Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold89
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5168001
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 33045 characters in sequence are not A, C, G, or T
File 27 of 27
Found at i:4871202 original size:20 final size:20
Alignment explanation
Indices: 4871174--4871248 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
4871164 TCATACCCTG
4871174 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
4871194 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
4871214 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
4871234 ATGTATCGATACATT
1 ATGTATCGATACATT
4871249 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:4871241 original size:40 final size:39
Alignment explanation
Indices: 4871174--4871251 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
4871164 TCATACCCTG
* *
4871174 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
4871214 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
4871252 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:4874989 original size:2 final size:2
Alignment explanation
Indices: 4874984--4875021 Score: 58
Period size: 2 Copynumber: 18.0 Consensus size: 2
4874974 CTCTCTCCAT
4874984 TA TA TA TA TA TA TA TA TA TA TA TA TA TCA CTA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A -TA TA TA TA
4875022 AAATGTCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 31 0.91
3 2 0.06
4 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4877539 original size:2 final size:2
Alignment explanation
Indices: 4877532--4877561 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4877522 TTTTGCAATA
4877532 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4877562 GTTAGATAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4878548 original size:2 final size:2
Alignment explanation
Indices: 4878541--4878571 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4878531 TTAACGAGGA
4878541 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4878572 GACATACAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4887531 original size:26 final size:26
Alignment explanation
Indices: 4887483--4887532 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
4887473 TTATTTGTAC
* **
4887483 TAATTTTGGAAAATATGTGTTTTCTT
1 TAATTTGGGAAAATATGCATTTTCTT
*
4887509 TAATTTGGGCAAATATGCATTTTC
1 TAATTTGGGAAAATATGCATTTTC
4887533 ATCTCTATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (26 bp):
TAATTTGGGAAAATATGCATTTTCTT
Found at i:4889928 original size:21 final size:22
Alignment explanation
Indices: 4889897--4889943 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
4889887 TTAAATTTGT
4889897 AATTTTAAAAATTAAAAATTTC
1 AATTTTAAAAATTAAAAATTTC
* *
4889919 AATTTT-AAAATTTAAATTTTC
1 AATTTTAAAAATTAAAAATTTC
4889940 AATT
1 AATT
4889944 GCAATGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTTTAAAAATTAAAAATTTC
Found at i:4890137 original size:30 final size:28
Alignment explanation
Indices: 4890092--4890175 Score: 87
Period size: 30 Copynumber: 2.9 Consensus size: 28
4890082 AACATATTCA
* *
4890092 ATTTTTTTTTTTTTGTATTTCCACCCGT
1 ATTTTATTTCTTTTGTATTTCCACCCGT
* *
4890120 ATTTTGAATTTCTTTTGTATTTCCGCCTGT
1 ATTTT--ATTTCTTTTGTATTTCCACCCGT
*
4890150 ATTTTATTTTTTTCTGTAGTTTCCAC
1 ATTTTATTTCTTT-TGTA-TTTCCAC
4890176 ATTGACGCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
28 12 0.26
29 4 0.09
30 30 0.65
ACGTcount: A:0.13, C:0.17, G:0.10, T:0.61
Consensus pattern (28 bp):
ATTTTATTTCTTTTGTATTTCCACCCGT
Found at i:4900658 original size:4 final size:4
Alignment explanation
Indices: 4900642--4900672 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
4900632 GTGTGGGCAT
*
4900642 TCCC TCAC TCCC TCCC TCCC TCCC TCCC TCC
1 TCCC TCCC TCCC TCCC TCCC TCCC TCCC TCC
4900673 AATCCTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.03, C:0.71, G:0.00, T:0.26
Consensus pattern (4 bp):
TCCC
