Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold863
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49693
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Found at i:1355 original size:21 final size:19
Alignment explanation
Indices: 1312--1383 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 19
1302 GGGCTAATTA
1312 ATCGATACAATTCTAGATGT
1 ATCGATAC-ATTCTAGATGT
*
1332 ATCGATACATTCTGGAATTGT
1 ATCGATACATTCTAG-A-TGT
1353 ATCGATACATTCCTATG-TGT
1 ATCGATACATT-CTA-GATGT
1373 ATCGATACATT
1 ATCGATACATT
1384 TGAAAGGTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
19 6 0.13
20 23 0.50
21 14 0.30
22 2 0.04
23 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (19 bp):
ATCGATACATTCTAGATGT
Found at i:1472 original size:19 final size:20
Alignment explanation
Indices: 1429--1482 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
1419 CTTTCACATA
1429 ATGTATCGATACATTGCAAG
1 ATGTATCGATACATTGCAAG
* *
1449 GTGTATCGA-ACATTGCAAT
1 ATGTATCGATACATTGCAAG
*
1468 ATGTATCAATACATT
1 ATGTATCGATACATT
1483 TCATGTGCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAG
Found at i:10752 original size:51 final size:51
Alignment explanation
Indices: 10597--10768 Score: 193
Period size: 51 Copynumber: 3.4 Consensus size: 51
10587 AAAATAAAAT
* * * *
10597 CGGGGTTGGAGTATCCCCTATTATGAGAAATCGATGAC-TTAGAAATAAGGC
1 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATG-CTTTAGAAATAAGGC
* * ** * * *
10648 CGGGGTTGAAGTATCTCCGATTGTGAGAAATTAATATTTTGGAGATAAAGC
1 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATGCTTTAGAAATAAGGC
* * * *
10699 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGCTTTAAAAATTAGGC
1 CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATGCTTTAGAAATAAGGC
10750 CGGGGTTGAAGTATCCCCG
1 CGGGGTTGAAGTATCCCCG
10769 CGAAAATAAC
Statistics
Matches: 97, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
51 97 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (51 bp):
CGGGGTTGAAGTATCCCCGATTGTGAGAAATCAATGCTTTAGAAATAAGGC
Found at i:10943 original size:29 final size:28
Alignment explanation
Indices: 10908--10982 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
10898 GAAATAAAAT
**
10908 CGGGGTTGGAGTATCCCCTTTGAAAATAA
1 CGGGGTTGGAGTATCCCCGATG-AAATAA
*
10937 CGGGGTTGGAGTATCCCCGATGAAATAC
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
10965 CGAGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
10983 AACTGTGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 22 0.52
29 20 0.48
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:10982 original size:159 final size:158
Alignment explanation
Indices: 10749--11085 Score: 489
Period size: 159 Copynumber: 2.1 Consensus size: 158
10739 AAAAATTAGG
* *
10749 CCGGGGTTGAAGTATCCCCGCGAAAATAACGAGGTTGGAGTATCCCTAATGAAATACCAGGGTTG
1 CCGGGGTTGGAGTATCCCCGCGAAAATAACGAGGTTGGAGTATCCCCAATGAAATACCAGGGTTG
*
10814 GAGTATCCCCAA-TAGTGAAAAATTAGTGTTTTGGAAATAAAATTGGAGTTGAAGTATCTCCGAT
66 GAGTATCCCCAACT-GTGAAAAATTAGTGTTTTGGAAATAAAATCGGAGTTGAAGTATCTCCGAT
* *
10878 TGTAGAAAATTGATGTTTTAGAAATAAAA
130 TATAGAAAATTGATGTTGTAGAAATAAAA
* ** * *
10907 TCGGGGTTGGAGTATCCCCTTTGAAAATAACGGGGTTGGAGTATCCCCGATGAAATACC-GAGGT
1 CCGGGGTTGGAGTATCCCC-GCGAAAATAACGAGGTTGGAGTATCCCCAATGAAATACCAG-GGT
* * *
10971 TGGAGTATCCCCAACTGTGAAAAATTGGTGTTTTGGACATAAAATCGGAGTTGGAGTATCTCCGA
