genome.fa.s889.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold889
Parameters: 2 7 7 80 10 50 1000
Length:  68758

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039--1205	51	3.3	51	80	0	145	36	10	22	29	1.88
1189--1260	27	2.6	28	86	2	92	25	20	30	23	1.99
1247--1368	51	2.4	51	86	5	156	33	11	22	31	1.90
925--1368	210	2.1	210	85	3	590	33	12	25	28	1.93
2874--2975	49	2.1	49	100	0	204	49	15	17	17	1.81
4625--4725	53	2.0	50	92	5	166	33	14	18	32	1.92
5978--6120	16	8.8	16	76	5	90	56	4	2	35	1.35
5980--6120	48	2.9	47	81	9	133	56	4	2	35	1.36
10837--10883	16	2.9	16	80	0	58	48	38	4	8	1.53
10874--10946	32	2.3	32	78	4	85	46	27	13	12	1.79
10971--11008	15	2.4	16	83	16	53	55	26	0	18	1.43
15223--15294	25	2.6	27	76	14	76	51	0	0	48	1.00
15261--15285	13	1.9	13	100	0	50	40	0	0	60	0.97
15406--15442	10	3.5	11	85	14	51	51	0	2	45	1.15
17220--17254	13	2.6	13	86	4	52	37	0	2	60	1.12
17943--18020	30	2.6	30	93	0	129	34	2	14	48	1.57
20811--20849	18	2.3	16	86	8	51	10	5	33	51	1.58
24552--24602	26	2.0	26	84	7	68	52	0	1	45	1.12
24921--25008	24	3.6	24	77	10	72	36	3	0	60	1.14
24948--25008	25	2.4	26	78	13	74	34	4	0	60	1.18
25273--25326	23	2.3	21	74	20	54	14	3	7	74	1.18
25279--25328	23	2.0	24	85	11	66	16	4	6	74	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25338--25557	117	1.9	116	83	0	287	30	10	7	51	1.63
25909--26023	47	2.5	44	78	12	124	40	7	17	33	1.78
26536--26578	19	2.3	19	80	8	52	58	0	4	37	1.19
26934--26986	19	2.7	21	70	24	60	39	1	0	58	1.09
26988--27034	11	4.4	11	82	12	53	34	0	2	63	1.06
26988--27030	16	2.5	17	85	11	61	32	0	2	65	1.06
26978--27030	6	9.0	6	78	19	51	33	0	1	64	1.05
26983--27034	16	3.1	16	76	18	52	34	0	1	63	1.06
27877--27986	30	3.7	29	78	8	107	35	5	8	50	1.55
28495--28639	20	6.7	20	75	16	119	33	15	11	40	1.83
39195--39249	8	6.9	8	81	6	67	83	9	3	3	0.88
39195--39249	23	2.3	24	84	3	76	83	9	3	3	0.88
40461--41132	28	23.4	28	85	4	844	29	31	17	21	1.96
41999--42052	20	2.7	20	85	0	72	37	12	11	38	1.79
45777--45904	22	5.8	22	76	3	114	34	7	14	42	1.75
45983--46053	20	3.4	21	78	9	83	18	11	30	39	1.86
45983--46053	21	3.4	20	83	11	81	18	11	30	39	1.86
45983--46058	22	3.6	21	81	13	86	19	10	28	40	1.85
46208--46281	22	3.6	21	78	5	71	16	6	31	45	1.73
46367--46417	20	2.5	21	76	20	54	17	11	25	45	1.83
47188--47265	22	3.5	22	82	3	77	39	11	11	37	1.78
47342--47416	21	3.6	21	72	13	57	29	10	24	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47528--47624	44	2.2	44	90	3	151	39	5	13	42	1.66
47529--47627	22	4.5	22	77	14	80	38	5	14	42	1.67
47753--47921	63	2.7	61	81	10	187	42	16	17	23	1.88
48467--48531	24	2.8	22	78	15	69	43	7	7	41	1.62
48474--48539	22	2.9	23	76	13	66	45	7	7	39	1.61
48560--48614	23	2.5	22	77	16	60	43	30	9	16	1.79
49556--49693	29	4.8	29	74	6	82	49	15	5	29	1.67
50012--50068	30	2.0	27	86	10	78	35	15	0	49	1.45
50660--50694	15	2.3	16	90	9	56	54	0	0	45	0.99
53380--53495	51	2.2	52	86	5	164	44	13	11	30	1.79
53553--53604	19	2.6	20	87	6	79	28	19	11	40	1.86
57214--57257	23	1.9	23	86	9	63	15	0	2	81	0.78
68635--68675	21	2.0	21	95	0	73	26	9	21	41	1.84

Tables:   1

The End!