Found at i:4905088 original size:20 final size:20
Alignment explanation
Indices: 4905063--4905111 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
4905053 AAAACTTAAG
4905063 AAATAATATATTTAAAATAA
1 AAATAATATATTTAAAATAA
* * **
4905083 AAATAACACATTTAATTTAA
1 AAATAATATATTTAAAATAA
4905103 AAATAATAT
1 AAATAATAT
4905112 GTTTCTTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATAATATATTTAAAATAA
Found at i:4906870 original size:2 final size:2
Alignment explanation
Indices: 4906863--4906892 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4906853 TATCAAGCGT
4906863 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4906893 AGATTTATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4908744 original size:3 final size:3
Alignment explanation
Indices: 4908738--4908762 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4908728 GTAGTAGTAG
4908738 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
4908763 TGGCCAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:4911787 original size:6 final size:6
Alignment explanation
Indices: 4911776--4911819 Score: 52
Period size: 6 Copynumber: 6.7 Consensus size: 6
4911766 ATACAGCATA
4911776 TATATG TATATG TATATATG TATATG TATATATG TATATG TATA
1 TATATG TATATG --TATATG TATATG --TATATG TATATG TATA
4911820 ATGTTTATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 22 0.65
8 12 0.35
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:4911793 original size:8 final size:8
Alignment explanation
Indices: 4911774--4911814 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
4911764 GCATACAGCA
4911774 TATATATG
1 TATATATG
4911782 --TATATG
1 TATATATG
4911788 TATATATG
1 TATATATG
4911796 --TATATG
1 TATATATG
4911802 TATATATG
1 TATATATG
4911810 TATAT
1 TATAT
4911815 GTATAATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
6 12 0.41
8 17 0.59
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (8 bp):
TATATATG
Found at i:4911793 original size:14 final size:14
Alignment explanation
Indices: 4911774--4911823 Score: 93
Period size: 14 Copynumber: 3.6 Consensus size: 14
4911764 GCATACAGCA
4911774 TATATATGTATATG
1 TATATATGTATATG
4911788 TATATATGTATATG
1 TATATATGTATATG
4911802 TATATATGTATATG
1 TATATATGTATATG
4911816 TATA-ATGT
1 TATATATGT
4911824 TTATACTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 4 0.11
14 32 0.89
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
TATATATGTATATG
Found at i:4916693 original size:2 final size:2
Alignment explanation
Indices: 4916686--4916713 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4916676 AAAAGATGGG
4916686 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
4916714 CATCTAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:4917074 original size:16 final size:16
Alignment explanation
Indices: 4917050--4917081 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4917040 ATGAGATTGT
4917050 GAAGAAAAGAAAGAAA
1 GAAGAAAAGAAAGAAA
*
4917066 GAAGGAAAGAAAGAAA
1 GAAGAAAAGAAAGAAA
4917082 TAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
GAAGAAAAGAAAGAAA
Found at i:4928879 original size:18 final size:18
Alignment explanation
Indices: 4928856--4928899 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4928846 GTGCATACCC
*
4928856 TCCACCTCCTGGGGGATA
1 TCCACCTCCTGGAGGATA
*
4928874 TCCACCTGCTGGAGGATA
1 TCCACCTCCTGGAGGATA
*
4928892 TCCCCCTC
1 TCCACCTC
4928900 AAGGAGGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.16, C:0.39, G:0.23, T:0.23
Consensus pattern (18 bp):
TCCACCTCCTGGAGGATA
Found at i:4928910 original size:21 final size:21
Alignment explanation
Indices: 4928884--4928924 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
4928874 TCCACCTGCT
*
4928884 GGAGGATATCCCCCTCAAGGA
1 GGAGGATACCCCCCTCAAGGA
4928905 GGAGGATACCCCCCTCAAGG
1 GGAGGATACCCCCCTCAAGG
4928925 CTACCCACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.32, G:0.29, T:0.12
Consensus pattern (21 bp):
GGAGGATACCCCCCTCAAGGA
