Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold87
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1020132
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.24
Warning! 278509 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:8130 original size:87 final size:87
Alignment explanation
Indices: 8030--8335 Score: 334
Period size: 87 Copynumber: 3.5 Consensus size: 87
8020 CGAGGAACGA
* * *
8030 GGTTAGAGTATCCCTTCGGAATAATGGGGATGGAGTTTCCCCAAAGATAAAATTCCACAAAATAA
1 GGTTAGAGTATCCCTTCAGAATAGTGGGGATAGAGTTTCCCCAAAGATAAAATTCCACAAAATAA
8095 ATTTAAATTTTTGTTAGGACGG
66 ATTTAAATTTTTGTTAGGACGG
* * * *
8117 GGTTAGAGTATCCCCTCAGAATAGTGGGGATGGAGTTTCCCTAAAGATAAAATTCCACAAAAGAA
1 GGTTAGAGTATCCCTTCAGAATAGTGGGGATAGAGTTTCCCCAAAGATAAAATTCCACAAAATAA
* * *
8182 TATTTGAA-TTCTGTTA-GAGTGG
66 -ATTTAAATTTTTGTTAGGA-CGG
* * ** * * *
8204 GGTTGGAGTATCCCTT-AGAAGGAGTAAGGATAGAGTTTCCCCAAAAAGTAAAATTCCACGAAGT
1 GGTTAGAGTATCCCTTCAGAA-TAGTGGGGATAGAGTTTCCCCAAAGA-TAAAATTCCACAAAAT
* * *
8268 AAATTTAAATATTTGTTAGAACAG
64 AAATTTAAATTTTTGTTAGGACGG
* *
8292 GGTTGGAGTATCCTTTC-GAAATAGTGGGGATAGA-TTTCCCCAAA
1 GGTTAGAGTATCCCTTCAG-AATAGTGGGGATAGAGTTTCCCCAAA
8336 AATTATATGA
Statistics
Matches: 182, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
86 6 0.03
87 119 0.65
88 54 0.30
89 3 0.02
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (87 bp):
GGTTAGAGTATCCCTTCAGAATAGTGGGGATAGAGTTTCCCCAAAGATAAAATTCCACAAAATAA
ATTTAAATTTTTGTTAGGACGG
Found at i:10586 original size:75 final size:73
Alignment explanation
Indices: 10444--10665 Score: 216
Period size: 75 Copynumber: 3.0 Consensus size: 73
10434 AGCAGTAGGT
* * * * * * * * *
10444 AGGTGCCACCGACTCGTGTGGGCATTCT-AAGGAAAA-AAAAGGAGTCAAACTTTTTGA-AGATT
1 AGGTGCCACCAACTCGTGTGAGC-TTTTGAAGAAAAAGAAAAAGCGTCATACTCTTTGAGA-ACT
10506 GAAAAGATAA
64 GAAAAGATAA
* * * * * **
10516 AGGATGCCACTAGCTTGTGTGAGCTTTTGAAGAAATAGAAAAAGTGTCATGTTCTTTGAGAACTG
1 AGG-TGCCACCAACTCGTGTGAGCTTTTGAAGAAAAAGAAAAAGCGTCATACTCTTTGAGAACTG
10581 TAAAAGATAAA
65 -AAAAGAT-AA
* *
10592 AGGTGCCACCAACTCGTGTGAGCTTTTGAAGAAAAAGAAAAAGCGTCCTACTCTTTGAGGACTGA
1 AGGTGCCACCAACTCGTGTGAGCTTTTGAAGAAAAAGAAAAAGCGTCATACTCTTTGAGAACTGA
10657 AAAGATAA
66 AAAGATAA
10665 A
1 A
10666 AGCATTTTGC
Statistics
Matches: 120, Mismatches: 24, Indels: 11
0.77 0.15 0.07
Matches are distributed among these distances:
72 6 0.05
73 24 0.20
74 25 0.21
75 60 0.50
76 5 0.04
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (73 bp):
AGGTGCCACCAACTCGTGTGAGCTTTTGAAGAAAAAGAAAAAGCGTCATACTCTTTGAGAACTGA
AAAGATAA
Found at i:10753 original size:71 final size:70
Alignment explanation
Indices: 10663--10806 Score: 227
Period size: 71 Copynumber: 2.0 Consensus size: 70
10653 CTGAAAAGAT
* * *
10663 AAAAGCATTTTGCTCTTTG-AGAACTAGAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTG
1 AAAAACATCTTGCTCTTTGAAG-ACTAAAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTG
10727 AAGGAAA
65 AA-GAAA
*
10734 AAAAACATCTTGCTCTTTGAAGACTAAAAAAGATAAAAGGTGCCACTAGCTTGTTTGGGCTTTGA
1 AAAAACATCTTGCTCTTTGAAGACTAAAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTGA
10799 AGAAA
66 AGAAA
10804 AAA
1 AAA
10807 CAATGTCCTG
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
70 7 0.10
71 59 0.87
72 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAACATCTTGCTCTTTGAAGACTAAAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTGA
AGAAA
Found at i:10824 original size:71 final size:71
Alignment explanation
Indices: 10673--10834 Score: 222
Period size: 71 Copynumber: 2.3 Consensus size: 71
10663 AAAAGCATTT
*
10673 TGCTCTTTG-AGAACTAGAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTGAAGGAAAAAA
1 TGCTCTTTGAAG-ACTAAAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTGAAGGAAAAAA
*
10737 AACATCT
65 AACATCC
*
10744 TGCTCTTTGAAGACTAAAAAAGATAAAAGGTGCCACTAGCTTGTTTGGGCTTTGAA-GAAAAAAC
1 TGCTCTTTGAAGACTAAAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTGAAGGAAAAAA-
**
10808 AATGTCC
65 AACATCC
* *
10815 TGCTTTTTGAGGA-TAAAAAA
1 TGCTCTTTGAAGACTAAAAAA
10835 CGTCCTACTG
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
70 14 0.17
71 66 0.80
72 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (71 bp):
TGCTCTTTGAAGACTAAAAAAGATAAAAGGCGCCACTAGCTTGTTTGGGCTTTGAAGGAAAAAAA
ACATCC
Found at i:11533 original size:20 final size:21
Alignment explanation
Indices: 11490--11542 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
11480 TCGATACAAA
* *
11490 GTATCAATACATACTTGAATT
1 GTATCAATACATACGTGAAAT
*
11511 GTATCAATACAT-GGTGAAAT
1 GTATCAATACATACGTGAAAT
*
11531 GTATCGATACAT
1 GTATCAATACAT
11543 TAAGCCCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (21 bp):
GTATCAATACATACGTGAAAT
Found at i:13128 original size:3 final size:3
Alignment explanation
Indices: 13114--13147 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
13104 ACCATTAATT
* *
13114 ATG ATG AAG ATG ATG ATG ATA ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
13148 AGTTGACTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (3 bp):
ATG
Found at i:19629 original size:16 final size:17
Alignment explanation
Indices: 19593--19636 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
19583 TTTTAAAAAG
* *
19593 AGGGAGAATTTGTTAAA
1 AGGGAGAAGTTATTAAA
19610 AGGGAGAAGTTATTAAA
1 AGGGAGAAGTTATTAAA
* *
19627 GGGGAAAAGT
1 AGGGAGAAGT
19637 ATGAGTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.34, T:0.23
Consensus pattern (17 bp):
AGGGAGAAGTTATTAAA
Found at i:20405 original size:12 final size:12
Alignment explanation
Indices: 20388--20413 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20378 ATATTGCTTA
20388 GTATCGATACAT
1 GTATCGATACAT
20400 GTATCGATACAT
1 GTATCGATACAT
20412 GT
1 GT
20414 TTTTGATATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (12 bp):
GTATCGATACAT
Found at i:20502 original size:20 final size:20
Alignment explanation
Indices: 20477--20530 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
20467 AAAACTCACT
*
20477 TTGTATCGATACAT-ACTTAA
1 TTGTATCGATACATGA-TGAA
20497 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
*
20517 ATGTATCGATACAT
1 TTGTATCGATACAT
20531 TGAGCCCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:24620 original size:20 final size:20
Alignment explanation
Indices: 24595--24645 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
24585 ACAAGCAATA
*
24595 TATCGATACAAT-TCATCATG
1 TATCGATACAATGT-ACCATG
24615 TATCGATACAATGTACCATG
1 TATCGATACAATGTACCATG
24635 TATCGATACAA
1 TATCGATACAA
24646 ACAGTGGTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (20 bp):
TATCGATACAATGTACCATG
Found at i:27195 original size:22 final size:22
Alignment explanation
Indices: 27134--27198 Score: 64
Period size: 21 Copynumber: 3.0 Consensus size: 22
27124 TGATGGAAAA
* *
27134 TGAAGTATTTTGAAGTAAAAATG
1 TGAAGAATTTTGAAG-AAAGATG
* *
27157 TGAA-AA-TTTGTA-AAAGATT
1 TGAAGAATTTTGAAGAAAGATG
27176 TGAAGAATTTTGAAGAAAGATG
1 TGAAGAATTTTGAAGAAAGATG
27198 T
1 T
27199 TAGGGTTTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
19 9 0.27
20 2 0.06
21 10 0.30
22 8 0.24
23 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.22, T:0.34
Consensus pattern (22 bp):
TGAAGAATTTTGAAGAAAGATG
Found at i:31267 original size:21 final size:20
Alignment explanation
Indices: 31219--31268 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
31209 ATCATGCAAG
*
31219 TTTTTATTTTTCTTAGCTAAT
1 TTTTTA-TTTTCTTAGCCAAT
**
31240 TCATTATTTTCATTAGCCAAT
1 TTTTTATTTTC-TTAGCCAAT
31261 TTTTTATT
1 TTTTTATT
31269 ATCAACTTGC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.22, C:0.12, G:0.04, T:0.62
Consensus pattern (20 bp):
TTTTTATTTTCTTAGCCAAT
Found at i:33537 original size:20 final size:20
Alignment explanation
Indices: 33509--33547 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33499 TCATGTATCG
*
33509 GTACAATGTATCTATACAAT
1 GTACAATGTATCGATACAAT
*
33529 GTACCATGTATCGATACAA
1 GTACAATGTATCGATACAA
33548 ACAGTGGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (20 bp):
GTACAATGTATCGATACAAT
Found at i:33602 original size:20 final size:20
Alignment explanation
Indices: 33577--33630 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
33567 TGCCAGTTTA
**
33577 ATGTATCGATACAATTGTCC
1 ATGTATCGATACAATTGAAC
*
33597 ATGTATCGGTACAA-TGAAC
1 ATGTATCGATACAATTGAAC
*
33616 ACGTATCGATACAAT
1 ATGTATCGATACAAT
33631 GTATCGATAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAATTGAAC
Found at i:33636 original size:13 final size:13
Alignment explanation
Indices: 33618--33642 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33608 CAATGAACAC
33618 GTATCGATACAAT
1 GTATCGATACAAT
33631 GTATCGATACAA
1 GTATCGATACAA
33643 AGCATAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:50606 original size:12 final size:12
Alignment explanation
Indices: 50589--50639 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
50579 TTTCGTACCT
50589 AAAAAAACCAAA
1 AAAAAAACCAAA
*
50601 AAAAAAACC-CA
1 AAAAAAACCAAA
* *
50612 AAAAAAGCTAAGAA
1 AAAAAAAC-CA-AA
50626 AAAAAAACCAAA
1 AAAAAAACCAAA
50638 AA
1 AA
50640 CAATAAAAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
11 8 0.27
12 13 0.43
13 1 0.03
14 8 0.27
ACGTcount: A:0.78, C:0.16, G:0.04, T:0.02
Consensus pattern (12 bp):
AAAAAAACCAAA
Found at i:50647 original size:16 final size:16
Alignment explanation
Indices: 50628--50670 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
50618 GCTAAGAAAA
50628 AAAAACCAAA-AACAAT
1 AAAAA-CAAACAACAAT
50644 AAAAACAAACAACAA-
1 AAAAACAAACAACAAT
*
50659 ACAAACAAACAA
1 AAAAACAAACAA
50671 AAAAGAGGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.77, C:0.21, G:0.00, T:0.02
Consensus pattern (16 bp):
AAAAACAAACAACAAT
Found at i:50653 original size:20 final size:19
Alignment explanation
Indices: 50624--50671 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
50614 AAAAGCTAAG
*
50624 AAAAAAA-AACCAA-AAAC
1 AAAAAAACAAACAACAAAC
50641 AATAAAAACAAACAACAAAC
1 AA-AAAAACAAACAACAAAC
*
50661 AAACAAACAAA
1 AAAAAAACAAA