64 TGGAGTATCCCCAACTGTGAAAAATTAGTGTTTTGGAAATAAAATCGGAGTTGAAGTATCTCCGA
* *
11036 TTATGGAAAATTGATGTTGTGGAAATAAAA
129 TTATAGAAAATTGATGTTGTAGAAATAAAA
*
11066 CCGAGGTTGGAGTATCCCCG
1 CCGGGGTTGGAGTATCCCCG
11086 AGATGAAAAA
Statistics
Matches: 158, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
158 18 0.11
159 139 0.88
160 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (158 bp):
CCGGGGTTGGAGTATCCCCGCGAAAATAACGAGGTTGGAGTATCCCCAATGAAATACCAGGGTTG
GAGTATCCCCAACTGTGAAAAATTAGTGTTTTGGAAATAAAATCGGAGTTGAAGTATCTCCGATT
ATAGAAAATTGATGTTGTAGAAATAAAA
Found at i:21036 original size:1 final size:1
Alignment explanation
Indices: 21026--21123 Score: 88
Period size: 1 Copynumber: 98.0 Consensus size: 1
21016 TGGCAATTGG
* * * ** * * *
21026 AAAAAGAAAAAAAACAAAACAAAAAAAAGGAAAAAGAAAAAAAAAAAAAAACAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * *
21091 AAGGAAAAAGAAAAAAAAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21124 GTGAAGATTT
Statistics
Matches: 77, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.88, C:0.05, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:21076 original size:37 final size:38
Alignment explanation
Indices: 21026--21113 Score: 151
Period size: 39 Copynumber: 2.3 Consensus size: 38
21016 TGGCAATTGG
*
21026 AAAAAGAAAAAAAACAAAAC-AAAAAAAAGGAAAAAGA
1 AAAAAAAAAAAAAACAAAACAAAAAAAAAGGAAAAAGA
21063 AAAAAAAAAAAAAACAAAACAAAAAAAAAAGGAAAAAGA
1 AAAAAAAAAAAAAACAAAAC-AAAAAAAAAGGAAAAAGA
21102 AAAAAAAAAAAA
1 AAAAAAAAAAAA
21114 CAAAAAAAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
37 19 0.40
39 29 0.60
ACGTcount: A:0.88, C:0.05, G:0.08, T:0.00
Consensus pattern (38 bp):
AAAAAAAAAAAAAACAAAACAAAAAAAAAGGAAAAAGA
Found at i:21114 original size:37 final size:37
Alignment explanation
Indices: 21025--21123 Score: 150
Period size: 37 Copynumber: 2.7 Consensus size: 37
21015 ATGGCAATTG
21025 GAAAAAGAAAAAAAACAAAAC--AAAAAAAAGGAAAAA
1 GAAAAA-AAAAAAAACAAAACAAAAAAAAAAGGAAAAA
21061 GAAAAAAAAAAAAAAACAAAACAAAAAAAAAAGGAAAAA
1 G--AAAAAAAAAAAAACAAAACAAAAAAAAAAGGAAAAA
21100 GAAAAAAAAAAAAACAAAA-AAAAA
1 GAAAAAAAAAAAAACAAAACAAAAA
21124 GTGAAGATTT
Statistics
Matches: 59, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
36 6 0.10
37 32 0.54
38 5 0.08
39 16 0.27
ACGTcount: A:0.87, C:0.05, G:0.08, T:0.00
Consensus pattern (37 bp):
GAAAAAAAAAAAAACAAAACAAAAAAAAAAGGAAAAA
Found at i:21121 original size:32 final size:32
Alignment explanation
Indices: 21024--21123 Score: 128
Period size: 33 Copynumber: 3.0 Consensus size: 32
21014 CATGGCAATT
*
21024 GGAAAAAGAAAAAAAACAAAACAAAAAAAAGGAAAA
1 GGAAAAAGAAAAAAAA-AAAA-ACAAAAAA--AAAA
* *
21060 AGAAAAAAAAAAAAAAACAAAACAAAAAAAAAA
1 GGAAAAAGAAAAAAAAA-AAAACAAAAAAAAAA
21093 GGAAAAAGAAAAAAAAAAAAACAAAAAAAAA
1 GGAAAAAGAAAAAAAAAAAAACAAAAAAAAA
21124 GTGAAGATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
32 14 0.24
33 19 0.33
35 8 0.14
36 17 0.29
ACGTcount: A:0.86, C:0.05, G:0.09, T:0.00
Consensus pattern (32 bp):
GGAAAAAGAAAAAAAAAAAAACAAAAAAAAAA
Found at i:23594 original size:49 final size:47
Alignment explanation
Indices: 23538--23709 Score: 173
Period size: 49 Copynumber: 3.7 Consensus size: 47
23528 AAAATGCCTT
*
23538 AATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAATCCAG
1 AATGTATCGATACAATG-AAAATGTATCGATACATCTGGGTAAA-CCAG
* *
23587 AATGTATCGATACAATGAGCAATGTATCGAT--A------T-AACAAG
