Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold885
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 107980
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Found at i:3762 original size:21 final size:21
Alignment explanation
Indices: 3738--3777 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3728 AAAGGTATCT
3738 TTGGATAAAATG-ATGCATTGG
1 TTGGATAAAA-GAATGCATTGG
*
3759 TTGGATGAAAGAATGCATT
1 TTGGATAAAAGAATGCATT
3778 TTTTTTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (21 bp):
TTGGATAAAAGAATGCATTGG
Found at i:4255 original size:42 final size:42
Alignment explanation
Indices: 4199--4282 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
4189 GGCCTTCTGA
*
4199 TATTAAGCATATTTTAACTAAGGATGAAGCATGTCAGTGTAT
1 TATTAAGCATATTTTAACTAAGGATGAAGCATGCCAGTGTAT
4241 TATTAAGCATATTTTAACTAAGGATGAAGCATGCCAGTGTAT
1 TATTAAGCATATTTTAACTAAGGATGAAGCATGCCAGTGTAT
4283 AAAGTAGATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (42 bp):
TATTAAGCATATTTTAACTAAGGATGAAGCATGCCAGTGTAT
Found at i:4935 original size:13 final size:14
Alignment explanation
Indices: 4917--4952 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
4907 AATTACGAAC
*
4917 TAAATTAAA-AGTT
1 TAAATTAAACAATT
4930 TAAATTAAACAATT
1 TAAATTAAACAATT
4944 TAAATTAAA
1 TAAATTAAA
4953 TATTTTATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (14 bp):
TAAATTAAACAATT
Found at i:4959 original size:14 final size:13
Alignment explanation
Indices: 4917--4957 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
4907 AATTACGAAC
*
4917 TAAATTAAAAGTT
1 TAAATTAAAAATT
4930 TAAATTAAACAATT
1 TAAATTAAA-AATT
*
4944 TAAATTAAATATT
1 TAAATTAAAAATT
4957 T
1 T
4958 TATACCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (13 bp):
TAAATTAAAAATT
Found at i:5213 original size:19 final size:20
Alignment explanation
Indices: 5186--5223 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
5176 ATATTATAAT
5186 AATATAAAATTAAGAATATA
1 AATATAAAATTAAGAATATA
*
5206 AATA-AAAATTAATAATAT
1 AATATAAAATTAAGAATAT
5224 TATAATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (20 bp):
AATATAAAATTAAGAATATA
Found at i:5233 original size:19 final size:19
Alignment explanation
Indices: 5161--5247 Score: 68
Period size: 20 Copynumber: 4.3 Consensus size: 19
5151 AGTAATATAG
* *
5161 ATAAAAAAAATATTAATATT
1 ATAAATAAAA-ATTAATAAT
*
5181 ATAATAATATAAAATTAAGAAT
1 AT-A-AATA-AAAATTAATAAT
5203 ATAAATAAAAATTAATAAT
1 ATAAATAAAAATTAATAAT
* *
5222 ATTATAAT-AAATTTAATAAA
1 A-TA-AATAAAAATTAATAAT
5242 ATAAAT
1 ATAAAT
5248 TTAACAAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
18 3 0.05
19 14 0.25
20 19 0.34
21 5 0.09
22 12 0.21
23 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (19 bp):
ATAAATAAAAATTAATAAT
Found at i:5246 original size:14 final size:14
Alignment explanation
Indices: 5227--5257 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
5217 ATAATATTAT
*
5227 AATAAATTTAATAA
1 AATAAATTTAACAA
5241 AATAAATTTAACAA
1 AATAAATTTAACAA
5255 AAT
1 AAT
5258 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (14 bp):
AATAAATTTAACAA
Found at i:5784 original size:16 final size:17
Alignment explanation
Indices: 5762--5796 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5752 AAGAAAATTT
5762 TTAAAAATTTAAAA-AAA
1 TTAAAAA-TTAAAATAAA
5779 TTAAAAATTAAAATAAA
1 TTAAAAATTAAAATAAA
5796 T
1 T
5797 AATATAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TTAAAAATTAAAATAAA
Found at i:6025 original size:13 final size:13
Alignment explanation
Indices: 6009--6053 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
5999 TAAATTTATG
6009 TTTAATATTTTAA
1 TTTAATATTTTAA
6022 TTTAAT-TTTTAA