50672 AAAGAGGTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 2 0.08
18 5 0.19
19 13 0.50
20 6 0.23
ACGTcount: A:0.79, C:0.19, G:0.00, T:0.02
Consensus pattern (19 bp):
AAAAAAACAAACAACAAAC
Found at i:51976 original size:28 final size:28
Alignment explanation
Indices: 51925--52645 Score: 722
Period size: 28 Copynumber: 24.9 Consensus size: 28
51915 CGTTCATCTC
* *
51925 TTCAAAGCCCACACAAATTAGTGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCACCCT
* *
51955 TCCAAAGCCCACAAGTCCGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
51983 TTCAAAGTCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
52011 TTCAAAGCCCACACAAATTAGTGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCACCCT
*
52041 TCCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
52069 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
52097 TTCAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*** *
52125 TTCAAAGCCCACAAGTCAGCAACATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** * *
52153 TTCAAAGCCCACACCTTAGTGGCATCTCT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* * * *
52182 TTAAAAGACCACAAGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
52210 TTCAAAGCCCACAAGTCAATGGTACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
52238 TTCAAAGCCCACAAGTCAGTGGCATACCCC
1 TTCAAAGCCCACAAGTCAGTGGC--ACCCT
* * *
52268 TTCAAAGACCATAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
52296 TTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
52324 TTCAAAGCCCACAAGTCAGTGGCATACCCC
1 TTCAAAGCCCACAAGTCAGTGGC--ACCCT
* * *
52354 TTCAAAGACCACAAGTCAGTGGAATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
52382 TTCAAAGCTCACAAATCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
52410 TTCAAAGCCCACAAGTCAATGGCATACCCC
1 TTCAAAGCCCACAAGTCAGTGGC--ACCCT
* * *
52440 TTCAAAACCCAGAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
52468 TTCAAAGCCCACAAGTTAGTGGCATACCTT
1 TTCAAAGCCCACAAGTCAGTGGC--ACCCT
* * *
52498 TTCAAAGCCCATAAGTCGGTGGCAGCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* ** * **
52526 TTTAAAGCCCACAAAAGTTGGTGGTAACTATT
1 TTCAAAGCCCAC--AAGTCAGTGG-CAC-CCT
*
52558 TTCAAAGCCCACAAGTCGGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
52586 TTCAAAGCCCACACAAGTCGGTGGCAACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
* *
52618 TTTAAAGCCCACATAAGTTAGTGGCACC
1 TTCAAAGCCCAC--AAGTCAGTGGCACC
52646 TTTTTTTTTA
Statistics
Matches: 573, Mismatches: 97, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
28 345 0.60
29 30 0.05
30 162 0.28
31 7 0.01
32 29 0.05
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:51995 original size:58 final size:56
Alignment explanation
Indices: 51925--52645 Score: 722
Period size: 58 Copynumber: 12.5 Consensus size: 56
51915 CGTTCATCTC
* * * *
51925 TTCAAAGCCCACACAAATTAGTGGCACCCTTCCAAAGCCCACAAGTCCGTGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
51983 TTCAAAGTCCACAAGTTAGTGGCACCCTTTCAAAGCCCACACAAATTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGCACCCT
*
52041 TCCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * *** *
52097 TTCAAAGCCCACAAGTCAATGGCATCCTTTCAAAGCCCACAAGTCAGCAACATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
** * * * * * *
52153 TTCAAAGCCCACACCTTAGTGGCATCTCTTTAAAAGACCACAAGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
52210 TTCAAAGCCCACAAGTCAATGGTACCCTTTCAAAGCCCACAAGTCAGTGGCATACCCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC--ACCCT
* * * *
52268 TTCAAAGACCATAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
52324 TTCAAAGCCCACAAGTCAGTGGCATACCCCTTCAAAGACCACAAGTCAGTGGAATCCT
1 TTCAAAGCCCACAAGTCAGTGGC--ACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
52382 TTCAAAGCTCACAAATCAGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCATACCCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC--ACCCT
* * * * *
52440 TTCAAAACCCAGAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC--ACCCT
* * * * ** * **
52498 TTCAAAGCCCATAAGTCGGTGGCAGCCTTTTAAAGCCCACAAAAGTTGGTGGTAACTATT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAC--AAGTCAGTGG-CAC-CCT
* * *
52558 TTCAAAGCCCACAAGTCGGTGGCACCCTTTCAAAGCCCACACAAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
* *
52618 TTTAAAGCCCACATAAGTTAGTGGCACC
1 TTCAAAGCCCAC--AAGTCAGTGGCACC
52646 TTTTTTTTTA
Statistics
Matches: 554, Mismatches: 91, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
56 182 0.33
57 48 0.09
58 237 0.43
59 2 0.00
60 68 0.12
61 2 0.00
62 15 0.03
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (56 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:52070 original size:86 final size:85
Alignment explanation
Indices: 51925--52645 Score: 746
Period size: 86 Copynumber: 8.3 Consensus size: 85
51915 CGTTCATCTC
* * *
51925 TTCAAAGCCCACACAAATTAGTGGCACCCTTCCAAAGCCCACAAGTCCGTGGCACCCTTTCAAAG
1 TTCAAAG-CC-CACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
* *
51990 TCCACAAGTTAGTGGC-ACCCT
64 CCCACAAGTCAGTGGCAACCCT
* *
52011 TTCAAAGCCCACACAAATTAGTGGCACCCTTCCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
1 TTCAAAG-CC-CACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG
52076 CCCACAAGTCAGTGGC-ACCCT
64 CCCACAAGTCAGTGGCAACCCT
* * * *** *
52097 TTCAAAGCCCACAAGTCAATGGCATCCTTTCAAAGCCCACAAGTCAGCAACATCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
** * * *
52162 CACACCTTAGTGGCATCTCT
66 CACAAGTCAGTGGCAACCCT
* * * * * * *
52182 TTAAAAGACCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAATGGTACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
*
52247 CACAAGTCAGTGGCATACCCC
66 CACAAGTCAGTGGCA-ACCCT
* * * * *
52268 TTCAAAGACCATAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
*
52333 CACAAGTCAGTGGCATACCCC
66 CACAAGTCAGTGGCA-ACCCT
* * * * * *
52354 TTCAAAGACCACAAGTCAGTGGAATCCTTTCAAAGCTCACAAATCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
* *
52419 CACAAGTCAATGGCATACCCC
66 CACAAGTCAGTGGCA-ACCCT
* * * *
52440 TTCAAAACCCAGAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATACCTTTTCAAAG
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC--ACCCTTTCAAAG
* * *
52505 CCCATAAGTCGGTGGC-AGCCT
64 CCCACAAGTCAGTGGCAACCCT
* * * ** *
52526 TTTAAAGCCCACAAAAGTTGGTGGTAACTATTTTCAAAGCCCACAAGTCGGTGGCACCCTTTCAA
1 TTCAAAGCCCAC--AAGTTAGTGG-CAC-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAA
* *
52591 AGCCCACACAAGTCGGTGGCAACTCTT
62 AG-CC-CACAAGTCAGTGGCAAC-CCT
*
52618 TTTAAAGCCCACATAAGTTAGTGGCACC
1 TTCAAAGCCCAC--AAGTTAGTGGCACC
52646 TTTTTTTTTA
Statistics
Matches: 546, Mismatches: 77, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
84 58 0.11
85 72 0.13
86 306 0.56
88 44 0.08
89 4 0.01
90 35 0.06
91 3 0.01
92 24 0.04
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (85 bp):
TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
CACAAGTCAGTGGCAACCCT
Found at i:52676 original size:33 final size:32
Alignment explanation
Indices: 52525--52684 Score: 116
Period size: 32 Copynumber: 5.1 Consensus size: 32
52515 GGTGGCAGCC
* * * * *
52525 TTTTAAAGCCCACAAAAGTTGGTGGTAACTAT
1 TTTTAAAGCCCACACAAGTCGATGGCAACTCT
* * *
52557 TTTCAAAG-CC-CACAAGTCGGTGGC-AC-CC
1 TTTTAAAGCCCACACAAGTCGATGGCAACTCT
* *
52585 TTTCAAAGCCCACACAAGTCGGTGGCAACTCT
1 TTTTAAAGCCCACACAAGTCGATGGCAACTCT
* * * *
52617 TTTTAAAGCCCACATAAGT-TAGTGGCACCTTTTT
1 TTTTAAAGCCCACACAAGTCGA-TGGCAAC--TCT
*
52651 TTTTAAAG-CCACACAAGTCGATGGCAACCCT
1 TTTTAAAGCCCACACAAGTCGATGGCAACTCT
52682 TTT
1 TTT
52685 CAAATCACCA
Statistics
Matches: 102, Mismatches: 18, Indels: 17
0.74 0.13 0.12
Matches are distributed among these distances:
28 8 0.08
29 4 0.04
30 25 0.25
31 8 0.08
32 31 0.30
33 15 0.15
34 11 0.11
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (32 bp):
TTTTAAAGCCCACACAAGTCGATGGCAACTCT
Found at i:52806 original size:48 final size:48
Alignment explanation
Indices: 52753--52874 Score: 172
Period size: 48 Copynumber: 2.5 Consensus size: 48
52743 AGCACTTTTA
* *
52753 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACAATGTCTACTTTTCCC
1 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACAATGTCCACTTTTCCC
* * *
52801 TTAGCTCAATGTCGTTAGCCTTTAATCAGCACATTGTCCACTTTTCCC
1 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACAATGTCCACTTTTCCC
* * *
52849 TTAGGTCGATGTCGTTGGCATTGAAT
1 TTAGCTCAATGTCGTTGGCCTTGAAT
52875 TGGCACATTA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (48 bp):
TTAGCTCAATGTCGTTGGCCTTGAATCAGCACAATGTCCACTTTTCCC
Found at i:52881 original size:48 final size:48
Alignment explanation
Indices: 52719--52883 Score: 167
Period size: 48 Copynumber: 3.5 Consensus size: 48
52709 AAGTCCGATA
* * *
52719 TCGTTGGCATTGAATTAGCATATTAG--CACTTTT--ATTAGCTCAATG
1 TCGTTGGCATTGAATCAGCACATT-GTCCACTTTTCCCTTAGCTCAATG
* * * *
52764 TCGCTGGCCTTGAATCAGCACAATGTCTACTTTTCCCTTAGCTCAATG
1 TCGTTGGCATTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
* * * * *
52812 TCGTTAGCCTTTAATCAGCACATTGTCCACTTTTCCCTTAGGTCGATG
1 TCGTTGGCATTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
**
52860 TCGTTGGCATTGAATTGGCACATT
1 TCGTTGGCATTGAATCAGCACATT
52884 AGCACTCCTT
Statistics
Matches: 97, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
44 1 0.01
45 19 0.20
46 6 0.06
48 71 0.73
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (48 bp):
TCGTTGGCATTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
Found at i:53386 original size:7 final size:7
Alignment explanation
Indices: 53374--53399 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
53364 TGTTGCAACA
53374 ACAAACT
1 ACAAACT
53381 ACAAACT
1 ACAAACT
53388 ACAAACT
1 ACAAACT
53395 ACAAA
1 ACAAA
53400 TGCCATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.27, G:0.00, T:0.12
Consensus pattern (7 bp):
ACAAACT
Found at i:53683 original size:20 final size:20
Alignment explanation
Indices: 53597--53673 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
53587 TTTTACCTAG
* *
53597 ATGTATCGACACATTTTTCA
1 ATGTATCGATACATTCTTCA
* *
53617 AT-TAATCGATAC-TTGTATGA
1 ATGT-ATCGATACATTCT-TCA
*
53637 ATGTCTCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
