Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold861
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 143541
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:993 original size:10 final size:10
Alignment explanation
Indices: 978--1004 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
968 ATGTATCAAG
978 CAAAAACAAA
1 CAAAAACAAA
988 CAAAAACAAA
1 CAAAAACAAA
998 CAAAAAC
1 CAAAAAC
1005 TTAGTTAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:5207 original size:52 final size:52
Alignment explanation
Indices: 5137--5257 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
5127 GAAAATTTAT
*
5137 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
5189 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
5241 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
5258 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:5270 original size:52 final size:51
Alignment explanation
Indices: 5137--5277 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
5127 GAAAATTTAT
5137 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
5189 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
5241 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
5278 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:5284 original size:13 final size:13
Alignment explanation
Indices: 5266--5290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5256 CAAAGATCAG
5266 TGTATCGATACAA
1 TGTATCGATACAA
5279 TGTATCGATACA
1 TGTATCGATACA
5291 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:5373 original size:13 final size:13
Alignment explanation
Indices: 5355--5379 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5345 CAAAAAAATA
5355 TGTATCGATACAT
1 TGTATCGATACAT
5368 TGTATCGATACA
1 TGTATCGATACA
5380 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5375 original size:33 final size:33
Alignment explanation
Indices: 5333--5399 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
5323 AGTAGCTTAA
5333 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
5366 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
5399 A
1 A
5400 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:7032 original size:14 final size:14
Alignment explanation
Indices: 7013--7044 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
7003 TTTTATTTTT
7013 AAGCACTAAAGATG
1 AAGCACTAAAGATG
7027 AAGCACTAAAGATG
1 AAGCACTAAAGATG
7041 AAGC
1 AAGC
7045 TTTAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.16, G:0.22, T:0.12
Consensus pattern (14 bp):
AAGCACTAAAGATG
Found at i:9577 original size:8 final size:8
Alignment explanation
Indices: 9564--9589 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
9554 ATTTGATTAA
9564 ATTTTGTG
1 ATTTTGTG
9572 ATTTTGTG
1 ATTTTGTG
9580 ATTTTGTG
1 ATTTTGTG
9588 AT
1 AT
9590 GAATGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:12247 original size:20 final size:20
Alignment explanation
Indices: 12214--12254 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
12204 AAAGGTCAAA
*
12214 ACCTTGAAAAGTATCGATAC
1 ACCTTCAAAAGTATCGATAC
*
12234 ACCTTCAAATGTATCGATAC
1 ACCTTCAAAAGTATCGATAC
12254 A
1 A
12255 GATTGCACAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (20 bp):
ACCTTCAAAAGTATCGATAC
Found at i:12301 original size:20 final size:21
Alignment explanation
Indices: 12276--12328 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
12266 GTCGATACAT
**
12276 TGTATCGATACATG-ACCAAA
1 TGTATCGATACATGTAAAAAA
*
12296 TGTATCGATACTTGTAAAAAA
1 TGTATCGATACATGTAAAAAA
12317 TGTATCGATACA
1 TGTATCGATACA
12329 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAAAA
Found at i:12406 original size:13 final size:13
Alignment explanation
Indices: 12388--12413 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12378 TACACACAAG
12388 ATGTATCGATACA
1 ATGTATCGATACA
12401 ATGTATCGATACA
1 ATGTATCGATACA
12414 TCCCAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:12430 original size:33 final size:32
Alignment explanation
Indices: 12370--12433 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
12360 CTTAACTGTT
*
12370 TGTATCGATACACACAAGATGTATCGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
12402 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCGATACA
12434 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:14180 original size:13 final size:13
Alignment explanation
Indices: 14164--14193 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
14154 ATACATTGTT
14164 CATTGTATCGATA
1 CATTGTATCGATA
14177 CATTGTATCGATA
1 CATTGTATCGATA
14190 CATT
1 CATT
14194 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:16677 original size:79 final size:79
Alignment explanation
Indices: 16542--16764 Score: 277
Period size: 79 Copynumber: 2.8 Consensus size: 79
16532 TTTTCATCTC
* * * * * *
16542 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCTAAT
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAAC
* *
16607 CTCGTTATTTTCGA
66 CTCGTCATTTTCAA
* * * *
16621 GGGGATAC-CCTAACCCCGATTTTATTCCCAAAACACCAATTTTTAACAATTTGGGATACTCCAA
1 GGGGATACTCC-AACCCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAA
*
16685 CCTTGTCATTTTCAA
65 CCTCGTCATTTTCAA
* * * *
16700 GAGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTCCACAATTGGGGATACTGCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAAC
16765 TCCGATTTTA
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 2 0.02
79 117 0.97
80 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTTCACAATTGGGGATACTCCAAC
CTCGTCATTTTCAA
Found at i:16774 original size:51 final size:51
Alignment explanation
Indices: 16702--16819 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
16692 ATTTTCAAGA
* *
16702 GGATACTCCAACCCCGGTTTTA-TTTCTAAAACACCAATTTTCCACAATTGG
1 GGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTCCACAATCGG
* * * *
16753 GGATACTGCAACTCCGATTTTATTTTCAAAACATCAATTTTTCACAATCGG
1 GGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCACAATCGG
16804 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
16820 TTATTTCATC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 54 0.93
52 4 0.07
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.31
Consensus pattern (51 bp):
GGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCACAATCGG
Found at i:16835 original size:28 final size:27
Alignment explanation
Indices: 16803--16875 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 27
16793 TTCACAATCG
16803 GGGATACTCCAACCCCGTTA-TTTCATCA
1 GGGATACTCCAACCCCGTTATTTTCA--A
*
16831 GGGATACTCCAACCCCATTATTTTCAA
1 GGGATACTCCAACCCCGTTATTTTCAA
*
16858 GGAGATACTCTAACCCCG
1 GG-GATACTCCAACCCCG
16876 GCTTTATTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
27 3 0.08
28 32 0.80
29 5 0.12
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (27 bp):
GGGATACTCCAACCCCGTTATTTTCAA
Found at i:16835 original size:158 final size:158
Alignment explanation
Indices: 16673--17004 Score: 395
Period size: 158 Copynumber: 2.1 Consensus size: 158
16663 TTAACAATTT
*** * *
16673 GGGATACTCCAACCTTGTCATTTTCAA-GAGGATACTCCAACCCCGGTTTTATTTCTAAAACACC
1 GGGATACTCCAACCCCATCATTTTCAAGGA-GATACTCCAACCCCGGCTTTATTTCCAAAACACC
* * ** *
16737 AATTT-TCCACAATTGGGGATACTGCAACTCCGATTTTATTT-TCAAAACATCAATTTTTCACAA
65 AATTTCT-CACAATCGGGGATACTGCAACCCCGACCTTATTTCT-AAAACATCAACTTTTCACAA
* *
16800 TCGGGGATACTCCAACCCCGTTATTTCATC-A-
128 TCAGGGATACTCCAACCCCATTATTT--TCGAG
* * * ***
16831 GGGATACTCCAACCCCATTATTTTCAAGGAGATACTCTAACCCCGGCTTTATTTCCAAAATATTG
1 GGGATACTCCAACCCCATCATTTTCAAGGAGATACTCCAACCCCGGCTTTATTTCCAAAACACCA
* * *
16896 ATTTCTCACAATCGGGGATACTGCAACCCCGGCCTTATTTCTAAAGCATCGACTTTTCACAATCA
66 ATTTCTCACAATCGGGGATACTGCAACCCCGACCTTATTTCTAAAACATCAACTTTTCACAATCA
16961 GGGATACTCCAACCCCATTATTTTCGAG
131 GGGATACTCCAACCCCATTATTTTCGAG
16989 GGGATACTCCAACCCC
1 GGGATACTCCAACCCC
17005 GATTTTATTT
Statistics
Matches: 148, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
156 2 0.01
157 1 0.01
158 141 0.95
159 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (158 bp):
GGGATACTCCAACCCCATCATTTTCAAGGAGATACTCCAACCCCGGCTTTATTTCCAAAACACCA
ATTTCTCACAATCGGGGATACTGCAACCCCGACCTTATTTCTAAAACATCAACTTTTCACAATCA
GGGATACTCCAACCCCATTATTTTCGAG
Found at i:16924 original size:51 final size:50
Alignment explanation
Indices: 16861--16976 Score: 135
Period size: 51 Copynumber: 2.3 Consensus size: 50
16851 TTTTCAAGGA
* * * *
16861 GATACTCTAACCCCGGCTTTATTTCCAAAATATTGA-TTTCTCACAATCGGG
1 GATACTC-AACCCCGGCCTTATTTCCAAAACATCGACTTT-TCACAATCAGG
* *
16912 GATACTGCAACCCCGGCCTTATTTCTAAAGCATCGACTTTTCACAATCAGG
1 GATACT-CAACCCCGGCCTTATTTCCAAAACATCGACTTTTCACAATCAGG
16963 GATACTCCAACCCC
1 GATACT-CAACCCC
16977 ATTATTTTCG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 52 0.93
52 4 0.07
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (50 bp):
GATACTCAACCCCGGCCTTATTTCCAAAACATCGACTTTTCACAATCAGG
Found at i:16992 original size:79 final size:78
Alignment explanation
Indices: 16909--17082 Score: 199
Period size: 78 Copynumber: 2.2 Consensus size: 78
16899 TCTCACAATC
* * * *
16909 GGGGATACTGCAACCCCGGCCTTATTTCTAAAGCA-TCGACTTTTC-ACAATCAGGGATACTCCA
1 GGGGATACTCCAACCCCGACCTTATTTCTAAA--ATTC-AATTTTCTACAATCAGGCATACTCCA
*
16972 ACCCCATTATTTTCGA
63 ACCCCATAATTTTCGA
** * *
16988 GGGGATACTCCAACCCCGATTTTATTTTTAAAATTCAATTTTCTATAATCAGGCATACTCCAACC
1 GGGGATACTCCAACCCCGACCTTATTTCTAAAATTCAATTTTCTACAATCAGGCATACTCCAACC
** *
17053 CTGTAATTTTTGA
66 CCATAATTTTCGA
17066 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
17083 AATTTTATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
77 7 0.09
78 47 0.58
79 27 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGACCTTATTTCTAAAATTCAATTTTCTACAATCAGGCATACTCCAACC
CCATAATTTTCGA
Found at i:17132 original size:51 final size:51
Alignment explanation
Indices: 17068--17179 Score: 170
Period size: 51 Copynumber: 2.2 Consensus size: 51
17058 ATTTTTGAGG
* *