1 AATGTATCGATACAATGA-AAATGTATCGATACATCTGGGTAAACCAG
*
23626 CAATGTATCGAAACAATGCAAAATGTATCGATACATCTGGGTAAACCCAG
1 -AATGTATCGATACAATG-AAAATGTATCGATACATCTGGGTAAA-CCAG
*
23676 AATGTATCGATACAATGAACAATATATCGATACA
1 AATGTATCGATACAATGAA-AATGTATCGATACA
23710 AATTGTGAAA
Statistics
Matches: 101, Mismatches: 8, Indels: 28
0.74 0.06 0.20
Matches are distributed among these distances:
39 3 0.03
40 29 0.29
41 2 0.02
42 1 0.01
47 1 0.01
48 4 0.04
49 58 0.57
50 3 0.03
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (47 bp):
AATGTATCGATACAATGAAAATGTATCGATACATCTGGGTAAACCAG
Found at i:23612 original size:20 final size:20
Alignment explanation
Indices: 23587--23660 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
23577 GTAAATCCAG
23587 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGC
* **
23607 AATGTATCGATATAACAAGC
1 AATGTATCGATACAATGAGC
* *
23627 AATGTATCGAAACAATGCA-A
1 AATGTATCGATACAATG-AGC
23647 AATGTATCGATACA
1 AATGTATCGATACA
23661 TCTGGGTAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.98
21 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.24
Consensus pattern (20 bp):
AATGTATCGATACAATGAGC
Found at i:23689 original size:89 final size:89
Alignment explanation
Indices: 23538--23707 Score: 286
Period size: 89 Copynumber: 1.9 Consensus size: 89
23528 AAAATGCCTT
* * * *
23538 AATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAATCCAGAATGTATCGATACAAT
1 AATGTATCGAAACAATGCAAAATGTATCGATACATCTGGGTAAACCCAGAATGTATCGATACAAT
* *
23603 GAGCAATGTATCGATATAACAAGC
66 GAACAATATATCGATATAACAAGC
23627 AATGTATCGAAACAATGCAAAATGTATCGATACATCTGGGTAAACCCAGAATGTATCGATACAAT
1 AATGTATCGAAACAATGCAAAATGTATCGATACATCTGGGTAAACCCAGAATGTATCGATACAAT
23692 GAACAATATATCGATA
66 GAACAATATATCGATA
23708 CAAATTGTGA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 75 1.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.26
Consensus pattern (89 bp):
AATGTATCGAAACAATGCAAAATGTATCGATACATCTGGGTAAACCCAGAATGTATCGATACAAT
GAACAATATATCGATATAACAAGC
Found at i:24332 original size:41 final size:41
Alignment explanation
Indices: 24232--24333 Score: 136
Period size: 41 Copynumber: 2.5 Consensus size: 41
24222 GTCCCACTTT
* * *
24232 TTGAGGACAAAGG-AAAAGAGAATGAAATAGGTCTTGCTTC
1 TTGAGGACAAAGGAAAAAGAAAAGGAAATAGGTCCTGCTTC
*
24272 TTGAGGACAAAGGAAAAAAGAAAAGGAAA-ATGTCCTGCTTC
1 TTGAGGACAAAGG-AAAAAGAAAAGGAAATAGGTCCTGCTTC
24313 TTGAGGACAAAGTGAAAAAGA
1 TTGAGGACAAAG-GAAAAAGA
24334 GTACGTTCTG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
40 13 0.24
41 29 0.53
42 13 0.24
ACGTcount: A:0.45, C:0.10, G:0.26, T:0.19
Consensus pattern (41 bp):
TTGAGGACAAAGGAAAAAGAAAAGGAAATAGGTCCTGCTTC
Found at i:24372 original size:42 final size:42
Alignment explanation
Indices: 24321--24734 Score: 186
Period size: 45 Copynumber: 9.8 Consensus size: 42
24311 TCTTGAGGAC
* *
24321 AAAGTGAAAAAGAGTACGTTCTGCT-TTTCGAGGACAAAGGAAA
1 AAAG-GAAAAAGAGTGCGTCCTGCTCTTT-GAGGACAAAGGAAA
* * * * *
24364 AAAGGAAAACGAAATGCGTCCTGCTTTTTGAGGAGAAAAG-AA
1 AAAGGAAAAAG-AGTGCGTCCTGCTCTTTGAGGACAAAGGAAA
* * *
24406 AGAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGATAAAAGGGAAA
1 AAAGGAAAA-AGAGTGCGTCCTGCTCTTTGAGGA-CAAA-GGAAA
* * * *
24451 AGAAGG-GAATGAAGTGTGTCCTGCTCTTTGAGGACAAAGGGAA
1 A-AAGGAAAAAG-AGTGCGTCCTGCTCTTTGAGGACAAAGGAAA
* * *
24494 AAAGG--AAA-AG-GCGTCCTACTCTTTGAAGATAAAAGGGAAA