53657 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
53674 ATCTTTTATC
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
19 4 0.09
20 38 0.83
21 4 0.09
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:62140 original size:32 final size:32
Alignment explanation
Indices: 62092--62257 Score: 199
Period size: 32 Copynumber: 5.2 Consensus size: 32
62082 CAACATTAGG
* * *
62092 TTTGGAAAAGGATGCCACCAACTTGTGTGGAC
1 TTTGGAGAAGGTTGCCACCAACTTGTGTGGGC
*
62124 TTTTGAGAAGGTTGCCACCAACTTGTGTGGGC
1 TTTGGAGAAGGTTGCCACCAACTTGTGTGGGC
* *
62156 TTT-GAGGAAGGTTACCACCAGCTTGTGTGGGC
1 TTTGGA-GAAGGTTGCCACCAACTTGTGTGGGC
* * *
62188 TTTGGGGAAGGTTGCCACCGACTTGTGTGTGC
1 TTTGGAGAAGGTTGCCACCAACTTGTGTGGGC
* * *
62220 TTTGGAAAAAAGTTGCTACCAACTTGTGTGGGC
1 TTTGG-AGAAGGTTGCCACCAACTTGTGTGGGC
62253 TTTGG
1 TTTGG
62258 GGTCTAGCTC
Statistics
Matches: 114, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.02
32 85 0.75
33 27 0.24
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.30
Consensus pattern (32 bp):
TTTGGAGAAGGTTGCCACCAACTTGTGTGGGC
Found at i:62417 original size:31 final size:31
Alignment explanation
Indices: 62347--62513 Score: 145
Period size: 31 Copynumber: 5.3 Consensus size: 31
62337 CTAACTTGCA
** * *
62347 TGGGCTTTTGAGAAAGAATGCCACCAACTTGTT
1 TGGGC-TTT-AGAAAGGTTGCCACCGACTTGTG
* * * * *
62380 TAGGCTTTAGAAAGGTTTCCATCGACTTATA
1 TGGGCTTTAGAAAGGTTGCCACCGACTTGTG
* * *
62411 TGGGCTTTAGAAGGGTTGCCATCGGCTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCGACTTGTG
** * *
62442 TGTACTTTGAGAAGGGTTGCCACCGACTTGGG
1 TGGGCTTT-AGAAAGGTTGCCACCGACTTGTG
* *
62474 TGGGCTTTAGAAAGGTTACCACCGATTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCGACTTGTG
62505 TGGGCTTTA
1 TGGGCTTTA
62514 CAAAAAGGTG
Statistics
Matches: 108, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
31 75 0.69
32 29 0.27
33 4 0.04
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (31 bp):
TGGGCTTTAGAAAGGTTGCCACCGACTTGTG
Found at i:62588 original size:28 final size:28
Alignment explanation
Indices: 62557--62631 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
62547 TGAAAAATTG
62557 TCACAGAGTTGTGGACTTTAAAAAAATA
1 TCACAGAGTTGTGGACTTTAAAAAAATA
* *** *
62585 TCACAGAATTGTGGACTTTAAAAGGGTG
1 TCACAGAGTTGTGGACTTTAAAAAAATA
*
62613 CCACAGAGTTGTGGACTTT
1 TCACAGAGTTGTGGACTTT
62632 TTCAAAAGCG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (28 bp):
TCACAGAGTTGTGGACTTTAAAAAAATA
Found at i:63193 original size:14 final size:14
Alignment explanation
Indices: 63174--63205 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
63164 TATAATATCA
63174 AGATATTCTGATGC
1 AGATATTCTGATGC
63188 AGATATTCTGATGC
1 AGATATTCTGATGC
63202 AGAT
1 AGAT
63206 TTTAATCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (14 bp):
AGATATTCTGATGC
Found at i:67927 original size:158 final size:159
Alignment explanation
Indices: 67638--67960 Score: 567
Period size: 158 Copynumber: 2.0 Consensus size: 159
67628 CAAGGATAAC
*
67638 ATGTTGGTATGATGGTGAATGAAATAATATAACATAGATCATTCAATGATAAAGAGAAGGGGACA
1 ATGTTAGTATGATGGTGAATGAAATAATATAACATAGATCATTCAATGATAAAGAGAAGGGGACA
* * * *
67703 TACTATTGGAATTTATCTCGCAGTTGTCCTTGATTATTTAAAAAATAACCAAATTAACAATATTG
66 TACTATTGCAATTTATCTCGCAATTGTCCTTAATTATTCAAAAAATAACCAAATTAACAATATTG
67768 GAGATGTGTCTGGATTCATTGATTAATTG
131 GAGATGTGTCTGGATTCATTGATTAATTG
*
67797 ATGTTAGTATGATGGTGAATGAAATAATATAACGTAGATCATTCAATGATAAAGAGAA-GGGACA
1 ATGTTAGTATGATGGTGAATGAAATAATATAACATAGATCATTCAATGATAAAGAGAAGGGGACA
*
67861 TACTATTGCAATTTATCTCGTAATTGTCCTTAATTATTCAAAAAATAACCAAATTAACAATATTG
66 TACTATTGCAATTTATCTCGCAATTGTCCTTAATTATTCAAAAAATAACCAAATTAACAATATTG
67926 GAGATGTGTCTGGATTCATTGATTAATTG
131 GAGATGTGTCTGGATTCATTGATTAATTG
*
67955 AAGTTA
1 ATGTTA
67961 AAAACGGGTG
Statistics
Matches: 156, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
158 100 0.64
159 56 0.36
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (159 bp):
ATGTTAGTATGATGGTGAATGAAATAATATAACATAGATCATTCAATGATAAAGAGAAGGGGACA
TACTATTGCAATTTATCTCGCAATTGTCCTTAATTATTCAAAAAATAACCAAATTAACAATATTG
GAGATGTGTCTGGATTCATTGATTAATTG
Found at i:68159 original size:27 final size:27
Alignment explanation
Indices: 68121--68188 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
68111 TCAAAAACGG
*
68121 GGTTGGTGTATCCCCATGGAAGAATAA
1 GGTTGGAGTATCCCCATGGAAGAATAA
*
68148 GGTTGGAGTATCCCCTTGGAAGAATAA
1 GGTTGGAGTATCCCCATGGAAGAATAA
68175 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
68189 TAATGAAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (27 bp):
GGTTGGAGTATCCCCATGGAAGAATAA
Found at i:69326 original size:22 final size:22
Alignment explanation
Indices: 69293--69344 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
69283 TATAGTGATG
*
69293 AACAATGATGTATCGATACATA
1 AACAGTGATGTATCGATACATA
*
69315 AATAGTGATGTATCGATACATA
1 AACAGTGATGTATCGATACATA
69337 AACAGTGA
1 AACAGTGA
69345 ATTTATAGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (22 bp):
AACAGTGATGTATCGATACATA
Found at i:69408 original size:22 final size:22
Alignment explanation
Indices: 69381--69429 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
69371 AGCGATGAAT
*
69381 AGTGATGTATCGATACACGAAC
1 AGTGATATATCGATACACGAAC
*
69403 AGTGATATATCGATACATGAAC
1 AGTGATATATCGATACACGAAC
69425 AGTGA
1 AGTGA
69430 AAAAAATGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.24
Consensus pattern (22 bp):
AGTGATATATCGATACACGAAC
Found at i:73799 original size:20 final size:20
Alignment explanation
Indices: 73728--73799 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
73718 TTTTACCCAG
*
73728 ATGTATTGATA-TATTTTTCA
1 ATGTATCGATACT-TTTTTCA
* * * *
73748 ATGTATCGATACATGTATGA
1 ATGTATCGATACTTTTTTCA
73768 ATGTATCGATACTTTTTTCA
1 ATGTATCGATACTTTTTTCA
*
73788 ATGTATTGATAC
1 ATGTATCGATAC
73800 ATTCTATTTT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.46
Consensus pattern (20 bp):
ATGTATCGATACTTTTTTCA
Found at i:73811 original size:26 final size:26
Alignment explanation
Indices: 73780--73862 Score: 79
Period size: 20 Copynumber: 3.2 Consensus size: 26
73770 GTATCGATAC
73780 TTTTTTCAATGTATTGATACATTCTA
1 TTTTTTCAATGTATTGATACATTCTA
73806 TTTTTTTACCTAAATGTATTGAT--A--C-A
1 -TTTTTT--C--AATGTATTGATACATTCTA
73832 -TTTTTCAATGTATTGATACATTCTA
1 TTTTTTCAATGTATTGATACATTCTA
73857 TTTTTT
1 TTTTTT
73863 TACCCAAATG
Statistics
Matches: 46, Mismatches: 0, Indels: 21
0.69 0.00 0.31
Matches are distributed among these distances:
20 11 0.24
22 2 0.04
24 6 0.13
25 1 0.02
26 6 0.13
27 7 0.15
29 2 0.04
31 11 0.24
ACGTcount: A:0.27, C:0.11, G:0.07, T:0.55
Consensus pattern (26 bp):
TTTTTTCAATGTATTGATACATTCTA
Found at i:73843 original size:51 final size:51
Alignment explanation
Indices: 73767--73903 Score: 238
Period size: 51 Copynumber: 2.7 Consensus size: 51
73757 TACATGTATG
* *
73767 AATGTATCGATACTTTTTTCAATGTATTGATACATTCTATTTTTTTACCTA
1 AATGTATCGATACATTTTTCAATGTATTGATACATTCTATTTTTTTACCCA
*
73818 AATGTATTGATACATTTTTCAATGTATTGATACATTCTATTTTTTTACCCA
1 AATGTATCGATACATTTTTCAATGTATTGATACATTCTATTTTTTTACCCA
*
73869 AATGTATCGATACATTTTTCAATGTATCGATACAT
1 AATGTATCGATACATTTTTCAATGTATTGATACAT
73904 CTAGTTAATT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (51 bp):
AATGTATCGATACATTTTTCAATGTATTGATACATTCTATTTTTTTACCCA
Found at i:74704 original size:13 final size:13
Alignment explanation
Indices: 74686--74711 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74676 CAATTTTTTG
74686 TGTATCGATACAT
1 TGTATCGATACAT
74699 TGTATCGATACAT
1 TGTATCGATACAT
74712 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:74728 original size:32 final size:33
Alignment explanation
Indices: 74666--74729 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
74656 TACAAGCCAA
**
74666 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
*
74699 TGTATCGATAC-ATACTTTGTGTATTGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
74730 AGTTTGGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:76836 original size:21 final size:20
Alignment explanation
Indices: 76807--76849 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
76797 GACTAGTGTG
* *
76807 GGGACTGCCTGGTTGTGACCT
1 GGGACTGCC-GGTCGCGACCT
*
76828 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
76848 GG
1 GG
76850 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.09, C:0.26, G:0.44, T:0.21
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:77147 original size:21 final size:21
Alignment explanation
Indices: 77123--77169 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
77113 TTTGAAGCTG
77123 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
*
77143 AATTTGAAGTGAAAAACAAGT
1 ATTTTGAAGTGAAAAACAAGT
77164 ATTTTG
1 ATTTTG
77170 CAAAGGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:77303 original size:13 final size:13
Alignment explanation
Indices: 77285--77319 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
77275 TCCCCCTGTT
*
77285 TCGATACAGTGTA
1 TCGATACAATGTA
77298 TCGATACAATGTA
1 TCGATACAATGTA
77311 TCGATACAA
1 TCGATACAA
77320 AGAAAAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (13 bp):
TCGATACAATGTA
Found at i:82674 original size:13 final size:13
Alignment explanation
Indices: 82656--82681 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82646 CAATTTTTTA
82656 TGTATCGATACAT
1 TGTATCGATACAT
82669 TGTATCGATACAT
1 TGTATCGATACAT
82682 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:82697 original size:32 final size:33
Alignment explanation
Indices: 82636--82699 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
82626 TACAAGCCAA
**
82636 TGTATCGATACAATTTTTTATGTATCGATACAT
1 TGTATCGATACAATACTTTATGTATCGATACAT
*
82669 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTATGTATCGATACA
82700 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTATGTATCGATACAT
Found at i:92398 original size:21 final size:20
Alignment explanation
Indices: 92368--92406 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
92358 CACATTTTTG
*
92368 TCTAAATGTATCGATACATT