17068 GGATACTCCAACCCCAATTTTATTTTCAAAACACCGATTTTCCATAATCGA
1 GGATACTCTAACCCCAATTTTATTTCCAAAACACCGATTTTCCATAATCGA
* * * *
17119 TGATACTCTAACCCCGATTTTATTTCCAGAACACCGATTTTCCATAATCGG
1 GGATACTCTAACCCCAATTTTATTTCCAAAACACCGATTTTCCATAATCGA
17170 GGATACTCTA
1 GGATACTCTA
17180 GCCTCGTTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (51 bp):
GGATACTCTAACCCCAATTTTATTTCCAAAACACCGATTTTCCATAATCGA
Found at i:19182 original size:27 final size:27
Alignment explanation
Indices: 19152--19206 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
19142 ATGTCGTCCG
19152 TGTATTGTCAAATTGTTATGCTTGCCA
1 TGTATTGTCAAATTGTTATGCTTGCCA
19179 TGTATTGTCAAATTGTTATGCTTGCCA
1 TGTATTGTCAAATTGTTATGCTTGCCA
19206 T
1 T
19207 TAGGCATCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (27 bp):
TGTATTGTCAAATTGTTATGCTTGCCA
Found at i:20993 original size:28 final size:28
Alignment explanation
Indices: 20956--21025 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
20946 ACAATCGGGA
20956 ATACTCCAACCCCGTTA-TTTCATCAGG-G
1 ATACTCCAACCCCGTTATTTTCA--AGGAG
*
20984 ATACTCCAACCCCATTATTTTCAAGGAG
1 ATACTCCAACCCCGTTATTTTCAAGGAG
*
21012 ATACTCTAACCCCG
1 ATACTCCAACCCCG
21026 GCTTTATTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 3 0.08
28 29 0.78
29 5 0.14
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (28 bp):
ATACTCCAACCCCGTTATTTTCAAGGAG
Found at i:21061 original size:107 final size:107
Alignment explanation
Indices: 20875--21076 Score: 325
Period size: 107 Copynumber: 1.9 Consensus size: 107
20865 GAGGTAAACC
* **
20875 GGATACTCCAACCCCGTTATTTTTGAGGAGATACTTCAACCCCGGCTTTATTTCCAAAATATTAA
1 GGATACTCCAACCCCATTATTTTCAAGGAGATACTTCAACCCCGGCTTTATTTCCAAAATATTAA
*
20940 TTTCTGACAATCGGGAATACTCCAACCCCGTTATTTCATCAG
66 TTTCTCACAATCGGGAATACTCCAACCCCGTTATTTCATCAG
*
20982 GGATACTCCAACCCCATTATTTTCAAGGAGATAC-TCTAACCCCGGCTTTATTTCCAAAATATTG
1 GGATACTCCAACCCCATTATTTTCAAGGAGATACTTC-AACCCCGGCTTTATTTCCAAAATATTA
* *
21046 ATTTCTCACAATCGGGGATACTGCAACCCCG
65 ATTTCTCACAATCGGGAATACTCCAACCCCG
21077 GCCTTATTTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
106 2 0.02
107 85 0.98
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (107 bp):
GGATACTCCAACCCCATTATTTTCAAGGAGATACTTCAACCCCGGCTTTATTTCCAAAATATTAA
TTTCTCACAATCGGGAATACTCCAACCCCGTTATTTCATCAG
Found at i:21074 original size:51 final size:50
Alignment explanation
Indices: 21011--21127 Score: 137
Period size: 51 Copynumber: 2.3 Consensus size: 50
21001 TTTTCAAGGA
* * * *
21011 GATACTCTAACCCCGGCTTTATTTCCAAAATATTGA-TTTCTCACAATCGGG
1 GATACTC-AACCCCGGCCTTATTTCCAAAACATCGACTTT-TCACAATCAGG
* *
21062 GATACTGCAACCCCGGCCTTATTTCTAAAGCATCGACTTTTCACAATCAGG
1 GATACT-CAACCCCGGCCTTATTTCCAAAACATCGACTTTTCACAATCAGG
21113 GATACTCCAACCCCG
1 GATACT-CAACCCCG
21128 TTATTTTCGA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 53 0.93
52 4 0.07
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (50 bp):
GATACTCAACCCCGGCCTTATTTCCAAAACATCGACTTTTCACAATCAGG
Found at i:21142 original size:79 final size:78
Alignment explanation
Indices: 21059--21232 Score: 217
Period size: 78 Copynumber: 2.2 Consensus size: 78
21049 TCTCACAATC
* * *
21059 GGGGATACTGCAACCCCGGCCTTATTTCTAAAGCA-TCGACTTTTC-ACAATCAGGGATACTCCA
1 GGGGATACTCCAACCCCGACCTTATTTCTAAA--ATTCGA-TTTTCTACAATCAGGCATACTCCA
*
21122 ACCCCGTTATTTTCGA
63 ACCCCGTAATTTTCGA
** * *
21138 GGGGATACTCCAACCCCGATTTTATTTTTAAAATTCGATTTTCTATAATCAGGCATACTCCAACC
1 GGGGATACTCCAACCCCGACCTTATTTCTAAAATTCGATTTTCTACAATCAGGCATACTCCAACC
* *
21203 CTGTAATTTTTGA
66 CCGTAATTTTCGA
21216 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
21233 AATTTTATTT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
77 6 0.07
78 50 0.60
79 27 0.33
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGACCTTATTTCTAAAATTCGATTTTCTACAATCAGGCATACTCCAACC
CCGTAATTTTCGA
Found at i:21212 original size:78 final size:79
Alignment explanation
Indices: 21106--21284 Score: 236
Period size: 78 Copynumber: 2.3 Consensus size: 79
21096 GACTTTTCAC
* * * *
21106 AATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTTAAAA
1 AATCAGGCATACTCCAACCCCGTAATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTCAAAA
** *
21171 -TTCGATTTTCTAT
66 CACCGATTTTCCAT
* *
21184 AATCAGGCATACTCCAACCCTGTAATTTTTGAGGGGATACTCCAACCCCAATTTTATTTTCAAAA
1 AATCAGGCATACTCCAACCCCGTAATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTCAAAA
21249 CACCGATTTTCCAT
66 CACCGATTTTCCAT
* *
21263 AATCGATG-ATACTCTAACCCCG
1 AATC-AGGCATACTCCAACCCCG
21285 ATTTTATTTC
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
78 59 0.68
79 26 0.30
80 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (79 bp):
AATCAGGCATACTCCAACCCCGTAATTTTCGAGGGGATACTCCAACCCCAATTTTATTTTCAAAA
CACCGATTTTCCAT
Found at i:21282 original size:51 final size:51
Alignment explanation
Indices: 21218--21329 Score: 170
Period size: 51 Copynumber: 2.2 Consensus size: 51
21208 ATTTTTGAGG
* *
21218 GGATACTCCAACCCCAATTTTATTTTCAAAACACCGATTTTCCATAATCGA
1 GGATACTCTAACCCCAATTTTATTTCCAAAACACCGATTTTCCATAATCGA
* * * *
21269 TGATACTCTAACCCCGATTTTATTTCCAGAACACCGATTTTCCATAATCGG
1 GGATACTCTAACCCCAATTTTATTTCCAAAACACCGATTTTCCATAATCGA
21320 GGATACTCTA
1 GGATACTCTA
21330 GCCTCGTTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (51 bp):
GGATACTCTAACCCCAATTTTATTTCCAAAACACCGATTTTCCATAATCGA
Found at i:23253 original size:26 final size:25
Alignment explanation
Indices: 23175--23254 Score: 72
Period size: 26 Copynumber: 3.2 Consensus size: 25
23165 TATATTCTAT
* * * *
23175 TTTATTTATTTAAATATTTTAACTAA
1 TTTA-TTATATAAATATATAAAATAA
* *
23201 -TTATTATATAAATATATAAATTTA
1 TTTATTATATAAATATATAAAATAA
*
23225 TTTATTATATTAAATGTATAAAATAA
1 TTTATTATA-TAAATATATAAAATAA
23251 TTTA
1 TTTA
23255 AAACTTTTAC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
24 16 0.36
25 11 0.25
26 17 0.39
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (25 bp):
TTTATTATATAAATATATAAAATAA
Found at i:23288 original size:18 final size:19
Alignment explanation
Indices: 23252--23289 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
23242 ATAAAATAAT
*
23252 TTAAAACTTTTACATAAAA
1 TTAAAAATTTTACATAAAA
23271 TTAAAAATTTTA-ATAAAA
1 TTAAAAATTTTACATAAAA
23289 T
1 T
23290 AATTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAAAATTTTACATAAAA
Found at i:23537 original size:18 final size:18
Alignment explanation
Indices: 23514--23550 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23504 GTCAAAAAAT
23514 TAAGTA-AAATATTAATAA
1 TAAGTATAAA-ATTAATAA
23532 TAAGTATAAAATTAATAA
1 TAAGTATAAAATTAATAA
23550 T
1 T
23551 TTTTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (18 bp):
TAAGTATAAAATTAATAA
Found at i:25999 original size:13 final size:14
Alignment explanation
Indices: 25981--26019 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
25971 TTTTATTTTT
*
25981 AAAATAAAGATT-A
1 AAAATAAAAATTAA
25994 AAAATAAAAATTAA
1 AAAATAAAAATTAA
26008 AAAATAAAAATT
1 AAAATAAAAATT
26020 CATGAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (14 bp):
AAAATAAAAATTAA
Found at i:26135 original size:5 final size:6
Alignment explanation
Indices: 26092--26134 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
26082 TGATTGAAAA
*
26092 AAATTT AAAATTT AAATTT AAATTT GAATTT -AATTT -AATTT AA
1 AAATTT -AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AA
26135 TAACTCGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
5 10 0.29
6 18 0.53
7 6 0.18
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (6 bp):
AAATTT
Found at i:26219 original size:48 final size:48
Alignment explanation
Indices: 26158--26265 Score: 109
Period size: 49 Copynumber: 2.2 Consensus size: 48
26148 TATTTAAAAA
* *
26158 ATAA-TAAATATTAA-AAAT-T-TTATTTATATTTTAATATTTATATATTTT
1 ATAATTAAA-ATTAACAAATATATTATTTA-A-TTAAATATATA-ATATTTT
26206 ATAATTAAAATTAACTAAATATATTATTTAATTAAATATATAATATTTT
1 ATAATTAAAATTAAC-AAATATATTATTTAATTAAATATATAATATTTT
26255 A-AATTTAAAAT
1 ATAA-TTAAAAT
26266 ATTATATTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
48 11 0.21
49 19 0.37
50 13 0.25
51 2 0.04
52 7 0.13
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (48 bp):
ATAATTAAAATTAACAAATATATTATTTAATTAAATATATAATATTTT
Found at i:26259 original size:21 final size:21
Alignment explanation
Indices: 26213--26274 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
26203 TTTATAATTA
* *
26213 AAATTAACTAAATATATTATT
1 AAATTAAATATATATATTATT
*
26234 TAATTAAATATATAATATT-TT
1 AAATTAAATATAT-ATATTATT
26255 AAATTTAAA-ATATTATATTA
1 AAA-TTAAATATA-TATATTA
26275 ATATTTTACT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
21 22 0.67
22 11 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
AAATTAAATATATATATTATT
Found at i:26303 original size:27 final size:24
Alignment explanation
Indices: 26235--26303 Score: 61
Period size: 27 Copynumber: 2.7 Consensus size: 24
26225 TATATTATTT
26235 AATTAAA--TATATAATATTTTAA
1 AATTAAATTTATATAATATTTTAA
*
26257 ATTTAAAATATTATATTAATATTTTACTTA
1 AATT-AAAT-TTATA-TAATATTTTA---A
26287 AATTAAATTTATATAAT
1 AATTAAATTTATATAAT
26304 TGGACAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
22 3 0.08
23 3 0.08
26 4 0.11
27 14 0.38
28 5 0.14
29 4 0.11
30 4 0.11
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (24 bp):
AATTAAATTTATATAATATTTTAA
Found at i:26957 original size:18 final size:16
Alignment explanation
Indices: 26925--26968 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
26915 AAGTATAAAA
26925 ATAAAATTTTAAATTT
1 ATAAAATTTTAAATTT
26941 ATAAATATTTATAAATTT
1 ATAAA-ATTT-TAAATTT
* *
26959 TTTAAATTTT
1 ATAAAATTTT
26969 TTACTAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 6 0.25
17 8 0.33
18 10 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATAAAATTTTAAATTT
Found at i:27347 original size:19 final size:19
Alignment explanation
Indices: 27296--27348 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
27286 TATTTTAATT
27296 ATATTTATATATATTATGTC
1 ATATTTA-ATATATTATGTC
* *