1 AAAGGAAAAAGAGTGCGTCCTGCTCTTTGAGGA-CAAA-GGAAA
* *
24534 AGAAGGAAATGAA-A-TGTGTCTTGCTCTTTGAGGACAAAAGGGAAAA
1 A-AAGGAAA--AAGAGTGCGTCCTGCTCTTTGAGGAC-AAA-GG-AAA
** * *
24580 GAAAGGAATGA-AGTGTGTCCTGCTCTTT-ATGGACAAAGGAGA
1 -AAAGGAAAAAGAGTGCGTCCTGCTCTTTGA-GGACAAAGGAAA
* *
24622 AAAGG--AAA-AG-GCGTCATGCTCTTTGAAGACAAAAGGGAAA
1 AAAGGAAAAAGAGTGCGTCCTGCTCTTTGAGGAC-AAA-GGAAA
** * ** * *
24662 CTCATGAAATGAA-A-TATGTCCTGCTCTTTGAGGATAAAGGAGA
1 -AAAGGAAA--AAGAGTGCGTCCTGCTCTTTGAGGACAAAGGAAA
24705 AAAGG-AAAA-AGT--GTCCTGCTCTTTGAGGAC
1 AAAGGAAAAAGAGTGCGTCCTGCTCTTTGAGGAC
24735 TAAAAAGTGC
Statistics
Matches: 286, Mismatches: 54, Indels: 67
0.70 0.13 0.16
Matches are distributed among these distances:
38 48 0.17
39 15 0.05
40 10 0.03
41 15 0.05
42 44 0.15
43 39 0.14
44 16 0.06
45 86 0.30
46 12 0.04
47 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.28, T:0.21
Consensus pattern (42 bp):
AAAGGAAAAAGAGTGCGTCCTGCTCTTTGAGGACAAAGGAAA
Found at i:24472 original size:45 final size:43
Alignment explanation
Indices: 24417--24739 Score: 255
Period size: 45 Copynumber: 7.7 Consensus size: 43
24407 GAGGAAAATA
*
24417 AAGTGCGTCCTGCTCTTTGAGGATAAAAGGGAAAAGAAGGGAATG
1 AAGTGTGTCCTGCTCTTTGAGGATAAAAGGGAAAA-AA-GGAATG
*
24462 AAGTGTGTCCTGCTCTTTGAGGA-CAAAGGG-AAAAAGGAA--
1 AAGTGTGTCCTGCTCTTTGAGGATAAAAGGGAAAAAAGGAATG
* * *
24501 AAG-GCGTCCTACTCTTTGAAGATAAAAGGGAAAAGAAGGAAATG
1 AAGTGTGTCCTGCTCTTTGAGGATAAAAGGGAAAA-AAGG-AATG
* * *
24545 AAATGTGTCTTGCTCTTTGAGGACAAAAGGGAAAAGAAAGGAATG
1 AAGTGTGTCCTGCTCTTTGAGGATAAAAGGG-AAA-AAAGGAATG
* *
24590 AAGTGTGTCCTGCTCTTT-ATGGA-CAAA-GGAGAAAAGGAA--
1 AAGTGTGTCCTGCTCTTTGA-GGATAAAAGGGAAAAAAGGAATG
* * * * * * *
24629 AAG-GCGTCATGCTCTTTGAAGACAAAAGGGAAACTCATGAAATG
1 AAGTGTGTCCTGCTCTTTGAGGATAAAAGGGAAA--AAAGGAATG
* * *
24673 AAATATGTCCTGCTCTTTGAGGAT-AAA-GGAGAAAAGGAA--
1 AAGTGTGTCCTGCTCTTTGAGGATAAAAGGGAAAAAAGGAATG
*
24712 AA-AGTGTCCTGCTCTTTGAGGACTAAAA
1 AAGTGTGTCCTGCTCTTTGAGGA-TAAAA
24740 AGTGCCACCA
Statistics
Matches: 222, Mismatches: 36, Indels: 45
0.73 0.12 0.15
Matches are distributed among these distances:
38 48 0.22
39 19 0.09
40 10 0.05
41 19 0.09
42 10 0.05
43 9 0.04
44 17 0.08
45 82 0.37
46 7 0.03
47 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (43 bp):
AAGTGTGTCCTGCTCTTTGAGGATAAAAGGGAAAAAAGGAATG
Found at i:24527 original size:83 final size:85
Alignment explanation
Indices: 24359--24579 Score: 272
Period size: 83 Copynumber: 2.6 Consensus size: 85
24349 CGAGGACAAA
* * * * *
24359 GGAAAA-AAGGAAAACGAAATGCGTCCTGCTTTTTGAGGAGAAAA--GAAAGAGGAAAATAAAGT
1 GGAAAAGAAGG-AAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGGGAAAAAGG---A-AAAGT
* *
24421 GCGTCCTGCTCTTTGAGGATAAAAG
61 GCGTCCTACTCTTTGAAGATAAAAG
* *
24446 GGAAAAGAAGGGAATGAAGTGTGTCCTGCTCTTTGAGGAC-AAAGGGAAAAAGGAAAAG-GCGTC
1 GGAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGGGAAAAAGGAAAAGTGCGTC
24509 CTACTCTTTGAAGATAAAAG
66 CTACTCTTTGAAGATAAAAG
*
24529 GGAAAAGAAGGAAATGAAATGTGTCTTGCTCTTTGAGGACAAAAGGGAAAA
1 GGAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGGGAAAA
24580 GAAAGGAATG
Statistics
Matches: 118, Mismatches: 12, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
83 60 0.51
84 14 0.12
85 1 0.01
86 3 0.03
87 29 0.25
88 11 0.09
ACGTcount: A:0.41, C:0.11, G:0.29, T:0.19
Consensus pattern (85 bp):
GGAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAAGGGAAAAAGGAAAAGTGCGTC