Found at i:4928935 original size:15 final size:15
Alignment explanation
Indices: 4928911--4928945 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
4928901 AGGAGGAGGA
*
4928911 TACCCCCCTCAAGGC
1 TACCCACCTCAAGGC
4928926 TACCCACCTCAAGGC
1 TACCCACCTCAAGGC
4928941 TACCC
1 TACCC
4928946 TCCAGCTGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.51, G:0.11, T:0.14
Consensus pattern (15 bp):
TACCCACCTCAAGGC
Found at i:4929286 original size:9 final size:9
Alignment explanation
Indices: 4929251--4929287 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
4929241 TCACCACCTG
*
4929251 GCTCATGGG
1 GCTCATGGT
4929260 GCTCATGGT
1 GCTCATGGT
4929269 GCTCATGGT
1 GCTCATGGT
4929278 GCTCATGGT
1 GCTCATGGT
4929287 G
1 G
4929288 GTGGTCATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.11, C:0.22, G:0.38, T:0.30
Consensus pattern (9 bp):
GCTCATGGT
Found at i:4929358 original size:24 final size:24
Alignment explanation
Indices: 4929328--4929378 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
4929318 AACATCATGG
* *
4929328 TGGGAAATTCAAGCATGGGAAGCA
1 TGGGAAATTCAAGCACGGAAAGCA
4929352 TGGGAAATTCAAGCACGGAAAGCA
1 TGGGAAATTCAAGCACGGAAAGCA
4929376 TGG
1 TGG
4929379 ATTTGGAGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.33, T:0.16
Consensus pattern (24 bp):
TGGGAAATTCAAGCACGGAAAGCA
Found at i:4929651 original size:2 final size:2
Alignment explanation
Indices: 4929644--4929669 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4929634 GTCCAATTCG
4929644 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4929670 GAAAACCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4935371 original size:4 final size:4
Alignment explanation
Indices: 4935362--4935389 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
4935352 TTTTTTATTA
4935362 CTAT CTAT CTAT CTAT CTAT CTAT CTAT
1 CTAT CTAT CTAT CTAT CTAT CTAT CTAT
4935390 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
CTAT
Found at i:4942864 original size:5 final size:5
Alignment explanation
Indices: 4942848--4942879 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
4942838 GCAAGTTGGC
4942848 AATAA TAATAA AATAA AATAA AATAA AATAA A
1 AATAA -AATAA AATAA AATAA AATAA AATAA A
4942880 TAGATATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:4942912 original size:2 final size:2
Alignment explanation
Indices: 4942905--4942929 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4942895 TCTTTAAAAT
4942905 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4942930 TCTTTTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4946862 original size:2 final size:2
Alignment explanation
Indices: 4946803--4946842 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
4946793 TCTATTGATT
4946803 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4946843 GTGTGTGTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4947209 original size:2 final size:2
Alignment explanation
Indices: 4947202--4947234 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4947192 ACAAACCTCT
4947202 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4947235 AACAGAGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4952847 original size:2 final size:2
Alignment explanation
Indices: 4952840--4952872 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
4952830 CATAGGAAGC
*
4952840 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4952873 CAGAGAGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4952879 original size:2 final size:2
Alignment explanation
Indices: 4952874--4952908 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4952864 ATATATATAC
4952874 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4952909 TTAGTCGGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4953990 original size:2 final size:2
Alignment explanation
Indices: 4953985--4954023 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
4953975 TCTCTCTTTC
* * *