1 TCTAAATGTACCGATACATT
92388 TCTAGAATGTACCGATACA
1 TCTA-AATGTACCGATACA
92407 GGGTCCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (20 bp):
TCTAAATGTACCGATACATT
Found at i:92637 original size:50 final size:51
Alignment explanation
Indices: 92562--92670 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 51
92552 TAAATTTATC
* *
92562 GATACATTTATCTTTATATCGATACATCTAGATTTTTTA-CCACATGTATT
1 GATACATTTATCATTATATCGATACATCTAGATATTTTACCCACATGTATT
* * * * *
92612 GATACATTTATGATTATATCGATACATTTGGGTATTTTACCCAGATGTATT
1 GATACATTTATCATTATATCGATACATCTAGATATTTTACCCACATGTATT
92663 GATACATT
1 GATACATT
92671 ATTCAATGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 33 0.65
51 18 0.35
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (51 bp):
GATACATTTATCATTATATCGATACATCTAGATATTTTACCCACATGTATT
Found at i:102572 original size:13 final size:13
Alignment explanation
Indices: 102554--102579 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102544 CAATTTTTTG
102554 TGTATCGATACAT
1 TGTATCGATACAT
102567 TGTATCGATACAT
1 TGTATCGATACAT
102580 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:102644 original size:21 final size:21
Alignment explanation
Indices: 102618--102693 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
102608 CTGCCAAGAA
*
102618 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
102639 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
102659 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
102680 ATGTATCGATACAT
1 ATGTATCGATACAT
102694 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:102664 original size:20 final size:20
Alignment explanation
Indices: 102639--102711 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
102629 CATCTTTTTT
102639 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
102659 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
102680 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
102700 ATGTATCGATAC
1 ATGTATCGATAC
102712 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:102675 original size:41 final size:41
Alignment explanation
Indices: 102618--102711 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
102608 CTGCCAAGAA
*
102618 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
102659 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
102700 ATGTATCGATAC
1 ATGTATCGATAC
102712 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:105170 original size:13 final size:13
Alignment explanation
Indices: 105132--105170 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
105122 ATAAACACCC
*
105132 TGTATCGATACAG
1 TGTATCGATACAT
105145 TGTATCGATACAT
1 TGTATCGATACAT
105158 TGTATCGATACAT
1 TGTATCGATACAT
105171 AGAATTTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:107250 original size:15 final size:15
Alignment explanation
Indices: 107214--107251 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
107204 TACATCAATT
* *
107214 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
107229 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
107244 TCATTTTG
1 TCATTTTG
107252 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:109084 original size:21 final size:21
Alignment explanation
Indices: 109055--109099 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
109045 AAGTTTTCAT
*
109055 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
109075 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
109097 TTT
1 TTT
109100 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:111333 original size:13 final size:13
Alignment explanation
Indices: 111315--111340 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
111305 CAATTTTTTG
111315 TGTATCGATACAT
1 TGTATCGATACAT
111328 TGTATCGATACAT
1 TGTATCGATACAT
111341 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:111405 original size:21 final size:21
Alignment explanation
Indices: 111379--111454 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
111369 CTGCCAAGAA
*
111379 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
111400 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
111420 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
111441 ATGTATCGATACAT
1 ATGTATCGATACAT
111455 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:111425 original size:20 final size:20
Alignment explanation
Indices: 111400--111472 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
111390 CATCTTTTTT
111400 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
111420 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
111441 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
111461 ATGTATCGATAC
1 ATGTATCGATAC
111473 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:111436 original size:41 final size:41
Alignment explanation
Indices: 111379--111472 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
111369 CTGCCAAGAA
*
111379 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
111420 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
111461 ATGTATCGATAC
1 ATGTATCGATAC
111473 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:112182 original size:13 final size:13
Alignment explanation
Indices: 112164--112189 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
112154 ACATTATGCT
112164 TTGTATCGATACA
1 TTGTATCGATACA
112177 TTGTATCGATACA
1 TTGTATCGATACA
112190 CGCTCAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:112276 original size:13 final size:13
Alignment explanation
Indices: 112258--112282 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112248 TACATGAGAC
112258 ATTGTATCGATAT
1 ATTGTATCGATAT
112271 ATTGTATCGATA
1 ATTGTATCGATA
112283 CATGGTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
ATTGTATCGATAT
Found at i:136605 original size:169 final size:165
Alignment explanation
Indices: 136324--136938 Score: 600
Period size: 169 Copynumber: 3.7 Consensus size: 165
136314 AATTTTAACA
* * * * * *
136324 AAAAAATCCAAAACTCATGAAAATAAATTAAGTTTTT-AAAACTGAATTAATA-CAAATCAAATG
1 AAAAAATCAAAAACTAATGAAAATGAATGAA-TTTTTGAAAACTGAATTAATATAAAAT-AAATA
** * * * * *
136387 ATGATGTTTGATGAATTTTAAAAATTGAAAACGAGGAAAAATACCCTCGAAAAAAATTACGGAGT
64 AAAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAAATTACGGAGT
*
136452 AGAAAATACCGTATTTCGAAAAAAAAAAGAGATTTCAAGG
129 AGAAAA-A-C-TATTTCGAAAAAAAAGAGAGATTTCAAGG
* * *
136492 AAAAAAT-AAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGAATTACTATGAAAA-AAGTA
1 AAAAAATCAAAAACT-AATGAAAATGAATGAATTTTTGAAAACTGAATTAATAT-AAAATAAATA
*
136555 AAAATATTTGACTGAATTTTAAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAAATTAC-GAA
64 AAAATATTTGA-TGAATTTTAAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAAATTACGGAG
* * * * *
136619 CAGAAAAGATCATATTTC-AAAAAAAGAGGGGGGATTTTATGG
128 TAGAAAA-A-C-TATTTCGAAAAAAA-A-GAGAGATTTCAAGG
* * *
136661 AAAACATCAAAAACTCATGAAAATGAATGAATTTTTTATAAA-TGAATTAATATAAAATAAATAA
1 AAAAAATCAAAAACTAATGAAAATGAATGAATTTTTGA-AAACTGAATTAATATAAAATAAATAA
* * * * *
136725 AAATATTTGACGAATTTTAAAAATTAAAAACTGAG-AAAATCCTCTC-AAAAAATTTACGAAGTA
65 AAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAAATTACGGAGTA
*
136788 G-AAAA--ATTTCG--AAAAAAGAGAAATTTCAAGG
130 GAAAAACTATTTCGAAAAAAAAGAGAGATTTCAAGG
*
136819 AAATAAATCAAAAACTCAA--AAATATGAATGAA-ATTTGAAAACTGAATTAATATAAAATAAAT
1 AAA-AAATCAAAAACT-AATGAAA-ATGAATGAATTTTTGAAAACTGAATTAATATAAAATAAAT
* * * * * *
136881 AAAAATATTTGATTAATTTTAAAAACTAAAGATTAAGAAAAATCCTC-CAAAAAAAATT
63 AAAAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAAATT
136939 TAGGGAGAAA
Statistics
Matches: 374, Mismatches: 55, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
157 3 0.01
158 71 0.19
159 38 0.10
160 6 0.02
161 5 0.01
165 1 0.00
166 13 0.03
167 30 0.08
168 89 0.24
169 106 0.28
170 12 0.03
ACGTcount: A:0.54, C:0.08, G:0.11, T:0.26
Consensus pattern (165 bp):
AAAAAATCAAAAACTAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATAAAATAAATAAA
AATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCCCTCGAAAAAAATTACGGAGTAG
AAAAACTATTTCGAAAAAAAAGAGAGATTTCAAGG
Found at i:138125 original size:42 final size:41
Alignment explanation
Indices: 138076--138363 Score: 192
Period size: 42 Copynumber: 7.0 Consensus size: 41
138066 CAAGCGGATG
*
138076 AAAGATGAAGAAGTCTCTCGAGCCTGAGCCGACGAGTAGAC
1 AAAGATGAAGAAGTCTCTCGAGCCTGAGCCGACGGGTAGAC
* * * * *
138117 AATTGATGAAGGAGTCTCTTG-GCCTGAGCCGACGGGCAAAC
1 AA-AGATGAAGAAGTCTCTCGAGCCTGAGCCGACGGGTAGAC
* * * * * *
138158 GAAAGATGAAAAAGTCTCTCG-GATCTGAACTGATGGG-A-AA
1 -AAAGATGAAGAAGTCTCTCGAG-CCTGAGCCGACGGGTAGAC
* * * *
138198 AAAGATGAAGAAGTCTATCAAGTCTGAGCCAACGGGTAGAC
1 AAAGATGAAGAAGTCTCTCGAGCCTGAGCCGACGGGTAGAC
* * *
138239 GAAAGATGAAGCAGTCTC-CCAGGCCTAAGCCGACGGGTAGAC
1 -AAAGATGAAGAAGTCTCTCGA-GCCTGAGCCGACGGGTAGAC
** * * * * * * * *
138281 GATTGATGAAGGAGTCTCCCAAGCCTTAGCCGATGAGCAGATG
1 -AAAGATGAAGAAGTCTCTCGAGCCTGAGCCGACGGGTAGA-C
* *
138324 AAAGATGAAGAAGTCTCTCG-GTCTGAGCCGACGGGCAGAC
1 AAAGATGAAGAAGTCTCTCGAGCCTGAGCCGACGGGTAGAC
138364 GATTGACAAA
Statistics
Matches: 189, Mismatches: 48, Indels: 21
0.73 0.19 0.08
Matches are distributed among these distances:
39 27 0.14
40 3 0.02
41 53 0.28
42 104 0.55
43 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.30, T:0.17
Consensus pattern (41 bp):
AAAGATGAAGAAGTCTCTCGAGCCTGAGCCGACGGGTAGAC
Found at i:138228 original size:164 final size:164
Alignment explanation
Indices: 138030--138349 Score: 383
Period size: 164 Copynumber: 2.0 Consensus size: 164
138020 GAGCTGACAA
* * * * * * * *
138030 GAAAAAAGATGAAAAAGTTTTTTAGGTTTGAGCCAACAAGCGGATGAAAGATGAAGAAGTCTCTC
1 GAAAAAAGATGAAAAAGTCTATCAAGTCTGAGCCAACAAGCAGACGAAAGATGAAGAAGTCTCCC
* *** *
138095 -GAGCCTGAGCCGACGAGTAGACAATTGATGAAGGAGTCT-CTTGGCCTGAGCCGACGGGCAAAC
66 AG-GCCTAAGCCGACGAGTAGACAATTGATGAAGGAGTCTCCCAAGCCTGAGCCGACGAGCAAAC
138158 GAAAGATGAAAAAGTCTCTCGGATCTGAACTGATGG
130 GAAAGATGAAAAAGTCTCTCGG-TCTGAACTGATGG
* ** * *
138194 GAAAAAAGATGAAGAAGTCTATCAAGTCTGAGCCAACGGGTAGACGAAAGATGAAGCAGTCTCCC
1 GAAAAAAGATGAAAAAGTCTATCAAGTCTGAGCCAACAAGCAGACGAAAGATGAAGAAGTCTCCC
