genome.fa.s876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold876
Parameters: 2 7 7 80 10 50 1000
Length:  74101

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1707--1958	90	2.8	90	84	0	324	27	26	13	32	1.94
2602--2739	43	3.2	43	77	7	156	16	27	18	37	1.92
2599--2791	43	4.6	41	75	9	138	16	26	17	39	1.91
2602--2833	85	2.7	86	77	7	206	16	26	17	39	1.91
2924--3016	41	2.2	42	79	11	102	20	19	17	43	1.89
3458--3660	43	4.8	41	71	11	131	21	30	17	31	1.96
3436--3648	85	2.5	85	80	5	218	21	30	17	31	1.96
3720--3843	42	2.9	43	81	2	142	20	25	14	38	1.91
3658--3828	43	4.0	42	77	3	144	21	26	15	36	1.93
3869--4460	167	3.5	168	84	4	728	19	24	12	43	1.86
3926--4454	84	6.3	83	71	5	267	19	24	12	43	1.85
5204--5269	33	2.1	30	88	8	96	33	13	18	34	1.90
5207--5268	13	3.7	17	75	22	60	30	12	19	37	1.89
5302--5354	20	2.6	21	81	3	72	30	15	11	43	1.81
5342--5366	13	1.9	13	100	0	50	36	16	16	32	1.90
7203--7537	165	2.0	164	83	8	421	25	10	8	55	1.61
8781--8838	13	4.0	13	76	23	62	29	17	15	37	1.90
8794--8856	19	3.6	19	76	24	84	28	19	15	36	1.92
8781--8856	32	2.4	32	100	0	152	28	18	15	36	1.92
8877--8952	21	3.7	21	82	3	109	28	18	11	40	1.86
8897--8970	20	3.7	20	81	3	103	31	20	13	35	1.91
8877--8970	41	2.3	41	100	0	188	29	19	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9931--10523	168	3.5	168	86	2	753	42	12	25	19	1.86
10019--10489	84	5.6	84	70	5	261	43	12	25	18	1.85
10548--10727	43	4.2	42	74	5	146	36	15	26	21	1.93
10740--11363	42	14.8	41	66	9	220	34	16	28	20	1.94
10744--10964	85	2.6	85	82	5	243	32	18	28	20	1.96
10732--11173	43	10.5	43	68	10	182	34	16	28	20	1.95
10744--11002	85	3.1	85	79	3	211	32	16	29	20	1.95
10831--11210	208	1.8	208	81	6	475	33	16	29	20	1.94
11557--11793	43	5.6	42	74	7	131	41	18	25	15	1.89
11645--11784	43	3.2	45	78	10	141	40	18	26	15	1.90
12434--12688	90	2.8	90	82	0	312	31	12	26	28	1.93
17853--18184	155	2.1	154	85	4	447	38	20	17	23	1.93
19604--19660	20	2.8	20	91	0	87	29	17	10	42	1.83
19572--19708	71	1.9	71	86	2	195	28	18	10	42	1.84
23167--23211	21	2.1	21	84	8	56	22	20	4	53	1.63
25424--25449	13	2.0	13	100	0	52	30	15	15	38	1.88
25405--25467	32	2.0	32	87	6	92	28	14	17	39	1.89
25405--25474	19	4.0	18	74	24	60	27	12	20	40	1.88
30910--30943	16	2.1	16	88	0	50	0	20	2	76	0.92
31240--31293	28	2.0	28	85	3	74	27	3	1	66	1.19
31240--31308	28	2.5	27	80	15	70	27	2	1	68	1.13
31828--32031	42	4.9	42	78	2	196	39	17	27	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31842--32073	84	2.8	84	82	2	234	40	18	25	15	1.90
31916--32072	42	3.7	42	77	6	165	44	21	22	12	1.84
31876--32155	42	6.8	41	72	14	157	42	16	24	16	1.88
31874--32275	84	4.8	84	78	7	304	43	15	23	17	1.88
32599--32909	42	7.4	42	75	5	200	39	14	27	17	1.89
32603--32870	126	2.1	125	81	2	304	40	14	27	17	1.88
32600--32829	84	2.7	83	76	4	221	40	14	28	16	1.88
32768--32929	83	1.9	84	82	3	202	38	14	27	19	1.91
32645--32911	125	2.1	126	77	4	270	41	15	25	16	1.88
32600--33043	209	2.1	210	78	5	459	40	14	25	18	1.89
32982--33162	42	4.3	42	78	6	136	41	16	23	18	1.89
33384--33452	29	2.3	30	77	2	77	50	8	17	23	1.73
33432--34179	60	12.6	60	74	5	433	42	10	22	23	1.85
33655--33880	30	7.5	30	70	9	95	43	9	20	26	1.82
33816--33880	31	2.1	31	82	2	78	44	4	18	32	1.70
33635--33966	121	2.7	121	75	4	267	42	9	22	25	1.83
33877--34167	115	2.5	115	82	4	309	43	10	22	22	1.84
33968--34330	30	12.2	30	66	13	115	44	12	21	20	1.85
34087--34254	91	1.8	91	82	7	216	44	11	23	20	1.85
34162--34330	61	2.8	60	79	6	171	42	15	21	20	1.89
35125--35165	10	4.1	10	87	12	66	87	0	12	0	0.53
35125--35161	11	3.5	11	88	3	58	89	0	10	0	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35737--35889	43	3.6	44	79	8	136	16	22	16	43	1.88
35730--36002	42	6.4	42	75	7	221	18	24	16	39	1.91
35730--36001	85	3.2	84	77	7	264	18	25	16	40	1.91
39655--39836	91	2.0	91	87	0	265	36	11	16	35	1.85
40487--40577	45	2.0	45	91	0	146	54	9	14	20	1.68
41484--41523	18	2.2	19	86	4	55	37	10	25	27	1.88
41754--41778	2	12.5	2	100	0	50	48	0	0	52	1.00
43935--43988	20	2.7	20	88	2	81	33	16	11	38	1.84
48575--48612	20	1.9	20	84	10	51	42	7	7	42	1.63
52152--52203	20	2.6	20	90	6	79	42	11	13	32	1.80
57999--58052	20	2.7	20	88	2	81	35	18	9	37	1.83
58400--58742	155	2.2	155	79	5	363	40	21	14	23	1.90
59014--59087	20	3.7	20	81	3	103	35	13	20	31	1.91
59032--59107	21	3.7	21	82	3	109	40	11	18	28	1.86
59014--59107	41	2.3	41	100	0	188	38	12	19	29	1.89
59146--59171	13	2.0	13	100	0	52	38	15	15	30	1.88
61386--61430	21	2.1	21	84	8	56	53	4	20	22	1.63
65268--65347	20	3.8	20	72	15	70	25	15	15	45	1.84
65333--65371	13	3.0	13	96	0	69	30	17	15	35	1.91

Tables:   1

The End!