1 TTTAATATTTTAA
*
6034 TTTTAATATTTTTA
1 -TTTAATATTTTAA
6048 TTTAAT
1 TTTAAT
6054 TTAAAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 6 0.21
13 18 0.62
14 5 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAATATTTTAA
Found at i:7470 original size:17 final size:19
Alignment explanation
Indices: 7436--7472 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
7426 ACTTATTAAA
7436 ATATTTATATACAATATTT
1 ATATTTATATACAATATTT
7455 ATATTTA-ATA-AATATTT
1 ATATTTATATACAATATTT
7472 A
1 A
7473 AATATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 3 0.17
19 7 0.39
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (19 bp):
ATATTTATATACAATATTT
Found at i:7491 original size:14 final size:13
Alignment explanation
Indices: 7472--7505 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
7462 ATAAATATTT
7472 AAATATATTTATAA
1 AAATATATTT-TAA
7486 AAATATATTTTAA
1 AAATATATTTTAA
*
7499 ATATATA
1 AAATATA
7506 CAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAATATATTTTAA
Found at i:8340 original size:20 final size:19
Alignment explanation
Indices: 8287--8330 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
8277 ATAGTAATTT
8287 ATAA-TTAA-AATTTTAAA
1 ATAATTTAATAATTTTAAA
8304 A-AATTTAATAATTTTTAAA
1 ATAATTTAATAA-TTTTAAA
8323 ATAATTTA
1 ATAATTTA
8331 CCATATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.09
17 5 0.22
18 2 0.09
19 8 0.35
20 6 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATTTAATAATTTTAAA
Found at i:13688 original size:24 final size:25
Alignment explanation
Indices: 13661--13724 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 25
13651 TAGCCACAAA
* *
13661 TTTTGACAAACAACATG-CCACCAT
1 TTTTGACAAACAAAAAGACCACCAT
* *
13685 TTTTTACAAATAAAAAGAAACCACCAT
1 TTTTGACAAACAAAAAG--ACCACCAT
13712 TTTTGACAAACAA
1 TTTTGACAAACAA
13725 TGGGTAGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 13 0.42
27 18 0.58
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (25 bp):
TTTTGACAAACAAAAAGACCACCAT
Found at i:21770 original size:30 final size:28
Alignment explanation
Indices: 21734--21792 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
21724 ACAGAAATCC
* *
21734 TAAATTGACTAAAATTAAAATTGTATTAAT
1 TAAATTGA-TAAAACTAAAATT-AATTAAT
*
21764 TAAATTGATTAAACTAAAATTAATTAAT
1 TAAATTGATAAAACTAAAATTAATTAAT
21792 T
1 T
21793 TTTTAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 7 0.27
29 11 0.42
30 8 0.31
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (28 bp):
TAAATTGATAAAACTAAAATTAATTAAT
Found at i:22828 original size:19 final size:20
Alignment explanation
Indices: 22804--22843 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
22794 TTATTTTTAA
*
22804 ATTTTAAATTTTTTAT-TTT
1 ATTTTAAATTATTTATATTT
22823 ATTTTAAATTATTTATATTT
1 ATTTTAAATTATTTATATTT
22843 A
1 A
22844 AAAGAATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTTAAATTATTTATATTT
Found at i:23142 original size:86 final size:86
Alignment explanation
Indices: 23043--23229 Score: 293
Period size: 86 Copynumber: 2.2 Consensus size: 86
23033 ATGGACAAAA
** *
23043 TTATTTTGATTTTTTTAAATTTAATTTTTTATTTTTATTTTATTTGATCAAATCGAGAAAAAATT
1 TTATTTTGATTTTTTTAAATTTAATTTTTTATTTTTATTTTATTCAACCAAATCGAGAAAAAATT
23108 AAAAAAATTTATTTCATAATT
66 AAAAAAATTTATTTCATAATT
* * *
23129 TTATTTTGGTTTTTTTAGATTTAATTTTTTATTTTTATTTTATTCAACCAACTCGAGAAAAAATT
1 TTATTTTGATTTTTTTAAATTTAATTTTTTATTTTTATTTTATTCAACCAAATCGAGAAAAAATT
23194 AAAAAAATTTATTTCATAATT
66 AAAAAAATTTATTTCATAATT
* **
23215 TGATTTCAATTTTTT
1 TTATTTTGATTTTTT
23230 ATGATATTAA
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (86 bp):
TTATTTTGATTTTTTTAAATTTAATTTTTTATTTTTATTTTATTCAACCAAATCGAGAAAAAATT