* * * * * *
138259 AGGCCTAAGCCGACGGGTAGACGATTGATGAAGGAGTCTCCCAAGCCTTAGCCGATGAGCAGATG
66 AGGCCTAAGCCGACGAGTAGACAATTGATGAAGGAGTCTCCCAAGCCTGAGCCGACGAGCAAACG
*
138324 AAAGATGAAGAAGTCTCTCGGTCTGA
131 AAAGATGAAAAAGTCTCTCGGTCTGA
138350 GCCGACGGGC
Statistics
Matches: 129, Mismatches: 25, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
164 91 0.71
165 38 0.29
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (164 bp):
GAAAAAAGATGAAAAAGTCTATCAAGTCTGAGCCAACAAGCAGACGAAAGATGAAGAAGTCTCCC
AGGCCTAAGCCGACGAGTAGACAATTGATGAAGGAGTCTCCCAAGCCTGAGCCGACGAGCAAACG
AAAGATGAAAAAGTCTCTCGGTCTGAACTGATGG
Found at i:138474 original size:42 final size:42
Alignment explanation
Indices: 138075--138546 Score: 116
Period size: 42 Copynumber: 11.4 Consensus size: 42
138065 ACAAGCGGAT
*
138075 GAAAGATGAAGAAGTC-TCTCGAGCCTGAGCCGACGAGTAGAC
1 GAAAGATGAAGAAGTCTTC-CGAGCCTAAGCCGACGAGTAGAC
* * * * * * *
138117 -AATTGATGAAGGAGTC-TCTTG-GCCTGAGCCGACGGGCAAAC
1 GAA-AGATGAAGAAGTCTTC-CGAGCCTAAGCCGACGAGTAGAC
* * * * * *
138158 GAAAGATGAAAAAGTCTCTCGGA-TCTGAA-CTGATG-G--GAA
1 GAAAGATGAAGAAGTCT-TCCGAGCCT-AAGCCGACGAGTAGAC
* * * * * *
138197 AAAAGATGAAGAAGTCTAT-CAAGTCTGAGCCAACGGGTAGAC
1 GAAAGATGAAGAAGTCT-TCCGAGCCTAAGCCGACGAGTAGAC
* * *
138239 GAAAGATGAAGCAGTC-TCCCAGGCCTAAGCCGACGGGTAGAC
1 GAAAGATGAAGAAGTCTTCCGA-GCCTAAGCCGACGAGTAGAC
** * * * * * * *
138281 GATTGATGAAGGAGTCTCCCAAGCCTTAGCCGATGAGCAGAT
1 GAAAGATGAAGAAGTCTTCCGAGCCTAAGCCGACGAGTAGAC
* * * *
138323 GAAAGATGAAGAAGTC-TCTCG-GTCTGAGCCGACGGGCAGAC
1 GAAAGATGAAGAAGTCTTC-CGAGCCTAAGCCGACGAGTAGAC
** ** * * * ** * *
138364 GATTGACAAAGGAAGTCTTCCGGGACTGAGTTGA-TAG--GAA
1 GAAAGATGAA-GAAGTCTTCCGAGCCTAAGCCGACGAGTAGAC
* * * * * *
138404 AAAAAACGAAGAAGTC-TCCCAGGTCTAAGCCGACGAGTAGAT
1 GAAAGATGAAGAAGTCTTCCGA-GCCTAAGCCGACGAGTAGAC
** * **
138446 GAAAGATGAAGAAGTCTTCCGAGCCTAAGTAGACCAACAGAC
1 GAAAGATGAAGAAGTCTTCCGAGCCTAAGCCGACGAGTAGAC
** * * * * * *
138488 GATTGATGAAGGAGTC-TCTCGAGCATGAGTCAACGAGCAGAC
1 GAAAGATGAAGAAGTCTTC-CGAGCCTAAGCCGACGAGTAGAC
*
138530 GAAAGATAAAGAAGTCT
1 GAAAGATGAAGAAGTCT
138547 CTCAGGTCTG
Statistics
Matches: 306, Mismatches: 99, Indels: 49
0.67 0.22 0.11
Matches are distributed among these distances:
38 5 0.02
39 36 0.12
40 11 0.04
41 56 0.18
42 178 0.58
43 20 0.07
ACGTcount: A:0.35, C:0.19, G:0.29, T:0.17
Consensus pattern (42 bp):
GAAAGATGAAGAAGTCTTCCGAGCCTAAGCCGACGAGTAGAC
Found at i:138474 original size:207 final size:208
Alignment explanation
Indices: 138166--138602 Score: 504
Period size: 207 Copynumber: 2.1 Consensus size: 208
138156 ACGAAAGATG
** * * * * *
138166 AAAAAGTCTCTC-GGATCTGAACTGATGGGAAAAAAGATGAAGAAGTCTATCAAGTCTGAGCCAA
1 AAAAAGTCTCTCGGGA-CTGAGTTGATAGGAAAAAAAACGAAGAAGTCTACCAAGTCTAAGCCAA
* * * ****
138230 CGGGTAGACGAAAGATGAAGCAGTCTCCCAGGCCTAAGCCGACGGGTAGACGATTGATGAAGGAG
65 CGAGTAGACGAAAGATGAAGAAGTCTCCCAGGCCTAAGCAGACCAACAGACGATTGATGAAGGAG
* * * * * * *
138295 TCTCCCAAGCCTTAGCCGATGAGCAGATGAAAGATGAAGAAGTCTCTC-GGTCTGAGCCGACGGG
130 TCTCCCAAGCATGAGCCAACGAGCAGACGAAAGATAAAGAAGTCTCTCAGGTCTGAGCCGACAGG
138359 CAGACGATTGACAA
195 CAGACGATTGACAA
** * * *
138373 AGGAAGTCT-TCCGGGACTGAGTTGATAGGAAAAAAAACGAAGAAGTCTCCCAGGTCTAAGCCGA
1 AAAAAGTCTCT-CGGGACTGAGTTGATAGGAAAAAAAACGAAGAAGTCTACCAAGTCTAAGCCAA
* * *
138437 CGAGTAGATGAAAGATGAAGAAGTCTTCC-GAGCCTAAGTAGACCAACAGACGATTGATGAAGGA
65 CGAGTAGACGAAAGATGAAGAAGTCTCCCAG-GCCTAAGCAGACCAACAGACGATTGATGAAGGA
* * * *
138501 GTCTCTCGAGCATGAGTCAACGAGCAGACGAAAGATAAAGAAGTCTCTCAGGTCTGAGCCGATAG
129 GTCTCCCAAGCATGAGCCAACGAGCAGACGAAAGATAAAGAAGTCTCTCAGGTCTGAGCCGACAG
* *
138566 GTAGACGATTGATAA
194 GCAGACGATTGACAA
138581 AAAAAGTCTCTCGGGACTGAGT
1 AAAAAGTCTCTCGGGACTGAGT
138603 CAACGGGAAA
Statistics
Matches: 188, Mismatches: 37, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
206 2 0.01
207 138 0.73
208 47 0.25
209 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.18
Consensus pattern (208 bp):
AAAAAGTCTCTCGGGACTGAGTTGATAGGAAAAAAAACGAAGAAGTCTACCAAGTCTAAGCCAAC
GAGTAGACGAAAGATGAAGAAGTCTCCCAGGCCTAAGCAGACCAACAGACGATTGATGAAGGAGT
CTCCCAAGCATGAGCCAACGAGCAGACGAAAGATAAAGAAGTCTCTCAGGTCTGAGCCGACAGGC
AGACGATTGACAA
Found at i:138546 original size:165 final size:165
Alignment explanation
Indices: 138246--138546 Score: 345
Period size: 165 Copynumber: 1.8 Consensus size: 165
138236 GACGAAAGAT
* * ** * *
138246 GAAGCAGTCTCCCAGGCCTAAGCCGACGGGTAGACGATTGATGAAGGAGTCTCCCAAGCCTTAGC
1 GAAGAAGTCTCCCAGGCCTAAGCCGACGAGTAGACGAAAGATGAAGAAGTCTCCCAAGCCTAAGC
* ** * * * * **
138311 CGATGAGCAGATGAAAGATGAAGAAGTCTCTCGGTCTGAGCCGACGGGCAGACGATTGACAAAGG
66 AGACCAACAGACGAAAGATGAAGAAGTCTCTCGGTCTGAGCCAACGAGCAGACGAAAGACAAAGG
138376 AAGTCTTCCGGGACTGAGTTGATAGGAAAAAAAAC
131 AAGTCTTCCGGGACTGAGTTGATAGGAAAAAAAAC
* * * * *
138411 GAAGAAGTCTCCCAGGTCTAAGCCGACGAGTAGATGAAAGATGAAGAAGTCTTCCGAGCCTAAGT
1 GAAGAAGTCTCCCAGGCCTAAGCCGACGAGTAGACGAAAGATGAAGAAGTCTCCCAAGCCTAAGC
** * * *
138476 AGACCAACAGACGATTGATGAAGGAGTCTCTCGAG-CATGAGTCAACGAGCAGACGAAAGATAAA
66 AGACCAACAGACGAAAGATGAAGAAGTCTCTCG-GTC-TGAGCCAACGAGCAGACGAAAGACAAA
138540 -GAAGTCT
129 GGAAGTCT
138547 CTCAGGTCTG
Statistics
Matches: 109, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
165 87 0.80
166 22 0.20
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.17
Consensus pattern (165 bp):
GAAGAAGTCTCCCAGGCCTAAGCCGACGAGTAGACGAAAGATGAAGAAGTCTCCCAAGCCTAAGC
AGACCAACAGACGAAAGATGAAGAAGTCTCTCGGTCTGAGCCAACGAGCAGACGAAAGACAAAGG
AAGTCTTCCGGGACTGAGTTGATAGGAAAAAAAAC
Found at i:138805 original size:42 final size:42
Alignment explanation
Indices: 138746--138830 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
138736 TTAATTAAGG
* * *
138746 AGTCTCCTAGGTCTGAGCTGATGAGCACATGAAAGATGAAGA
1 AGTCTCATAGGTCTGAGCTGATAAGCACACGAAAGATGAAGA
* *
138788 AGTCTCATGGGTCTGAGCTGATAAGCAGACGAAAGATGAAGA
1 AGTCTCATAGGTCTGAGCTGATAAGCACACGAAAGATGAAGA
138830 A
1 A
138831 CTCTAGACTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.20
Consensus pattern (42 bp):
AGTCTCATAGGTCTGAGCTGATAAGCACACGAAAGATGAAGA
Found at i:152102 original size:128 final size:127
Alignment explanation
Indices: 151873--152236 Score: 500
Period size: 127 Copynumber: 2.9 Consensus size: 127
151863 TCAAAAAGTG
* * * * *
151873 TCATTTCGTACCTTAATGGATACTCGCAAAGATACGAAAAG-CTTTTGAAATCCTTTATACCCCT
1 TCATTTCGTACCTTAATAGATACCCGAAAAGATACGAAAAGTTTTTTGAAATCTTTTATACCCCT
* * *
151937 AC-GATACCCATAGGAATATAAAAAATTGAAAATGATTAATATTTATTTATGTTTGGAAAAAGA
66 ACGGATACCCATAGGAATAT-AAAAATTAAAAAAGATTAATATTTATTTATGTTTAG-AAAAGA
* * *
152000 TCATTTCGTACCTTAATAGATACCCGAAAATATACAAAAAGTTTTTTCAAATCTTTTATACCCCT
1 TCATTTCGTACCTTAATAGATACCCGAAAAGATACGAAAAGTTTTTTGAAATCTTTTATACCCCT
* * *
152065 ACGGAAACCCATAGGAATATAAAAACTAAAAAAGATTAAAATTTATTTATGTTTAGAAAAGA
66 ACGGATACCCATAGGAATATAAAAATTAAAAAAGATTAATATTTATTTATGTTTAGAAAAGA
* * * *
152127 TCATTTCGTACCTTAATAGATATCCAAAAAGATACGAAAAGTTTTTTGAAATCTTTTACACCCGT
1 TCATTTCGTACCTTAATAGATACCCGAAAAGATACGAAAAGTTTTTTGAAATCTTTTATACCCCT
*
152192 ACGGATACCCATGGGAATATAAAAGATTAAAAATA-ATTAATATTT
66 ACGGATACCCATAGGAATATAAAA-ATTAAAAA-AGATTAATATTT
152237 GTTGTAATTA
Statistics
Matches: 208, Mismatches: 25, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
127 122 0.59
128 69 0.33
129 17 0.08
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (127 bp):
TCATTTCGTACCTTAATAGATACCCGAAAAGATACGAAAAGTTTTTTGAAATCTTTTATACCCCT
ACGGATACCCATAGGAATATAAAAATTAAAAAAGATTAATATTTATTTATGTTTAGAAAAGA
Found at i:154050 original size:164 final size:163
Alignment explanation
Indices: 153661--154282 Score: 654
Period size: 167 Copynumber: 3.8 Consensus size: 163
153651 AATTTAAACA
* * * * **
153661 AAAAAATCCAAAACTCATGAAAATGAATTAATTCTTT-AAAAATGAATTAATATG-AATCAAATG
1 AAAAAATCAAAAACTCATGAAAATGAATGAATT-TTTGAAAACTAAATTAATATGAAAT-AAACA
** * ** *
153724 ATGATATTTGATGAATTTAAAAAATTGAAAATGAAGAAAAATCCCCTCAAAAAAATTTACGGAAT
64 AAAATATTTGATGAATTTTAAAAATT-AAAAACAAGAAAAATCCCCTC-AAAAAATTTAC-GAGT
* * *
153789 AGAAAACACCGTATTTTGGAAAAAAAAAGGGATTTCAAGG
126 AGAAAACACCATA-TTTCG-AAAAAAAAGAGATTTCAAGG
* *
153829 AAAAAAT-AAAAAATGAATGAAAATGAATGAATTTTTG-AAACTAAATTAATATGAAATAAACAA
1 AAAAAATCAAAAACT-CATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAAATAAACAA
* *
153892 AGATATTTGATGAATTTTAAAAATTAAAAACAAAAAAAATCCCCTCAAAAAA-TTACAGAGTAGA
65 AAATATTTGATGAATTTTAAAAATTAAAAACAAGAAAAATCCCCTCAAAAAATTTAC-GAGTAGA
*
153956 AAACATCATATTTCGAAAAAAAAGAGATTTCAAGG
129 AAACACCATATTTCGAAAAAAAAGAGATTTCAAGG
* *
153991 AGAAAAATCAAAAACTCATGAAAATGAATGAAGTTTTGAAAAGTAAATTAATATGAAAT-AACTA
1 A-AAAAATCAAAAACTCATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAAATAAAC-A
* * *
154055 AAAATATTTGATGAATTTTAAAAATTAAAAACCTAGAAAAATCTCCTAAAAAAAATTTACGAAGT
64 AAAATATTTGATGAATTTTAAAAATTAAAAA-CAAGAAAAATCCCCT-CAAAAAATTTACG-AGT
**
154120 AGAAAACACCATATTTCGAGAAATGGAA-A-ATTTCAAGG
126 AGAAAACACCATATTTCGA-AAA-AAAAGAGATTTCAAGG
* * * * * *
154158 AAACTAATAAAAAAACTTATGAAAAATGAATGAATTTTTAAAAACTGAATTAATATGAAATAAAT
1 AAA-AAAT-CAAAAACTCATG-AAAATGAATGAATTTTTGAAAACTAAATTAATATGAAATAAAC
* * *
154223 AAAAATATTT-ATGAATTTTAAAAA-TAAAAATTAAG-AAAACCCTCCTAAAAAAATTTACGA
63 AAAAATATTTGATGAATTTTAAAAATTAAAAA-CAAGAAAAATCC-CCTCAAAAAATTTACGA
154283 AAAAAAACCC
Statistics
Matches: 392, Mismatches: 44, Indels: 39
0.83 0.09 0.08
Matches are distributed among these distances:
162 20 0.05
163 33 0.08
164 74 0.19
165 19 0.05
166 45 0.11
167 98 0.25
168 54 0.14
169 47 0.12
170 2 0.01
ACGTcount: A:0.55, C:0.09, G:0.11, T:0.26
Consensus pattern (163 bp):
AAAAAATCAAAAACTCATGAAAATGAATGAATTTTTGAAAACTAAATTAATATGAAATAAACAAA
AATATTTGATGAATTTTAAAAATTAAAAACAAGAAAAATCCCCTCAAAAAATTTACGAGTAGAAA
ACACCATATTTCGAAAAAAAAGAGATTTCAAGG
Found at i:159536 original size:88 final size:88
Alignment explanation
Indices: 159368--159588 Score: 246
Period size: 88 Copynumber: 2.5 Consensus size: 88
159358 TTTTATGAAA
* * * * * * *
159368 AACAAGGTTGGAGTAACCCGTCAGAATAATGGGGATGGAGTTT-CCCTAAAGATAAAATTCCACA
1 AACAGGGTTAGAGTATCCCCTCAGAATAGTAGGGATGGAGTTTCCCCCAAAGATAAAATTCCACA
* *
159432 AAATAAATTTGGATTTTTGTTAG
66 AAATAAATTTGAATTTTTCTTAG