27316 ATATTT-ATGATATTATTTT
1 ATATTTAAT-ATATTATGTC
*
27335 TTATTTAATATATT
1 ATATTTAATATATT
27349 TATTAAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 2 0.07
19 18 0.64
20 8 0.29
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
ATATTTAATATATTATGTC
Found at i:27780 original size:2 final size:2
Alignment explanation
Indices: 27773--27812 Score: 71
Period size: 2 Copynumber: 19.5 Consensus size: 2
27763 AGTAAAAATC
27773 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
27813 TTTTAGCTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:28079 original size:16 final size:17
Alignment explanation
Indices: 28058--28089 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
28048 TTAATGTTCT
28058 TATTTTT-ATTTTTATG
1 TATTTTTAATTTTTATG
28074 TATTTTTAATTTTTAT
1 TATTTTTAATTTTTAT
28090 TTAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (17 bp):
TATTTTTAATTTTTATG
Found at i:28207 original size:16 final size:16
Alignment explanation
Indices: 28160--28210 Score: 50
Period size: 18 Copynumber: 3.0 Consensus size: 16
28150 TTTTAGTAAA
*
28160 TAAAAT-TTTTAAAATT
1 TAAAATATTATAAAA-T
28176 TAAAAATATTAAATAAAAT
1 T-AAAATATT--ATAAAAT
28195 TAAAATATTATAAAAT
1 TAAAATATTATAAAAT
28211 CATAAAAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
16 8 0.27
17 5 0.17
18 10 0.33
19 2 0.07
20 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAAATATTATAAAAT
Found at i:30324 original size:81 final size:78
Alignment explanation
Indices: 30211--30573 Score: 349
Period size: 81 Copynumber: 4.5 Consensus size: 78
30201 AAAGAAACAA
* *
30211 AGTTGGAGTATCACCTCAGAGATAGT-GGGTTGGAGTATCTCCGAAGATAGGAAAATTTGATGTT
1 AGTTGGAGTATC-CCTTAGAAATAGTGGGGTTGGAGTATC-CCGAAGAT-GGAAAATTTGATGTT
30275 TTAGAAGTAAAAACGG
63 TTAGAAGTAAAAACGG
* *
30291 AGTTTGAGTATTCCCTTAGAAAT-GATGGGGTTGGAGTATCCTTGAAGATGGAAAATTTGATGTT
1 AGTTGGAGTA-TCCCTTAGAAATAG-TGGGGTTGGAGTATCC-CGAAGATGGAAAATTTGATG-T
* *
30355 TTTAAAAGTAAAAATGG
62 TTTAGAAGTAAAAACGG
* * * *
30372 GGTTGGAGTATCCTTTCAGAAATAGTGGGGTTGGAGTATCCCCAAGATGAAAAATTTGATGTTTT
1 AGTTGGAGTATCCCTT-AGAAATAGTGGGGTTGGAGTATCCCGAAGATGGAAAATTTGATGTTTT
*
30437 AGAAATAAAAAC-G
65 AGAAGTAAAAACGG
* * * ** *
30450 AGGTTGGCGTATCGCCTTAGAAATAGTGGGGTTGGAGTTTCTCCAAAGATGGAAAATTCAATATC
1 A-GTTGGAGTATC-CCTTAGAAATAGTGGGGTTGGAGTATC-CCGAAGATGGAAAATTTGATGT-
*
30515 TTT-GAAAGTAAAAATAGG
62 TTTAG-AAGTAAAAA-CGG
* * * **
30533 -GTTGGAGTATTCCCTCAAAAATAGTGGAGTTAAAGTATCCC
1 AGTTGGAGTA-TCCCTTAGAAATAGTGGGGTTGGAGTATCCC
30574 TTTTTAATAT
Statistics
Matches: 235, Mismatches: 33, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
78 1 0.00
79 46 0.20
80 77 0.33
81 107 0.46
82 3 0.01
83 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (78 bp):
AGTTGGAGTATCCCTTAGAAATAGTGGGGTTGGAGTATCCCGAAGATGGAAAATTTGATGTTTTA
GAAGTAAAAACGG
Found at i:30440 original size:160 final size:160
Alignment explanation
Indices: 30212--30573 Score: 430
Period size: 160 Copynumber: 2.2 Consensus size: 160
30202 AAGAAACAAA
* * *
30212 GTTGGAGTATCACCTCAGAGATAGT-GGGTTGGAGTATCTCCGAAGATAGGAAAATTTGATGTTT
1 GTTGGAGTATC-CCTCAGAAATAGTGGGGTTGGAGTATC-CCCAAGATAGAAAAATTTGATGTTT
* * **
30276 TAGAAGTAAAAACG-GAGTTTGAGTATTC-CCTTAGAAAT-GATGGGGTTGGAGTATCCT-TGAA
64 TAGAAATAAAAACGAG-GTTGGAGTA-TCGCCTTAGAAATAG-TGGGGTTGGAGT-TCCTCCAAA
** * * *
30337 GATGGAAAATTTGATGTTTTTAAAAGTAAAAATGGG
125 GATGGAAAATTCAATATCTTTAAAAGTAAAAATAGG
*
30373 GTTGGAGTATCCTTTCAGAAATAGTGGGGTTGGAGTATCCCCAAGAT-GAAAAATTTGATGTTTT
1 GTTGGAGTATCC-CTCAGAAATAGTGGGGTTGGAGTATCCCCAAGATAGAAAAATTTGATGTTTT
* *
30437 AGAAATAAAAACGAGGTTGGCGTATCGCCTTAGAAATAGTGGGGTTGGAGTTTCTCCAAAGATGG
65 AGAAATAAAAACGAGGTTGGAGTATCGCCTTAGAAATAGTGGGGTTGGAGTTCCTCCAAAGATGG
*
30502 AAAATTCAATATCTTTGAAAGTAAAAATAGG
130 AAAATTCAATATCTTTAAAAGTAAAAATAGG
* * **
30533 GTTGGAGTATTCCCTCAAAAATAGTGGAGTTAAAGTATCCC
1 GTTGGAGTA-TCCCTCAGAAATAGTGGGGTTGGAGTATCCC
30574 TTTTTAATAT
Statistics
Matches: 173, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
159 5 0.03
160 122 0.71
161 33 0.19
162 13 0.08
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.30
Consensus pattern (160 bp):
GTTGGAGTATCCCTCAGAAATAGTGGGGTTGGAGTATCCCCAAGATAGAAAAATTTGATGTTTTA
GAAATAAAAACGAGGTTGGAGTATCGCCTTAGAAATAGTGGGGTTGGAGTTCCTCCAAAGATGGA
AAATTCAATATCTTTAAAAGTAAAAATAGG
Found at i:33045 original size:51 final size:51
Alignment explanation
Indices: 32909--33046 Score: 165
Period size: 51 Copynumber: 2.7 Consensus size: 51
32899 AATAGTTTGC
* * * *
32909 ATGTATCGATATATTAAAGAATGTATCGATACATATGGGTCAAAACTCAGA
1 ATGTATCGATACAATAGAGAATGTATCGATACATTTGGGTCAAAACTCAGA
* * *
32960 ATGTATCGATACAAT-GAATAATGTACCAATACATTTGGGTCAAAAAC-CTAGA
1 ATGTATCGATACAATAG-AGAATGTATCGATACATTTGGGTC-AAAACTC-AGA
33012 ATGTATCGATACAATAGA-AATGTATCGATACATTT
1 ATGTATCGATACAATAGAGAATGTATCGATACATTT
33047 TCCTTTCATA
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
51 49 0.66
52 24 0.32
53 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (51 bp):
ATGTATCGATACAATAGAGAATGTATCGATACATTTGGGTCAAAACTCAGA
Found at i:34546 original size:13 final size:13
Alignment explanation
Indices: 34530--34559 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
34520 ATACATTGTT
34530 CATTGTATCGATA
1 CATTGTATCGATA
34543 CATTGTATCGATA
1 CATTGTATCGATA
34556 CATT
1 CATT
34560 CTGGGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:36888 original size:79 final size:79
Alignment explanation
Indices: 36790--37233 Score: 425
Period size: 79 Copynumber: 5.6 Consensus size: 79
36780 TCATCTCGAG
* * * *
36790 ATTTTTCACAATC-GAGGATACTCTAACCCCGTTATTTTGGAGGGGATGCTCCAACCTCAG-TTT
1 ATTTTCCACAATCAG-GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACC-CAGATTT
36853 TATTTCCAAAACACTA
64 TATTTCCAAAACACTA
* * * * *
36869 ATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGACGGGATACTTCAACCCCGATTTTA
1 ATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCAGATTTTA
* * *
36934 TTTTCAAAAAACCA
66 TTTCCAAAACACTA
* *** * * *
36948 ATTTTCCACAATCAGGGATAATCCAATATCGTTA-TTTCTGAAGGGATACTCCAGCCCTGATTTT
1 ATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCAGATTTT
* *
37012 ATTTTCAAAA-AGCCA
65 ATTTCCAAAACA-CTA
* ** * *
37027 ATTTTCCACAATTAGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCGACCCCGATTTTA
1 ATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCAGATTTTA
* *
37092 TTTCTAAAACACTG
66 TTTCCAAAACACTA
* * * *
37106 ATTTTTCACAATCGGGGATACTCCAA-CCCGTTATTTCCGAGGGGATACTTCAACCCCA-ATTTT
1 ATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCAGATTTT
* * *
37169 ATTTCCAAAATAATG
65 ATTTCCAAAACACTA
* * * * *
37184 ATTTTCCATAATC-GAAGATACTCCAACCCTGTTATTTTTGAGGGGGTACT
1 ATTTTCCACAATCAG-GGATACTCCAACCCCGTTATTTTCGAGGGGATACT
37234 TCGACTCTAT
Statistics
Matches: 302, Mismatches: 54, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
77 1 0.00
78 66 0.22
79 229 0.76
80 6 0.02
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (79 bp):
ATTTTCCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCAGATTTTA
TTTCCAAAACACTA
Found at i:37249 original size:157 final size:157
Alignment explanation
Indices: 36789--37238 Score: 492
Period size: 158 Copynumber: 2.9 Consensus size: 157
36779 TTCATCTCGA
* * ** * * *
36789 GATTTTTCACAATCGAGGATACTCTAACCCCGTTATTTTGGAGGGGATGCTCCAACCTCAGTTTT
1 GATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAATTTT
* * * *
36854 ATTTCCAAAACACTAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTTCCGACGGGATACT
66 ATTTCCAAAA-ACTAATTTTCCACAATCAGGGATACTCCAACCCTGTTATTTTCGAGGGGATACT
*
36919 TCAACCCCGATTTTATTTTCAAAAAACC
130 TCGACCCCGATTTTATTTTCAAAAAACC
* * * * *** * * * **
36947 AATTTTCCACAATCAGGGATAATCCAATATCGTTATTTCTGAAGGGATACTCCAGCCCTGATTTT
1 GATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAATTTT
* * * *
37012 ATTTTCAAAAAGCCAATTTTCCACAATTAGGGATACTCCAACCCTATTATTTTCGAGGGGATACT
66 ATTTCCAAAAA-CTAATTTTCCACAATCAGGGATACTCCAACCCTGTTATTTTCGAGGGGATACT
* * *
37077 CCGACCCCGATTTTA-TTTCTAAAACACT
130 TCGACCCCGATTTTATTTTC-AAAAAACC
*
37105 GATTTTTCACAATCGGGGATACTCCAA-CCCGTTATTTCCGAGGGGATACTTCAACCCCAATTTT
1 GATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAATTTT
* * * * * *
37169 ATTTCCAAAATAATGATTTTCCATAATC-GAAGATACTCCAACCCTGTTATTTTTGAGGGGGTAC
66 ATTTCCAAAA-ACTAATTTTCCACAATCAG-GGATACTCCAACCCTGTTATTTTCGAGGGGATAC
37233 TTCGAC
129 TTCGAC
37239 TCTATTTTTA
Statistics
Matches: 235, Mismatches: 53, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
156 1 0.00
157 89 0.38
158 145 0.62
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (157 bp):
GATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAATTTT
ATTTCCAAAAACTAATTTTCCACAATCAGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTT
CGACCCCGATTTTATTTTCAAAAAACC
Found at i:40066 original size:78 final size:78
Alignment explanation
Indices: 39982--40320 Score: 285
Period size: 79 Copynumber: 4.3 Consensus size: 78
39972 ACCTGCTCAG
* * *
39982 AAATAACGGGGTTGGAGTATCCCCAATGGTGAAAAATCATAATTTAGAAATAAAATCGAGGCTGG
1 AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATCATAATTTGGAAATAAAATCGAGGTTGG
40047 AGTATCCCTTCAA
66 AGTATCCCTTCAA
* * * * * *
40060 AAATAACAGGGTTAGAGTA-CCCTCGATTGTGAAAAATCGGTATTTTGGAAATAAAA-CTGGGGT
1 AAATAACGGGGTTGGAGTATCCC-CAATTGTGAAAAATC-ATAATTTGGAAATAAAATC-GAGGT
*
40123 TGGAGTAT-CCTCTCGA
63 TGGAGTATCCCT-TCAA
* ** ** * * *
40139 AAATCAA-GGGGTTGGAGTATCTCCAATTGTGAAAAAATGGTGTTTTGGAAATAAGACCGGGGTT
1 AAAT-AACGGGGTTGGAGTATCCCCAATTGTG-AAAAATCATAATTTGGAAATAAAATCGAGGTT
* *
40203 GGAGTATCTCTTCAG
64 GGAGTATCCCTTCAA
* * * * *
40218 AAAT-ACGGGGTTGGAGTATCCTCGATTATGAAAAATTA-AAGTTTTGAAAATAAAATCGAGGTT
1 AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATCATAA--TTTGGAAATAAAATCGAGGTT
* * **
40281 AGAGTATCCCCTCGG
64 GGAGTATCCCTTCAA
**
40296 AAATAACAAGGTTGGAGTATCCCCA
1 AAATAACGGGGTTGGAGTATCCCCA
40321 CAGAAATAAC
Statistics
Matches: 208, Mismatches: 40, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
77 10 0.05
78 86 0.41
79 99 0.48
80 13 0.06
