genome.fa.s881.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold881
Parameters: 2 7 7 80 10 50 1000
Length:  21956

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--320	30	10.6	29	77	8	205	27	28	16	27	1.97
2--369	30	12.3	28	75	11	129	29	29	15	25	1.96
9--138	57	2.2	56	84	8	154	28	27	19	24	1.98
2--160	86	1.8	86	85	2	221	28	28	17	25	1.98
155--226	35	2.1	35	86	2	101	22	31	9	36	1.87
217--369	30	5.3	29	85	7	179	35	29	15	19	1.93
390--571	48	3.9	46	80	8	217	28	24	16	30	1.96
390--575	43	4.1	44	80	7	180	27	24	16	31	1.96
756--822	33	2.0	33	85	0	89	34	11	13	40	1.81
839--897	21	2.8	21	100	0	118	38	16	10	33	1.83
884--908	13	1.9	13	100	0	50	32	16	16	36	1.90
8076--8127	1	52.0	1	76	0	50	88	7	1	1	0.66
8078--8127	10	4.8	10	87	5	64	88	8	2	2	0.68
9414--9632	33	6.7	33	73	16	186	22	32	11	33	1.90
9376--9632	64	3.9	68	79	11	218	22	32	11	33	1.90
9403--9619	34	6.5	33	74	15	189	23	33	10	32	1.89
9639--9793	33	4.8	32	85	5	215	30	31	18	20	1.96
9638--9793	64	2.4	64	87	2	233	30	32	17	19	1.96
9798--10164	43	8.1	43	76	11	358	25	24	18	31	1.97
9799--10208	92	4.4	92	89	2	615	25	24	18	31	1.97
10118--10271	52	2.9	53	77	4	166	24	22	14	37	1.92
10286--10776	49	10.2	49	79	11	525	24	25	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10390--10767	43	8.1	43	76	15	283	24	25	18	31	1.98
10342--10776	92	4.6	92	84	7	523	24	25	18	31	1.97
10618--10767	52	2.9	52	93	0	255	21	24	19	34	1.96
11609--11707	20	5.7	20	69	30	100	35	12	18	34	1.88
11630--11720	13	5.9	13	69	30	56	36	13	17	32	1.88
11610--11741	33	4.0	33	98	1	248	35	12	17	34	1.87
11632--11773	66	2.2	66	81	7	155	38	14	14	32	1.86
11783--11807	13	1.9	13	100	0	50	40	16	8	36	1.77
11796--11944	52	2.9	50	86	6	199	36	18	14	30	1.91
15261--15300	19	2.2	19	86	4	55	45	0	2	52	1.14
15261--15312	18	2.8	19	80	13	56	38	0	5	55	1.24
15660--15695	16	2.1	18	90	10	58	63	0	5	30	1.17
19598--19651	2	27.0	2	84	0	72	48	7	0	44	1.31

Tables:   1

The End!