AAAAAAATTTATTTCATAATT
Found at i:26481 original size:3 final size:3
Alignment explanation
Indices: 26473--26503 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
26463 AAATGAGTGC
26473 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26504 ATACTGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:27633 original size:27 final size:28
Alignment explanation
Indices: 27603--27656 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
27593 ATTTTTGATA
*
27603 AATATAAAATATGTAATAT-ATAAATAT
1 AATATAAAAAATGTAATATAATAAATAT
* *
27630 AATATAAAAAATTTTATATAATAAATA
1 AATATAAAAAATGTAATATAATAAATA
27657 ATTATCGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (28 bp):
AATATAAAAAATGTAATATAATAAATAT
Found at i:28883 original size:13 final size:15
Alignment explanation
Indices: 28865--28896 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
28855 AATTCACAAA
28865 TTATAAAT-TA-AAT
1 TTATAAATATATAAT
28878 TTATAAATATATAAT
1 TTATAAATATATAAT
28893 TTAT
1 TTAT
28897 GTTGAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 2 0.12
15 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATAAATATATAAT
Found at i:29743 original size:27 final size:25
Alignment explanation
Indices: 29702--29765 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 25
29692 ACTTAAAAAA
29702 TAAATATTTTATTTTATTAATTAT-TTT
1 TAAAT-TTTTATTTT-TT-ATTATATTT
*
29729 TAAATTTTTACTTTTTTATTGTATTT
1 TAAATTTTTA-TTTTTTATTATATTT
*
29755 TAAATTATTAT
1 TAAATTTTTAT
29766 GTATTTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 5 0.15
26 19 0.58
27 9 0.27
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (25 bp):
TAAATTTTTATTTTTTATTATATTT
Found at i:30160 original size:194 final size:195
Alignment explanation
Indices: 29844--30204 Score: 514
Period size: 195 Copynumber: 1.9 Consensus size: 195
29834 GAAAAATATT
* * *
29844 TTTTATTAATTATTTTTAATGTTTTAAATTTTTATTTTTATTTTATTTTTGAATAATATATTTAA
1 TTTTATTAATTATTTTTAATGTTTTAAATTTATATTTTTATTTTATTTTTAAATAATATATCTAA
* * * * **
29909 AGAAGTCACTCCTTTAAATATATCGTTTATTAATTATTTTTAGTTAAAGGTCAAAAAAATTA-TT
66 AGAAGTCACTCCTTTAAATACATCATTTAATAATTATTTTAAGTTAAAGACCAAAAAAATTATTT
* *
29973 TT-GTTCTTTTTAGATTTAATTTTTTATTTTTATTTTACTCTACCAACTCGAGAAAAAATAAAAA
131 TTGGTT-TTTTTAGATTTAATTTTTTATATTAATTTTACTCTACCAACTCGAGAAAAAATAAAAA
30037 A
195 A
* * * *
30038 TTTTATTATTTATTTTTAATTTTTTTAAATTTATGTTTTTATTTTATTTTTAAATGATATATCTA
1 TTTTATTAATTATTTTTAA-TGTTTTAAATTTATATTTTTATTTTATTTTTAAATAATATATCTA
* *
30103 AAGAAGT-ACTCTTTTAAATACA-CTATTTAATAATTATTTTAAGTTAATGACCAAAAAAATTAT
65 AAGAAGTCACTCCTTTAAATACATC-ATTTAATAATTATTTTAAGTTAAAGACCAAAAAAATTAT
30166 TTTTGGTTTTTTTAGATTTAATTTTTTATATTAATTTTA
129 TTTTGGTTTTTTTAGATTTAATTTTTTATATTAATTTTA
30205 TTTATAAATT
Statistics
Matches: 146, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
193 1 0.01
194 63 0.43
195 79 0.54
196 3 0.02
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (195 bp):
TTTTATTAATTATTTTTAATGTTTTAAATTTATATTTTTATTTTATTTTTAAATAATATATCTAA
AGAAGTCACTCCTTTAAATACATCATTTAATAATTATTTTAAGTTAAAGACCAAAAAAATTATTT
TTGGTTTTTTTAGATTTAATTTTTTATATTAATTTTACTCTACCAACTCGAGAAAAAATAAAAAA
Found at i:36412 original size:39 final size:39
Alignment explanation
Indices: 36369--36459 Score: 92
Period size: 39 Copynumber: 2.3 Consensus size: 39
36359 ATGTAGTTGG
** ***
36369 CATAGCCACCCAACTATTTATTTATTTTTCATGGATTAA
1 CATAGCCACCCAACTACATATTTAAAATTCATGGATTAA
* * * *
36408 CATAGCTACTCAACTACATATTTAAAATTCGTGGATTAG
1 CATAGCCACCCAACTACATATTTAAAATTCATGGATTAA
*
36447 TATAGCCACCCAA
1 CATAGCCACCCAA
36460 ATTCTAACAA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (39 bp):
CATAGCCACCCAACTACATATTTAAAATTCATGGATTAA