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (78 bp):
AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATCATAATTTGGAAATAAAATCGAGGTTGG
AGTATCCCTTCAA
Found at i:40263 original size:157 final size:159
Alignment explanation
Indices: 39981--40320 Score: 365
Period size: 157 Copynumber: 2.2 Consensus size: 159
39971 GACCTGCTCA
*
39981 GAAATAAC--GGGGTTGGAGTATCCCCAATGGTGAAAAATCATAATTTAGAAATAAAATCGAGGC
1 GAAATAACAAGGGGTTGGAGTATCCCCAATGGTGAAAAATCATAATTTAGAAATAAAACCGAGGC
* ** *
40044 TGGAGTATCCCTTCAAAAATAACAGGGTTAGAGTACCCTCGATTGTGAAAAATCGGTATTTTGGA
66 TGGAGTATCCCTTCAAAAATAACAGGGTTAGAGTACCCTCGATTATGAAAAATCGAAATTTTGAA
* * *
40109 AATAAAA-CTGGGGTTGGAGTATCCTCTC-
131 AATAAAATC-GAGGTTAGAGTATCCCCTCG
* * * ** ** * * *
40137 GAAA-ATCAAGGGGTTGGAGTATCTCCAATTGTGAAAAAATGGTGTTTTGGAAATAAGACCGGGG
1 GAAATAACAAGGGGTTGGAGTATCCCCAATGGTG-AAAAATCATAATTTAGAAATAAAACCGAGG
* * * * * * *
40201 TTGGAGTATCTCTTCAGAAAT-ACGGGGTTGGAGTATCCTCGATTATGAAAAAT-TAAAGTTTTG
65 CTGGAGTATCCCTTCAAAAATAACAGGGTTAGAGTACCCTCGATTATGAAAAATCGAAA-TTTTG
40264 AAAATAAAATCGAGGTTAGAGTATCCCCTCG
129 AAAATAAAATCGAGGTTAGAGTATCCCCTCG
40295 GAAATAACAA--GGTTGGAGTATCCCCA
1 GAAATAACAAGGGGTTGGAGTATCCCCA
40321 CAGAAATAAC
Statistics
Matches: 150, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
155 2 0.01
156 5 0.03
157 94 0.63
158 45 0.30
159 4 0.03
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.27
Consensus pattern (159 bp):
GAAATAACAAGGGGTTGGAGTATCCCCAATGGTGAAAAATCATAATTTAGAAATAAAACCGAGGC
TGGAGTATCCCTTCAAAAATAACAGGGTTAGAGTACCCTCGATTATGAAAAATCGAAATTTTGAA
AATAAAATCGAGGTTAGAGTATCCCCTCG
Found at i:40313 original size:28 final size:28
Alignment explanation
Indices: 40276--40346 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
40266 AATAAAATCG
* * *
40276 AGGTTAGAGTATCCCCTCGGAAATAACA
1 AGGTTGGAGTATCCCCACAGAAATAACA
*
40304 AGGTTGGAGTATCCCCACAGAAATAACG
1 AGGTTGGAGTATCCCCACAGAAATAACA
40332 AGGTTGGAGTATCCC
1 AGGTTGGAGTATCCC
40347 TAATTTTGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (28 bp):
AGGTTGGAGTATCCCCACAGAAATAACA
Found at i:40376 original size:107 final size:106
Alignment explanation
Indices: 40199--40427 Score: 264
Period size: 107 Copynumber: 2.2 Consensus size: 106
40189 ATAAGACCGG
* ** * * *
40199 GGTTGGAGTATCTCTTCAGAAATACGGGGTTGGAGTATCCTCGATTATGAAAAATTAAAGTTTTG
1 GGTTGGAGTATCCCCACAGAAATACGAGGTTGGAGTATCCTCAATTATGAAAAATTAAAGTTGTG
**
40264 AAAATAAAATC-GAGGTTAGAGTATCCCCTCGGAAATAACAA
66 AAAATAAAATCAG-GGTTAGAGTATCCCCTCAAAAATAACAA
* * ***
40305 GGTTGGAGTATCCCCACAGAAATAACGAGGTTGGAGTATCC-CTAATTTTGGAAAATTGGTGTTG
1 GGTTGGAGTATCCCCACAGAAAT-ACGAGGTTGGAGTATCCTC-AATTATGAAAAATTAAAGTTG
* * * *
40369 TGGAAATAAAATCAGGGTTGGAGTATCCTCTCAAAAATAACGA
64 TGAAAATAAAATCAGGGTTAGAGTATCCCCTCAAAAATAACAA
40412 GGTTGGAGTATCCCCA
1 GGTTGGAGTATCCCCA
40428 ATTGTGAAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
106 21 0.20
107 81 0.79
108 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (106 bp):
GGTTGGAGTATCCCCACAGAAATACGAGGTTGGAGTATCCTCAATTATGAAAAATTAAAGTTGTG
AAAATAAAATCAGGGTTAGAGTATCCCCTCAAAAATAACAA
Found at i:40390 original size:79 final size:79
Alignment explanation
Indices: 40305--40487 Score: 260
Period size: 79 Copynumber: 2.3 Consensus size: 79
40295 GAAATAACAA
* * * * * *
40305 GGTTGGAGTATCCCCACAGAAATAACGAGGTTGGAGTATCCCTAATTTTGGAAAATTGGTGTTGT
1 GGTTGGAGTATCCTCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTGT
*
40370 -GGAAATAAAATCAG
66 AGG-AATAAAACCAG
* *
40384 GGTTGGAGTATCCTCTCAAAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTTT
1 GGTTGGAGTATCCTCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTGT
*
40449 AGGAATAAAACCGG
66 AGGAATAAAACCAG
40463 GGTTGGAGTATCCTCTCAGAAATAA
1 GGTTGGAGTATCCTCTCAGAAATAA
40488 AAACATGAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 90 0.98
80 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
GGTTGGAGTATCCTCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTGT
AGGAATAAAACCAG
Found at i:42919 original size:12 final size:13
Alignment explanation
Indices: 42894--42935 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
42884 TAAAACCTAG
42894 AATGTATCCATAC
1 AATGTATCCATAC
42907 AATGTAT-CATAC
1 AATGTATCCATAC
42919 AATGTATCCATAC
1 AATGTATCCATAC
42932 AATG
1 AATG
42936 AACAATGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.43
13 16 0.57
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (13 bp):
AATGTATCCATAC
Found at i:42942 original size:20 final size:20
Alignment explanation
Indices: 42894--42965 Score: 72
Period size: 20 Copynumber: 3.4 Consensus size: 20
42884 TAAAACCTAG
42894 AATGTATCCATACAATGTATCATAC
1 AATGTATCCATACAATG----A-AC
42919 AATGTATCCATACAATGAAC
1 AATGTATCCATACAATGAAC
* * *
42939 AATGTATCGATAAAATGAAT
1 AATGTATCCATACAATGAAC
42959 AATGTAT
1 AATGTAT
42966 TGATACGTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
20 26 0.59
21 1 0.02
25 17 0.39
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (20 bp):
AATGTATCCATACAATGAAC
Found at i:43144 original size:43 final size:43
Alignment explanation
Indices: 43083--43377 Score: 293
Period size: 43 Copynumber: 6.3 Consensus size: 43
43073 TAAGGGCATC
* *
43083 TATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGA
1 TATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
43126 TATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
1 TATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
*
43169 CATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
1 TATTGGACTT----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
* * * *
43218 CATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
1 TATTGGAC-T-----T---AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
43270 TATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
1 TATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
* * *
43313 CATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTA
1 TATTGGACTT-AA-A-G--G-TGCCAATGTGCTGAGTCAAGGCCAGCTA
*
43362 TATTGGGCTTAGAAGG
1 TATTGGACTTA-AAGG
43378 GTTGCCACCG
Statistics
Matches: 215, Mismatches: 18, Indels: 36
0.80 0.07 0.13
Matches are distributed among these distances:
43 89 0.41
44 2 0.01
45 2 0.01
46 2 0.01
47 2 0.01
48 3 0.01
49 75 0.35
50 1 0.00
51 1 0.00
52 36 0.17
54 1 0.00
55 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (43 bp):
TATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTA
Found at i:43209 original size:49 final size:49
Alignment explanation
Indices: 43094--43372 Score: 339
Period size: 49 Copynumber: 5.9 Consensus size: 49
43084 ATTGGACTTA
* * *
43094 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT----A--
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
43137 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
43186 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* * * *
43236 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--
1 --AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
43281 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * * *
43330 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTA
43373 GAAGGGTTGC
Statistics
Matches: 205, Mismatches: 16, Indels: 24
0.84 0.07 0.10
Matches are distributed among these distances:
43 77 0.38
47 2 0.01
48 1 0.00
49 86 0.42
50 1 0.00
52 38 0.19
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (49 bp):
AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:43322 original size:95 final size:94
Alignment explanation
Indices: 43083--43377 Score: 376
Period size: 92 Copynumber: 3.2 Consensus size: 94
43073 TAAGGGCATC
* * *
43083 TATTGGACTTA-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----T-AAAG
1 TATTGGACTTAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAG
* *
43140 GTGCCAATGTGCTGAGTCAAGGCCAGCTA
66 GTGCCAATATGCTGATTCAAGGCCAGCTA
*
43169 CATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 TATTGGACTT----A-GAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
*
43234 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
61 -G-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTA
43270 TATTGGACTTA-AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG-AAG
1 TATTGGACTTAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAG
*
43333 ATGCCAATATGCTGATTCAAGGCCAGCTA
66 GTGCCAATATGCTGATTCAAGGCCAGCTA
*
43362 TATTGGGCTTAGAAGG
1 TATTGGACTTAGAAGG
43378 GTTGCCACCG
Statistics
Matches: 182, Mismatches: 11, Indels: 25
0.83 0.05 0.11
Matches are distributed among these distances:
86 9 0.05
90 1 0.01
92 77 0.42
93 5 0.03
94 1 0.01
95 48 0.26
97 1 0.01
98 1 0.01
101 39 0.21
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (94 bp):
TATTGGACTTAGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAG
GTGCCAATATGCTGATTCAAGGCCAGCTA
Found at i:43353 original size:144 final size:144
Alignment explanation
Indices: 43093--43372 Score: 506
Period size: 144 Copynumber: 1.9 Consensus size: 144
43083 TATTGGACTT
*
43093 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
* *
43158 AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
66 AAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAGTCAAGGCCAGCTACATTG
43223 GACTTAAAGATGGA
131 GACTTAAAGATGGA
43237 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
* *
43302 AAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTG
66 AAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAGTCAAGGCCAGCTACATTG
*
43367 GGCTTA
131 GACTTA
43373 GAAGGGTTGC
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 130 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (144 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
AAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGAGTCAAGGCCAGCTACATTG
GACTTAAAGATGGA
Found at i:43416 original size:33 final size:35
Alignment explanation
Indices: 43372--43441 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
43362 TATTGGGCTT
43372 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
