATGGGGTTGAAGTATCCCC-GA-GATGAAAAATTTAATAC
* ** * * *
93766 TTTCAAAAATAAAAATGGGGTTGGAGTATCCCCTCAAAAATAGCGGGGTTGGAGTATCCCTGAGA
63 TTT-GAAAATAAAAAAAGGGTTGGAGTATCCCTTCAAAAATAAC-GGGTTGGAGTACCCCTGAGA
93831 TGAAAAATTTAACATTTTAGAAATAAAAA-AGG
126 TGAAAAATTTAACATTTTA-AAATAAAAATA-G
* * *
93863 GGTTGGAGTAACCCCTTAGAAATAATGCGGTTGAAGTATCCCCGAGATGAAAAATTTAATGCTTT
1 GGTTGGAGTATCCCCTTAGAAATAATGGGGTTGAAGTATCCCCGAGATGAAAAATTTAATACTTT
*
93928 GAAAATAAAAAAAAAGGGTTAGAGTATCCCTTCAAAAATAACGGAGTTGGAGTACCCCTGAGATG
66 GAAAAT--AAAAAAAGGGTTGGAGTATCCCTTCAAAAATAACGG-GTTGGAGTACCCCTGAGATG
* *
93993 AAAATTTTAATATTTCTAAAATAAAAATAG
128 AAAAATTTAACATTT-TAAAATAAAAATAG
* *
94023 GGTTGGAGTATCCCCTT-GAAAATAATGGGGTT-AGAGTATCCCCGAGATGAAAATTTTAATATT
1 GGTTGGAGTATCCCCTTAG-AAATAATGGGGTTGA-AGTATCCCCGAGATGAAAAATTTAATACT
* * * *
94086 TTGAAAATAAAAATAGGGTTGGAGCATCCCTTCAAAAATAATGGGTTGGAGTACCCCTAAGATG-
64 TTGAAAATAAAAAAAGGGTTGGAGTATCCCTTCAAAAATAACGGGTTGGAGTACCCCTGAGATGA
** *
94150 AAAATTTTGCTATTTCAAAAATAAAAATAG
129 AAAATTTAAC-ATTT-TAAAATAAAAATAG
* ** *
94180 GGTTGGAGTATCCCCTCAGAAATAATGGGGTTCG-AGTATCCCCTTGATGAAAAATTCAATA
1 GGTTGGAGTATCCCCTTAGAAATAATGGGGTT-GAAGTATCCCCGAGATGAAAAATTTAATA
94241 TTGTAGAAGT
Statistics
Matches: 326, Mismatches: 36, Indels: 32
0.83 0.09 0.08
Matches are distributed among these distances:
156 7 0.02
157 105 0.32
158 55 0.17
159 19 0.06
160 137 0.42
161 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (156 bp):
GGTTGGAGTATCCCCTTAGAAATAATGGGGTTGAAGTATCCCCGAGATGAAAAATTTAATACTTT
GAAAATAAAAAAAGGGTTGGAGTATCCCTTCAAAAATAACGGGTTGGAGTACCCCTGAGATGAAA
AATTTAACATTTTAAAATAAAAATAG
Found at i:94143 original size:27 final size:25
Alignment explanation
Indices: 94094--94143 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
94084 TTTTGAAAAT
*
94094 AAAAATAGGGTTGGAGCATCCCTTC
1 AAAAATAGGGTTGGAGCACCCCTTC
*
94119 AAAAATAATGGGTTGGAGTACCCCT
1 AAAAAT-A-GGGTTGGAGCACCCCT
94144 AAGATGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 1 0.05
27 14 0.67
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAATAGGGTTGGAGCACCCCTTC
Found at i:96692 original size:51 final size:51
Alignment explanation
Indices: 96604--96722 Score: 168
Period size: 51 Copynumber: 2.3 Consensus size: 51
96594 AATAGCTGGC
* *
96604 ATGTATCGATGCAATTTGGTCAAAAACCTAGAATGTATCGATACAATGAATA
1 ATGTATCGATAC-ATTTGGTCAAAAACCTAGAATGTATCGATACAATGAAAA
* * *
96656 ATGTATCGATACATTTGGGTC-AAAACCTAGATTGTATCGATATAGTGAAAA
1 ATGTATCGATACATTT-GGTCAAAAACCTAGAATGTATCGATACAATGAAAA
96707 ATGTATCGATACATTT
1 ATGTATCGATACATTT
96723 TCTTTGCAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
51 46 0.75
52 15 0.25
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.32
Consensus pattern (51 bp):
ATGTATCGATACATTTGGTCAAAAACCTAGAATGTATCGATACAATGAAAA
Found at i:98280 original size:62 final size:62
Alignment explanation
Indices: 98193--98641 Score: 263
Period size: 62 Copynumber: 7.1 Consensus size: 62
98183 AAAGAAAAAG
* * *
98193 AGGCATCCTGCTCTTTGAGGACTAAAAGGT-CCACAAACTTCTGCGGGCTTTTAAAAAGGAAA
1 AGGCGTCCTGCTCTTTGAGGACTAAAAGGTACCAC-AACTTGTGTGGGCTTTTAAAAAGGAAA
* ** * * *
98255 AGGTGTCCTGCTCTTTGAGGACTAAAAGGTGTCACCATTTGTGTGGGCTTTT-AAAAGAAAA
1 AGGCGTCCTGCTCTTTGAGGACTAAAAGGTACCACAACTTGTGTGGGCTTTTAAAAAGGAAA
* * * *
98316 AGGCGTCCTACAT-TTTAAGGACTAAAAGGTACCACCAACTTGTGTAGGCTTTAAAAAGAAAAGG
1 AGGCGTCCTGC-TCTTTGAGGACTAAAAGGTACCA-CAACTTGTGTGGGCTTT---TA-AAAAGG
98380 AAA
60 AAA
* * * ** * * *
98383 A-GCATCCTG-TGTTTTCAGGACTAAAACATGCCATCAACTTATGTGGGC-TTTAAAAAGAAAA
1 AGGCGTCCTGCT-CTTTGAGGACTAAAAGGTACCA-CAACTTGTGTGGGCTTTTAAAAAGGAAA
** * ** * ** * *
98444 AAACATCCTATTCTTTTAGGACTAAAAGGTGTCACCAACTAGTGTGGGC-TTTAAAAAGAAAA
1 AGGCGTCCTGCTCTTTGAGGACTAAAAGGTACCA-CAACTTGTGTGGGCTTTTAAAAAGGAAA
* * * * * * *
98506 AGGTGT-CTAGATCTTTGTGGACTAAAAGGTGCCACCAACTTGTGTGGACTTTAAAGGAAAAAGA
1 AGGCGTCCT-GCTCTTTGAGGACTAAAAGGTACCA-CAACTTGTGTGGGCTTT-TA--AAAAGGA
98570 AA
61 AA
* * * * * *
98572 AGTGC--CTTACTCTTTGAGGACTAAAAGGTGCCACCAACTTTTGTAGGCTTTT-AAAACGAAA
1 AG-GCGTCCTGCTCTTTGAGGACTAAAAGGTACCA-CAACTTGTGTGGGCTTTTAAAAAGGAAA
*
98633 AGGCATCCT
1 AGGCGTCCT
98642 AAAAGGTGCC
Statistics
Matches: 302, Mismatches: 64, Indels: 42
0.74 0.16 0.10
Matches are distributed among these distances:
60 2 0.01
61 56 0.19
62 142 0.47
63 6 0.02
64 2 0.01
65 39 0.13
66 45 0.15
67 10 0.03
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (62 bp):
AGGCGTCCTGCTCTTTGAGGACTAAAAGGTACCACAACTTGTGTGGGCTTTTAAAAAGGAAA
Found at i:98594 original size:189 final size:192
Alignment explanation
Indices: 98148--98912 Score: 621
Period size: 189 Copynumber: 4.1 Consensus size: 192
98138 TGAAGTAGAT
* * *
98148 AGGTACCACCAACTTGTGTGGGCATTTAAAAGGAAAAAGAAAAAGAGGCATCCTGCTCTTTGAGG
1 AGGTGCCACCAACTTGTGTGGGCATTTAAAAGGAAAAAG-AAAAGATGC--CCTACTCTTTGAGG
* * * **** *
98213 ACTAAAAGGT-CCACAAACTTCTGCGGGCTTTTAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGAC
63 ACTAAAAGGTGCCACCAACTTATGTGGGCTTTTAAAAA-GAAAAAAAATCCTACTCTTT-AGGAC
* * * * *
98277 TAAAAGGTGTCACC-ATTTGTGTGGGCTTTTAAAAGAAAAAGGCGTCCTACAT-TTTAAGGACTA
126 TAAAAGGTGTCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTAGATCTTTGAGGACTA
98340 AA
191 AA
* * * * * * *
98342 AGGTACCACCAACTTGTGTAGGC-TTTAAAAAGAAAAGGAAAAGCAT--CCT-GTGTTTTCAGGA
1 AGGTGCCACCAACTTGTGTGGGCATTTAAAAGGAAAAAGAAAAG-ATGCCCTACT-CTTTGAGGA
** * *
98403 CTAAAACATGCCATCAACTTATGTGGGC-TTTAAAAAGAAAAAAACATCCTATTCTTTTAGGACT
64 CTAAAAGGTGCCACCAACTTATGTGGGCTTTTAAAAAGAAAAAAA-ATCCTACTC-TTTAGGACT
* *
98467 AAAAGGTGTCACCAACTAGTGTGGGCTTTAAAAAGAAAAAGGTGT-CTAGATCTTTGTGGACTAA
127 AAAAGGTGTCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTAGATCTTTGAGGACTAA
98531 A
192 A
* *
98532 AGGTGCCACCAACTTGTGTGGAC-TTT-AAAGGAAAAAGAAAAG-TGCCTTACTCTTTGAGGACT
1 AGGTGCCACCAACTTGTGTGGGCATTTAAAAGGAAAAAGAAAAGATGCCCTACTCTTTGAGGACT
* * * **
98594 AAAAGGTGCCACCAACTTTTGTAGGCTTTTAAAACG----AAAAGGC-A-TC-------CTAAAA
66 AAAAGGTGCCACCAACTTATGTGGGCTTTTAAAAAGAAAAAAAATCCTACTCTTTAGGACTAAAA
* * * * * * *
98646 GGTGCCACCAACTTGTTTGGGC-TTCAAAAGAAAAAGAAAACTGT-CTTGCTCTTCGAGGACTAA
131 GGTGTCACCAACTTGTGTGGGCTTTAAAAAGAAAAAG----GTGTCCTAGATCTTTGAGGACTAA
98709 A
192 A
* * * * *
98710 AGGTGCCACCAAATTGTGTGGGCTTTTAAACGG-----TAAAAG-TGCCCTACTCTTTGAGGGCT
1 AGGTGCCACCAACTTGTGTGGGCATTTAAAAGGAAAAAGAAAAGATGCCCTACTCTTTGAGGACT
* * * *
98769 AAAAGGTGCCACCAATTTGTGTGGGC-TTTAAAAGGAAAAGGAAAGGTGCCCTACTCTTTAAGGA
66 AAAAGGTGCCACCAACTTATGTGGGCTTTTAAAAAGAAAA--AAA-AT--CCTACTCTTT-AGGA
* *
98833 CTAAAAGGTGTCACCAACTTGTGTGGGCTTTAAAAA-AAAAAGGTGTCCTA-TTCCTTGAGGACT
125 CTAAAAGGTGTCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTAGATCTTTGAGGACT
98896 AAA
190 AAA
98899 AGGTGCCACCAACT
1 AGGTGCCACCAACT
98913 AGTGAATAAA
Statistics
Matches: 459, Mismatches: 74, Indels: 81
0.75 0.12 0.13