Found at i:41403 original size:2 final size:2
Alignment explanation
Indices: 41398--41424 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
41388 TAAAAAAGCA
41398 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
41425 AACTTTTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:42173 original size:27 final size:27
Alignment explanation
Indices: 42142--42196 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
42132 GACAACAACC
42142 GTTATTTAAATTCCAGCTAATGTGCTG
1 GTTATTTAAATTCCAGCTAATGTGCTG
42169 GTTATTTAAATTCCAGCTAATGTGCTG
1 GTTATTTAAATTCCAGCTAATGTGCTG
42196 G
1 G
42197 ATGGGATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (27 bp):
GTTATTTAAATTCCAGCTAATGTGCTG
Found at i:44586 original size:15 final size:17
Alignment explanation
Indices: 44549--44587 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
44539 AATTTTTTTT
44549 ATTT-ATTTAAGTTTGA
1 ATTTAATTTAAGTTTGA
44565 A-TTAATTTAA-TTT-A
1 ATTTAATTTAAGTTTGA
44579 ATTTAATTT
1 ATTTAATTT
44588 TTTTTTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 12 0.57
16 7 0.33
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (17 bp):
ATTTAATTTAAGTTTGA
Found at i:45323 original size:22 final size:20
Alignment explanation
Indices: 45275--45333 Score: 52
Period size: 22 Copynumber: 2.9 Consensus size: 20
45265 TTAATACATA
45275 ATTTTTTTTATT--TTTTAT
1 ATTTTTTTTATTCCTTTTAT
*
45293 TTTTCTTTTTATTCCTTTCGTAT
1 ATTT-TTTTTATTCCTTT--TAT
45316 ATTTTTTTCT-TTCCTTTT
1 ATTTTTTT-TATTCCTTTT
45334 CCTTTTCCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
18 3 0.09
19 8 0.24
20 1 0.03
21 3 0.09
22 11 0.33
23 7 0.21
ACGTcount: A:0.10, C:0.12, G:0.02, T:0.76
Consensus pattern (20 bp):
ATTTTTTTTATTCCTTTTAT
Found at i:55222 original size:18 final size:18
Alignment explanation
Indices: 55199--55249 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
55189 TGATTCTTTA
*
55199 AAAAAAAATTGAGAAATG
1 AAAAAAAATTGAGAAAAG
*
55217 AAAAAAAA-TAAGAAAAG
1 AAAAAAAATTGAGAAAAG
*
55234 AAAAAATATTGA-AAAA
1 AAAAAAAATTGAGAAAA
55250 AAAGTGAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 18 0.64
18 10 0.36
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.14
Consensus pattern (18 bp):
AAAAAAAATTGAGAAAAG
Found at i:57408 original size:2 final size:2
Alignment explanation
Indices: 57403--57442 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
57393 TTACATATTC
57403 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57443 CAACCCCACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58229 original size:12 final size:14
Alignment explanation
Indices: 58219--58251 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
58209 TTGATAATTT
58219 TAAATATAATTATA
1 TAAATATAATTATA
58233 TAAATATAA-TATA
1 TAAATATAATTATA
58246 -AAATAT
1 TAAATAT
58252 TTAATATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 4 0.21
14 9 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAATATAATTATA
Found at i:61365 original size:2 final size:2
Alignment explanation
Indices: 61358--61386 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
61348 AAATTAGGTG
61358 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
61387 GAGAATTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:62132 original size:13 final size:13
Alignment explanation
Indices: 62114--62156 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
62104 ATATATATAT
62114 AATAAAAATTTAA
1 AATAAAAATTTAA
62127 AAT--AAATTTAAA
1 AATAAAAATTT-AA
*
62139 AATAAAAATTTGA
1 AATAAAAATTTAA
62152 AATAA
1 AATAA
62157 TTTAAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 6 0.23
12 5 0.19
13 9 0.35
14 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (13 bp):