CTACTCTTTGAAGATAAAAG
Found at i:24577 original size:128 final size:126
Alignment explanation
Indices: 24423--24734 Score: 413
Period size: 128 Copynumber: 2.5 Consensus size: 126
24413 AATAAAGTGC
24423 GTCCTGCTCTTTGAGGATAAAAGGGAAAAGAAGGGAATGAAGTGTGTCCTGCTCTTTGAGGACAA
1 GTCCTGCTCTTTGAGGA-AAAAGGGAAAAGAA-GGAATGAAGTGTGTCCTGCTCTTTGAGGACAA
* * *
24488 AGG-GAAAAAGGAAAAGGCGTCCTACTCTTTGAAGATAAAAGGGAAAAGAAGGAAATGAAATGT
64 AGGAG-AAAAGGAAAAGGCGTCATACTCTTTGAAGACAAAAGGGAAAAGAAGGAAATGAAATAT
*
24551 GTCTTGCTCTTTGAGGACAAAAGGGAAAAGAAAGGAATGAAGTGTGTCCTGCTCTTT-ATGGACA
1 GTCCTGCTCTTTGAGGA-AAAAGGGAAAAG-AAGGAATGAAGTGTGTCCTGCTCTTTGA-GGACA
* *** *
24615 AAGGAGAAAAGGAAAAGGCGTCATGCTCTTTGAAGACAAAAGGGAAACTCATGAAATGAAATAT
63 AAGGAGAAAAGGAAAAGGCGTCATACTCTTTGAAGACAAAAGGGAAAAGAAGGAAATGAAATAT
* * *
24679 GTCCTGCTCTTTGAGGATAAA-GGAGAA-AAGGAA--AA-AGTGTCCTGCTCTTTGAGGAC
1 GTCCTGCTCTTTGAGGAAAAAGGGAAAAGAAGGAATGAAGTGTGTCCTGCTCTTTGAGGAC
24735 TAAAAAGTGC
Statistics
Matches: 166, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
121 18 0.11
122 3 0.02
124 6 0.04
126 5 0.03
127 4 0.02
128 127 0.77
129 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.22
Consensus pattern (126 bp):
GTCCTGCTCTTTGAGGAAAAAGGGAAAAGAAGGAATGAAGTGTGTCCTGCTCTTTGAGGACAAAG
GAGAAAAGGAAAAGGCGTCATACTCTTTGAAGACAAAAGGGAAAAGAAGGAAATGAAATAT
Found at i:24642 original size:83 final size:83
Alignment explanation
Indices: 24555--24739 Score: 237
Period size: 83 Copynumber: 2.2 Consensus size: 83
24545 AAATGTGTCT
* * *
24555 TGCTCTTTGAGGACAAAAGGGAAAAGAAAGGAATGAAGTGTGTCCTGCTCTTT-ATGGACAAAGG
1 TGCTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAATATGTCCTGCTCTTTGA-GGACAAAGG
*
24619 AGAAAAGGAAAAGGCGTCA
65 AGAAAAGGAAAAAGCGTCA
* *** * *
24638 TGCTCTTTGAAGACAAAAGGGAAACTCATGAAATGAAATATGTCCTGCTCTTTGAGGATAAAGGA
1 TGCTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAATATGTCCTGCTCTTTGAGGACAAAGGA
* *
24703 GAAAAGGAAAAAGTGTCC
66 GAAAAGGAAAAAGCGTCA
24721 TGCTCTTTGAGGACTAAAA
1 TGCTCTTTGAGGAC-AAAA
24740 AGTGCCACCA
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
83 82 0.94
84 5 0.06
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.22
Consensus pattern (83 bp):
TGCTCTTTGAGGACAAAAGGGAAAAGAAAGAAATGAAATATGTCCTGCTCTTTGAGGACAAAGGA
GAAAAGGAAAAAGCGTCA
Found at i:24806 original size:61 final size:60
Alignment explanation
Indices: 24718--25069 Score: 416
Period size: 61 Copynumber: 5.9 Consensus size: 60
24708 GGAAAAAGTG
* *
24718 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCA
* *
24779 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAA-AGAAA-GCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGA-AAAGGCA
* * * * * * * *
24840 TCTTGCTCTTCGAGGCCTGGAAGGTGCCACCAACTCGAGTGGTCTTTAAAAAGAGAAA-GCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGA-AAAGGCA
* *
24901 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
* *
24956 TCCTGCTCTTTGAAGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCA
25017 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
25070 GTGTCCTGCT
Statistics
Matches: 255, Mismatches: 24, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
54 3 0.01
55 42 0.16
56 6 0.02
60 5 0.02
61 169 0.66
62 30 0.12
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCA
Found at i:24980 original size:55 final size:55
