genome.fa.s884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold884
Parameters: 2 7 7 80 10 50 1000
Length:  70550

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1448--1492	21	2.1	21	84	8	56	22	20	4	53	1.63
3709--3734	13	2.0	13	100	0	52	30	15	15	38	1.88
5057--5091	15	2.3	15	90	0	52	45	0	25	28	1.54
7545--7637	20	4.6	20	77	10	91	38	15	16	30	1.89
7583--7658	21	3.7	21	82	3	109	40	11	18	28	1.86
7565--7658	41	2.3	41	98	0	179	39	12	18	29	1.88
7565--7638	20	3.7	20	80	3	94	36	13	18	31	1.90
7697--7722	13	2.0	13	100	0	52	38	15	15	30	1.88
9936--9980	21	2.1	21	84	8	56	53	4	20	22	1.63
11793--11822	15	2.0	15	93	0	51	50	16	20	13	1.78
11782--11822	15	2.7	16	81	11	50	46	17	19	17	1.85
13829--13906	20	3.6	21	74	15	70	26	14	15	43	1.85
13895--13932	13	2.9	13	96	0	67	34	18	15	31	1.92
14968--15031	34	1.9	33	90	6	103	45	14	12	28	1.81
17228--17277	21	2.3	21	80	10	57	56	4	18	22	1.58
19074--19104	15	2.1	15	93	0	53	48	16	22	12	1.80
21186--21224	13	3.0	13	88	0	60	33	17	20	28	1.96
23646--23701	20	2.8	19	89	5	76	39	14	16	30	1.88
23754--23817	21	3.6	19	72	27	68	45	15	12	26	1.82
23771--23796	13	2.0	13	100	0	52	38	15	15	30	1.88
23754--23817	34	1.9	33	93	6	112	45	15	12	26	1.82
29142--29475	79	4.2	79	85	1	402	34	13	23	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29415--29526	51	2.2	51	88	3	163	32	13	24	30	1.93
29332--29605	130	2.1	130	97	0	512	32	13	25	28	1.94
29253--29683	209	2.1	208	87	2	605	33	13	24	28	1.93
29462--29772	79	3.9	79	85	5	423	32	13	25	28	1.93
29463--29772	157	2.0	158	89	3	473	32	13	24	28	1.93
34411--34486	21	3.7	21	80	3	100	28	17	11	42	1.84
34432--34504	20	3.6	20	81	3	101	31	19	13	35	1.91
34411--34504	41	2.3	41	98	0	179	29	18	12	39	1.88
37801--37964	31	5.9	31	71	23	157	32	7	23	36	1.84
37832--37933	22	4.2	23	74	21	91	32	5	24	37	1.80
37799--37962	53	3.1	53	98	0	310	31	7	23	37	1.83
37938--37982	23	2.0	23	87	8	67	35	4	17	42	1.70
38516--38580	20	3.6	20	73	26	81	29	15	15	40	1.88
38536--38593	13	4.9	13	70	23	56	32	15	15	36	1.89
38515--38594	33	2.4	33	100	0	160	31	15	15	38	1.88
38578--38633	19	2.9	20	78	7	71	32	16	16	35	1.90
38663--38729	20	3.7	20	70	25	76	31	17	16	34	1.93
38680--38709	13	2.3	13	94	0	51	36	16	10	36	1.82
38666--38730	33	2.0	33	100	0	130	32	18	15	33	1.92
41556--41583	12	2.3	12	100	0	56	32	0	46	21	1.52
41941--42005	33	2.0	33	90	0	103	36	16	15	30	1.90
41961--41985	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46087--46117	15	2.1	15	93	0	53	61	3	0	35	1.12
46195--46249	26	2.1	26	86	0	74	60	0	0	40	0.97
50373--50399	3	9.0	3	100	0	54	66	0	0	33	0.92
52679--52733	26	2.1	26	86	0	74	41	16	9	32	1.80
55082--55369	152	1.9	149	87	4	418	31	11	6	50	1.63
58569--58608	8	5.0	8	82	11	55	2	12	0	85	0.71
58587--58623	10	3.7	10	88	0	56	0	21	0	78	0.75
58572--58622	20	2.5	20	87	6	66	1	15	0	82	0.76
65357--65411	27	2.0	27	92	0	92	49	0	20	30	1.49
65701--65746	15	2.9	15	81	12	56	30	10	21	36	1.88
65701--65744	17	2.8	16	86	6	54	31	11	22	34	1.90

Tables:   1

The End!