AATAAAAATTTAA
Found at i:62142 original size:25 final size:24
Alignment explanation
Indices: 62114--62162 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
62104 ATATATATAT
62114 AATAAAAATTTAAAATAAATTTAAA
1 AATAAAAATTTAAAAT-AATTTAAA
*
62139 AATAAAAATTTGAAATAATTTAAA
1 AATAAAAATTTAAAATAATTTAAA
62163 TTAAAGGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AATAAAAATTTAAAATAATTTAAA
Found at i:63008 original size:23 final size:23
Alignment explanation
Indices: 62982--63029 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
62972 TTAATTGGAC
* *
62982 TTTTAATTTAGGTTTAGATGAAT
1 TTTTAATTTAGATTTAAATGAAT
* *
63005 TTTTAGTTTAGATTTAAATGGAT
1 TTTTAATTTAGATTTAAATGAAT
63028 TT
1 TT
63030 AAGTTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (23 bp):
TTTTAATTTAGATTTAAATGAAT
Found at i:66813 original size:66 final size:66
Alignment explanation
Indices: 66707--66830 Score: 194
Period size: 66 Copynumber: 1.9 Consensus size: 66
66697 CTGGCTCCTA
* * *
66707 TTCGTAGTACATGGTTTATTCTCTCCATCTTCTTCTTTAAGAGAGTCACCTGCCTTGCTACACTT
1 TTCGTAGTACACGGTTTATCCTCTCCATCGTCTTCTTTAAGAGAGTCACCTGCCTTGCTACACTT
66772 G
66 G
* * *
66773 TTCGTATTACACGGTTTATCCTCTCCATCGTCTTCTTTAAGGGATTCACCTGCCTTGC
1 TTCGTAGTACACGGTTTATCCTCTCCATCGTCTTCTTTAAGAGAGTCACCTGCCTTGC
66831 CCTTACCACA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.17, C:0.27, G:0.15, T:0.40
Consensus pattern (66 bp):
TTCGTAGTACACGGTTTATCCTCTCCATCGTCTTCTTTAAGAGAGTCACCTGCCTTGCTACACTT
G
Found at i:68114 original size:3 final size:3
Alignment explanation
Indices: 68106--68153 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
68096 CTCCTTTCCC
*
68106 AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
68154 GACTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:69402 original size:2 final size:2
Alignment explanation
Indices: 69395--69425 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
69385 ACATACATAC
69395 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69426 ACCAGCTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71155 original size:6 final size:6
Alignment explanation
Indices: 71140--71228 Score: 85
Period size: 6 Copynumber: 14.7 Consensus size: 6
71130 TAAGCTATTT
* * *
71140 TATATC TATATG TATATC TATAT- TTTAAC TATA-- TATATC TTGATGTATC
1 TATATC TATATC TATATC TATATC TATATC TATATC TATATC -T-A--TATC
*
71189 TATATC TATATC TATATC TATATC TATATC TATATA TATA
1 TATATC TATATC TATATC TATATC TATATC TATATC TATA
71229 GATATATTAT
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
4 4 0.06
5 3 0.04
6 55 0.79
7 1 0.01
8 2 0.03
9 1 0.01
10 4 0.06
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.51
Consensus pattern (6 bp):
TATATC
Found at i:71234 original size:18 final size:18
Alignment explanation
Indices: 71195--71235 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
71185 TATCTATATC
* **
71195 TATATCTATATCTATATC
1 TATATCTATATATATAGA
71213 TATATCTATATATATAGA
1 TATATCTATATATATAGA
71231 TATAT
1 TATAT
71236 TATCTATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (18 bp):
TATATCTATATATATAGA
Found at i:74546 original size:2 final size:2
Alignment explanation
Indices: 74539--74605 Score: 61
Period size: 2 Copynumber: 34.5 Consensus size: 2
74529 AACATTGTTA
*
74539 AT AT AT AT AT AT AT AT AT AT AT A- AT -T AT -T CT -T AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
* *
74578 GAA AT AT AT AT AT AT AT AT AC AT AT AT A
1 -AT AT AT AT AT AT AT AT AT AT AT AT AT A
74606 CACACACAAG
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
1 4 0.07
2 48 0.87
3 3 0.05
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:75477 original size:12 final size:11