Alignment explanation
Indices: 24901--25091 Score: 276
Period size: 55 Copynumber: 3.3 Consensus size: 55
24891 AGAGAAAGCA
24901 TCCTGCTCTTTGAGGACT-GAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTAG-AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
24956 TCCTGCTCTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* *
25017 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCG
25073 TCCTGCTCTTTGAGGACTA
1 TCCTGCTCTTTGAGGACTA
25092 AAGGGCGAAA
Statistics
Matches: 124, Mismatches: 4, Indels: 15
0.87 0.03 0.10
Matches are distributed among these distances:
55 44 0.35
56 26 0.21
60 1 0.01
61 30 0.24
62 23 0.19
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:25201 original size:61 final size:61
Alignment explanation
Indices: 25099--25336 Score: 218
Period size: 61 Copynumber: 4.1 Consensus size: 61
25089 CTAAAGGGCG
* * *
25099 AAAGGAGAGAGCGTCTTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTTTGTGGGCTTTA
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTTA
*
25160 AAAGGAGA-AGGCGTCCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTT-
1 AAAGGAGAGA-GCGTCCTGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTTA
* * **
25220 -AA--A-AG-GCATCCTGCTCTTTGAAGACTAAAAAAATGCCACCAACTTGTGTGGGCTTT-
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACT-AGGAAATGCCACCAACTTGTGTGGGCTTTA
* * * * *
25276 ----GAAAG-GCATCCTGCTCTTTGAAGACT--GAAAGGTGCTACCAACTTGTGTGGGCTTTG
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAA--TGCCACCAACTTGTGTGGGCTTTA
25332 AAAGG
1 AAAGG
25337 CGTCTTGCTC
Statistics
Matches: 154, Mismatches: 11, Indels: 25
0.81 0.06 0.13
Matches are distributed among these distances:
53 3 0.02
55 42 0.27
56 50 0.32
57 1 0.01
59 2 0.01
60 2 0.01
61 54 0.35
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (61 bp):
AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:25236 original size:55 final size:55
Alignment explanation
Indices: 25115--25357 Score: 265
Period size: 55 Copynumber: 4.3 Consensus size: 55
25105 GAGAGCGTCT
* * *
25115 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGGAGAAGGCGTCC
1 TGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCATCC
*
25176 TGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
* ** *
25231 TGCTCTTTGAAGACTAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACT-AGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
* * * * *
25287 TGCTCTTTGAAGACT--GAAAGGTGCTACCAACTTGTGTGGGCTTTGAAAGGCGTCT
1 TGCTCTTTGAGGACTAGGAAA--TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
*
25342 TGCTCTCTGAGGACTA
1 TGCTCTTTGAGGACTA
25358 AAGGGTGAAA
Statistics
Matches: 163, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.02
55 66 0.40
56 52 0.32
58 1 0.01
61 41 0.25
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (55 bp):
TGCTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
Found at i:25268 original size:211 final size:207
Alignment explanation
Indices: 24904--25307 Score: 553
Period size: 211 Copynumber: 1.9 Consensus size: 207
24894 GAAAGCATCC
24904 TGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
* *
24969 AGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTCCTGCTCTTTGAGGAC
66 AGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----A-AAAAGGCATCCTGCTCTTTGAAGAC
* * ** *
25034 TAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACT-AAAGGGC