43406 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
43440 AG
1 AG
43442 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:43484 original size:34 final size:34
Alignment explanation
Indices: 43446--44044 Score: 616
Period size: 34 Copynumber: 17.8 Consensus size: 34
43436 AGGAAGGGAG
* *
43446 AAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAA
*
43480 AAAGAATGCCACGGAGTTGTGGGCTTT-AAAAGAAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAG---AA
* ** * *
43517 AAAGGTGCCACGGAGTTGTGGACTTACAGATGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* *
43551 AAAAGTGCCACGGAGTTATGGGC-TT-AAAAG--
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* *
43581 ---GGTGCCACGGAGTTGTGGGCTTAG-AAGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* *
43611 GAAGAGTGCCACAGAGTTGTGGGCTTT---AA-AA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* *
43642 AGA-GTGCCACGGAGTCGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* **
43675 GAAGGTGCCATAGAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
*
43709 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
*
43743 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAA
*
43779 AAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAA
*
43814 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
*
43848 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAA--GAA
*
43884 AAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAA
*
43919 GAAGGTGCCACGGAGTTGTGGGCTTT--AAAG--
1 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
*
43949 --A-GTGCCACGGAGTCGTGGGCTTTGAAAAGAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTG-AAA-AGAA
43982 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAACAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAA-AGAA
* *
44017 AAAGGTGCCACGGAGTCGTGGACTTTGA
1 AAAGGTGCCACGGAGTTGTGGGCTTTGA
44045 GACAAAATGC
Statistics
Matches: 486, Mismatches: 43, Indels: 71
0.81 0.07 0.12
Matches are distributed among these distances:
27 39 0.08
28 5 0.01
29 20 0.04
30 2 0.00
31 5 0.01
32 10 0.02
33 5 0.01
34 238 0.49
35 43 0.09
36 37 0.08
37 82 0.17
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (34 bp):
AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
Found at i:43501 original size:71 final size:67
Alignment explanation
Indices: 43426--44044 Score: 548
Period size: 71 Copynumber: 9.2 Consensus size: 67
43416 CACCGACTTG
* * * * *
43426 TGTGGGCTTTAGGAAGGGAGAAAGATGCCACGGAGTTGTGGACTTAAAAGGGAAAAAGAATGCCA
1 TGTGGGCTTT-GAAAGGAAGAAAGGTGCCACGGAGTTGTGGGCTTAAAA--GAAAAAG-GTGCCA
43491 CGGAGT
62 CGGAGT
* * * * * *
43497 TGTGGGCTTTAAAAGAAAAAAAAGGTGCCACGGAGTTGTGGACTTACAGATGAAAAAAGTGCCAC
1 TGTGGGCTTTGAAAG-GAAGAAAGGTGCCACGGAGTTGTGGGCTTA-A-AAGAAAAAGGTGCCAC
43562 GGAGT
63 GGAGT
* * * *
43567 TATGGGC-TT--AA--AAG---GGTGCCACGGAGTTGTGGGCTTAGAAGGAAGAAGAGTGCCACA
1 TGTGGGCTTTGAAAGGAAGAAAGGTGCCACGGAGTTGTGGGCTTA-AAAGAAAAAG-GTGCCACG
43624 GAGT
64 GAGT
* * **
43628 TGTGGGCTTT-AAA--AAG--A-GTGCCACGGAGTCGTGGGCTTTGAAAAGAAGAAGGTGCCATA
1 TGTGGGCTTTGAAAGGAAGAAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGGTGCCACG
43687 GAGT
64 GAGT
* *
43691 TGTGGGCTTTGAAAAGAAG-AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACG
1 TGTGGGCTTTGAAAGGAAGAAAGGTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGGTGCCACG
43755 GAGT
64 GAGT
* *
43759 TGTGGGCTTTGAAAAGGGAA-AAAGAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCC
1 TGTGGGCTTTG-AAA-GGAAGAAAG-GTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGGTGCC
43823 ACGGAGT
61 ACGGAGT
*
43830 TGTGGGCTTTGAAAAGAAG-AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTGAAAGGAAGAAAGGTGCCACGGAGTTGTGGGC-TT-AAAA--GAAAAAG-GTGCC
*
43894 ACAGAGT
61 ACGGAGT
* *
43901 TGTGGGCTTTGAAAAGAAG-AAGGTGCCACGGAGTTGTGGGCTTTAAAG----A-GTGCCACGGA
1 TGTGGGCTTTGAAAGGAAGAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACGGA
43960 GT
66 GT
*
43962 CGTGGGCTTTGAAAAGAGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCC
1 TGTGGGCTTTG-AAAG-GAAGAAAG-GTGCCACGGAGTTGTGGGC-TTAAA-AGAAAAAGGTGCC
44026 ACGGAGT
61 ACGGAGT
* *
44033 CGTGGACTTTGA
1 TGTGGGCTTTGA
44045 GACAAAATGC
Statistics
Matches: 479, Mismatches: 36, Indels: 67
0.82 0.06 0.12
Matches are distributed among these distances:
60 6 0.01
61 61 0.13
62 5 0.01
63 51 0.11
64 35 0.07
65 5 0.01
66 5 0.01
67 4 0.01
68 80 0.17
69 14 0.03
70 39 0.08
71 172 0.36
72 1 0.00
73 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20
Consensus pattern (67 bp):
TGTGGGCTTTGAAAGGAAGAAAGGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGGTGCCACGGA
GT
Found at i:43577 original size:105 final size:102
Alignment explanation
Indices: 43446--44079 Score: 622
Period size: 105 Copynumber: 6.3 Consensus size: 102
43436 AGGAAGGGAG
* * *
43446 AAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAATGCCACGGAGTTGTGGGCTTT-A
1 AAAG-TGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGA
*
43508 AAAGAAAAAAAAGGTGCCACGGAGTTGTGGACTTACAGATGAAA
65 AAAG---AAAAAGGTGCCACGGAGTTGTGGGCTT--A-ATGAAA
* * *
43552 AAAGTGCCACGGAGTTATGGGC-TT-AAAA--G-----G-GTGCCACGGAGTTGTGGGCTTAG-A
1 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
* * *
43606 AGGAAGAAGAGTGCCACAGAGTTGTGGGCTT--T-AAA
66 AAGAAAAAG-GTGCCACGGAGTTGTGGGCTTAATGAAA
* * *
43641 AAGAGTGCCACGGAGTCGTGGGCTTTGAAAA--GAAGAAG-GTGCCATAGAGTTGTGGGCTTTGA
1 AA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGA
* * *
43703 AAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAG
65 AAAGAAAAAGGTGCCACGGAGTTGTGGGC-TT--AATGAAA
*
43744 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
1 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
* * *
43809 AAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAG
66 AAGAAAAAGGTGCCACGGAGTTGTGGGC-TT--AATGAAA
*
43849 AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
1 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
*
43914 AAGAAGAAGGTGCCACGGAGTTGTGGGCTT--T--AA
66 AAGAAAAAGGTGCCACGGAGTTGTGGGCTTAATGAAA
* * * *
43947 AGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
1 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
* *
44011 ACAGAAAAAGGTGCCACGGAGTCGTGGACTT--TGAGACA
66 A-AGAAAAAGGTGCCACGGAGTTGTGGGCTTAATGA-A-A
* * * *
44049 AAA-TGCCACTGAGTCGTGGACTTTAAAAAGG
1 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGG
44080 TATTTGAAGA
Statistics
Matches: 467, Mismatches: 36, Indels: 55
0.84 0.06 0.10
Matches are distributed among these distances:
89 5 0.01
90 19 0.04
91 2 0.00
92 5 0.01
94 5 0.01
95 19 0.04
97 65 0.14
98 97 0.21
101 25 0.05
102 29 0.06
103 5 0.01
104 8 0.02
105 179 0.38
106 4 0.01
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (102 bp):
AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
AAGAAAAAGGTGCCACGGAGTTGTGGGCTTAATGAAA
Found at i:43587 original size:27 final size:27
Alignment explanation
Indices: 43555--43608 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
43545 GATGAAAAAA
43555 GTGCCACGGAGTTATGGGCTTAAAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
* *
43582 GTGCCACGGAGTTGTGGGCTTAGAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
43609 AAGAAGAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (27 bp):
GTGCCACGGAGTTATGGGCTTAAAAGG
Found at i:45036 original size:16 final size:16
Alignment explanation
Indices: 45015--45052 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
45005 GGGGTTTTTC
45015 TTTTTTTTTTGCATCT
1 TTTTTTTTTTGCATCT
45031 TTTTTTTTTTGCATCT
1 TTTTTTTTTTGCATCT
45047 TTTTTT
1 TTTTTT
45053 GTGAAGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.05, C:0.11, G:0.05, T:0.79
Consensus pattern (16 bp):
TTTTTTTTTTGCATCT
Found at i:49112 original size:21 final size:21
Alignment explanation
Indices: 49088--49130 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
49078 ATCAAAATGA
49088 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
49109 CATTCATTGCATGACGAGATG
1 CATTCATTGCATGACGAGATG
49130 C
1 C
49131 TCCTGACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (21 bp):
CATTCATTGCATGACGAGATG
Found at i:62257 original size:21 final size:20
Alignment explanation
Indices: 62214--62309 Score: 88
Period size: 20 Copynumber: 4.8 Consensus size: 20
62204 TTTGTCTGCG
62214 TGTATCGATACATTGAATAA
1 TGTATCGATACATTGAATAA
* **
62234 TGTATTGATACATCTGGGTAA
1 TGTATCGATACAT-TGAATAA
* * *
62255 TGTATGGATATATTGAATCA
1 TGTATCGATACATTGAATAA
* *
62275 TGTATCGATACA--AAACTTA
1 TGTATCGATACATTGAA-TAA
62294 TGTATCGATACATTGA
1 TGTATCGATACATTGA
62310 TCGATACAAA
Statistics
Matches: 59, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
18 2 0.03
19 14 0.24
20 26 0.44
21 17 0.29
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTGAATAA
Found at i:64426 original size:52 final size:51
Alignment explanation
Indices: 64356--64493 Score: 154
Period size: 52 Copynumber: 2.7 Consensus size: 51
64346 ATTTAACTGG
*
64356 ATATATCGATACATTGAAGAATATATTGATACATTTAGG-TCAAAAACCCAAA
1 ATATATCGATACAATGAAGAATATATTGATACATTT-GGATC-AAAACCCAAA
* * * * ** *
64408 ATATATCAACACAGTGAAGAATTTATCAATACATTTGGATCAAAACCCAGA
1 ATATATCGATACAATGAAGAATATATTGATACATTTGGATCAAAACCCAAA
* *
64459 ATGTATCGATGCAATGAA-AATATATTGATACATTT
1 ATATATCGATACAATGAAGAATATATTGATACATTT
64494 TCTTTCCATT
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
50 14 0.20
51 24 0.34
52 32 0.46
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (51 bp):
ATATATCGATACAATGAAGAATATATTGATACATTTGGATCAAAACCCAAA
Found at i:64553 original size:21 final size:21
Alignment explanation
Indices: 64529--64582 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
64519 GACATGTTCC
64529 TGTATCGATACATTTCAAAAA
1 TGTATCGATACATTTCAAAAA
* ***
64550 TGTATCGATATA-TTCACTTA
1 TGTATCGATACATTTCAAAAA
64570 TGTATCGATACAT
1 TGTATCGATACAT
64583 GCACTTGTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (21 bp):
TGTATCGATACATTTCAAAAA
Found at i:64572 original size:20 final size:21
