Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold868
Parameters: 2 7 7 80 10 50 1000
Length:  88443

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4861--4899
5
7.8
5
91
0
51
87
10
2
0
0.65
6122--7047
28
32.3
29
90
3
1352
28
32
17
21
1.96
6122--7047
57
16.2
56
89
3
1357
28
32
17
21
1.96
7573--7647
20
3.8
20
78
0
87
34
13
12
40
1.81
7573--7650
40
2.0
39
87
2
111
34
12
12
39
1.82
11320--11354
15
2.4
15
95
4
63
45
0
5
48
1.26
12174--12200
12
2.2
12
100
0
54
14
7
0
77
0.97
12274--12304
16
1.9
16
93
0
53
51
3
0
45
1.17
12901--12939
2
19.5
2
100
0
78
0
48
0
51
1.00
17083--17133
22
2.4
22
87
9
70
41
0
0
58
0.98
17305--17352
3
16.0
3
91
8
80
66
0
2
31
1.03
17623--17670
21
2.3
21
78
7
53
60
8
0
31
1.26
17883--17954
34
2.1
34
97
0
135
18
15
23
43
1.88
18999--19103
46
2.3
45
87
6
142
20
5
12
61
1.50
21631--21700
36
2.0
34
83
10
88
45
0
0
54
0.99
21829--21856
3
9.3
3
100
0
56
67
0
0
32
0.91
21855--21884
3
10.0
3
100
0
60
33
0
0
66
0.92
22077--22124
21
2.2
22
81
3
53
56
0
0
43
0.99
34004--34042
20
2.0
20
84
0
51
46
15
5
33
1.68
36305--36340
2
18.0
2
100
0
72
50
0
0
50
1.00
37369--37409
21
1.9
22
85
14
59
48
0
0
51
1.00
37396--37435
21
1.9
21
90
10
64
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37630--37670
22
1.9
22
85
5
57
41
0
4
53
1.22
38199--38243
21
2.1
21
100
0
90
40
4
15
40
1.67
41627--41678
20
2.5
22
76
14
58
26
1
3
67
1.18
43227--43291
27
2.5
25
74
18
60
24
1
9
64
1.31
43227--43309
26
3.2
26
73
14
71
26
1
9
62
1.33
43414--43459
19
2.3
20
85
7
67
45
10
4
39
1.59
47129--47166
2
19.0
2
100
0
76
50
0
0
50
1.00
47438--47478
18
2.3
19
79
12
50
65
2
0
31
1.05
48448--48477
14
2.1
14
93
0
51
70
6
0
23
1.11
49657--49701
2
22.5
2
100
0
90
0
48
0
51
1.00
49701--49739
2
19.5
2
100
0
78
48
0
0
51
1.00
52125--52153
13
2.2
13
100
0
58
44
0
6
48
1.29
54694--54734
21
1.9
21
85
14
57
39
0
2
58
1.11
54730--54768
19
2.0
20
85
14
55
53
2
0
43
1.14
56238--56281
22
2.0
23
86
13
65
38
6
4
50
1.50
56158--56290
73
1.9
70
81
10
162
39
3
6
50
1.44
56849--56878
2
15.0
2
92
0
51
46
0
3
50
1.18
57716--57760
2
22.5
2
100
0
90
0
48
0
51
1.00
64893--65186
138
2.1
138
89
3
457
30
13
23
32
1.93
70216--70252
15
2.4
16
86
8
51
8
29
2
59
1.40
71280--71330
17
3.1
17
74
2
50
52
0
1
45
1.12
73188--73249
20
3.2
19
78
15
63
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73230--73264
13
2.6
14
82
17
56
42
0
0
57
0.99
73836--73896
16
3.8
16
86
0
95
32
1
3
62
1.21
74403--74463
16
3.8
16
86
0
95
32
1
3
62
1.21
73687--74830
567
2.0
567
99
0
2279
36
6
11
45
1.66
75056--75110
16
3.2
16
82
7
65
56
0
0
43
0.99
73786--75116
567
2.3
560
85
7
1381
39
6
8
44
1.61
75063--75116
17
3.2
16
81
5
63
64
0
0
35
0.94
75379--75467
11
8.2
11
78
9
51
53
0
0
46
1.00
75439--75479
5
8.6
5
89
10
68
39
0
0
60
0.96
75442--75490
15
3.5
13
88
11
62
36
0
0
63
0.95
75505--75564
20
3.2
20
74
13
63
50
0
1
48
1.11
75490--75541
25
2.0
26
82
10
63
53
0
0
46
1.00
76769--76798
14
2.1
14
93
0
51
33
26
10
30
1.89
81527--81573
24
2.1
23
84
11
62
46
0
2
51
1.13
81967--82008
21
2.0
21
85
0
57
45
0
11
42
1.41
81974--82020
21
2.3
21
88
3
69
34
0
12
53
1.39

Tables:   1

The End!