genome.fa.s874.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold874
Parameters: 2 7 7 80 10 50 1000
Length:  104557

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1399--1474	33	2.3	33	81	2	82	48	30	10	10	1.71
1652--1695	22	2.0	22	100	0	88	50	9	4	36	1.55
2608--2660	18	2.9	18	83	13	65	52	1	1	43	1.23
2614--2669	20	2.9	19	87	10	71	53	1	1	42	1.21
4468--4509	2	21.0	2	100	0	84	50	0	0	50	1.00
4666--4695	2	15.0	2	100	0	60	50	0	0	50	1.00
5126--5161	3	12.0	3	88	11	56	66	0	2	30	1.06
6462--6501	21	1.9	21	85	10	55	47	0	5	47	1.24
7030--7072	19	2.3	19	87	0	59	65	0	0	34	0.93
7312--7338	2	13.5	2	100	0	54	51	0	0	48	1.00
7515--7557	21	2.0	23	86	9	63	51	0	0	48	1.00
7938--8016	20	4.0	20	77	8	81	44	0	5	50	1.24
8098--8145	18	2.5	21	83	16	68	31	0	0	68	0.90
8115--8157	13	3.2	13	86	6	59	37	2	0	60	1.10
9189--9229	3	14.0	3	84	5	57	29	31	2	36	1.71
10095--10142	21	2.2	21	85	3	60	43	6	4	45	1.48
10712--10765	28	1.9	28	92	0	90	38	12	25	22	1.90
21210--21273	33	1.9	33	87	0	92	39	17	21	21	1.93
26220--26285	33	2.0	33	93	0	114	39	18	21	21	1.93
38111--38200	1	90.0	1	77	0	72	0	7	5	86	0.70
38111--38199	32	2.7	33	93	6	155	0	7	5	86	0.70
49460--49588	52	2.5	52	94	0	222	31	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49460--49608	52	2.9	51	87	4	210	32	16	16	34	1.91
49597--49621	13	1.9	13	100	0	50	36	16	16	32	1.90
49662--49728	33	2.0	33	88	0	98	40	14	11	32	1.83
49684--49708	13	1.9	13	100	0	50	32	16	16	36	1.90
50495--51469	92	10.5	93	89	5	1125	30	17	25	25	1.97
50822--50889	21	3.2	21	64	32	54	30	17	26	25	1.97
50440--51464	324	3.1	324	90	5	1482	31	17	25	25	1.97
51146--51213	21	3.2	20	66	25	50	29	16	27	26	1.97
51462--51587	33	4.0	31	79	13	141	17	18	37	26	1.93
51462--51567	33	3.3	32	85	7	153	17	18	34	28	1.94
51571--52245	34	20.0	34	80	10	735	32	12	34	21	1.90
51571--52245	69	10.0	68	80	11	735	32	12	34	21	1.90
51776--51836	28	2.2	27	88	2	86	32	13	31	22	1.92
51571--52270	167	4.2	169	80	12	684	31	12	34	21	1.90
51976--52072	28	3.2	29	80	12	97	28	12	36	22	1.91
52147--52207	28	2.2	27	82	2	68	29	13	34	22	1.92
52215--52394	30	5.9	29	87	6	216	28	17	30	23	1.97
60601--60729	52	2.5	52	93	0	213	31	17	16	35	1.92
60601--60749	52	2.9	51	86	4	201	32	16	16	34	1.92
60738--60762	13	1.9	13	100	0	50	36	16	16	32	1.90
60803--60869	33	2.0	33	88	0	98	40	14	11	32	1.83
60825--60849	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62995--63046	21	2.5	21	81	6	61	34	3	17	44	1.67
65107--65153	21	2.2	21	92	0	76	27	12	19	40	1.88
69010--69130	61	2.0	61	96	0	224	38	12	20	28	1.89
75578--75628	23	2.2	23	79	6	59	13	11	0	74	1.07
76593--76643	20	2.5	21	87	3	68	39	5	17	37	1.74
76707--76820	52	2.2	51	88	1	165	31	17	11	39	1.85
84816--84882	33	2.0	33	88	0	98	34	11	13	40	1.81
84836--84860	13	1.9	13	100	0	50	36	16	16	32	1.90
84926--84950	13	1.9	13	100	0	50	32	16	16	36	1.90
84959--85079	52	2.3	52	91	0	197	33	16	18	31	1.93
94520--94611	27	3.4	25	75	14	69	77	9	2	10	1.08
94550--94601	6	7.7	7	83	14	65	76	11	0	11	1.01
94549--94595	13	3.3	15	82	14	64	76	12	0	10	1.02
94548--94603	21	2.6	21	88	2	85	78	10	0	10	0.96
94564--94609	21	2.2	21	88	0	65	78	8	2	10	1.05
94921--94985	21	3.0	22	82	4	71	12	1	9	76	1.07
94913--94973	27	2.3	27	82	0	77	9	1	8	80	0.98
94930--95002	27	2.7	27	79	12	80	12	1	10	75	1.11
101629--101662	16	2.1	17	88	5	52	26	8	8	55	1.59
104289--104402	49	2.3	52	84	7	155	32	17	15	34	1.92
104411--104435	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1

The End!