Alignment explanation
Indices: 64549--64602 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
64539 CATTTCAAAA
* *
64549 ATGTATCGATATATTCACTT-
1 ATGTATCGATACATGCACTTG
64569 ATGTATCGATACATGCACTTG
1 ATGTATCGATACATGCACTTG
*
64590 TTGTATCGATACA
1 ATGTATCGATACA
64603 AATTGTAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (21 bp):
ATGTATCGATACATGCACTTG
Found at i:67630 original size:44 final size:44
Alignment explanation
Indices: 67567--67654 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
67557 ATGATTGGTT
67567 TTTCGTCATTCCATTTATAAAATATTAAATAACTGTTAAAAAAC
1 TTTCGTCATTCCATTTATAAAATATTAAATAACTGTTAAAAAAC
67611 TTTCGTCATTCCATTTATAAAATATTAAATAACTGTTAAAAAAC
1 TTTCGTCATTCCATTTATAAAATATTAAATAACTGTTAAAAAAC
67655 AATAACTTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.39
Consensus pattern (44 bp):
TTTCGTCATTCCATTTATAAAATATTAAATAACTGTTAAAAAAC
Found at i:67671 original size:44 final size:43
Alignment explanation
Indices: 67578--67672 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 43
67568 TTCGTCATTC
** *
67578 CATTTATAAAATATTAAATAACTGTTAAAAAACTTTCGTCATT
1 CATTTATAAAATATTAAATAACTGTTAAAAAACTAACGTAATT
*
67621 CCATTTATAAAATATTAAATAACTGTTAAAAAACAATAACTTAATT
1 -CATTTATAAAATATTAAATAACTGTTAAAAAAC--TAACGTAATT
67667 -ATTTAT
1 CATTTAT
67673 TTATTTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
44 39 0.87
46 6 0.13
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (43 bp):
CATTTATAAAATATTAAATAACTGTTAAAAAACTAACGTAATT
Found at i:68806 original size:16 final size:16
Alignment explanation
Indices: 68785--68816 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
68775 TACTTCAATT
68785 TAATAAATAAAATTTA
1 TAATAAATAAAATTTA
*
68801 TAATAATTAAAATTTA
1 TAATAAATAAAATTTA
68817 ATTAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAAATAAAATTTA
Found at i:70179 original size:20 final size:20
Alignment explanation
Indices: 70136--70191 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
70126 CATAAATGAA
70136 TGTATCGATACATACTTATAAT
1 TGTATCGATACAT--TTATAAT
*
70158 TGTATCGATACATTTATCAT
1 TGTATCGATACATTTATAAT
* *
70178 TGTGTCAATACATT
1 TGTATCGATACATT
70192 ATGGGTTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 18 0.58
22 13 0.42
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATTTATAAT
Found at i:72676 original size:79 final size:78
Alignment explanation
Indices: 72585--73029 Score: 436
Period size: 79 Copynumber: 5.6 Consensus size: 78
72575 TCATTGATGT
* *
72585 TTTTATTTCTAAAATA-CTGATTTTCCACTATCAGGGATACTCCAACCCCATTATTTTTGAAGGG
1 TTTTATTTCTAAAATATC-GATTTTCCACCATC-GGGATACTCCAACCCCGTTATTTTTGAAGGG
*
72649 ATACTCTAAACCCGG
64 ATACTCTAAACCCGA
* * * *
72664 TTTTATTTCTAAAACATTGATTTTCCACCATCGGGGATACTCCAACCCTGTTATTTTCGAAGGGA
1 TTTTATTTCTAAAATATCGATTTTCCACCATC-GGGATACTCCAACCCCGTTATTTTTGAAGGGA
*
72729 TACTC-CAACCTCGA
65 TACTCTAAACC-CGA
* * * * * *
72743 TTTTATTTTTAAAAAATCGATTTTCCACCACCATCCGGGATACTCTAATCTCGTTATTTCTG-AG
1 TTTTATTTCTAAAATATCGATTTT---CCACCAT-CGGGATACTCCAACCCCGTTATTTTTGAAG
*
72807 AGGATACT-TCAATCCCGA
62 -GGATACTCT-AAACCCGA
** * * *
72825 TTTTATTTCTAAAA-CGCTGATTTTCCACCATCGAGGATACTCCAACCCTGTTATTTTTTATGGG
1 TTTTATTTCTAAAATATC-GATTTTCCACCATCG-GGATACTCCAACCCCGTTATTTTTGAAGGG
* *
72889 ATACTC-CAACCCTGG
64 ATACTCTAAACCC-GA
* * *
72904 TTTTATTTCTAAAATATCGATTTTTCACCATCGGAGATACTCCATCCCCGTTATTTTTGAGGGGA
1 TTTTATTTCTAAAATATCGATTTTCCACCATCGG-GATACTCCAACCCCGTTATTTTTGAAGGGA
72969 TACTCT-AACCTCGA
65 TACTCTAAACC-CGA
* * * *
72983 TTTTTTTTCCAAAATATCGATTTTTCACTATCGGGGATACTCCAACC
1 TTTTATTTCTAAAATATCGATTTTCCACCATC-GGGATACTCCAACC
73030 ACTTTTTTAT
Statistics
Matches: 302, Mismatches: 45, Indels: 38
0.78 0.12 0.10
Matches are distributed among these distances:
78 11 0.04
79 223 0.74
80 5 0.02
81 3 0.01
82 56 0.19
83 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.37
Consensus pattern (78 bp):
TTTTATTTCTAAAATATCGATTTTCCACCATCGGGATACTCCAACCCCGTTATTTTTGAAGGGAT
ACTCTAAACCCGA
Found at i:72848 original size:161 final size:157
Alignment explanation
Indices: 72585--73029 Score: 467
Period size: 161 Copynumber: 2.8 Consensus size: 157
72575 TCATTGATGT
* * * *
72585 TTTTATTTCTAAAATA-CTGATTTTCCACTATCAGG-GATACTCCAA-CCCCATTATTTTTGA-A
1 TTTTATTTCTAAAAAATC-GATTTTCCACCATC-GGAGATACT-CAATCCCCGTTATTTCTGAGA
* *
72646 GGGATACTCTAAACCCGGTTTTATTTCTAAAACATTGATTTTCCACCATCGGGGATACTCCAACC
63 -GGATACTCT-AACCCGATTTTATTTCTAAAACAATGATTTTCCACCATCGGGGATACTCCAACC
72711 CTGTTATTTTCGAAGGGATACTCCAA-CCTCGA
126 CTGTTATTTTCGAAGGGATACTCCAACCCT-GA
* *
72743 TTTTATTTTTAAAAAATCGATTTTCCACCACCATCCGG-GATACTCTAAT-CTCGTTATTTCTGA
1 TTTTATTTCTAAAAAATCGATTTT---CCACCAT-CGGAGATACTC-AATCCCCGTTATTTCTGA
** *
72806 GAGGATACT-TCAATCCCGATTTTATTTCTAAAACGCTGATTTTCCACCATCGAGGATACTCCAA
61 GAGGATACTCT-AA-CCCGATTTTATTTCTAAAACAATGATTTTCCACCATCGGGGATACTCCAA
** * *
72870 CCCTGTTATTTTTTATGGGATACTCCAACCCTGG
124 CCCTGTTATTTTCGAAGGGATACTCCAACCCTGA
* * * * *
72904 TTTTATTTCTAAAATATCGATTTTTCACCATCGGAGATACTCCATCCCCGTTATTTTTGAGGGGA
1 TTTTATTTCTAAAAAATCGATTTTCCACCATCGGAGATACTCAATCCCCGTTATTTCTGAGAGGA
* * * * *
72969 TACTCTAACCTCGATTTTTTTTCCAAAA-TATCGATTTTTCACTATCGGGGATACTCCAACC
66 TACTCTAACC-CGATTTTATTTCTAAAACAAT-GATTTTCCACCATCGGGGATACTCCAACC
73030 ACTTTTTTAT
Statistics
Matches: 243, Mismatches: 29, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
157 8 0.03
158 96 0.40
159 2 0.01
160 4 0.02
161 128 0.53
162 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.37
Consensus pattern (157 bp):
TTTTATTTCTAAAAAATCGATTTTCCACCATCGGAGATACTCAATCCCCGTTATTTCTGAGAGGA
TACTCTAACCCGATTTTATTTCTAAAACAATGATTTTCCACCATCGGGGATACTCCAACCCTGTT
ATTTTCGAAGGGATACTCCAACCCTGA
Found at i:73026 original size:130 final size:130
Alignment explanation
Indices: 72886--73129 Score: 321
Period size: 130 Copynumber: 1.9 Consensus size: 130
72876 TATTTTTTAT
* * *
72886 GGGATACTCCAACC-CTGGTTTTATTTCTAAAATATCGATTTTTCACCATCGGAGATACTCCATC
1 GGGATACTCCAACCACT-GTTTTATTTCTAAAATATCAATTTCTCACCATCGGAGATACTCCAAC
* * * *
72950 CCCGTTATTTTTGAGGGGATACTCTAACCTCGATTTTT-TTTCCAAAATATCGATTTTTCACTAT
65 CCCGTTATTTTCGAGGAGATACTCCAACC-CGATTTTTATCTCCAAAATATCGATTTTTCACTAT
73014 CG
129 CG
* * * * *
73016 GGGATACTCCAACCACTTTTTTATTTTTAAAATATCAATTTCTCACTATCGGGGATATTCCAACC
1 GGGATACTCCAACCACTGTTTTATTTCTAAAATATCAATTTCTCACCATCGGAGATACTCCAACC
* * *
73081 CCGTTGTTTTCGATGAGATACTCCAACCCTATTTTTATCTCCAAAATAT
66 CCGTTATTTTCGAGGAGATACTCCAACCCGATTTTTATCTCCAAAATAT
73130 TAAATTTTTC
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
129 7 0.07
130 88 0.91
131 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.38
Consensus pattern (130 bp):
GGGATACTCCAACCACTGTTTTATTTCTAAAATATCAATTTCTCACCATCGGAGATACTCCAACC
CCGTTATTTTCGAGGAGATACTCCAACCCGATTTTTATCTCCAAAATATCGATTTTTCACTATCG
Found at i:74138 original size:17 final size:18
Alignment explanation
Indices: 74108--74141 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
74098 CCTTGTCAAC
*
74108 CATTGTTTCCAATTTTCT
1 CATTGTTTCAAATTTTCT
74126 CATT-TTTCAAATTTTC
1 CATTGTTTCAAATTTTC
74142 ACACTCTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.21, C:0.21, G:0.03, T:0.56
Consensus pattern (18 bp):
CATTGTTTCAAATTTTCT
Found at i:78280 original size:30 final size:31
Alignment explanation
Indices: 78217--78282 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
78207 GGTGATTACC
* **
78217 TTTTTTCATTAATTATGTTATTTATATGTCA
1 TTTTTTCATTAATTATGTTATCTATATCACA
* *
78248 TTTTTT-ATTAATTATTTTATCTATTTCACA
1 TTTTTTCATTAATTATGTTATCTATATCACA
78278 TTTTT
1 TTTTT
78283 ATAGGTGGCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTTTTCATTAATTATGTTATCTATATCACA
Found at i:80716 original size:20 final size:20
Alignment explanation
Indices: 80665--80757 Score: 91
Period size: 20 Copynumber: 4.6 Consensus size: 20
80655 ACCCTTAAAA
* *
80665 GTATCGATACACAATT-CAAA
1 GTATCGATACA-TATTGCAAT
80685 GTATCGATACATATTGCAAT
1 GTATCGATACATATTGCAAT
***
80705 GTATCGATACATGA-AAAAGAT
1 GTATCGATACAT-ATTGCA-AT
*
80726 GTATCGATACATGTTGCAAT
1 GTATCGATACATATTGCAAT
80746 GTATCGATACAT
1 GTATCGATACAT
80758 GAAAAAGATG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
19 3 0.05
20 41 0.68
21 16 0.27
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACATATTGCAAT
Found at i:80729 original size:21 final size:21
Alignment explanation
Indices: 80703--80778 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
80693 ACATATTGCA
80703 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
80724 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
80744 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
80765 ATGTATCGATACAT
1 ATGTATCGATACAT
80779 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:80736 original size:41 final size:41
Alignment explanation
Indices: 80685--80778 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
80675 ACAATTCAAA
80685 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
*
80726 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
80767 GTATCGATACAT
1 GTATCGATACAT
80779 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
Found at i:80758 original size:20 final size:20
Alignment explanation
Indices: 80685--80758 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
80675 ACAATTCAAA
*
80685 GTATCGATACATATTGCAAT
1 GTATCGATACATGTTGCAAT
****
80705 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
80726 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
80746 GTATCGATACATG
1 GTATCGATACATG
80759 AAAAAGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:83089 original size:21 final size:21
Alignment explanation
Indices: 83056--83100 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
83046 TTGCAAGTTG
*
83056 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
83078 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
83098 AAA
1 AAA
83101 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:87043 original size:13 final size:13
Alignment explanation