* * * **
159455 AATAGGGTTAGAGTATCCCCTCGGAATAGTAGGGATGGAGTTTCCCCCAAAGGTAAAATTCCATG
1 AACAGGGTTAGAGTATCCCCTCAGAATAGTAGGGATGGAGTTTCCCCCAAAGATAAAATTCCACA
*
159520 AAGTAAATTTGAATTTTTCTTAG
66 AAATAAATTTGAATTTTTCTTAG
* * * * *
159543 AACGGGGTTGGAGTATCTCCTTAGAATAGTGGGGATGGAGCTTTCC
1 AACAGGGTTAGAGTATCCCCTCAGAATAGTAGGGATGGAG-TTTCC
159589 TAAAATTATA
Statistics
Matches: 110, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
87 35 0.32
88 70 0.64
89 5 0.05
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (88 bp):
AACAGGGTTAGAGTATCCCCTCAGAATAGTAGGGATGGAGTTTCCCCCAAAGATAAAATTCCACA
AAATAAATTTGAATTTTTCTTAG
Found at i:162083 original size:21 final size:21
Alignment explanation
Indices: 162027--162084 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
162017 TTTGAAGCAA
*
162027 GTATCGATACCTTCTGGACAT
1 GTATCGATACCTTTTGGACAT
162048 GTATCGATACCTTTTGGACAT
1 GTATCGATACCTTTTGGACAT
*
162069 GTATCGATACATTTTG
1 GTATCGATACCTTTTG
162085 CTAAAAATTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (21 bp):
GTATCGATACCTTTTGGACAT
Found at i:163649 original size:20 final size:20
Alignment explanation
Indices: 163606--163657 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
163596 CTTAACTGTT
* *
163606 TGTATCAATACA-CACAAGA
1 TGTATCGATACATCACAAAA
*
163625 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCACAAAA
163645 TGTATCGATACAT
1 TGTATCGATACAT
163658 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:169800 original size:13 final size:13
Alignment explanation
Indices: 169782--169820 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
169772 CAGCATTCTT
169782 TGTATCGATACAA
1 TGTATCGATACAA
*
169795 TGTATCGATACAG
1 TGTATCGATACAA
169808 TGTATCGATACAA
1 TGTATCGATACAA
169821 AGGATTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:172289 original size:13 final size:13
Alignment explanation
Indices: 172271--172295 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
172261 ATATTGCACA
172271 GTATCGATACATT
1 GTATCGATACATT
172284 GTATCGATACAT
1 GTATCGATACAT
172296 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:172420 original size:20 final size:20
Alignment explanation
Indices: 172377--172428 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
172367 CTTAACTGTT
*
172377 TGTATCGATACA-CACAAGA
1 TGTATCGATACATCACAAAA
*
172396 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCACAAAA
*
172416 TGTATTGATACAT
1 TGTATCGATACAT
172429 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:181012 original size:44 final size:44
Alignment explanation
Indices: 180959--181063 Score: 183
Period size: 44 Copynumber: 2.4 Consensus size: 44
180949 GATAGCTGAG
*
180959 TAGGGTGGTTGGAAATGAATGCTTGCTAGAGCTCAGGAGCAAAA
1 TAGGGTGGTTGGAAATGAATGCTTGCTAGAGCTCAAGAGCAAAA
*
181003 TAGGGTGGTTGGAAATGAATGCTTGCTAGAGCTCAAGAGCAGAA
1 TAGGGTGGTTGGAAATGAATGCTTGCTAGAGCTCAAGAGCAAAA
*
181047 TAGGGTGGTTGGGAATG
1 TAGGGTGGTTGGAAATG
181064 CATGGCTCAA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.30, C:0.10, G:0.37, T:0.24
Consensus pattern (44 bp):
TAGGGTGGTTGGAAATGAATGCTTGCTAGAGCTCAAGAGCAAAA
Found at i:181364 original size:20 final size:20
Alignment explanation
Indices: 181339--181407 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
181329 CCCAGAATGC
*
181339 ATCGATACAAAGCAAATTCT
1 ATCGATACAAAGAAAATTCT
** ** *
181359 ATCGATACATCTGGGAA-TGT
1 ATCGATACA-AAGAAAATTCT
181379 ATCGATACAAAGAAAATTCT
1 ATCGATACAAAGAAAATTCT
181399 ATCGATACA
1 ATCGATACA
181408 TCTAGGAATG
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
19 3 0.08
20 31 0.84
21 3 0.08
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (20 bp):
ATCGATACAAAGAAAATTCT
Found at i:181388 original size:40 final size:40
Alignment explanation
Indices: 181333--181427 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
181323 CAAAAACCCA
* * *
181333 GAATGCATCGATACAAAGCAAATTCTATCGATACATCTGG
1 GAATGTATCGATACAAAGAAAATTCTATCGATACATCTAG
181373 GAATGTATCGATACAAAGAAAATTCTATCGATACATCTAG
1 GAATGTATCGATACAAAGAAAATTCTATCGATACATCTAG
181413 GAATGTATCGATACA
1 GAATGTATCGATACA
181428 TTTACTTATG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (40 bp):
GAATGTATCGATACAAAGAAAATTCTATCGATACATCTAG
Found at i:181421 original size:20 final size:20
Alignment explanation
Indices: 181358--181428 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
181348 AAGCAAATTC
*
181358 TATCGATACATCTGGGAATG
1 TATCGATACATCTAGGAATG
* * *
181378 TATCGATACA--AAGAAAATTC
1 TATCGATACATCTAG-GAA-TG
181398 TATCGATACATCTAGGAATG
1 TATCGATACATCTAGGAATG
181418 TATCGATACAT
1 TATCGATACAT
181429 TTACTTATGT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
18 1 0.03
19 2 0.05
20 33 0.82
21 2 0.05
22 2 0.05
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (20 bp):
TATCGATACATCTAGGAATG
Found at i:182453 original size:65 final size:65
Alignment explanation
Indices: 182197--182547 Score: 422
Period size: 64 Copynumber: 5.4 Consensus size: 65
182187 TTAAATATGA
* * ** *
182197 TGCCACCAACTTCTGTGGGCTTTAAAAAGAAAAAGGAAAGGCCTTATACTCTTTGTGGACTAAAA
1 TGCCACCAACTTGTGTGGGCTTT-AAAA-AAAAAGGAAAGGCATCCTACTCTTTGAGGACTAAAA
182262 GG
64 GG
* * *
182264 TGCTACCAACTTGTGTGGGCTTTTAAAAAAGAA--AAAGGCATCCTACTCTTTGAGGACTAAAAA
1 TGCCACCAACTTGTGTGGGC-TTTAAAAAAAAAGGAAAGGCATCCTACTCTTTGAGGACTAAAAG
182327 G
65 G
* * * * *
182328 TGCCACCAACTTATGTGAGCTTT--TAAAAAAGGAAAAGGCATCCTGCTTTTTGAGGACTAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAAAAAAGG-AAAGGCATCCTACTCTTTGAGGACTAAAAG
182391 G
65 G
* *
182392 TGCCACCAACTTGTGTGGGCTTTAAAAAAAAAGGCAAGGCATCCTGCTCTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAAAAAAGGAAAGGCATCCTACTCTTTGAGGACTAAAAGG
* * * * *
182457 TGCCAACAACTTGTGTGGGCTTTGGAAAGAAAAAGGCAAGGCATCCTACTATTTGATGACTAAAA
1 TGCCACCAACTTGTGTGGGCTTT--AAAAAAAAAGGAAAGGCATCCTACTCTTTGAGGACTAAAA
182522 GG
64 GG
* *
182524 AGGCACCAACTTGTGTGGGCTTTA
1 TGCCACCAACTTGTGTGGGCTTTA
182548 GAAGAGTTGC
Statistics
Matches: 247, Mismatches: 29, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
61 5 0.02
63 3 0.01
64 92 0.37
65 52 0.21
66 12 0.05
67 80 0.32
68 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (65 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAAAAAAGGAAAGGCATCCTACTCTTTGAGGACTAAAAGG
Found at i:182565 original size:31 final size:32
Alignment explanation
Indices: 182527--182740 Score: 236
Period size: 31 Copynumber: 6.6 Consensus size: 32
182517 TAAAAGGAGG
*
182527 CACCAACTTGTGTGGGCTTTAG-AAGAGTTGC
1 CACCAACTTGTGTGGGCTTTAGAAAGGGTTGC
* *
182558 CACCAACTTATGTTGGCTTTAGAAAAAGGGTTGC
1 CACCAACTTGTGTGGGCTTTAG--AAAGGGTTGC
* * * *
182592 CATCTATTTGTGTGGGCATTAGAAAAAGGGTTGC
1 CACCAACTTGTGTGGGCTTTAG--AAAGGGTTGC
** *
182626 CACTGACTTGTGTAGGCTTTAG-AAGGGTTGC
1 CACCAACTTGTGTGGGCTTTAGAAAGGGTTGC
*
182657 CACCAACTTGTGTGGGCTTT-GGAAGGGTTGC
1 CACCAACTTGTGTGGGCTTTAGAAAGGGTTGC
* *
182688 CATCGACTTGTGTGGGCTTTAGAAAAGGGTTGC
1 CACCAACTTGTGTGGGCTTTAG-AAAGGGTTGC
*
182721 CACCAACTTGTGTGGCCTTT
1 CACCAACTTGTGTGGGCTTT
182741 CAAAAAAGTA
Statistics
Matches: 153, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
30 1 0.01
31 73 0.48
32 1 0.01
33 26 0.17
34 52 0.34
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (32 bp):
CACCAACTTGTGTGGGCTTTAGAAAGGGTTGC
Found at i:182832 original size:60 final size:61
Alignment explanation
Indices: 182742--182898 Score: 153
Period size: 60 Copynumber: 2.6 Consensus size: 61
182732 GTGGCCTTTC
* * * ***
182742 AAAAAA-GTACCACAGAGTTATGGA-GTTAAAAAGGTGTC-ACGGGGTTGTGAACTTAAAA-
1 AAAAAAGGTGCCACAGAGTTGTGGACTTTAAAAAGGTG-CAACAAAGTTGTGAACTTAAAAG
* *
182800 AAAAAAGGTGCCACAAAGTTGTGGACTTTAAAAAGGTGCAACAAAGTTGTGGACTTAAAAGG
1 AAAAAAGGTGCCACAGAGTTGTGGACTTTAAAAAGGTGCAACAAAGTTGTGAACTTAAAA-G
**
182862 AAAAAGAGAG-GCCATGGAGTTGTGGACTTTAAAAAGG
1 AAAAA-AG-GTGCCACAGAGTTGTGGACTTTAAAAAGG
182899 GTACCATGGA
Statistics
Matches: 81, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
58 6 0.07
59 16 0.20
60 27 0.33
62 5 0.06
63 26 0.32
64 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.27, T:0.21
Consensus pattern (61 bp):
AAAAAAGGTGCCACAGAGTTGTGGACTTTAAAAAGGTGCAACAAAGTTGTGAACTTAAAAG
Found at i:182857 original size:27 final size:28
Alignment explanation
Indices: 182801--182859 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
182791 AACTTAAAAA
*
182801 AAAAAGGTGCCACAAAGTTGTGGACTTT
1 AAAAAGGTGCAACAAAGTTGTGGACTTT
182829 AAAAAGGTGCAACAAAGTTGTGGAC-TT
1 AAAAAGGTGCAACAAAGTTGTGGACTTT
182856 AAAA
1 AAAA
182860 GGAAAAAGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 6 0.20
28 24 0.80
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (28 bp):
AAAAAGGTGCAACAAAGTTGTGGACTTT
Found at i:182938 original size:28 final size:29
Alignment explanation
Indices: 182873--182946 Score: 107
Period size: 28 Copynumber: 2.6 Consensus size: 29
182863 AAAAGAGAGG
*
182873 CCATGGAGTTGTGGACTTTAAAAAGGGTA
1 CCATGGAGTTGTGGACTTTAAAAACGGTA
*
182902 CCATGGAGTTGTAGACTTT-AAAACGGTA
1 CCATGGAGTTGTGGACTTTAAAAACGGTA
182930 CCACT-GAGTTGTGGACT
1 CCA-TGGAGTTGTGGACT
182947 AAAAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
CCATGGAGTTGTGGACTTTAAAAACGGTA
Found at i:192856 original size:14 final size:13
Alignment explanation
Indices: 192800--192857 Score: 55
Period size: 13 Copynumber: 4.3 Consensus size: 13
192790 TTGCCATTTA
*
192800 TCAAGAAATTATCG
1 TCAAGAAATT-TTG
*
192814 TCAAGAACTTTTG
1 TCAAGAAATTTTG
*
192827 TCGAG-AATCTTTG
1 TCAAGAAAT-TTTG
192840 TCAAGAAATTTTCG
1 TCAAGAAATTTT-G
192854 TCAA
1 TCAA
192858 TACGACCCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 2 0.06
13 17 0.47
14 17 0.47
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TCAAGAAATTTTG
Found at i:192896 original size:29 final size:29
Alignment explanation
Indices: 192864--193221 Score: 453
Period size: 28 Copynumber: 12.6 Consensus size: 29
192854 TCAATACGAC
192864 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
*
192893 CC-TTTCAAAGCCCACATGTCAGTGGCAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
*
192921 CCTTCTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