126 TAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAAGACTGAAAGGGC
25098 GAAAGGAGAGAGCGTCT
191 GAAAGGAGAGAGCGTCT
* * *
25115 TGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGGAGAAGGCGTCCTGC
1 TGCTCTTTGAGGACTGA-AAAATGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTCCTGC
* * *
25179 TCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTT-AAAAGGCATCCTGCTCTTTGAAG
59 TCTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGGCATCCTGCTCTTTGAAG
*
25243 ACTAAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAAGACTGAAAGG
124 ACTAAAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAAGACTGAAAGG
25308 TGCTACCAAC
Statistics
Matches: 171, Mismatches: 14, Indels: 15
0.86 0.07 0.08
Matches are distributed among these distances:
210 1 0.01
211 113 0.66
212 5 0.03
216 2 0.01
217 50 0.29
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (207 bp):
TGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
AGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGGCATCCTGCTCTTTGAAGACTAAAA
AAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAAGACTGAAAGGGCGAAAG
GAGAGAGCGTCT
Found at i:25421 original size:266 final size:268
Alignment explanation
Indices: 24831--25461 Score: 910
Period size: 266 Copynumber: 2.3 Consensus size: 268
24821 GCTTTGCAAA
* * * * * * * *
24831 AAGAAAGCATCTTGCTCTTCGAGGCCTGGAAGGTGCCACCAACTCGAGTGGTCTTTAAAAAGAGA
1 AAGAGAGCATCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGA
* * * *
24896 AAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTG
66 AGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTG
* *
24961 CTCTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCGTCCTGCTCT
131 CTCTTTGAAGACTAAAAAATGCCACCAACTTGTGTGGGCTTT----AGAAAAGGCATCCTGCTCT
* * *
25026 TTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACT
192 TTGAAGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTCTGAGGACT
25091 AAAGGGCGAAAG
257 AAAGGGCGAAAG
* * *
25103 GAGAGAGCGTCTTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTTTGTGGGCTTTAAAAGGAG
1 AAGAGAGCATCTTGCTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAG
**
25167 AAGGCGTCCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
65 AAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
25232 GCTCTTTGAAGACTAAAAAAATGCCACCAACTTGTGTGGGCTTT-G-AAAGGCATCCTGCTCTTT
130 GCTCTTTGAAGACT-AAAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCATCCTGCTCTTT
* * * *
25295 GAAGACT-GAAAGGTGCTACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCTCTCTGAGGACTAA
194 GAAGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTCTGAGGACTAA
*
25359 AGGGTGAAAG
259 AGGGCGAAAG
*
25369 AAGAGAGCATCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
1 AAGAGAGCATCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGA
* *
25434 AGCCGTCCTGCTCTTTGAGGATTGAAAA
66 AGGCGTCCTGCTCTTTGAGGACTGAAAA
25462 GTGAAAGGAG
Statistics
Matches: 321, Mismatches: 35, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
265 3 0.01
266 141 0.44
267 23 0.07
268 1 0.00
272 122 0.38
273 31 0.10
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (268 bp):
AAGAGAGCATCTTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGA
AGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTG
CTCTTTGAAGACTAAAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCATCCTGCTCTTTGA
AGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTCTGAGGACTAAAG
GGCGAAAG
Found at i:36683 original size:13 final size:13
Alignment explanation
Indices: 36665--36690 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36655 ATAAGTGTTT
36665 GTATCGATACATA
1 GTATCGATACATA
36678 GTATCGATACATA
1 GTATCGATACATA
36691 AGTGTTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
GTATCGATACATA
Found at i:36702 original size:19 final size:19
Alignment explanation
Indices: 36643--36709 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
36633 TGTCAACGAT
36643 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
36662 TTTGTATCGATACAT-A---
1 -TTGTATCGATACATAAGTG
36678 --GTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
36695 TTGTATCGATACATA
1 TTGTATCGATACATA
36710 TGAAGCTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 12 0.29
14 1 0.02
19 14 0.34
20 14 0.34
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:36704 original size:32 final size:33
Alignment explanation
Indices: 36645--36709 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
36635 TCAACGATTT
36645 GTATCGATACATAAGTGTTTGTATCGATACATA
1 GTATCGATACATAAGTGTTTGTATCGATACATA
36678 GTATCGATACATAAGTG-TTGTATCGATACATA
1 GTATCGATACATAAGTGTTTGTATCGATACATA
36710 TGAAGCTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 15 0.47
33 17 0.53
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.35
Consensus pattern (33 bp):
GTATCGATACATAAGTGTTTGTATCGATACATA
Found at i:36769 original size:13 final size:13
Alignment explanation
Indices: 36751--36775 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36741 ATTACTCAAA
36751 TGTATCGATACAT
1 TGTATCGATACAT
36764 TGTATCGATACA
1 TGTATCGATACA
36776 CTGATCTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:36873 original size:52 final size:52
Alignment explanation
Indices: 36783--36910 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
36773 ACACTGATCT
*
36783 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATAGACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
36834 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
36886 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
36911 TCATATTTCG
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 18 0.25
52 55 0.75
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:41041 original size:13 final size:13
Alignment explanation
Indices: 41023--41050 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
41013 ATACAAAGAT
41023 CAATGTATCGATA
1 CAATGTATCGATA
41036 CAATGTATCGATA
1 CAATGTATCGATA
41049 CA
1 CA
41051 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:41130 original size:33 final size:33
Alignment explanation
Indices: 41093--41157 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
41083 TAGCTTAAAA
41093 TGTATCGATACAAAAAAATATGTATCGATACAT
1 TGTATCGATACAAAAAAATATGTATCGATACAT
* ***
41126 TGTATCGATACAACATTTTATGTATCGATACA
1 TGTATCGATACAAAAAAATATGTATCGATACA
41158 AATTGTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAAAAAAATATGTATCGATACAT
Found at i:41131 original size:13 final size:13
Alignment explanation
Indices: 41113--41137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41103 CAAAAAAATA
41113 TGTATCGATACAT
1 TGTATCGATACAT
41126 TGTATCGATACA
1 TGTATCGATACA
41138 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.