Alignment explanation
Indices: 75456--75511 Score: 51
Period size: 12 Copynumber: 5.0 Consensus size: 11
75446 TATACGTATC
*
75456 TATATCTATAT
1 TATATTTATAT
75467 TAATATTTATAT
1 T-ATATTTATAT
*
75479 TTTATTTATAT
1 TATATTTATAT
* *
75490 CTAGATTTAT-C
1 -TATATTTATAT
75501 TATATTTATAT
1 TATATTTATAT
75512 GTATGCATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
10 8 0.23
11 10 0.29
12 17 0.49
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (11 bp):
TATATTTATAT
Found at i:76716 original size:21 final size:22
Alignment explanation
Indices: 76682--76724 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
76672 TATCAATTTA
76682 TTTAAAAATAAATTTAAATATT
1 TTTAAAAATAAATTTAAATATT
*
76704 TTTAAAAAT-AATTTTAATATT
1 TTTAAAAATAAATTTAAATATT
76725 AAATAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTTAAAAATAAATTTAAATATT
Found at i:76731 original size:22 final size:22
Alignment explanation
Indices: 76684--76731 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
76674 TCAATTTATT
**
76684 TAAAAATAAATTTAAATATTTT
1 TAAAAATAAATTTAAATATTAA
*
76706 TAAAAAT-AATTTTAATATTAAA
1 TAAAAATAAATTTAAATATT-AA
76728 TAAA
1 TAAA
76732 TATTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAAAATAAATTTAAATATTAA
Found at i:78628 original size:10 final size:10
Alignment explanation
Indices: 78615--78650 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
78605 AATAATAATC
78615 TTTTCTTTTT
1 TTTTCTTTTT
78625 TTTTCTTTTT
1 TTTTCTTTTT
78635 TTTTCACTTTTT
1 TTTT--CTTTTT
78647 TTTT
1 TTTT
78651 TACCATGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
12 10 0.42
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:78637 original size:12 final size:12
Alignment explanation
Indices: 78620--78653 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
78610 TAATCTTTTC
78620 TTTTTTTTT-CT
1 TTTTTTTTTACT
*
78631 TTTTTTTTCACT
1 TTTTTTTTTACT
78643 TTTTTTTTTAC
1 TTTTTTTTTAC
78654 CATGCACATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTTTTTTACT
Found at i:80280 original size:30 final size:28
Alignment explanation
Indices: 80244--80308 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 28
80234 GGCGAAATGA
80244 TATAAAAATTTAAATTAAATTAAAAAAATT
1 TATAAAAATTTAAATTAAATT--AAAAATT
* *
80274 TATAAAAATTTAGATTAGATTAAAAATT
1 TATAAAAATTTAAATTAAATTAAAAATT
80302 TATAAAA
1 TATAAAA
80309 TAAAGGATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 14 0.42
30 19 0.58
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (28 bp):
TATAAAAATTTAAATTAAATTAAAAATT
Found at i:80546 original size:17 final size:18
Alignment explanation
Indices: 80520--80553 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80510 ATAATAATTT
*
80520 TAAAATATTA-AAATAAC
1 TAAAAAATTATAAATAAC
80537 TAAAAAATTATAAATAA
1 TAAAAAATTATAAATAA
80554 ATATGTGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAAATTATAAATAAC
Found at i:80821 original size:20 final size:21
Alignment explanation
Indices: 80798--80851 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
80788 AATTTCAGGC
80798 ATGTATCGATACATTCACT-T
1 ATGTATCGATACATTCACTAT
*
80818 ATGTATCGATACATTTACTAT
1 ATGTATCGATACATTCACTAT
* *
80839 TTATATCGATACA
1 ATGTATCGATACA
80852 AATTATAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATTCACTAT
Found at i:81594 original size:17 final size:17
Alignment explanation
Indices: 81574--81616 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
81564 TTTTTATTAT
81574 TCTCATCATTTTAGTGA
1 TCTCATCATTTTAGTGA
81591 TCTCATCATTTTAGTGA
1 TCTCATCATTTTAGTGA
*
81608 TCCCATCAT
1 TCTCATCAT
81617 GTTTCATGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (17 bp):