* *
192950 CC-TTTCAAGGCCCACAAGTCAGTAGCAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
*
192978 -CATTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
*
193006 CCTTTTCAAAGCCCACAAGTCAGTGACAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
*
193035 CCTTTTCAAAGCCCACAAGTCAGTGACAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
* *
193064 CCTTCTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
* * * *
193093 CCCTTT--AAGCCCATAAGTTAGTGG-AA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
* *
193119 CCTTTTCGAAGCCCATAAGTCAGTGGCA-
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
* * *
193147 CCCTTTCAAAGCCCACAAATCAATGGCAT
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
** *
193176 CCTTTT-AAAGCCCACAAGTTGGTGGCAA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCAT
*
193204 CCTTCTCTAAAGCCCACA
1 CCTTTTC-AAAGCCCACA
193222 CAAGTTGGTG
Statistics
Matches: 288, Mismatches: 32, Indels: 17
0.85 0.09 0.05
Matches are distributed among these distances:
26 6 0.02
27 17 0.06
28 136 0.47
29 119 0.41
30 10 0.03
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (29 bp):
CCTTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:193015 original size:85 final size:85
Alignment explanation
Indices: 192864--193221 Score: 470
Period size: 85 Copynumber: 4.2 Consensus size: 85
192854 TCAATACGAC
* *
192864 CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACATGTCAGTGGCATCCTTCTCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TTA
*
192929 AAGCCCACAAGTCAGTGGCAT
65 AAGCCCACAAGTCAGTGGCAA
* * *
192950 CC-TTTCAAGGCCCACAAGTCAGTAGCATCATTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTT-A
* *
193014 AAGCCCACAAGTCAGTGACAT
65 AAGCCCACAAGTCAGTGGCAA
* * *
193035 CCTTTTCAAAGCCCACAAGTCAGTGACATCCTTCTCAAAGCCCACAAGTCAGTGGCACCCCTTT-
1 CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTTTTA
* *
193099 AAGCCCATAAGTTAGTGG-AA
65 AAGCCCACAAGTCAGTGGCAA
* * * * *
193119 CCTTTTCGAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAATCAATGGCATCCTTTTAA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAA
**
193184 AGCCCACAAGTTGGTGGCAA
66 AGCCCACAAGTCAGTGGCAA
*
193204 CCTTCTCTAAAGCCCACA
1 CCTTTTC-AAAGCCCACA
193222 CAAGTTGGTG
Statistics
Matches: 237, Mismatches: 29, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
83 26 0.11
84 47 0.20
85 100 0.42
86 36 0.15
87 28 0.12
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (85 bp):
CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAA
AGCCCACAAGTCAGTGGCAA
Found at i:193229 original size:32 final size:31
Alignment explanation
Indices: 193176--193249 Score: 100
Period size: 32 Copynumber: 2.5 Consensus size: 31
193166 TCAATGGCAT
*
193176 CCTTTTAAAG-CC-CACAAGTTGGTGGCAAC
1 CCTTCTAAAGCCCACACAAGTTGGTGGCAAC
*
193205 CTTCTCTAAAGCCCACACAAGTTGGTGGCAAC
1 CCT-TCTAAAGCCCACACAAGTTGGTGGCAAC
193237 CCTTCTAAA-CCCA
1 CCTTCTAAAGCCCA
193250 ATGTCGCTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
29 2 0.05
30 10 0.26
31 8 0.21
32 19 0.49
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (31 bp):
CCTTCTAAAGCCCACACAAGTTGGTGGCAAC
Found at i:194246 original size:50 final size:50
Alignment explanation
Indices: 194181--194365 Score: 203
Period size: 50 Copynumber: 3.9 Consensus size: 50
194171 AAGTCACATT
*
194181 TTTTACCCAGATGTATCAATACATTTTTCAATGTATCGATACATTCTGTC
1 TTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
*
194231 TTTTACCCAGATGTATCGATATATTTTTCAATGTATCGATACA---TG--
1 TTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
** * *
194276 ---TA-TGA-ATGTATCGATAC-TTTCTTCAATGTATCGATATATTCTATC
1 TTTTACCCAGATGTATCGATACATTT-TTCAATGTATCGATACATTCTGTC
* *
194321 TTTTTACCTAGATGTATCGATACATTTTTCAATATATCGATACAT
1 -TTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACAT
194366 CTAGTTAAAA
Statistics
Matches: 111, Mismatches: 11, Indels: 25
0.76 0.07 0.17
Matches are distributed among these distances:
39 3 0.03
40 27 0.24
41 1 0.01
42 2 0.02
43 1 0.01
47 2 0.02
49 2 0.02
50 42 0.38
51 28 0.25
52 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (50 bp):
TTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
Found at i:194266 original size:20 final size:20
Alignment explanation
Indices: 194241--194315 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
194231 TTTTACCCAG
194241 ATGTATCGATATATTTTTCA
1 ATGTATCGATATATTTTTCA
* * * *
194261 ATGTATCGATACATGTATGA
1 ATGTATCGATATATTTTTCA
*
194281 ATGTATCGATACT-TTCTTCA
1 ATGTATCGATA-TATTTTTCA
194301 ATGTATCGATATATT
1 ATGTATCGATATATT
194316 CTATCTTTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 43 0.98
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (20 bp):
ATGTATCGATATATTTTTCA
Found at i:194359 original size:91 final size:90
Alignment explanation
Indices: 194191--194365 Score: 271
Period size: 91 Copynumber: 1.9 Consensus size: 90
194181 TTTTACCCAG
* *
194191 ATGTATCAATACATTTTTCAATGTATCGATACATTCTGTCTTTTACCCAGATGTATCGATATATT
1 ATGTATCAATACATTTTTCAATGTATCGATACATTCTATCTTTTACCCAGATGTATCGATACATT
*
194256 TTTCAATGTATCGATACATGTATGA
66 TTTCAATATATCGATACATGTATGA
* * *
194281 ATGTATCGATAC-TTTCTTCAATGTATCGATATATTCTATCTTTTTACCTAGATGTATCGATACA
1 ATGTATCAATACATTT-TTCAATGTATCGATACATTCTATC-TTTTACCCAGATGTATCGATACA
194345 TTTTTCAATATATCGATACAT
64 TTTTTCAATATATCGATACAT
194366 CTAGTTAAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
89 3 0.04
90 33 0.43
91 41 0.53
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (90 bp):
ATGTATCAATACATTTTTCAATGTATCGATACATTCTATCTTTTACCCAGATGTATCGATACATT
TTTCAATATATCGATACATGTATGA
Found at i:199656 original size:22 final size:21
Alignment explanation
Indices: 199613--199652 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
199603 TATTTTTATT
199613 TAAATTTAATTATAAAATATA
1 TAAATTTAATTATAAAATATA
199634 TAAATATTAA-TATAAAATA
1 TAAAT-TTAATTATAAAATA
199653 ATATTTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATTTAATTATAAAATATA
Found at i:200856 original size:2 final size:2
Alignment explanation
Indices: 200849--200877 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
200839 AACAGATTTA
200849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
200878 ATGAAATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:201319 original size:30 final size:30
Alignment explanation
Indices: 201260--201317 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
201250 AGATAATATC
*
201260 TTATTTAAATATAAATTAAAAGATAAAAAT
1 TTATTTAAATATAAATAAAAAGATAAAAAT
* *
201290 TTATTTAAGTAT-AATAAAAATATAAAAA
1 TTATTTAAATATAAATAAAAAGATAAAAA
201318 ATCACTCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (30 bp):
TTATTTAAATATAAATAAAAAGATAAAAAT
Found at i:202457 original size:5 final size:5
Alignment explanation
Indices: 202442--202481 Score: 71
Period size: 5 Copynumber: 7.8 Consensus size: 5
202432 ATATAGTTGC
202442 TTTTGA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
202482 TTTACTATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:203425 original size:20 final size:18
Alignment explanation
Indices: 203394--203455 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 18
203384 TGTATATTTT
203394 TTTAAA-TATTTACTATA
1 TTTAAATTATTTACTATA
203411 TTTAATACTTATTTA--ATA
1 TTTAA-A-TTATTTACTATA
203429 -TTAAATTATTTAACTTATA
1 TTTAAATTATTT-AC-TATA
203448 TTTAAATT
1 TTTAAATT
203456 TTTTTAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
15 6 0.16
16 2 0.05
17 9 0.24
18 4 0.11
19 3 0.08
20 13 0.35
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTAAATTATTTACTATA
Found at i:203792 original size:18 final size:17
Alignment explanation
Indices: 203766--203812 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
203756 TTAATAGCGA
*
203766 TTTATTATTTTTTAACAT
1 TTTAATATTTTTTAAC-T
*
203784 TTTAATATTTATTTGACT
1 TTTAATATTT-TTTAACT
203802 TTTAA-ATTTTT
1 TTTAATATTTTT
203813 GATATTCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 2 0.08
17 4 0.15
18 15 0.58
19 5 0.19
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTAATATTTTTTAACT
Found at i:204513 original size:13 final size:13
Alignment explanation
Indices: 204495--204519 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
204485 GTCTATTCGT
204495 ATTATATTATATG
1 ATTATATTATATG
204508 ATTATATTATAT
1 ATTATATTATAT
204520 TATAATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
ATTATATTATATG
Found at i:205150 original size:19 final size:18
Alignment explanation
Indices: 205128--205174 Score: 69
Period size: 17 Copynumber: 2.6 Consensus size: 18
205118 TTAAAAAAGT
205128 AATAAAGAAAATTTTAAAA
1 AATAAAGAAAA-TTTAAAA
205147 AATAAA-AAAATTTAAAA
1 AATAAAGAAAATTTAAAA
*
205164 AAAAAAGAAAA
1 AATAAAGAAAA
205175 AGTCCAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 12 0.46
18 8 0.31
19 6 0.23
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (18 bp):
AATAAAGAAAATTTAAAA
Found at i:205255 original size:13 final size:13
Alignment explanation
Indices: 205237--205262 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
205227 AATCCAGTTC
205237 TATCTATTTTTTT
1 TATCTATTTTTTT
205250 TATCTATTTTTTT
1 TATCTATTTTTTT
205263 GTTTATGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
TATCTATTTTTTT
Found at i:207455 original size:36 final size:33
Alignment explanation
Indices: 207372--207469 Score: 112
Period size: 36 Copynumber: 3.0 Consensus size: 33
207362 CTTTACAACA
*
207372 CTATC-TTTC-AAGGCTAAGATAGAAAC-CTCC
1 CTATCTTTTCAAAGGCTAAGATAGAACCTCTCC
**
207402 CTATCTTTTCACGGGCTAAGATAGAACCTCTCTC
1 CTATCTTTTCAAAGGCTAAGATAGAACCTCTC-C
*
207436 CTTATCTTTTTCAAAGGCTAAGATAGAACATCTC
1 C-TATC-TTTTCAAAGGCTAAGATAGAACCTCTC
207470 AATCACTTAG
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
30 5 0.09
31 4 0.07
32 14 0.25
33 3 0.05
34 2 0.04
35 4 0.07
36 24 0.43
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.32
Consensus pattern (33 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCC
Found at i:210378 original size:13 final size:13
Alignment explanation
Indices: 210360--210384 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