Matches are distributed among these distances:
174 21 0.05
175 71 0.15
178 40 0.09
179 3 0.01
180 7 0.02
183 3 0.01
184 2 0.00
185 4 0.01
186 3 0.01
187 1 0.00
188 6 0.01
189 130 0.28
190 89 0.19
192 5 0.01
193 46 0.10
194 28 0.06
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (192 bp):
AGGTGCCACCAACTTGTGTGGGCATTTAAAAGGAAAAAGAAAAGATGCCCTACTCTTTGAGGACT
AAAAGGTGCCACCAACTTATGTGGGCTTTTAAAAAGAAAAAAAATCCTACTCTTTAGGACTAAAA
GGTGTCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTAGATCTTTGAGGACTAAA
Found at i:98621 original size:127 final size:126
Alignment explanation
Indices: 98148--98912 Score: 625
Period size: 128 Copynumber: 6.1 Consensus size: 126
98138 TGAAGTAGAT
* * * *
98148 AGGTACCACCAACTTGTGTGGGCATTTAAAAGGAAAAAGAAAAAGAGGCATCCTGCTCTTTGAGG
1 AGGTGCCACCAACTTGTGTGGGC-TTTAAAAAGAAAAAG-AAAAG-TG---CCTACTCTTTGAGG
* * * *
98213 ACTAAAAGGT-CCACAAACTTCTGCGGGCTTTTAAAAAGGAAAAGGTGTCCTGCTCTTTGAGGAC
60 ACTAAAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAA-GAAAAGGTGTCCT-ATCTTTGAGGAC
98277 TAAA
123 TAAA
* * * ** *
98281 AGGTGTCACC-ATTTGTGTGGGCTTTTAAAAGAAAAAG--GCGT-CCTACAT-TTTAAGGACTAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGAAAAGTGCCTAC-TCTTTGAGGACTAA
* * * * * *
98341 AAGGTACCACCAACTTGTGTAGGC-TTTAAAAAGAAAAGGAAAAGCATCCTGTGTTTTCAGGACT
65 AAGGTGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAGG---TG--TCCTAT-CTTTGAGGACT
98405 AAA
124 AAA
** * * * * *
98408 ACATGCCATCAACTTATGTGGGCTTTAAAAAGAAAAA-AACA-T-CCTATTCTTTTAGGACTAAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGAAAAGTGCCTACTCTTTGAGGACTAAA
* * *
98470 AGGTGTCACCAACTAGTGTGGGC-TTTAAAAAGAAAAAGGTGT-CTAGATCTTTGTGGACTAAA
66 AGGTGCCACCAACTTGTGTGGGCTTTTAAAAAG-AAAAGGTGTCCT--ATCTTTGAGGACTAAA
* *
98532 AGGTGCCACCAACTTGTGTGGACTTT-AAAGGAAAAAGAAAAGTGCCTTACTCTTTGAGGACTAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGAAAAGTGCC-TACTCTTTGAGGACTAA
* * *
98596 AAGGTGCCACCAACTTTTGTAGGCTTTTAAAACGAAAA-G-G--C-ATC--------CTAAA
65 AAGGTGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAGGTGTCCTATCTTTGAGGACTAAA
* * * * * *
98645 AGGTGCCACCAACTTGTTTGGGC-TTCAAAAGAAAAAGAAAACTGTCTTGCTCTTCGAGGACTAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGAAAAGTG-CCTACTCTTTGAGGACTAA
* ** * *
98709 AAGGTGCCACCAAATTGTGTGGGCTTTTAAACGGTAAAA-GTGCCCTACTCTTTGAGGGCTAAA
65 AAGGTGCCACCAACTTGTGTGGGCTTTTAAAAAG-AAAAGGTGTCCTA-TCTTTGAGGACTAAA
* * * * *
98772 AGGTGCCACCAATTTGTGTGGGCTTTAAAAGGAAAAGGAAAGGTGCCCTACTCTTTAAGGACTAA
1 AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGAAAAGTG-CCTACTCTTTGAGGACTAA
* * *
98837 AAGGTGTCACCAACTTGTGTGGGC-TTTAAAAAAAAAAGGTGTCCTATTCCTTGAGGACTAAA
65 AAGGTGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAGGTGTCCTA-TCTTTGAGGACTAAA
98899 AGGTGCCACCAACT
1 AGGTGCCACCAACT
98913 AGTGAATAAA
Statistics
Matches: 508, Mismatches: 86, Indels: 82
0.75 0.13 0.12
Matches are distributed among these distances:
112 2 0.00
113 86 0.17
114 6 0.01
115 1 0.00
117 1 0.00
118 1 0.00
119 2 0.00
121 3 0.01
122 7 0.01
123 39 0.08
124 52 0.10
125 4 0.01
126 9 0.02
127 127 0.25
128 130 0.26
129 6 0.01
131 13 0.03
132 11 0.02
133 8 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (126 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGAAAAGTGCCTACTCTTTGAGGACTAAA
AGGTGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAGGTGTCCTATCTTTGAGGACTAAA
Found at i:98734 original size:113 final size:113
Alignment explanation
Indices: 98527--98739 Score: 327
Period size: 113 Copynumber: 1.9 Consensus size: 113
98517 TCTTTGTGGA
* * * *
98527 CTAAAAGGTGCCACCAACTTGTGTGGACTTTAAAGGAAAAAGAAAAGTGCCTTACTCTTTGAGGA
1 CTAAAAGGTGCCACCAACTTGTGTGGACTTCAAAAGAAAAAGAAAACTGCCTTACTCTTCGAGGA
* *
98592 CTAAAAGGTGCCACCAACTTTTGTAGGCTTTTAAAACGAAAAGGCATC
66 CTAAAAGGTGCCACCAAATTGTGTAGGCTTTTAAAACGAAAAGGCATC
* * * *
98640 CTAAAAGGTGCCACCAACTTGTTTGGGCTTCAAAAGAAAAAGAAAACTGTCTTGCTCTTCGAGGA
1 CTAAAAGGTGCCACCAACTTGTGTGGACTTCAAAAGAAAAAGAAAACTGCCTTACTCTTCGAGGA
*
98705 CTAAAAGGTGCCACCAAATTGTGTGGGCTTTTAAA
66 CTAAAAGGTGCCACCAAATTGTGTAGGCTTTTAAA
98740 CGGTAAAAGT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
113 89 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (113 bp):
CTAAAAGGTGCCACCAACTTGTGTGGACTTCAAAAGAAAAAGAAAACTGCCTTACTCTTCGAGGA
CTAAAAGGTGCCACCAAATTGTGTAGGCTTTTAAAACGAAAAGGCATC
Found at i:98760 original size:175 final size:170
Alignment explanation
Indices: 98465--98809 Score: 417
Period size: 175 Copynumber: 2.0 Consensus size: 170
98455 TCTTTTAGGA
* * * *
98465 CTAAAAGGTGTCACCAACTAGTGTGGGCTTTAAAAAGAAAAAGGTGTCTAGATCTTTGTGGACTA
1 CTAAAAGGTGCCACCAACTAGTGTGGGCTTTAAAAAGAAAAAGCTGTCTAGATCTTCGAGGACTA
* *
98530 AAAGGTGCCACCAACTTGTGTGGACTTTAAAGGAAAAAGAAAAGTGCCTTACTCTTTGAGGACTA
66 AAAGGTGCCACCAAATTGTGTGGACTTTAAAGG----AGAAAAGTGCCCTACTCTTTGAGGACTA
98595 AAAGGTGCCACCAACTTT-TGTAGGCTTTTAAAACGAAAAGGCATC
127 AAAGGTGCCACCAA-TTTGTGTAGGC-TTTAAAACGAAAAGGCATC
* * * * *
98640 CTAAAAGGTGCCACCAACTTGTTTGGGC-TTCAAAAGAAAAAGAAAACTGTCTTGCTCTTCGAGG
1 CTAAAAGGTGCCACCAACTAGTGTGGGCTTTAAAAAGAAAAAG----CTGTCTAGATCTTCGAGG
* * *
98704 ACTAAAAGGTGCCACCAAATTGTGTGGGCTTTTAAACGG-TAAAAGTGCCCTACTCTTTGAGGGC
62 ACTAAAAGGTGCCACCAAATTGTGTGGAC-TTTAAA-GGAGAAAAGTGCCCTACTCTTTGAGGAC
* *
98768 TAAAAGGTGCCACCAATTTGTGTGGGCTTTAAAAGGAAAAGG
125 TAAAAGGTGCCACCAATTTGTGTAGGCTTTAAAACGAAAAGG
98810 AAAGGTGCCC
Statistics
Matches: 147, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
174 30 0.20
175 69 0.47
178 40 0.27
179 6 0.04
180 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (170 bp):
CTAAAAGGTGCCACCAACTAGTGTGGGCTTTAAAAAGAAAAAGCTGTCTAGATCTTCGAGGACTA
AAAGGTGCCACCAAATTGTGTGGACTTTAAAGGAGAAAAGTGCCCTACTCTTTGAGGACTAAAAG
GTGCCACCAATTTGTGTAGGCTTTAAAACGAAAAGGCATC
Found at i:98848 original size:66 final size:63
Alignment explanation
Indices: 98640--98912 Score: 293
Period size: 66 Copynumber: 4.3 Consensus size: 63
98630 AAAAGGCATC
* * ** * * * *
98640 CTAAAAGGTGCCACCAACTTGTTTGGGCTTCAAAAGAAAAAGAAAACTGTCTTGCTCTTCGAGGA
1 CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAA-AAAGGTGCCCTACTCTTTGAGGA
* * ** *
98705 CTAAAAGGTGCCACCAAATTGTGTGGGCTTTTAAACG-GTAAAA-GTGCCCTACTCTTTGAGGG
1 CTAAAAGGTGCCACCAACTTGTGTGGGC-TTTAAAAGAAAAAAAGGTGCCCTACTCTTTGAGGA
* *
98767 CTAAAAGGTGCCACCAATTTGTGTGGGCTTTAAAAGGAAAAGGAAAGGTGCCCTACTCTTTAAGG
1 CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAA--AAAGGTGCCCTACTCTTTGAGG
98832 A
63 A
* * * *
98833 CTAAAAGGTGTCACCAACTTGTGTGGGCTTT-AAA-AAAAAAAGGTGTCCTATTCCTTGAGGA
1 CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAAGGTGCCCTACTCTTTGAGGA
98894 CTAAAAGGTGCCACCAACT
1 CTAAAAGGTGCCACCAACT
98913 AGTGAATAAA
Statistics
Matches: 177, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
61 43 0.24
62 41 0.23
63 8 0.05
64 1 0.01