TCTCATCATTTTAGTGA
Found at i:83392 original size:97 final size:96
Alignment explanation
Indices: 83261--83454 Score: 255
Period size: 97 Copynumber: 2.0 Consensus size: 96
83251 ATACTTCAAT
** * *
83261 CCCGTTTTTAAACTCGTTGAGATTCAAATCTTATTTTTGCTTAAATTGTCATCATCGAGGATACT
1 CCCGTTTTTAAACTCGTCAAGATTCAAATATTATTTTTACTTAAATTGTCATCATCGAGGATACT
* * *
83326 CCAATCTCATTCTTCCGAGAGTACACTCCAAC
66 CCAATC-CATTCCTCCGAAAGGACACTCCAAC
* * * *
83358 CCCGTTTTTAAACTTGTCAAGACTT-AAATATTATTTTTACTTAAGTTGTCATCGTCGGGGATAC
1 CCCGTTTTTAAACTCGTCAAGA-TTCAAATATTATTTTTACTTAAATTGTCATCATCGAGGATAC
*
83422 TCCAATCCATTCCTCCGAAAGGATACTCCAAC
65 TCCAATCCATTCCTCCGAAAGGACACTCCAAC
83454 C
1 C
83455 TCATTTTTCA
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
96 22 0.26
97 60 0.71
98 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (96 bp):
CCCGTTTTTAAACTCGTCAAGATTCAAATATTATTTTTACTTAAATTGTCATCATCGAGGATACT
CCAATCCATTCCTCCGAAAGGACACTCCAAC
Found at i:83602 original size:21 final size:21
Alignment explanation
Indices: 83577--83616 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
83567 AGTTATCCCT
83577 AGATA-ATCAGTGACAATTACG
1 AGATACATCA-TGACAATTACG
*
83598 AGATACATCATGACTATTA
1 AGATACATCATGACAATTA
83617 TACTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (21 bp):
AGATACATCATGACAATTACG
Found at i:87934 original size:17 final size:17
Alignment explanation
Indices: 87914--87949 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
87904 AAGGAAGATG
* *
87914 AAGAAGAAAGAAAGAAA
1 AAGAAAAAAAAAAGAAA
87931 AAGAAAAAAAAAAGAAA
1 AAGAAAAAAAAAAGAAA
87948 AA
1 AA
87950 ATATGAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAAAGAAA
Found at i:88334 original size:2 final size:2
Alignment explanation
Indices: 88321--88353 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
88311 TTATTTTATT
*
88321 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
88354 TTTGAAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:88520 original size:23 final size:25
Alignment explanation
Indices: 88493--88544 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
88483 AGAAAAGTTC
* *
88493 AAAATTTATGTTT-TTT-TTTTAAA
1 AAAATTGATCTTTATTTGTTTTAAA
88516 AAAA-TGATCTTTATTTGTTTTAAA
1 AAAATTGATCTTTATTTGTTTTAAA
88540 AAAAT
1 AAAAT
88545 AAAAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
22 6 0.25
23 7 0.29
24 11 0.46
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (25 bp):
AAAATTGATCTTTATTTGTTTTAAA
Found at i:93952 original size:20 final size:20
Alignment explanation
Indices: 93927--93977 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
93917 AATTAGATGC
*
93927 ATCAATACATTGAAAAATGT
1 ATCAATACATCGAAAAATGT
93947 ATCAATACATCGAAAAATGT
1 ATCAATACATCGAAAAATGT
93967 ATCAATACATC
1 ATCAATACATC
93978 TGGGTAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.08, T:0.27
Consensus pattern (20 bp):
ATCAATACATCGAAAAATGT
Found at i:104776 original size:21 final size:22
Alignment explanation
Indices: 104752--104793 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
104742 TATAAACTTT
*
104752 ATTTTTTATTTT-CTTTTTTAA
1 ATTTTATATTTTCCTTTTTTAA
104773 ATTTTATATTTTCCTTTTTTA
1 ATTTTATATTTTCCTTTTTTA
104794 TAAATAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (22 bp):
ATTTTATATTTTCCTTTTTTAA
Found at i:105083 original size:18 final size:18
Alignment explanation
Indices: 105060--105099 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
105050 TAATTTTTTA
*
105060 TTTCTTCTTTATTATATT
1 TTTCTTCTTTATCATATT
* *
105078 TTTCTTTTTTATCATCTT
1 TTTCTTCTTTATCATATT
105096 TTTC
1 TTTC
105100 AATTAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTCTTCTTTATCATATT
Found at i:106521 original size:483 final size:491
Alignment explanation
Indices: 105671--106754 Score: 1497
Period size: 506 Copynumber: 2.2 Consensus size: 491
105661 TCACTTTTTC
* * *
105671 TAAAGTTATTATAAACAACTATAAAATGTAAAATATTTATTTACATTAATTTTCTAATTTTTAAT
1 TAAA-TTATTATAAATAACTATAAAATGTAAAATATTTATTTACATTAATTTTATAATTTTTTAT
* * *
105736 TTCTTCTTTATTATATTTTTTTTTTATCATCTTTTCAATTAAATTTTAGAATATATTTTCTATTG
65 TTCTTCTTTATTATA----TTTTTAATCATCTTTTCAATTAAATTTTAAAATATATTTTATATTG
* * * * * *
105801 ATCTTTAAATTTTAAAACGTATCAATTAGGTTTTTCATCTTAACGTTTCGTATCAATGAAGTCCT
126 ATCTTTAAATTTTAAAACATATCAATTAAGTTTTTAATCTTAACATTTCATATCAATCAAGT-CT
* * * ** *
105866 TTTATTAGTAAAAACGTTAAAATAGACATTAAATTACACGTGGTAACAATATAATAGTGATGCTA
190 CTTATTAGTAAAAACATTAAAATAAACATTAAAGGACACGTGGCAACAATATAATAGTGATGCTA
*
105931 TTAACTCTATTCTTTTATTTTTTTTTCAAATTTTATATTTTCTTTTCTTATAAATAAATACAAAA
255 TTAACTCTATTCTTTTATTTTTTTTTCAAATTTCATA---T-TTTTCTTATAAATAAATACAAAA
*
105996 AATTTAAAAATTATATTATAATTTGGATTAATTTGTG-AA-AA-TAT-A-AT-TA-ATTTAAAAT
316 AATTTAAAAATTATATTATAATTTGAATTAATTTGTGAAATAATTATAACATATATATTTAAAAT
* *
106054 TAATTTTATAAAAACTATTTTTAATATTTTTCTATCCTTTGTTTCTTTTTTTTCCCATTTTATCA
381 TAATTTTATAAAAACTATTTTTAATATTTTTCTATCCTTTGTTTCCTTCTTTTCCCATTTTATCA
106119 TCTTTATAAATTAACTAAGACATAAATAATAATTTATATTATAATT
446 TCTTTATAAATTAACTAAGACATAAATAATAATTTATATTATAATT
*
106165 TAAATTATTATTAAATAACTATAAAATGTAAAATATTTATTTACATTAATTTTTTAATTTTTTAT
1 TAAATTATTA-TAAATAACTATAAAATGTAAAATATTTATTTACATTAATTTTATAATTTTTTAT
106230 TTCTTCTTTATTATATTTTTAATCATCTTTTTCAATTAAATTTTAAAATATATTTTATATTGATC
65 TTCTTCTTTATTATATTTTTAATCATC-TTTTCAATTAAATTTTAAAATATATTTTATATTGATC
* *
106295 TTTAAATTTTAAAACATATCAATTAAGTTTTTAATCTTAATATTTCATATTAATCAAGT-TCTTA
129 TTTAAATTTTAAAACATATCAATTAAGTTTTTAATCTTAACATTTCATATCAATCAAGTCTCTTA
* * * *** *
106359 -TGGTAAAAACATTAAACTAAATATTAAAGGACACGTGGCAATGGTATAATAGTGATTCTATTAA
194 TTAGTAAAAACATTAAAATAAACATTAAAGGACACGTGGCAACAATATAATAGTGATGCTATTAA
*
106423 CTCTATTCTTTTATTTTCTTTTTCAAATTTCATA-TTTT-TTATAAATAAATACAAAAAATTTGA
259 CTCTATTCTTTTATTTT-TTTTTCAAATTTCATATTTTTCTTATAAATAAATACAAAAAATTTAA
106486 AAATTATATTATAATTTGAATTAATTTGTGAAAATATAATTAATTTATAAACATACAAAATATTT
323 AAATTATATTATAATTTGAATTAATTTGTG-----A-AA-TAA-TTAT-AACAT-----ATA--T
* *
106551 ATTTAAAATTAATTTTATAAAAACTTTTTTTAATATTTTTCTATCCTTTGTTTCCTTCTTTTCCT
372 ATTTAAAATTAATTTTATAAAAACTATTTTTAATATTTTTCTATCCTTTGTTTCCTTCTTTTCCC
106616 ATTTTATCATCTTTATAAATTAACTAAGACATAAATAATAATTTATATTATAATT
437 ATTTTATCATCTTTATAAATTAACTAAGACATAAATAATAATTTATATTATAATT
*
106671 TAAATTATTATAAATAACTATAAAATGTAAAATATTTATTTACATTAATTTTATAATTATTTATT
1 TAAATTATTATAAATAACTATAAAATGTAAAATATTTATTTACATTAATTTTATAATTTTTTATT
*
106736 TATTCTTTATTATATTTTT
66 TCTTCTTTATTATATTTTT
106755 CTTTTTTATC
Statistics
Matches: 527, Mismatches: 37, Indels: 41
0.87 0.06 0.07
Matches are distributed among these distances:
483 53 0.10
484 4 0.01
488 69 0.13
489 19 0.04
490 13 0.02
491 86 0.16
492 2 0.00
493 6 0.01
494 73 0.14
496 1 0.00
497 2 0.00
503 2 0.00
505 71 0.13
506 126 0.24
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.49
Consensus pattern (491 bp):
TAAATTATTATAAATAACTATAAAATGTAAAATATTTATTTACATTAATTTTATAATTTTTTATT
TCTTCTTTATTATATTTTTAATCATCTTTTCAATTAAATTTTAAAATATATTTTATATTGATCTT
TAAATTTTAAAACATATCAATTAAGTTTTTAATCTTAACATTTCATATCAATCAAGTCTCTTATT
AGTAAAAACATTAAAATAAACATTAAAGGACACGTGGCAACAATATAATAGTGATGCTATTAACT
CTATTCTTTTATTTTTTTTTCAAATTTCATATTTTTCTTATAAATAAATACAAAAAATTTAAAAA
TTATATTATAATTTGAATTAATTTGTGAAATAATTATAACATATATATTTAAAATTAATTTTATA
AAAACTATTTTTAATATTTTTCTATCCTTTGTTTCCTTCTTTTCCCATTTTATCATCTTTATAAA
TTAACTAAGACATAAATAATAATTTATATTATAATT
Done.