210350 ATTTTGCTTA
210360 GTATCGATACATT
1 GTATCGATACATT
210373 GTATCGATACAT
1 GTATCGATACAT
210385 AAAACTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:210982 original size:32 final size:34
Alignment explanation
Indices: 210936--211031 Score: 101
Period size: 32 Copynumber: 2.8 Consensus size: 34
210926 CAAGTGATTG
*
210936 AGAGATTCTATCTTAGCCTTGAAAGATA-G-TGT
1 AGAGGTTCTATCTTAGCCTTGAAAGATAGGTTGT
210968 AGAGGTTCTATCTTAGCCTTTGTAAAAGATAGGGTTGT
1 AGAGGTTCTATCTTAGCC-TTG--AAAGATA-GGTTGT
* *
211006 A-AGGTTATACCTTAGCCTT-AAAGATA
1 AGAGGTTCTATCTTAGCCTTGAAAGATA
211032 AACAATTCGA
Statistics
Matches: 55, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
32 17 0.31
33 10 0.18
35 7 0.13
36 2 0.04
37 15 0.27
38 4 0.07
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (34 bp):
AGAGGTTCTATCTTAGCCTTGAAAGATAGGTTGT
Found at i:212580 original size:21 final size:21
Alignment explanation
Indices: 212556--212616 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
212546 AATATTCTTA
* *
212556 AAAAGAAATTAAGTGAATTAG
1 AAAAGAAAATAAATGAATTAG
212577 AAAAGAAAATAAATGAATTAG
1 AAAAGAAAATAAATGAATTAG
* * *
212598 AAGAGATAAGAAATGAATT
1 AAAAGAAAATAAATGAATT
212617 GCAAGTGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (21 bp):
AAAAGAAAATAAATGAATTAG
Found at i:213930 original size:16 final size:18
Alignment explanation
Indices: 213893--213931 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
213883 CTTTAAATGA
*
213893 TCTTGTGCTGTTATTGAT
1 TCTTGTGCTGTAATTGAT
213911 TCTTGTGCT-TAATT-AT
1 TCTTGTGCTGTAATTGAT
213927 TCTTG
1 TCTTG
213932 ATTTTGATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 4 0.20
18 9 0.45
ACGTcount: A:0.13, C:0.13, G:0.18, T:0.56
Consensus pattern (18 bp):
TCTTGTGCTGTAATTGAT
Found at i:216911 original size:19 final size:19
Alignment explanation
Indices: 216887--216954 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
216877 AATTCAACAA
216887 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
216906 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
216921 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
216938 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
216955 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:216926 original size:13 final size:13
Alignment explanation
Indices: 216908--216932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
216898 ACATAAGTTT
216908 TGTATCGATACAA
1 TGTATCGATACAA
216921 TGTATCGATACA
1 TGTATCGATACA
216933 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:216930 original size:32 final size:32
Alignment explanation
Indices: 216889--216951 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
216879 TTCAACAATT
*
216889 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
216921 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
216952 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:219468 original size:27 final size:27
Alignment explanation
Indices: 219436--219503 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
219426 CACAATCGGG
*
219436 TACTCCAACCCCGTTA-ATCATCGGGGA
1 TACTCCAACCCCGTTATATCA-AGGGGA
* *
219463 TACTCCAACCCTGTTATTTTCAAGGGGA
1 TACTCCAACCCCGTTA-TATCAAGGGGA
219491 TACTCCAACCCCG
1 TACTCCAACCCCG
219504 ACTTTATTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.43
28 17 0.49
29 3 0.09
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (27 bp):
TACTCCAACCCCGTTATATCAAGGGGA
Found at i:219549 original size:51 final size:52
Alignment explanation
Indices: 219486--219708 Score: 243
Period size: 52 Copynumber: 4.3 Consensus size: 52
219476 TTATTTTCAA
* * *** *
219486 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTT-CATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCCACAATC
* * * *
219537 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCCACAATC
* * * * **
219589 GGGGATACTTCAACCCTGGTTTTATTTTCAAAACACCAATTTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCC-ACAATC
* *
219642 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTTCCACAATC
*
219694 GAGGATACTCCAACC
1 GGGGATACTCCAACC
219709 TCGTTATTTC
Statistics
Matches: 143, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
51 37 0.26
52 63 0.44
53 29 0.20
54 14 0.10
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (52 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCCACAATC
Found at i:219727 original size:28 final size:28
Alignment explanation
Indices: 219691--219765 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
219681 ATTTTTCACA
* *
219691 ATCGAGGATACTCCAA-CCTCGTTATTTC
1 ATCGGGGATACTCCAACCCT-GTTACTTC
*
219719 ATCGGGGATAGTCCAACCCTGTTACTTC
1 ATCGGGGATACTCCAACCCTGTTACTTC
***
219747 CGAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
219766 CGGCTTTATT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 36 0.92
29 3 0.08
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCTGTTACTTC
Found at i:219833 original size:107 final size:107
Alignment explanation
Indices: 219642--219841 Score: 242
Period size: 107 Copynumber: 1.9 Consensus size: 107
219632 TCCTTTAATC
* * *
219642 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
* *
219707 CCTCGTTATTTCATCGGGGATAGTCCAACCCTGTTACTTCCGA
66 CCCCGTTATTTCA-CGGGGATACTCCAACCCTGTTACTTCCGA
* * *** * * *
219750 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
219814 CCCCGTTATTTTCGA-GGGGATACTCCAA
66 CCCCGTTA-TTTC-ACGGGGATACTCCAA
219842 TCCCGATTTT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
107 51 0.66
108 25 0.32
109 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTCACGGGGATACTCCAACCCTGTTACTTCCGA
Found at i:221254 original size:13 final size:13
Alignment explanation
Indices: 221236--221260 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
221226 ATTTTGCTTA
221236 GTATCGATACATT
1 GTATCGATACATT
221249 GTATCGATACAT
1 GTATCGATACAT
221261 AAACTGGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:222767 original size:13 final size:12
Alignment explanation
Indices: 222744--222773 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
222734 AATTTGGCTA
222744 GAAAATATGGTT
1 GAAAATATGGTT
222756 GAAAAGTATGGTT
1 GAAAA-TATGGTT
222769 GAAAA
1 GAAAA
222774 AGGATTGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (12 bp):
GAAAATATGGTT
Found at i:223312 original size:70 final size:71
Alignment explanation
Indices: 223187--223320 Score: 180
Period size: 70 Copynumber: 1.9 Consensus size: 71
223177 CATTTTTTAA
* * * * * *
223187 TGTATCAATACATCTAGGCAAAAAGACAGAATGTATTGATACATTCATACATGTATCGATACATT
1 TGTATCAATACATCTAAGCAAAAAGACAGAATGTATCGATACATTAAAAAATGTATCCATACATT
223252 GAAAAG
66 GAAAAG
* * *
223258 TGTATCGATACATCTAAG-TAAAAGATAGAATGTATCGATACATTAAAAAATGTATCCATACAT
1 TGTATCAATACATCTAAGCAAAAAGACAGAATGTATCGATACATTAAAAAATGTATCCATACAT
223321 CTGGATAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
70 38 0.70
71 16 0.30
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.29
Consensus pattern (71 bp):
TGTATCAATACATCTAAGCAAAAAGACAGAATGTATCGATACATTAAAAAATGTATCCATACATT
GAAAAG
Found at i:223576 original size:36 final size:36
Alignment explanation
Indices: 223529--223599 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
223519 TTGGGCGAGA
*
223529 GTAGTACTAGGATGGGTAACCTCCTGGGAAGTCCTC
1 GTAGTACTAGGATGGGTAACCTCCTAGGAAGTCCTC
* *
223565 GTAGTGCTAGGATGGGTAATCTCCTAGGAAGTCCT
1 GTAGTACTAGGATGGGTAACCTCCTAGGAAGTCCT
223600 AGTGTTGCAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (36 bp):
GTAGTACTAGGATGGGTAACCTCCTAGGAAGTCCTC
Found at i:223793 original size:20 final size:21
Alignment explanation
Indices: 223768--223819 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
223758 GTTGGGCTCA
223768 ATGTATCGATACT-ATTCACC
1 ATGTATCGATACTAATTCACC
* *
223788 ATGTATCAATA-TAATTCATC
1 ATGTATCGATACTAATTCACC
223808 ATGTATCGATAC
1 ATGTATCGATAC
223820 AATATATCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (21 bp):
ATGTATCGATACTAATTCACC
Found at i:224064 original size:20 final size:21
Alignment explanation
Indices: 224039--224082 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
224029 GATATTTTGA
224039 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
*
224059 ATTATTTTTATGCTTTAAAAAC
1 ATTATTTTTA-GCTTGAAAAAC
224081 AT
1 AT
224083 CTATACTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
22 11 0.52
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.48
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:227152 original size:21 final size:21
Alignment explanation
Indices: 227128--227184 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
227118 TTTTATTAGT
*
227128 TAACTCA-TCATTTTCATTTTG
1 TAACTCACTCATTTTC-TTTTC
*
227149 TAACTCACTTATTTTCTTTTC
1 TAACTCACTCATTTTCTTTTC
*
227170 TAACTCATTCATTTT
1 TAACTCACTCATTTT
227185 ATCCTCTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 24 0.77
22 7 0.23
ACGTcount: A:0.23, C:0.21, G:0.02, T:0.54
Consensus pattern (21 bp):
TAACTCACTCATTTTCTTTTC
Found at i:228784 original size:32 final size:34
Alignment explanation
Indices: 228739--228831 Score: 113
Period size: 36 Copynumber: 2.8 Consensus size: 34
228729 CAACACTATC
228739 TTTC-AAGGCTAAGATAGAAACCTC-CC-TATC-T
1 TTTCAAAGGCTAAGATAG-AACCTCTCCTTATCGT
**
228770 TTTCACGGGCTAAGATAGAACCTTTCTCCTTATCGT
1 TTTCAAAGGCTAAGATAGAACC--TCTCCTTATCGT
228806 TTTCAAAGGCTAAGATAGAACCTCTC
1 TTTCAAAGGCTAAGATAGAACCTCTC
228832 AATCACTTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
31 8 0.15
32 11 0.21
33 2 0.04
34 6 0.12
35 4 0.08
36 21 0.40
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (34 bp):
TTTCAAAGGCTAAGATAGAACCTCTCCTTATCGT
Found at i:229284 original size:20 final size:20
Alignment explanation
Indices: 229259--229311 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
229249 TGTGCTCAAT
229259 GTATCGATACAATTCACCAG
1 GTATCGATACAATTCACCAG
* *
229279 GTATCGATACAATTCATCAT
1 GTATCGATACAATTCACCAG
*
229299 ATATCGATACAAT
1 GTATCGATACAAT
229312 GTATCGAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATTCACCAG
Done.