65 32 0.18
66 52 0.29
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (63 bp):
CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAAGGTGCCCTACTCTTTGAGGA
Found at i:99610 original size:20 final size:20
Alignment explanation
Indices: 99587--99659 Score: 80
Period size: 20 Copynumber: 3.6 Consensus size: 20
99577 CTATTTTTTC
99587 CTTTTTTTCTTTTTTGTGTT
1 CTTTTTTTCTTTTTTGTGTT
99607 CTTTTTTT-TGTTTTTGT-TT
1 CTTTTTTTCT-TTTTTGTGTT
* *
99626 ATTTTTTTCTTTTTTATTGTT
1 CTTTTTTTCTTTTTT-GTGTT
99647 -TTCTTTTTCTTTT
1 CTT-TTTTTCTTTT
99660 GTTTTTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
19 15 0.33
20 19 0.41
21 12 0.26
ACGTcount: A:0.03, C:0.08, G:0.07, T:0.82
Consensus pattern (20 bp):
CTTTTTTTCTTTTTTGTGTT
Found at i:99614 original size:15 final size:14
Alignment explanation
Indices: 99596--99668 Score: 64
Period size: 14 Copynumber: 5.1 Consensus size: 14
99586 CCTTTTTTTC
99596 TTTTTTGTGTTC-TT
1 TTTTTTGT-TTCTTT
99610 TTTTTTGTTT-TTGT
1 TTTTTTGTTTCTT-T
99624 TTATTTT-TTTCTTT
1 TT-TTTTGTTTCTTT
*
99638 TTTATTGTTTTCTTT
1 TTTTTTG-TTTCTTT
99653 TTCTTTTGTTT-TTT
1 TT-TTTTGTTTCTTT
99667 TT
1 TT
99669 ACACGTAGTA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
13 6 0.12
14 22 0.44
15 18 0.36
16 4 0.08
ACGTcount: A:0.03, C:0.05, G:0.08, T:0.84
Consensus pattern (14 bp):
TTTTTTGTTTCTTT
Found at i:99614 original size:21 final size:20
Alignment explanation
Indices: 99588--99659 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
99578 TATTTTTTCC
99588 TTTTTTTCTTTTTTGTGTTCT
1 TTTTTTTCTTTTTTGTGTT-T
* *
99609 TTTTTTT-GTTTTTGT-TTA
1 TTTTTTTCTTTTTTGTGTTT
*
99627 TTTTTTTCTTTTTTATTGTTT
1 TTTTTTTCTTTTTT-GTGTTT
*
99648 TCTTTTTCTTTT
1 TTTTTTTCTTTT
99660 GTTTTTTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.17
19 7 0.17
20 8 0.19
21 20 0.48
ACGTcount: A:0.03, C:0.07, G:0.07, T:0.83
Consensus pattern (20 bp):
TTTTTTTCTTTTTTGTGTTT
Found at i:99654 original size:39 final size:37
Alignment explanation
Indices: 99588--99668 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 37
99578 TATTTTTTCC
* *
99588 TTTTTTTCTTTTTTGTGTTCTTTTTTTTGTTTTTGTTT
1 TTTTTTTCTTTTTTGTGTTCTTCTTTTT-CTTTTGTTT
*
99626 ATTTTTTTCTTTTTTATTGTT-TTCTTTTTCTTTTGTTT
1 -TTTTTTTCTTTTTT-GTGTTCTTCTTTTTCTTTTGTTT
99664 TTTTT
1 TTTTT
99669 ACACGTAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 5 0.13
38 8 0.21
39 21 0.55
40 4 0.11
ACGTcount: A:0.02, C:0.06, G:0.07, T:0.84
Consensus pattern (37 bp):
TTTTTTTCTTTTTTGTGTTCTTCTTTTTCTTTTGTTT
Found at i:100891 original size:50 final size:51
Alignment explanation
Indices: 100825--100945 Score: 172
Period size: 51 Copynumber: 2.4 Consensus size: 51
100815 CGATGCAACC
* * *
100825 TTCATTGCATCGATACATTCTGGGTTTT-ACCCAGATGTATCAATACATTT
1 TTCATTGTATCGATACATTCTGGGTTTTAACACAGATATATCAATACATTT
* *
100875 TTCATTGTATCCATACATTCTGGGTTTTAACACAGATATATCGATACATTT
1 TTCATTGTATCGATACATTCTGGGTTTTAACACAGATATATCAATACATTT
* *
100926 CTCAATGTATCGATACATTC
1 TTCATTGTATCGATACATTC
100946 AAGCATTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
50 26 0.42
51 36 0.58
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (51 bp):
TTCATTGTATCGATACATTCTGGGTTTTAACACAGATATATCAATACATTT
Found at i:102036 original size:62 final size:62
Alignment explanation
Indices: 101875--102336 Score: 527
Period size: 62 Copynumber: 7.3 Consensus size: 62
101865 TAAAAAGAAA
* * * *
101875 AAAAAAAAAGAGGCATCC-AGCTCTTTGAGGACTAAAAGGTGGCAGCAACTTGTGTGGGTCTTTA
1 AAAAGAAAA-AGGCATCCTA-CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGG-CTTTT
*
101939 AAAAGGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
1 AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
* *
102001 AAAAGAAAAAGGCATCCTACTCATTGAGGACTAAAAGGTGCCACCAATTTGTGTGGGC-TTT
1 AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
* * * *
102062 AAAAGAAAAAGAAAAGGCGTCGTGCT-TTTGGAGGACTAAAAGGTGCCACCAACTTGTGTGGCCT
1 AAAAG----A-AAAAGGCATCCTACTCTTT-GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCT
*
102126 TTA
60 TTT
* * * * * *
102129 AAAAGAAAAAGGTATCATGCTCTTTGAGGACTAAAAGGTACCATCAACTTGTGTGGGCTTTA
1 AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
** * * *
102191 AAAAGAAAAAGGTTTCCTACTCTTTGTGGACTAAAAGGTGCCACCAACTTTTGTTGGC-TTT
1 AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
** * *
102252 AAAAGAAAAAGAAAAGTGCCCTACTTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTT
1 AAAAGAAAAAG-GCA-T--CCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
102317 T
62 T
*
102318 AAAAGGAAAAGGCATCCTA
1 AAAAGAAAAAGGCATCCTA
102337 AAAGGTGCCA
Statistics
Matches: 344, Mismatches: 40, Indels: 30
0.83 0.10 0.07
Matches are distributed among these distances:
61 21 0.06
62 159 0.46
63 49 0.14
64 9 0.03
65 43 0.12
66 56 0.16
67 7 0.02
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (62 bp):
AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
Found at i:102112 original size:128 final size:125
Alignment explanation
Indices: 101875--102541 Score: 588
Period size: 128 Copynumber: 5.4 Consensus size: 125
101865 TAAAAAGAAA
* * *
101875 AAAAAAAAAGAGGCATCC-AGCTCTTTGAGGACTAAAAGGTGGCAGCAACTTGTGTGGGTCTTT-
1 AAAAGAAAA-AGGCATCCTA-CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGG-CTTTA
*
101938 AAAAAGGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
63 AAAAAAGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
* *
102001 AAAAGAAAAAGGCATCCTACTCATTGAGGACTAAAAGGTGCCACCAATTTGTGTGGGCTTTAAAA
1 AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT--AA
* * * * *
102066 GAAAAAGAAAAGGCGTCGTGCT-TTTGGAGGACTAAAAGGTGCCACCAACTTGTGTGGCCTTTA
64 -AAAAAGAAAAGGCATCCTACTCTTT-GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
* * * * *
102129 AAAAGAAAAAGGTATCATGCTCTTTGAGGACTAAAAGGTACCATCAACTTGTGTGGGCTTTAAAA
1 AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
* ** * * *
102194 AGA-AAAAGGTTTCCTACTCTTTGTGGACTAAAAGGTGCCACCAACTTTTGTTGGC-TTT
66 AAAGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
** * *
102252 AAAAGAAAAAGAAAAGTGCCCTACTTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTT
1 AAAAGAAAAAG-GCA-T--CCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * *
102317 -TAAAAGGAAAAGG----C-A-TC--------CTAAAAGGTGCCACCAATTTGTGCGAGC-TTC
62 AAAAAAAGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
** * * * **
102365 AAAAGAAAAAGAAAAGTGTCCTGCTCCTTAAGGACTAAAAGGTGCCATTAACTTGTGTGGGCTTT
1 AAAAGAAAAAG----GCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
** * * *
102430 TTAAAAAGAAAAGTG--TCCTACTCTTTGAGGACTAAAAGGTACTACCAACTTGTGTGGGCTTTC
62 AAAAAAAGAAAAG-GCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
* * * * *
102493 AAAGGAAAAAGGCGTCCTACTCCTTAAGGACTAAAAGTTGCCACCAACT
1 AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACT
102542 AGTGAATAAA
Statistics
Matches: 444, Mismatches: 67, Indels: 62
0.77 0.12 0.11
Matches are distributed among these distances:
113 75 0.17
114 11 0.02
115 2 0.00
116 1 0.00
117 1 0.00
118 1 0.00
119 2 0.00
121 2 0.00
122 1 0.00
123 14 0.03
124 78 0.18
125 50 0.11
126 14 0.03
127 73 0.16
128 119 0.27
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (125 bp):
AAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
AAAGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
Found at i:102179 original size:190 final size:189
Alignment explanation
Indices: 101842--102333 Score: 632
Period size: 190 Copynumber: 2.6 Consensus size: 189
101832 AGTAAATAGT
* * *
101842 TGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAAAAAAAAAGAGGCATCCAGCTCTTTGAGGAC
1 TGCCACCAATTTGTGTGGGC-TTT-AAAAG---AAAAAGAAA-AGGC-TCCTGCT-TTTGAGGAC
* * * * * *
101907 TAAAAGGTGGCAGCAACTTGTGTGGGTCTTTAAAAAGGAAAAGGCATCCTACTCTTTGAGGACTA
58 TAAAAGGTGCCACCAACTTGTGTAGGCCTTTAAAAAGAAAAAGGCATCATACTCTTTGAGGACTA
* *
101972 AAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAAGGCATCCTACTCATTGAGGACTAAAA
123 AAAGGTACCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCATCCTACTCATTGAGGACTAAAA
102037 GG
188 GG
*
102039 TGCCACCAATTTGTGTGGGCTTTAAAAGAAAAAGAAAAGGCGTCGTGCTTTTGGAGGACTAAAAG
1 TGCCACCAATTTGTGTGGGCTTTAAAAGAAAAAGAAAAGGC-TCCTGCTTTT-GAGGACTAAAAG
* *
102104 GTGCCACCAACTTGTGT-GGCCTTTAAAAAGAAAAAGGTATCATGCTCTTTGAGGACTAAAAGGT
64 GTGCCACCAACTTGTGTAGGCCTTTAAAAAGAAAAAGGCATCATACTCTTTGAGGACTAAAAGGT
* ** * *
102168 ACCATCAACTTGTGTGGGCTTTAAAAAGAAAAAGGTTTCCTACTCTTTGTGGACTAAAAGG
129 ACCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCATCCTACTCATTGAGGACTAAAAGG
* *
102229 TGCCACCAACTTT-TGTTGGCTTTAAAAGAAAAAGAAAAGTGC-CCTACTTTTTGAGGACTAAAA
1 TGCCACCAA-TTTGTGTGGGCTTTAAAAGAAAAAGAAAAG-GCTCCTGC-TTTTGAGGACTAAAA
* *
102292 GGTGCCACCAACTTGTGTAGG-CTTTTAAAAGGAAAAGGCATC
63 GGTGCCACCAACTTGTGTAGGCCTTTAAAAAGAAAAAGGCATC
102334 CTAAAAGGTG
Statistics
Matches: 265, Mismatches: 25, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
189 50 0.19
190 139 0.52
191 41 0.15
192 8 0.03
195 5 0.02
196 3 0.01
197 19 0.07
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (189 bp):
TGCCACCAATTTGTGTGGGCTTTAAAAGAAAAAGAAAAGGCTCCTGCTTTTGAGGACTAAAAGGT
GCCACCAACTTGTGTAGGCCTTTAAAAAGAAAAAGGCATCATACTCTTTGAGGACTAAAAGGTAC
CACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCATCCTACTCATTGAGGACTAAAAGG
Found at i:102419 original size:113 final size:114
Alignment explanation
Indices: 102221--102442 Score: 306
Period size: 113 Copynumber: 2.0 Consensus size: 114
102211 TCTTTGTGGA
* * ** *
102221 CTAAAAGGTGCCACCAACTTTTGTTGGCTTTAAAAGAAAAAGAAAAGTGCCCTACTTTTTGAGGA
1 CTAAAAGGTGCCACCAACTTTTGTCGGCTTCAAAAGAAAAAGAAAAGTGCCCTACTCCTTAAGGA
*
102286 CTAAAAGGTGCCACCAACTTGTGTAGGC-TTTTAAAAGGAAAAGGCATC
66 CTAAAAGGTGCCACCAACTTGTGTAGGCTTTTTAAAAAGAAAAGGCATC
* *
102334 CTAAAAGGTGCCACCAA--TTTGTGCGAGCTTCAAAAGAAAAAGAAAAGTGTCCTGCTCCTTAAG
1 CTAAAAGGTGCCACCAACTTTTGT-CG-GCTTCAAAAGAAAAAGAAAAGTGCCCTACTCCTTAAG
** *
102397 GACTAAAAGGTGCCATTAACTTGTGTGGGCTTTTTAAAAAGAAAAG
64 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTTTAAAAAGAAAAG
102443 TGTCCTACTC
Statistics
Matches: 95, Mismatches: 11, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
111 5 0.05
112 1 0.01
113 75 0.79
114 14 0.15
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (114 bp):
CTAAAAGGTGCCACCAACTTTTGTCGGCTTCAAAAGAAAAAGAAAAGTGCCCTACTCCTTAAGGA
CTAAAAGGTGCCACCAACTTGTGTAGGCTTTTTAAAAAGAAAAGGCATC
Found at i:102461 original size:62 final size:61
Alignment explanation
Indices: 102370--102541 Score: 211
Period size: 62 Copynumber: 2.8 Consensus size: 61
102360 GCTTCAAAAG
* ** *
102370 AAAAAGAAAAGTGTCCTGCTCCTTAAGGACTAAAAGGTGCCATTAACTTGTGTGGGCTTTTT
1 AAAAAGAAAAGTGTCCTACTCCTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGC-TTTC
* * * *
102432 AAAAAGAAAAGTGTCCTACTCTTTGAGGACTAAAAGGTACTACCAACTTGTGTGGGCTTTC
1 AAAAAGAAAAGTGTCCTACTCCTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTC
* * *
102493 AAAGGAA-AAAGGCGTCCTACTCCTTAAGGACTAAAAGTTGCCACCAACT
1 AAA--AAGAAAAGTGTCCTACTCCTTAAGGACTAAAAGGTGCCACCAACT
102542 AGTGAATAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
61 6 0.06
62 85 0.91
63 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (61 bp):
AAAAAGAAAAGTGTCCTACTCCTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTC
Found at i:104507 original size:50 final size:51
Alignment explanation
Indices: 104450--104567 Score: 177
Period size: 51 Copynumber: 2.3 Consensus size: 51
104440 TACATCCTTT
*
104450 ATTGTATCGATACATTCTGGGTTTT-ACCCAAATGTATCGAGACAGTTT-TC
1 ATTGTATCGATACATTCTGGGTTTTAACCCAAATGTATCCAGACA-TTTCTC
* *
104500 ATTGTATCAATACATTCTGGGTTTTAACCCAAATGTATCCATACATTTCTC
1 ATTGTATCGATACATTCTGGGTTTTAACCCAAATGTATCCAGACATTTCTC
*
104551 AATGTATCGATACATTC
1 ATTGTATCGATACATTC
104568 AAGCATTTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
50 27 0.44
51 34 0.56
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (51 bp):
ATTGTATCGATACATTCTGGGTTTTAACCCAAATGTATCCAGACATTTCTC
Found at i:106480 original size:62 final size:62
Alignment explanation
Indices: 106311--106771 Score: 516
Period size: 62 Copynumber: 7.3 Consensus size: 62
106301 TTTAAAAAGA
* *
106311 AAAAAAAAAGAGGCATCCTGCTCTTTGAGGACTAAAAGGTGTCACCAACTTGTGTGGGCTTTT
1 AAAAGAAAA-AGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
*
106374 AAAGAGGAAAAA-GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
1 AAA-A-GAAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
* * *
106437 AAAAGAAAAAGGCATCTTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGC-TTT
1 AAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
* * *
106498 AAAAGGAAAAGGAAAGGCATCATGCT-TTTGGAAGACTAAAAGGTGCCACCAACTTGTGTGGCCT
1 AAAA-G--AA--AAAGGCATCCTGCTCTTT-GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCT
*
106562 TTA
60 TTT
* * * * *
106565 AAAAGAAAAAGGAATCCTGCTCTTTGAAGAGTAAAAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
** * * * *
106627 AAAAGAAAAAGGTGTCCTGCTTTTTGTGGGCTAAAAGGTGCTACCAACTTGTGTGGGC-TTT
1 AAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
** ** * * *
106688 AAAAGAAAAAGAAAAGTGCCCTATTCTTTGAGGTCTAAAAGGTGCCATCAACTTGTGTAGGCTTT
1 AAAAGAAAAAG-GCA-T--CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
106753 T
62 T
*
106754 AAAAGGAAAAGGCATCCT
1 AAAAGAAAAAGGCATCCT
106772 AAAAGGTGTC
Statistics
Matches: 340, Mismatches: 42, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
61 26 0.08
62 143 0.42
63 59 0.17
64 7 0.02
65 43 0.13
66 56 0.16
67 6 0.02
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26
Consensus pattern (62 bp):
AAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTT
