genome.fa.s871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold871
Parameters: 2 7 7 80 10 50 1000
Length:  93194

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305--344	19	2.1	19	90	9	64	65	0	0	35	0.93
11645--11678	14	2.4	14	90	0	50	35	0	0	64	0.94
12087--12129	18	2.3	18	84	11	52	27	0	0	72	0.85
12271--12321	2	25.5	2	100	0	102	50	0	0	49	1.00
12694--12738	23	2.0	23	86	0	63	46	4	0	48	1.22
12790--12855	28	2.4	28	80	12	82	65	1	0	33	1.02
12790--12855	27	2.4	27	84	5	87	65	1	0	33	1.02
13087--13136	15	3.2	15	77	5	55	42	0	6	52	1.26
13082--13152	29	2.3	32	83	9	85	45	1	5	47	1.35
14046--14094	15	3.3	14	78	13	53	57	0	0	42	0.99
14213--14251	19	2.1	19	85	9	53	69	0	0	30	0.89
17237--17278	22	1.9	22	90	9	68	30	19	7	42	1.78
19811--19843	12	2.6	13	85	9	50	36	0	0	63	0.95
19945--19969	12	2.1	12	100	0	50	28	8	8	56	1.57
22575--22619	23	2.0	23	100	0	90	22	4	13	60	1.51
38357--38438	32	2.6	32	80	3	96	52	2	4	40	1.36
39650--39686	5	7.2	5	90	3	56	21	0	2	75	0.92
39953--40014	23	2.7	24	80	9	58	54	0	1	43	1.09
40058--40087	9	3.2	9	95	4	51	23	0	0	76	0.78
40056--40104	19	2.4	21	76	16	57	30	0	0	69	0.89
40075--40124	17	3.0	17	72	16	50	40	0	0	60	0.97
40095--40131	18	2.1	18	89	0	56	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39139--40722	807	2.0	809	84	5	2092	37	5	9	47	1.60
40863--40888	3	8.7	3	100	0	52	30	0	0	69	0.89
41081--41151	23	3.0	22	74	21	63	47	1	0	50	1.09
41072--41154	30	2.9	30	73	21	88	46	1	0	51	1.08
42355--42423	30	2.3	30	80	5	77	33	11	10	44	1.74
42989--43029	14	3.0	14	85	3	57	34	0	0	65	0.93
43010--43090	36	2.2	37	78	10	87	50	0	0	49	1.00
44758--44824	35	1.9	35	90	0	107	38	28	4	28	1.76
49099--49202	19	5.7	19	81	15	112	35	10	16	37	1.83
49140--49210	32	2.2	32	87	0	106	33	9	16	39	1.82
49232--49299	20	3.8	20	74	25	87	32	14	11	41	1.82
49254--49280	13	2.1	13	100	0	54	29	14	14	40	1.86
49234--49299	33	2.0	33	100	0	132	30	15	12	42	1.83
51493--51729	51	4.6	51	75	3	226	28	25	12	33	1.92
51663--51813	79	1.9	79	86	2	214	25	25	13	34	1.93
63931--63955	12	2.1	12	100	0	50	32	24	36	8	1.84
64110--64158	1	49.0	1	79	0	53	89	6	2	2	0.62
64109--64158	11	4.6	11	90	5	66	88	8	2	2	0.68
64110--64147	18	2.2	17	95	4	67	92	7	0	0	0.40
65161--65245	28	3.0	29	61	19	70	27	30	21	21	1.98
65130--65852	116	6.2	116	84	9	859	26	27	20	26	1.99
65130--65852	61	12.4	60	85	8	835	26	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66649--66738	19	5.1	18	74	22	84	36	12	15	35	1.85
66695--66752	13	4.0	13	74	23	53	34	15	15	34	1.89
66676--66751	32	2.4	32	95	0	134	32	14	17	35	1.90
69155--69390	51	4.6	51	77	7	255	28	24	13	33	1.93
69322--69474	79	1.9	79	91	0	252	26	24	15	33	1.95
75112--75168	2	28.5	2	100	0	114	49	0	0	50	1.00
77493--77538	22	2.1	22	100	0	92	26	0	50	23	1.50
78258--78604	90	3.9	90	84	4	438	44	8	12	34	1.72
78542--78669	67	1.9	68	87	4	188	46	9	12	32	1.74
78457--78758	159	1.9	157	85	5	421	45	8	11	33	1.72
78611--78811	92	2.2	91	82	6	237	43	8	16	30	1.78
79242--79564	163	2.0	163	100	0	646	40	11	12	34	1.79
80782--80829	23	2.1	23	88	7	71	31	0	0	68	0.90
81493--81538	3	15.3	3	100	0	92	34	0	0	65	0.93
81573--81602	15	2.0	15	93	0	51	43	0	0	56	0.99
81561--81621	20	3.1	20	73	19	56	47	0	0	52	1.00
81952--82013	23	2.7	23	78	11	74	59	1	0	38	1.07
83870--83905	16	2.1	18	90	10	58	55	0	2	41	1.14
84731--84793	25	2.5	24	75	7	63	46	4	0	49	1.23
85186--85254	2	36.5	2	78	16	67	43	2	1	52	1.25
85274--85317	21	2.1	21	91	0	70	54	0	4	40	1.21
86323--86360	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86517--86587	30	2.4	30	80	17	85	61	1	5	30	1.27
86577--86653	32	2.4	32	84	6	93	53	5	1	40	1.32
88222--88285	20	3.2	20	88	0	92	39	4	45	10	1.60
88362--88432	27	2.6	27	86	6	90	46	22	7	23	1.76
90802--90861	26	2.3	26	85	8	77	25	5	18	51	1.66

Tables:   1

The End!