Indices: 87025--87060 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
87015 TTTTTCTTTA
87025 TATCGATACAATG
1 TATCGATACAATG
*
87038 TATCGATACACTG
1 TATCGATACAATG
87051 TATCGATACA
1 TATCGATACA
87061 GGGTGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:89545 original size:20 final size:20
Alignment explanation
Indices: 89494--89586 Score: 91
Period size: 20 Copynumber: 4.6 Consensus size: 20
89484 ACCCTTAAAA
* *
89494 GTATCGATACACAATT-CAAA
1 GTATCGATACA-TATTGCAAT
89514 GTATCGATACATATTGCAAT
1 GTATCGATACATATTGCAAT
***
89534 GTATCGATACATGA-AAAAGAT
1 GTATCGATACAT-ATTGCA-AT
*
89555 GTATCGATACATGTTGCAAT
1 GTATCGATACATATTGCAAT
89575 GTATCGATACAT
1 GTATCGATACAT
89587 GAAAAAGATG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
19 3 0.05
20 41 0.68
21 16 0.27
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACATATTGCAAT
Found at i:89558 original size:21 final size:21
Alignment explanation
Indices: 89532--89607 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
89522 ACATATTGCA
89532 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
89553 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
89573 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
89594 ATGTATCGATACAT
1 ATGTATCGATACAT
89608 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:89565 original size:41 final size:41
Alignment explanation
Indices: 89514--89607 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
89504 ACAATTCAAA
89514 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
*
89555 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
89596 GTATCGATACAT
1 GTATCGATACAT
89608 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATATTGCAATGTATCGATACATGAAAAAGAT
Found at i:89587 original size:20 final size:20
Alignment explanation
Indices: 89514--89587 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
89504 ACAATTCAAA
*
89514 GTATCGATACATATTGCAAT
1 GTATCGATACATGTTGCAAT
****
89534 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
89555 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
89575 GTATCGATACATG
1 GTATCGATACATG
89588 AAAAAGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:89664 original size:13 final size:13
Alignment explanation
Indices: 89646--89671 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
89636 TACAGCAAGT
89646 ATGTATCGATACA
1 ATGTATCGATACA
89659 ATGTATCGATACA
1 ATGTATCGATACA
89672 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:90527 original size:33 final size:31
Alignment explanation
Indices: 90490--90560 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 31
90480 ATTATATTTA
*
90490 AAATATTATATATTTACATAAATTTTAATATAT
1 AAATATTATATA-TTACATAAAATTTAATA-AT
* *
90523 AAATAATATATATTATATAAAATTTAATAAT
1 AAATATTATATATTACATAAAATTTAATAAT
*
90554 ATATATT
1 AAATATT
90561 TTTTATAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 7 0.21
32 15 0.45
33 11 0.33
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (31 bp):
AAATATTATATATTACATAAAATTTAATAAT
Found at i:90799 original size:2 final size:2
Alignment explanation
Indices: 90794--90846 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
90784 TACACACACG
90794 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
90836 TA TA TT TA TA T
1 TA TA TA TA TA T
90847 TTCAATGTCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:91014 original size:20 final size:21
Alignment explanation
Indices: 90973--91012 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
90963 AATAATAAAT
*
90973 TAAATTCATGAGATTTTTTTA
1 TAAATTAATGAGATTTTTTTA
90994 TAAATTAATGAGATTTTTT
1 TAAATTAATGAGATTTTTT
91013 ATTATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.53
Consensus pattern (21 bp):
TAAATTAATGAGATTTTTTTA
Found at i:91906 original size:23 final size:21
Alignment explanation
Indices: 91859--91910 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
91849 TTATTCTTTT
91859 AAAT-TAAATAACATGTTCAC
1 AAATATAAATAACATGTTCAC
* *
91879 AAATACTAAATAAATATGTTCAT
1 AAATA-TAAAT-AACATGTTCAC
*
91902 GAATATAAA
1 AAATATAAA
91911 ATCAAAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
22 9 0.35
23 13 0.50
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.31
Consensus pattern (21 bp):
AAATATAAATAACATGTTCAC
Found at i:95066 original size:20 final size:19
Alignment explanation
Indices: 95041--95124 Score: 90
Period size: 19 Copynumber: 4.7 Consensus size: 19
95031 ATTCAACGAT
95041 TTGTATCGATACATAAAGTA
1 TTGTATCGATACAT-AAGTA
*
95061 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTA
95080 TTGTATCGATAC---A--A
1 TTGTATCGATACATAAGTA
* *
95094 -TGTATAGATACATAAGTT
1 TTGTATCGATACATAAGTA
95112 TTGTATCGATACA
1 TTGTATCGATACA
95125 ATTTAAGCTA
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
13 10 0.19
16 2 0.04
19 27 0.51
20 14 0.26
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:95104 original size:32 final size:32
Alignment explanation
Indices: 95062--95126 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
95052 CATAAAGTAT
*
95062 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATAGATACATAAGTGTTGTATCGATACAA
*
95094 TGTATAGATACATAAGTTTTGTATCGATACAA
1 TGTATAGATACATAAGTGTTGTATCGATACAA
95126 T
1 T
95127 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATAGATACATAAGTGTTGTATCGATACAA
Found at i:95185 original size:13 final size:13
Alignment explanation
Indices: 95167--95191 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95157 ATTACTCAAA
95167 TGTATCGATACAT
1 TGTATCGATACAT
95180 TGTATCGATACA
1 TGTATCGATACA
95192 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:103038 original size:52 final size:52
Alignment explanation
Indices: 102968--103088 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
102958 GAAAATTTAT
*
102968 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* *
103020 CTGCGTGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
103072 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
103089 AAGATCCGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:103101 original size:52 final size:52
Alignment explanation
Indices: 102968--103108 Score: 187
Period size: 52 Copynumber: 2.7 Consensus size: 52
102958 GAAAATTTAT
*
102968 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGC
* *** *
103020 CTGCGTGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
*
103072 CTGCATGTATCGATACA-AAGATCCGTGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
103109 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 74 0.95
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:103115 original size:13 final size:13
Alignment explanation
Indices: 103097--103121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103087 CAAAGATCCG
103097 TGTATCGATACAA
1 TGTATCGATACAA
103110 TGTATCGATACA
1 TGTATCGATACA
103122 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:103205 original size:13 final size:13
Alignment explanation
Indices: 103187--103211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103177 CAAAAAAATA
103187 TGTATCGATACAT
1 TGTATCGATACAT
103200 TGTATCGATACA
1 TGTATCGATACA
103212 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:103207 original size:33 final size:33
Alignment explanation
Indices: 103165--103231 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
103155 AGTAGCTTAA
103165 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
103198 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
103231 A
1 A
103232 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:107876 original size:28 final size:28
Alignment explanation
Indices: 107795--107876 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
107785 TTTTGGAGAT
*
107795 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
107823 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
107851 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
107877 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:108022 original size:51 final size:51
Alignment explanation
Indices: 107859--108029 Score: 189
Period size: 51 Copynumber: 3.3 Consensus size: 51
107849 GAAATAACGA
* * *
107859 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
** * * * * * *
107911 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGA
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
107964 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
108015 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
108030 TCAGAAATAA
Statistics
Matches: 95, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
51 38 0.40
52 16 0.17
53 31 0.33
54 10 0.11
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:108075 original size:27 final size:28
Alignment explanation
Indices: 108012--108087 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
108002 AAAATAAAGT
*
108012 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
108040 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
108067 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
108088 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:110585 original size:20 final size:20
Alignment explanation
Indices: 110530--110585 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
110520 TAAAATTTCC
* *
110530 AAATGTATCGATACAAAGAT
1 AAATGTATCGATACATAGAA
**
110550 CCATGTATCGATACATAGAA
1 AAATGTATCGATACATAGAA
110570 AAATGTATCGATACAT
1 AAATGTATCGATACAT
110586 TTCCTTGGCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (20 bp):
AAATGTATCGATACATAGAA
Found at i:110628 original size:19 final size:18
Alignment explanation
Indices: 110604--110671 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
110594 CAGTAGCTAA
110604 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
110623 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
110638 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
110655 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