Found at i:106588 original size:128 final size:126
Alignment explanation
Indices: 106310--107041 Score: 587
Period size: 128 Copynumber: 5.9 Consensus size: 126
106300 TTTTAAAAAG
* * * * *
106310 AAAAAAAAAAGAGGCATCCTGCTCTTTGAGGACTAAAAGGTGTCACCAACTTGTGTGGGCTTTTA
1 AAAAAGAAAA-AGGAATCCTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTTTTA
106375 AAGAGG--AAAAA-GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
65 AA-AGGAAAAAAAGGCGTCCTGCT-TTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
106436 TAAAAGAAAAAGGCATCTTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGC-TTTAA
1 AAAAAGAAAAAGGAATCCTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTTTTAA
* * * *
106500 AAGGAAAAGGAAAGGCATCATGCTTTTGGAAGACTAAAAGGTGCCACCAACTTGTGTGGCCTTT
66 AAGGAAAA--AAAGGCGTCCTGCTTTT-GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
106564 AAAAAGAAAAAGGAATCCTGCTCTTTGAAGAGTAAAAAGTGCCACCAACTTGTGTGGGC-TTTAA
1 AAAAAGAAAAAGGAATCCTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTTTTAA
* * * * *
106628 AA--AGAAAAAGGTGTCCTGCTTTTTGTGGGCTAAAAGGTGCTACCAACTTGTGTGGGCTTT
66 AAGGAAAAAAAGGCGTCCTGC-TTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
106688 -AAAAGAAAAAGAAAAGTGCCCTATTCTTTGAGG-TCTAAAAGGTGCCATCAACTTGTGTAGGCT
1 AAAAAGAAAAAG-GAA-T--CCTACTCTTTGAGGAT-TAAAAGGTGCCACCAACTTGTGTGGGCT
* *
106751 TTTAAAAGG---AAAA-G-G-CAT-C---------CTAAAAGGTGTCACCAACTTGTGTGGGC-T
61 TTTAAAAGGAAAAAAAGGCGTCCTGCTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTT
106799 T
126 T
* * * * * **
106800 CAAAAGAAAAAGAAAAGTGTCTTACTCTTTAAGGACT-AAAGGTGCCAGTAACTTGTGTGGGCTT
1 AAAAAGAAAAAG-GAA---TCCTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTT
* * * * *
106864 TTAAAAGG-AAAAAA--TGTCCTACTCTATGAGGATTAAAAGGTACCACCAACTTGTGTGGGCTT
62 TTAAAAGGAAAAAAAGGCGTCCTGCT-TTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTT
106926 T
126 T
* ** * * *
106927 AAAAGGAAAAAAAAAGTTGTCCTACTCTTTGAGGACTAAAAGCTGCAACCAACTTGTGTGGG--T
1 AAAAAGAAAAAGGAA----TCCTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTT
* * * *
106990 TTAAAA--AGAAAAAGGTGTCCTGCTCCTTGAGGACTAAAAAGTGCCACCAACT
62 TTAAAAGGAAAAAAAGGCGTCCTGCT-TTTGAGGACTAAAAGGTGCCACCAACT
107042 AGTGAATAAA
Statistics
Matches: 501, Mismatches: 65, Indels: 79
0.78 0.10 0.12
Matches are distributed among these distances:
112 34 0.07
113 53 0.11
114 5 0.01
115 4 0.01
116 1 0.00
123 15 0.03
124 51 0.10
125 58 0.12
126 47 0.09
127 105 0.21
128 128 0.26
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (126 bp):
AAAAAGAAAAAGGAATCCTACTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTTTTAA
AAGGAAAAAAAGGCGTCCTGCTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:106622 original size:190 final size:189
Alignment explanation
Indices: 106280--107041 Score: 601
Period size: 190 Copynumber: 4.1 Consensus size: 189
106270 AGTAGATAGA
* * *
106280 TGCCACCAACTTGTGTGGACTTTTAAAAAGAAAAAAAAAAGAGGCATCCTGCTCTTTGAGGACTA
1 TGCCACCAACTTGTGTGGGC-TTT-AAAAG-AAAAAGAAA-AGGCATCATGCT-TTTGAGGACTA
* * * * *
106345 AAAGGTGTCACCAACTTGTGTGGGCTTTTAAAGAGGAAAAAGCG-TCCTGCTCTTTGAGGACTAA
61 AAAGGTGCCACCAACTTGTGTAGGCCTTTAAA-AAGAAAAAG-GATCCTGCTCTTTGAAGACTAA
* * * *
106409 AAGGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAAGGCATCTTACTCTTTGAGGATTAAAAG
124 AAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAG
106474 G
189 G
* * *
106475 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGAAAGGCATCATGCTTTTGGAAGACTAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGGCATCATGCTTTT-GAGGACTAAAAG
*
106540 GTGCCACCAACTTGTGT-GGCCTTTAAAAAGAAAAAGGAATCCTGCTCTTTGAAGAGTAAAAAGT
65 GTGCCACCAACTTGTGTAGGCCTTTAAAAAGAAAAAGG-ATCCTGCTCTTTGAAGACTAAAAAGT
** * * * *
106604 GCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTGCTTTTTGTGGGCTAAAAGG
129 GCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGG
* * * *
106665 TGCTACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGTGC-CCTATTC-TTTGAGGTCTAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAG-GCATC-ATGCTTTTGAGGACTAAAA
* * * * *
106728 GGTGCCATCAACTTGTGTAGG-CTTTTAAAAGGAAAAGG---C--ATC--------CTAAAAGGT
64 GGTGCCACCAACTTGTGTAGGCCTTTAAAAAGAAAAAGGATCCTGCTCTTTGAAGACTAAAAAGT
* * ** * *
106779 GTCACCAACTTGTGTGGGC-TTCAAAAGAAAAAGAAAAGTGTCTTACTCTTTAAGGACT-AAAGG
129 GCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAG----GCATCCTACTCTTTGAGGACTAAAAGG
** * * * * * *
106842 TGCCAGTAACTTGTGTGGGCTTTTAAAAG--GAA-AAAATG--TCCTACTCTATGAGGATTAAAA
1 TGCCACCAACTTGTGTGGGC-TTTAAAAGAAAAAGAAAAGGCATCATGCT-TTTGAGGACTAAAA
* * * * *
106902 GGTACCACCAACTTGTGT-GGGCTTTAAAAGGAAAAAAAAAGTTG-TCCTACTCTTTGAGGACT-
64 GGTGCCACCAACTTGTGTAGGCCTTT--AA--AAAGAAAAAG--GATCCTGCTCTTTGAAGACTA
* ** * *
106964 AAAAGCTGCAACCAACTTGTGTGGG-TTTAAAAAGAAAAAGGTGTCCTGCTCCTTGAGGACTAAA
123 AAAAG-TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAA
*
107028 AAG
187 AGG
107031 TGCCACCAACT
1 TGCCACCAACT
107042 AGTGAATAAA
Statistics
Matches: 462, Mismatches: 70, Indels: 76
0.76 0.12 0.12
Matches are distributed among these distances:
172 2 0.00
173 3 0.01
174 45 0.10
175 29 0.06
176 3 0.01
177 22 0.05
178 31 0.07
180 1 0.00
182 1 0.00
183 2 0.00
184 2 0.00
185 1 0.00
188 18 0.04
189 62 0.13
190 128 0.28
191 47 0.10
192 38 0.08
193 5 0.01
194 3 0.01
195 19 0.04
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (189 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGGCATCATGCTTTTGAGGACTAAAAGG
TGCCACCAACTTGTGTAGGCCTTTAAAAAGAAAAAGGATCCTGCTCTTTGAAGACTAAAAAGTGC
CACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGG
Found at i:106764 original size:127 final size:126
Alignment explanation
Indices: 106280--107041 Score: 728
Period size: 127 Copynumber: 6.1 Consensus size: 126
106270 AGTAGATAGA
* * * *
106280 TGCCACCAACTTGTGTGGACTTTTAAAAAGAAAAAAAAAAGAGGCATCCTGCTCTTTGAGGACTA
1 TGCCACCAACTTGTGTGGGC-TTT-AAAAGAAAAAGAAAAG-TG---CCTACTCTTTGAGGACTA
* * *
106345 AAAGGTGTCACCAACTTGTGTGGGCTTTTAAAGAGGAAAAAGCGTCCTGCTCTTTGAGGACTAAA
60 AAAGGTGCCACCAACTTGTGTGGGCTTTTAAA-AGGAAAAGGTGTCCTGCTCTTTGAGGACTAAA
106410 AGG
124 AGG
** * *
106413 TGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAAG-GCA-T-CTTACTCTTTGAGGATTAAAAGG
1 TGCCACCAACTTGTGTGGGC-TTTAAAAGAAAAAGAAAAGTGCCTACTCTTTGAGGACTAAAAGG
* * *
106475 TGCCACCAACTTGTGTGGGC-TTTAAAAGGAAAAGGAAAGGCATCATGCT-TTTGGAAGACTAAA
65 TGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAGG---TG--TCCTGCTCTTT-GAGGACTAAA
106538 AGG
124 AGG
* * * * * *
106541 TGCCACCAACTTGTGTGGCCTTTAAAAAGAAAAAG-GAA-T-CCTGCTCTTTGAAGAGTAAAAAG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGAAAAGTGCCTACTCTTTGAGGACTAAAAGG
* * * * *
106603 TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTGCTTTTTGTGGGCTAAAAGG
65 TGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGG
* * *
106665 TGCTACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGTGCCCTATTCTTTGAGGTCTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGTG-CCTACTCTTTGAGGACTAAAAGG
* * *
106730 TGCCATCAACTTGTGTAGGCTTTTAAAAGGAAAA-G-G--C--ATC--------CTAAAAGG
65 TGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGG
* * * *
106778 TGTCACCAACTTGTGTGGGCTTCAAAAGAAAAAGAAAAGTGTCTTACTCTTTAAGGACT-AAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGTG-CCTACTCTTTGAGGACTAAAAGG
** ** * * *
106842 TGCCAGTAACTTGTGTGGGCTTTTAAAAGGAAAAAATGTCCTACTCTATGAGGATTAAAAGG
65 TGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGG
*
106904 TACCACCAACTTGTGTGGGCTTTAAAAGGAAAAA-AAAAGTTGTCCTACTCTTTGAGGACTAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAAGAAAAG-TG-CCTACTCTTTGAGGACTAAAA
* * * * * *
106968 GCTGCAACCAACTTGTGTGGG-TTTAAAAAGAAAAAGGTGTCCTGCTCCTTGAGGACTAAAAAG
63 GGTGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGG
107031 TGCCACCAACT
1 TGCCACCAACT
107042 AGTGAATAAA
Statistics
Matches: 524, Mismatches: 75, Indels: 66
0.79 0.11 0.10
Matches are distributed among these distances:
112 36 0.07
113 59 0.11
114 1 0.00
116 1 0.00
118 2 0.00
121 1 0.00
123 20 0.04
124 45 0.09
125 44 0.08
126 39 0.07
127 120 0.23
128 109 0.21
129 13 0.02
131 1 0.00
132 10 0.02
133 23 0.04
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (126 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGAAAAGTGCCTACTCTTTGAGGACTAAAAGGT
GCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGG
Found at i:106967 original size:66 final size:64
Alignment explanation
Indices: 106770--107041 Score: 306
Period size: 61 Copynumber: 4.3 Consensus size: 64
106760 AAAAGGCATC
* * * *
106770 CTAAAAGGTGTCACCAACTTGTGTGGGCTTCAAAAGAAAAAGAAAAGTGTCTTACTCTTTAAGGA
1 CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAA-AAAAGTGTCCTACTCTTTGAGGA
** * *
106835 CT-AAAGGTGCCAGTAACTTGTGTGGGCTTTTAAAAG--GAAAAAA-TGTCCTACTCTATGAGGA
1 CTAAAAGGTGCCACCAACTTGTGTGGGC-TTTAAAAGAAAAAAAAAGTGTCCTACTCTTTGAGGA
* *
106896 TTAAAAGGTACCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAAAAGTTGTCCTACTCTTTGAGG
1 CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAAAAAAG-TGTCCTACTCTTTGAGG
106961 A
64 A
* * * * * *
106962 CTAAAAGCTGCAACCAACTTGTGTGGG-TTT-AAA-AAGAAAAAGGTGTCCTGCTCCTTGAGGA
1 CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAAAAGTGTCCTACTCTTTGAGGA
*
107023 CTAAAAAGTGCCACCAACT
1 CTAAAAGGTGCCACCAACT
107042 AGTGAATAAA
Statistics
Matches: 175, Mismatches: 25, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
61 55 0.31
62 35 0.20
63 2 0.01
64 31 0.18
65 12 0.07
66 40 0.23
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (64 bp):
CTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAAAAGTGTCCTACTCTTTGAGGA
Found at i:107774 original size:16 final size:17
Alignment explanation
Indices: 107755--107789 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
107745 TTTTCTTCTA
107755 TTTTGTGTTTGTTT-TT
1 TTTTGTGTTTGTTTATT
*
107771 TTTTGTTTTTGTTTATT
1 TTTTGTGTTTGTTTATT
107788 TT
1 TT
107790 GTTTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83
Consensus pattern (17 bp):
TTTTGTGTTTGTTTATT
Found at i:107789 original size:9 final size:8
Alignment explanation
Indices: 107762--107826 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
107752 CTATTTTGTG
107762 TTTGTTTT
1 TTTGTTTT
107770 TTT-TTGTT
1 TTTGTT-TT
107778 TTTGTTTAT
1 TTTGTTT-T
107787 TTTG--TT
1 TTTGTTTT
107793 TTT-TTTT
1 TTTGTTTT
*
107800 ATTGTTTT
1 TTTGTTTT
*
107808 CTTT-TTCT
1 -TTTGTTTT
107816 TTTGTTTT
1 TTTGTTTT
107824 TTT
1 TTT
107827 ACACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
6 4 0.09
7 10 0.22
8 22 0.49
9 9 0.20
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.85
Consensus pattern (8 bp):
TTTGTTTT
Found at i:107792 original size:29 final size:29
Alignment explanation
Indices: 107760--107826 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
107750 TTCTATTTTG
*
107760 TGTTTGTTTTTTTTTGTTTT-TGTTTATTT
1 TGTTT-TTTTTTATTGTTTTCTGTTTATTT
* *
107789 TGTTTTTTTTTATTGTTTTCTTTTTCTTT
1 TGTTTTTTTTTATTGTTTTCTGTTTATTT
107818 TGTTTTTTT
1 TGTTTTTTT
107827 ACACATAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 13 0.38
29 21 0.62
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.84
Consensus pattern (29 bp):
TGTTTTTTTTTATTGTTTTCTGTTTATTT
Found at i:107795 original size:16 final size:15
Alignment explanation
Indices: 107753--107826 Score: 82
Period size: 15 Copynumber: 4.9 Consensus size: 15
107743 CCTTTTCTTC
107753 TATTTTGTGTTTGTTTT
1 TATTTTGT-TTT-TTTT
*
107770 T-TTTTGTTTTTGTT
1 TATTTTGTTTTTTTT
107784 TATTTTGTTTTTTTT
1 TATTTTGTTTTTTTT
107799 TA--TTGTTTTCTTTT
1 TATTTTGTTTT-TTTT
*
107813 TCTTTTGTTTTTTT
1 TATTTTGTTTTTTT
107827 ACACATAGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
13 7 0.14
14 9 0.18
15 20 0.40
16 13 0.26
17 1 0.02
ACGTcount: A:0.04, C:0.03, G:0.11, T:0.82
Consensus pattern (15 bp):
TATTTTGTTTTTTTT
Found at i:109269 original size:19 final size:18
Alignment explanation
Indices: 109211--109269 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 18
109201 TACAAGCCAA
*
109211 TGTATCGATACAATTTTTTTG
1 TGTATCGATACAA---TTTGG
*
109232 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
109251 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
109270 CTACTGCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.03
19 19 0.58
21 12 0.36
22 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:109971 original size:21 final size:21
Alignment explanation
Indices: 109928--109973 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
109918 TAATTCACGC
* *
109928 ATTCTCCCCCGTTTATTAATA
1 ATTCTCCCCCGTTAATCAATA
109949 ATTCTCCCCC-TTAATCAAGTA
1 ATTCTCCCCCGTTAATCAA-TA
109970 ATTC
1 ATTC
109974 ATATCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.39
Consensus pattern (21 bp):
ATTCTCCCCCGTTAATCAATA
Found at i:110819 original size:13 final size:13
Alignment explanation
Indices: 110801--110830 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
110791 ATAATCACCC
110801 TGTATCGATACAA
1 TGTATCGATACAA
110814 TGTATCGATACAA
1 TGTATCGATACAA
110827 TGTA
1 TGTA
110831 AAATGTATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:114768 original size:21 final size:21
Alignment explanation
Indices: 114739--114783 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
114729 AAGTTTTTAT
*
114739 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
114759 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
114781 TTT
1 TTT
114784 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:117023 original size:19 final size:18
Alignment explanation
Indices: 116965--117023 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 18
