genome.fa.s882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold882
Parameters: 2 7 7 80 10 50 1000
Length:  46338

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2538--2591	21	2.5	22	76	11	58	48	1	3	46	1.30
13103--13128	11	2.4	11	100	0	52	84	0	7	7	0.77
14420--15657	92	13.3	92	80	7	1268	24	29	16	30	1.96
14420--15657	281	4.4	274	82	7	1149	24	29	16	30	1.96
14418--15657	373	3.3	373	94	1	2062	24	29	16	30	1.96
15018--15657	61	10.3	61	77	10	245	24	28	16	29	1.97
15637--15680	23	1.9	23	85	0	61	29	31	20	18	1.96
15384--15716	156	2.2	152	82	6	408	25	29	15	29	1.96
15385--15753	156	2.4	153	81	7	360	24	30	15	29	1.96
15662--16191	36	15.8	33	79	13	413	20	34	13	32	1.91
15660--16157	100	5.0	99	82	9	411	20	34	13	31	1.91
15721--16183	136	3.4	136	89	5	685	19	34	13	32	1.91
16193--16329	33	4.2	33	85	7	201	27	33	17	21	1.96
16080--16246	70	2.4	67	74	16	153	22	34	13	28	1.93
16193--16336	65	2.2	64	88	8	213	28	34	17	20	1.95
16375--16735	43	8.0	43	81	11	402	25	23	18	31	1.97
16324--16792	92	5.1	92	88	2	672	25	23	17	32	1.97
16569--16637	22	3.2	22	61	19	54	28	23	17	30	1.97
16324--16792	185	2.5	185	88	2	692	25	23	17	32	1.97
16693--17106	52	7.8	54	76	13	188	24	24	16	34	1.95
16601--17104	266	1.9	263	89	2	785	24	24	16	34	1.96
16742--16963	116	1.9	119	80	5	261	25	24	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16916--17005	43	2.1	43	91	0	144	25	24	18	31	1.98
17960--18053	32	2.9	32	96	1	170	34	11	18	36	1.87
17958--18053	13	5.7	18	71	28	86	33	11	17	37	1.86
18096--18120	13	1.9	13	100	0	50	32	16	16	36	1.90
24402--24465	29	2.1	32	83	13	91	35	0	10	53	1.36
27275--27329	20	2.5	24	82	14	73	49	0	0	50	1.00
28412--28442	13	2.4	13	94	0	53	61	0	0	38	0.96
28889--29481	126	4.7	126	86	4	725	20	15	28	35	1.94
29478--30073	198	3.0	198	97	0	1104	21	17	30	31	1.96
30779--30815	17	2.1	19	90	10	60	56	0	2	40	1.13
30776--30820	19	2.3	21	78	21	62	53	0	2	44	1.13
30806--30849	22	2.0	22	86	8	63	63	0	0	36	0.95
31396--31432	19	1.9	19	88	0	56	54	0	0	45	1.00
33306--33346	22	1.9	22	85	5	57	56	0	0	43	0.99
34654--34873	34	6.5	34	85	3	275	41	25	7	25	1.81
34653--34873	102	2.2	101	86	1	325	41	25	7	25	1.81
39619--39657	20	2.0	20	85	14	55	41	10	5	43	1.61
39826--39885	30	2.0	31	83	9	79	35	1	5	58	1.30
41867--41995	68	1.9	68	81	15	160	52	2	2	42	1.26
42512--42870	120	3.0	116	81	12	405	43	3	1	50	1.30
42564--42912	120	2.9	115	79	14	361	42	3	1	52	1.28
43444--44569	181	6.2	184	91	2	1588	41	8	16	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43436--44569	92	12.5	92	88	3	1570	41	8	16	33	1.78
44495--44654	70	2.3	69	93	2	277	43	8	17	31	1.78
44495--44697	68	3.0	67	81	11	232	42	7	17	32	1.78

Tables:   1

The End!