110672 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:110644 original size:13 final size:13
Alignment explanation
Indices: 110626--110650 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110616 ACAATACTTA
110626 TGTATCGATACAT
1 TGTATCGATACAT
110639 TGTATCGATACA
1 TGTATCGATACA
110651 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:110648 original size:32 final size:32
Alignment explanation
Indices: 110607--110669 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
110597 TAGCTAATTA
*
110607 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
110639 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
110670 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:116832 original size:15 final size:14
Alignment explanation
Indices: 116812--116899 Score: 72
Period size: 15 Copynumber: 6.0 Consensus size: 14
116802 CTCCACAAAT
* *
116812 AAAAAAAA-AGAAG
1 AAAAAAAACAAAAA
116825 AAAAAAAACAAAAA
1 AAAAAAAACAAAAA
116839 AACAAAAAACAAAAA
1 AA-AAAAAACAAAAA
116854 ACCAAAAAAA-AAAACA
1 A--AAAAAAACAAAA-A
116870 AAATAAAAACAAAAA
1 AAA-AAAAACAAAAA
* *
116885 CAACAACAACAAAAA
1 -AAAAAAAACAAAAA
116900 GGGTCCGGAT
Statistics
Matches: 63, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
13 8 0.13
14 7 0.11
15 33 0.52
16 14 0.22
17 1 0.02
ACGTcount: A:0.84, C:0.12, G:0.02, T:0.01
Consensus pattern (14 bp):
AAAAAAAACAAAAA
Found at i:116837 original size:8 final size:8
Alignment explanation
Indices: 116826--116890 Score: 73
Period size: 8 Copynumber: 8.2 Consensus size: 8
116816 AAAAAGAAGA
116826 AAAAAAAC
1 AAAAAAAC
116834 AAAAAAAC
1 AAAAAAAC
116842 -AAAAAAC
1 AAAAAAAC
*
116849 AAAAAACC
1 AAAAAAAC
116857 AAAAAAA-
1 AAAAAAAC
116864 AAAACAAA-
1 AAAA-AAAC
*
116872 ATAAAAAC
1 AAAAAAAC
116880 AAAAACAAC
1 AAAAA-AAC
116889 AA
1 AA
116891 CAACAAAAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
7 14 0.29
8 30 0.61
9 5 0.10
ACGTcount: A:0.85, C:0.14, G:0.00, T:0.02
Consensus pattern (8 bp):
AAAAAAAC
Found at i:116845 original size:6 final size:6
Alignment explanation
Indices: 116836--116893 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
116826 AAAAAAACAA
* *
116836 AAAAAC AAAAAAC AAAAAACC AAAAAA AAAAAC -AAAAT AAAAAC AAAAAC
1 AAAAAC -AAAAAC -AAAAA-C AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC
*
116886 AACAAC AA
1 AAAAAC AA
116894 CAAAAAGGGT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
5 4 0.09
6 22 0.50
7 17 0.39
8 1 0.02
ACGTcount: A:0.83, C:0.16, G:0.00, T:0.02
Consensus pattern (6 bp):
AAAAAC
Found at i:116861 original size:31 final size:31
Alignment explanation
Indices: 116808--116884 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
116798 CGTCCTCCAC
*
116808 AAATAAAAA-AAAAGAA-GAAAAAAAACAAA-A
1 AAATAAAAACAAAA-AACCAAAAAAAA-AAACA
*
116838 AAACAAAAAACAAAAAACCAAAAAAAAAAACA
1 AAA-TAAAAACAAAAAACCAAAAAAAAAAACA
116870 AAATAAAAACAAAAA
1 AAATAAAAACAAAAA
116885 CAACAACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
30 3 0.08
31 21 0.52
32 16 0.40
ACGTcount: A:0.86, C:0.09, G:0.03, T:0.03
Consensus pattern (31 bp):
AAATAAAAACAAAAAACCAAAAAAAAAAACA
Found at i:116883 original size:20 final size:19
Alignment explanation
Indices: 116808--116890 Score: 69
Period size: 20 Copynumber: 4.1 Consensus size: 19
116798 CGTCCTCCAC
*
116808 AAATAAAAAAAAAGAAGAAAAA
1 AAAT-AAAAAAAA-AA-AAACA
*
116830 AAACAAAAAAACAAAAAACA
1 AAATAAAAAAA-AAAAAACA
116850 AAA-AACCAAAAAAAAAAACA
1 AAATAA--AAAAAAAAAAACA
*
116870 AAATAAAAACAAAAACAACA
1 AAATAAAAA-AAAAAAAACA
116890 A
1 A
116891 CAACAAAAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
19 5 0.09
20 28 0.53
21 16 0.30
22 4 0.08
ACGTcount: A:0.84, C:0.11, G:0.02, T:0.02
Consensus pattern (19 bp):
AAATAAAAAAAAAAAAACA
Found at i:116884 original size:7 final size:7
Alignment explanation
Indices: 116827--116872 Score: 67
Period size: 7 Copynumber: 6.6 Consensus size: 7
116817 AAAAGAAGAA
116827 AAAAAAC
1 AAAAAAC
116834 AAAAAAAC
1 -AAAAAAC
116842 AAAAAAC
1 AAAAAAC
116849 AAAAAAC
1 AAAAAAC
*
116856 CAAAAA-
1 AAAAAAC
116862 AAAAAAC
1 AAAAAAC
116869 AAAA
1 AAAA
116873 TAAAAACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
6 5 0.14
7 23 0.66
8 7 0.20
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:116892 original size:12 final size:11
Alignment explanation
Indices: 116826--116899 Score: 64
Period size: 11 Copynumber: 6.6 Consensus size: 11
116816 AAAAAGAAGA
*
116826 AAAAAAACAAA
1 AAAAAAACAAC
*
116837 AAAACAAAAAAC
1 AAAA-AAACAAC
*
116849 AAAAAACCAA-
1 AAAAAAACAAC
116859 AAAAAAA-AAC
1 AAAAAAACAAC
116869 AAAATAAA-AAC
1 AAAA-AAACAAC
116880 AAAAACAACAAC
1 AAAAA-AACAAC
116892 AACAAAAA
1 AA-AAAAA
116900 GGGTCCGGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
9 2 0.04
10 11 0.21
11 20 0.38
12 16 0.31
13 3 0.06
ACGTcount: A:0.84, C:0.15, G:0.00, T:0.01
Consensus pattern (11 bp):
AAAAAAACAAC
Found at i:116899 original size:1 final size:1
Alignment explanation
Indices: 116812--116884 Score: 56
Period size: 1 Copynumber: 73.0 Consensus size: 1
116802 CTCCACAAAT
* * * * * ** * *
116812 AAAAAAAAAGAAGAAAAAAAACAAAAAAACAAAAAACAAAAAACCAAAAAAAAAAACAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
116877 AACAAAAA
1 AAAAAAAA
116885 CAACAACAAC
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.86, C:0.10, G:0.03, T:0.01
Consensus pattern (1 bp):
A
Found at i:118378 original size:29 final size:29
Alignment explanation
Indices: 118336--118540 Score: 227
Period size: 29 Copynumber: 7.1 Consensus size: 29
118326 TTCCTCACCC
* *
118336 TTCAAAAGCCCACAAGTCAGTGGTATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
118365 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-CCTT
* *
118395 TTCCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
*
118424 TTCCAAAGCCCACAAGTCAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-CCTT
* ** *
118454 TTCCAAAGCCCACAAGTCAGTGATATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
* *
118483 TTC-AAAGCCCACAAATTAGTGGCAACC--
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTT
* * * *
118510 TTAAAAAACCCACAAGCCAGTGGTACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCTT
118539 TT
1 TT
118541 TTGGAAGCCC
Statistics
Matches: 151, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.03
28 31 0.21
29 62 0.41
30 53 0.35
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (29 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCTT
Found at i:118403 original size:30 final size:29
Alignment explanation
Indices: 118340--118511 Score: 229
Period size: 29 Copynumber: 5.9 Consensus size: 29
118330 TCACCCTTCA
* * *
118340 AAAGCCCACAAGTCAGTGGTATCTTTTCA
1 AAAGCCCACAAGTCAGTGGCACCTTTTCC
118369 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCC
*
118399 AAAGCCCACAAGTCAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTCC
118428 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTCC
** *
118458 AAAGCCCACAAGTCAGTGATATCTTTT-C
1 AAAGCCCACAAGTCAGTGGCACCTTTTCC
* *
118486 AAAGCCCACAAATTAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGC-ACCTT
118512 AAAAAACCCA
Statistics
Matches: 127, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
28 17 0.13
29 57 0.45
30 53 0.42
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCACCTTTTCC
Found at i:118410 original size:59 final size:58
Alignment explanation
Indices: 118340--118511 Score: 281
Period size: 59 Copynumber: 2.9 Consensus size: 58
118330 TCACCCTTCA
118340 AAAGCCCACAAGTCAGTGGTATCTTTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGTATCTTTTC-AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
118399 AAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGTATCTTTT-CAAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * * *
118458 AAAGCCCACAAGTCAGTGATATCTTTTCAAAGCCCACAAATTAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGTATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTT
118512 AAAAAACCCA
Statistics
Matches: 106, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
58 24 0.23
59 81 0.76
60 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23
Consensus pattern (58 bp):
AAAGCCCACAAGTCAGTGGTATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTCC
Found at i:118623 original size:34 final size:34
Alignment explanation
Indices: 118545--118702 Score: 194
Period size: 34 Copynumber: 4.6 Consensus size: 34
118535 CCTTTTTTGG
* * *
118545 AAGCCCACAA-TTTCGTGGCAC-CGTTTTTCTTTTT
1 AAGCCCACAACTCT-GTGGCACTC-TTTTTCCTTCT
*
118579 GAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
*
118614 AAGCCCACAACTCTATGGCACTCTTTTTCCTTCT
1 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
*
118648 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
* * *
118682 AAGTCCACAAGTCCGTGGCAC
1 AAGCCCACAACTCTGTGGCAC
118703 CCTTATCTTT
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
34 83 0.73
35 27 0.24
36 3 0.03
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.34
Consensus pattern (34 bp):
AAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT
Found at i:118772 original size:49 final size:49
Alignment explanation
Indices: 118697--118958 Score: 371
Period size: 49 Copynumber: 5.3 Consensus size: 49
118687 CACAAGTCCG
* * *
118697 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
** *
118746 TAACACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * * * *
118795 TAGCACCTTCATCTTTATGTCCAATATAGCTGGCCTTGAATCAGCATAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* * *
118844 TGGCACCCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
118893 TGGCACCCTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
1 TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
* *
118942 TGGTACCTTCATCTTTA
1 TGGCACCCTCATCTTTA
118959 TTTCCAATAG
Statistics
Matches: 188, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 188 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (49 bp):
TGGCACCCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
Done.