116955 TACAAGCCAA
*
116965 TGTATCGATACAATTTTTTTG
1 TGTATCGATACAA---TTTGG
*
116986 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
117005 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
117024 CTATTGCTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.03
19 19 0.58
21 12 0.36
22 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:117935 original size:50 final size:51
Alignment explanation
Indices: 117854--117992 Score: 181
Period size: 50 Copynumber: 2.7 Consensus size: 51
117844 TTTCACAATT
** *
117854 TGTATCGATACATCCTTCATTGTATCGATACATTCTGGGTTTT-ATCAAGA
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCAAGA
* * * *
117904 TGTATCGATACATTTTTCATTATATCAATACATTTTGGGTTTTAACCCAGA
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCAAGA
* * *
117955 TGTATCGACACATTTTTCAATGTATCGATATATTCTGG
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGG
117993 CATTTTTGAC
Statistics
Matches: 75, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 38 0.51
51 37 0.49
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (51 bp):
TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTAACCAAGA
Found at i:119876 original size:20 final size:21
Alignment explanation
Indices: 119851--119904 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
119841 ATTACAAGCA
*
119851 ATGTATCGATACAATT-CATC
1 ATGTATCGATACAATTGCACC
*
119871 ATGTATCGATAC-ATTGTACC
1 ATGTATCGATACAATTGCACC
119891 ATGTATCGATACAA
1 ATGTATCGATACAA
119905 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 26 0.87
21 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACAATTGCACC
Found at i:119977 original size:19 final size:19
Alignment explanation
Indices: 119933--119988 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
119923 CTGCCAATCT
**
119933 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
*
119953 CATGTATCTATACAATGAA
1 CATGTATCGATACAATGAA
119972 CATGTATCGATACAATG
1 CATGTATCGATACAATG
119989 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:119991 original size:13 final size:13
Alignment explanation
Indices: 119973--119999 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
119963 TACAATGAAC
119973 ATGTATCGATACA
1 ATGTATCGATACA
119986 ATGTATCGATACA
1 ATGTATCGATACA
119999 A
1 A
120000 AGCATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:123614 original size:20 final size:20
Alignment explanation
Indices: 123589--123626 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
123579 CTGCCAAGGA
*
123589 AATGTATTGATACATTATTC
1 AATGTATCGATACATTATTC
123609 AATGTATCGATACATTAT
1 AATGTATCGATACATTAT
123627 ATTGATACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:123635 original size:33 final size:33
Alignment explanation
Indices: 123593--123656 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
123583 CAAGGAAATG
123593 TATTGATACATT-ATTCAATGTATCGATACATTA
1 TATTGATACATTGA-TCAATGTATCGATACATTA
**
123626 TATTGATACATTGATCTTTGTATCGATACAT
1 TATTGATACATTGATCAATGTATCGATACAT
123657 CTGGGAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (33 bp):
TATTGATACATTGATCAATGTATCGATACATTA
Found at i:128539 original size:10 final size:10
Alignment explanation
Indices: 128524--128564 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
128514 TTGGGAAGTA
*
128524 ATTTTTTGAG
1 ATTTTTTGGG
128534 A-TTTTTGGG
1 ATTTTTTGGG
128543 ATATTTTTGGG
1 AT-TTTTTGGG
128554 ATTTTTTGGG
1 ATTTTTTGGG
128564 A
1 A
128565 AGCCATACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 8 0.29
10 10 0.36
11 10 0.36
ACGTcount: A:0.17, C:0.00, G:0.27, T:0.56
Consensus pattern (10 bp):
ATTTTTTGGG
Found at i:128548 original size:11 final size:11
Alignment explanation
Indices: 128534--128564 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
128524 ATTTTTTGAG
128534 ATTTTTGGGAT
1 ATTTTTGGGAT
128545 ATTTTTGGGAT
1 ATTTTTGGGAT
128556 -TTTTTGGGA
1 ATTTTTGGGA
128565 AGCCATACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.55
Consensus pattern (11 bp):
ATTTTTGGGAT
Found at i:128550 original size:21 final size:21
Alignment explanation
Indices: 128526--128564 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
128516 GGGAAGTAAT
128526 TTTTTGAGA-TTTTTGGGATA
1 TTTTTGAGATTTTTTGGGATA
*
128546 TTTTTGGGATTTTTTGGGA
1 TTTTTGAGATTTTTTGGGA
128565 AGCCATACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.56
Consensus pattern (21 bp):
TTTTTGAGATTTTTTGGGATA
Found at i:128999 original size:79 final size:80
Alignment explanation
Indices: 128865--129341 Score: 476
Period size: 79 Copynumber: 6.0 Consensus size: 80
128855 TCATTCATGT
* * * *
128865 TTTTA-TTTCTAAAATACCAATTTTCCACCATCGGGGATACTCGAACCCCATTATTTTCGAAGGG
1 TTTTATTTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGTTATTTTCGAAGGG
* *
128929 ATACTCTAACCTCGA
66 ATACTCCAACCCCGA
*
128944 TTATATTTTC-AAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGTTATTTTCG-AGGG
1 TTTTATTTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGTTATTTTCGAAGGG
*
129007 CATGCTCCAACCCCGA
66 -ATACTCCAACCCCGA
* * * * *
129023 TTTTA-TTTCTAAAACACCAATTTTTCACCATCGGGGATACTCCAACCCCATTGTTTTCGAGGGG
1 TTTTATTTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGTTATTTTCGAAGGG
129087 ATACTCCAACCCCGA
66 ATACTCCAACCCCGA
* * ** * * * **
129102 TTTTA-TTTCCAAAACACTAATTTTTTACAAT-AGAGGATACTCTAACCCCGTTA-TTTCTTAGG
1 TTTTATTTTCTAAAACACCAATTTTCCACCATCGGA-GATACTCCAACCCCGTTATTTTCGAAGG
*
129164 AGAAACTCCAACCCC-A
65 -GATACTCCAACCCCGA
* * * * * * *
129180 GCTTTA-TTTCTAAAACATCGATTTTCCACAATCGGAGATATTCCAACCCTGTTA-TTTCTGAGG
1 -TTTTATTTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGTTATTTTC-GAAG
*
129243 GGATACTCCAACCCCGG
64 GGATACTCCAACCCCGA
*** * * *
129260 TTTTATTTT-TAAAACATTGATTTTTCACCATC-GTGATACTCCAACCCTGTTATTTTCG-AGGG
1 TTTTATTTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGTTATTTTCGAAGGG
129322 TATACTCCAACCCCGA
66 -ATACTCCAACCCCGA
129338 TTTT
1 TTTT
129342 GTTTCCAAAA
Statistics
Matches: 333, Mismatches: 52, Indels: 27
0.81 0.13 0.07
Matches are distributed among these distances:
77 3 0.01
78 53 0.16
79 263 0.79
80 14 0.04
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (80 bp):
TTTTATTTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGTTATTTTCGAAGGG
ATACTCCAACCCCGA
Found at i:129153 original size:158 final size:155
Alignment explanation
Indices: 128865--129394 Score: 580
Period size: 158 Copynumber: 3.4 Consensus size: 155
128855 TCATTCATGT
* * *
128865 TTTTATTTCTAAAATACCAATTTTCCACCATCGGGGATACTCGAACCCCATTATTTTCGAAGGGA
1 TTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACCCCATT-TTTTCGAGGGGA
* * * * *
128930 TACTCTAACCTCGATTATATTTTCAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCCGT
65 TACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTTCACCATCGG-GATACTCCAACCCCGT
*
128995 TATTTTCGAGGGCATGCTCCAACCCCGA
129 TATTTTCGAGGG-ATACTCCAACCCCGA
*
129023 TTTTATTTCTAAAACACCAATTTTTCACCATCGGGGATACTCCAACCCCATTGTTTTCGAGGGGA
1 TTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACCCCATT-TTTTCGAGGGGA
* * * * *
129088 TACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTTTACAATAGAGGATACTCTAACCCCGT
65 TACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTTCACCATCG-GGATACTCCAACCCCGT
* *
129153 TA-TTTCTTAGGAGAAACTCCAACCCC-A
129 TATTTTC-GAGG-GATACTCCAACCCCGA
* * * * * * ** *
129180 GCTTTATTTCTAAAACATCGATTTTCCACAATCGGAGATATTCCAACCCTGTTATTTCTGAGGGG
1 -TTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACCCCATTTTTTC-GAGGGG
* * * * * *
129245 ATACTCCAACCCCGGTTTTATTTTTAAAACATTGATTTTTCACCATCGTGATACTCCAACCCTGT
64 ATACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTTCACCATCGGGATACTCCAACCCCGT
129310 TATTTTCGAGGGTATACTCCAACCCCGA
129 TATTTTCGAGGG-ATACTCCAACCCCGA
* * * * * * * *
129338 TTTTGTTTCCAAAATATCGACTTTT-CACCATCGAGGATTCTCCAACCCTATTTTTTC
1 TTTTATTTCTAAAACA-CCAATTTTCCACCATCGGGGATACTCCAACCCCATTTTTTC
129395 TCCAAAATAT
Statistics
Matches: 307, Mismatches: 56, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 77 0.25
158 227 0.74
159 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (155 bp):
TTTTATTTCTAAAACACCAATTTTCCACCATCGGGGATACTCCAACCCCATTTTTTCGAGGGGAT
ACTCCAACCCCGATTTTATTTTCAAAACACTAATTTTTCACCATCGGGATACTCCAACCCCGTTA
TTTTCGAGGGATACTCCAACCCCGA
Found at i:141698 original size:1 final size:1
Alignment explanation
Indices: 141687--141774 Score: 50
Period size: 1 Copynumber: 88.0 Consensus size: 1
141677 TCCATTTTCT
* ** * * * * ** * *
141687 AAAAAACAAAAAAAATTAAAAACAAAAACAAAACAAAAACAAAATTAAAAAAAAAAGAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
141752 GAAAAAAAAAGAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAA
141775 CAAGCTTAAG
Statistics
Matches: 63, Mismatches: 24, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.84, C:0.06, G:0.06, T:0.05
Consensus pattern (1 bp):
A
Found at i:141749 original size:19 final size:17
Alignment explanation
Indices: 141735--141774 Score: 57
Period size: 15 Copynumber: 2.4 Consensus size: 17
141725 ACAAAATTAA
141735 AAAAAAAAGAGAAAAAAG
1 AAAAAAAA-AGAAAAAAG
141753 AAAAAAAAAG--AAAAG
1 AAAAAAAAAGAAAAAAG
141768 AAAAAAA
1 AAAAAAA
141775 CAAGCTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 12 0.55
17 2 0.09
18 8 0.36
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAAG
Found at i:141751 original size:15 final size:16
Alignment explanation
Indices: 141687--141774 Score: 68
Period size: 17 Copynumber: 5.1 Consensus size: 16
141677 TCCATTTTCT
* *
141687 AAAAAACAAAAAAAAT
1 AAAAAAGAAAAAAAAA
* *
141703 TAAAAACAAAAACAAAA
1 AAAAAAGAAAAA-AAAA
* *
141720 CAAAAACAAAATTAAAAA
1 AAAAAAGAAAA--AAAAA
141738 AAAAAGAGAAAAAAGAAA
1 AAAAA-AGAAAAAA-AAA
141756 AAAAAAGAAAAGAAAAA
1 AAAAAAGAAAA-AAAAA
141773 AA
1 AA
141775 CAAGCTTAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
16 11 0.18
17 26 0.43
18 18 0.30
19 6 0.10
ACGTcount: A:0.84, C:0.06, G:0.06, T:0.05
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAA
Found at i:142796 original size:61 final size:61
Alignment explanation
Indices: 142695--143034 Score: 421
Period size: 61 Copynumber: 5.6 Consensus size: 61
142685 AACCTTTTAT
* *
142695 CCTTTCAGTCCTCAAAGTGCAGGACGTCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *** * * * *
142756 CCTTTTAGTCCTCGAAGAGCAGGACATTTTTTTCTATTAAAGCCCACATAGGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * *
142817 CATTTTAGTCCTCAAAAAGCAAGATGCCTTTTCCTTTTAAAGCGCACACAAGTTGATGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
142878 CCTTTTAGTCCTCAAAGAGTAGGACGCTTTTTCCTTTTAAAGCCTACACAAATTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
142939 CCTTTCAGTCTTTAAAGAGCAGGATGACTTTTCC-TTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
142999 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTT
143035 GTGGCACCTT
Statistics
Matches: 233, Mismatches: 45, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
60 55 0.24
61 178 0.76
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (61 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:143052 original size:42 final size:42
Alignment explanation
Indices: 142993--143076 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
142983 ACACAAGTTG
*
142993 GTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTT
1 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTT
143035 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTT
1 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTT
143077 TTAAAGCTCG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (42 bp):
GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTT
Found at i:143117 original size:103 final size:102
Alignment explanation
Indices: 142933--143134 Score: 296
Period size: 103 Copynumber: 2.0 Consensus size: 102
142923 ACACAAATTG
* * * *
142933 GTGGCACCTTTCAGTCTTTAAAGAGCAGGATGACTTTTCCTTTAAAGCCCACACAAGTTGGTGGC
1 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGACTTTTCCTTTAAAGCCCACACAAGTCGGTGGC
* *
142998 ACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTT
66 ACCTTTCAGTCCTCAAAGAGCAGAACGCCTTTTCCTT
* * **
143035 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCTCGTACAAGTCGGTGG
1 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGACTTTTCC-TTTAAAGCCCACACAAGTCGGTGG
*
143100 CACCTTTCAGTCCTCAAAGAGTAGAACGCCTTTTC
65 CACCTTTCAGTCCTCAAAGAGCAGAACGCCTTTTC
143135 TTTTTAAAGC
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 36 0.41
103 52 0.59
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (102 bp):
GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGACTTTTCCTTTAAAGCCCACACAAGTCGGTGGC
ACCTTTCAGTCCTCAAAGAGCAGAACGCCTTTTCCTT
Found at i:143130 original size:61 final size:61
Alignment explanation
Indices: 143035--143227 Score: 212
Period size: 61 Copynumber: 3.2 Consensus size: 61
143025 CCTTTTCCTT
* * **
143035 GTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCTCGTACAAGTCG
1 GTGGCACCTTTCAGTCCTCAAAGAGCAGAACGCCTTTTCCTTTTAAAGCCCACACAAGTCG
* *
143096 GTGGCACCTTTCAGTCCTCAAAGAGTAGAACGCCTTTTCTTTTTAAAGCCCACACAAGTCG
1 GTGGCACCTTTCAGTCCTCAAAGAGCAGAACGCCTTTTCCTTTTAAAGCCCACACAAGTCG
* * * * * * * *
143157 GTGACACCTTTTTA-TCCTTAAAAAGTAGGA--CATATTTCCTTTTTAAAGCCCACACAAGTGG
1 GTGGCACC-TTTCAGTCCTCAAAGAGCAGAACGCCT-TTTCC-TTTTAAAGCCCACACAAGTCG
143218 GTGGCACCTT
1 GTGGCACCTT
143228 CTAGTCCCTA
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
59 2 0.02
60 6 0.05
61 102 0.89
62 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (61 bp):
GTGGCACCTTTCAGTCCTCAAAGAGCAGAACGCCTTTTCCTTTTAAAGCCCACACAAGTCG
Done.