4953985 TA TA TA TA CA TA TA TA TA TA TA TA TA TA CA AA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4954024 GTGGATCCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:4954000 original size:10 final size:10
Alignment explanation
Indices: 4953985--4954022 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
4953975 TCTCTCTTTC
4953985 TATATATACA
1 TATATATACA
*
4953995 TATATATATA
1 TATATATACA
4954005 TATATATACA
1 TATATATACA
*
4954015 AATATATA
1 TATATATA
4954023 TGTGGATCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (10 bp):
TATATATACA
Found at i:4956871 original size:21 final size:22
Alignment explanation
Indices: 4956842--4956887 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
4956832 TGTTCAGACA
* *
4956842 AGTAGTACTCCACAGCAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
4956864 AGTA-TACTCCAAAACAGGTGG
1 AGTAGTACTCCAAAACAGGTGG
4956885 AGT
1 AGT
4956888 TTCAACAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.20
Consensus pattern (22 bp):
AGTAGTACTCCAAAACAGGTGG
Found at i:4958802 original size:24 final size:26
Alignment explanation
Indices: 4958751--4958808 Score: 93
Period size: 24 Copynumber: 2.3 Consensus size: 26
4958741 TGGGTGGCTA
*
4958751 GTCAACAAAAGCCACCCTTTGTGTTT
1 GTCAACAAAAGCCACCCTATGTGTTT
4958777 GTCAACAAAAGCCA-CC-ATGTGTTT
1 GTCAACAAAAGCCACCCTATGTGTTT
4958801 GTCAACAA
1 GTCAACAA
4958809 TGGTGGTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 15 0.48
25 2 0.06
26 14 0.45
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (26 bp):
GTCAACAAAAGCCACCCTATGTGTTT
Found at i:4958837 original size:27 final size:27
Alignment explanation
Indices: 4958798--4958863 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
4958788 CCACCATGTG
* *
4958798 TTTGTCAACAATGGTGGTTAC-TTTGTA
1 TTTGTCAAAAATGATGGTT-CTTTTGTA
* *
4958825 TTTGTCAAAAATGATGGTTCTTTTTTG
1 TTTGTCAAAAATGATGGTTCTTTTGTA
4958852 TTTGTCAAAAAT
1 TTTGTCAAAAAT
4958864 TATGACTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (27 bp):
TTTGTCAAAAATGATGGTTCTTTTGTA
Found at i:4958880 original size:28 final size:27
Alignment explanation
Indices: 4958825--4958880 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
4958815 TTACTTTGTA
* *
4958825 TTTGTCAAAAATGATGGTTCTTTTTTG
1 TTTGTCAAAAATGATGCTTCTTGTTTG
* *
4958852 TTTGTCAAAAATTATGACTTGTTGTTTG
1 TTTGTCAAAAATGATG-CTTCTTGTTTG
4958880 T
1 T
4958881 CAAAATTGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.23, C:0.07, G:0.18, T:0.52
Consensus pattern (27 bp):
TTTGTCAAAAATGATGCTTCTTGTTTG
Found at i:4961257 original size:35 final size:39
Alignment explanation
Indices: 4961212--4961291 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 39
4961202 TTATTTTATT
* *
4961212 TATTTTATATTTAAAA-TTT-ATATA-TAATTAATA-AA
1 TATTTAATATTTAAAATTTTAATATATTAAATAATATAA
4961247 TATTTAATATTTAAAATTTTAATATATTAAATAATATAA
1 TATTTAATATTTAAAATTTTAATATATTAAATAATATAA
4961286 -ATTTAA
1 TATTTAA
4961292 AATATATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
35 15 0.38
36 3 0.08
37 5 0.13
38 14 0.36
39 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (39 bp):
TATTTAATATTTAAAATTTTAATATATTAAATAATATAA
Found at i:4961261 original size:15 final size:15
Alignment explanation
Indices: 4961243--4961305 Score: 58
Period size: 15 Copynumber: 4.0 Consensus size: 15
4961233 ATATAATTAA
4961243 TAAATATTTAATATT
1 TAAATATTTAATATT
4961258 TAAA-ATTTTAATATAT
1 TAAATA-TTTAATAT-T
*
4961274 TAAATAATATAA-ATT
1 TAAAT-ATTTAATATT
4961289 TAAAATATATTAATATT
1 T-AAATAT-TTAATATT
4961306 AATATTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
14 1 0.03
15 16 0.41
16 14 0.36
17 7 0.18
18 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAAATATTTAATATT
Found at i:4961273 original size:24 final size:24
Alignment explanation
Indices: 4961244--4961305 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
4961234 TATAATTAAT
4961244 AAATATTTAATATTTA-AAATTTTA
1 AAATATTTAATATTTATAAA-TTTA
* * *
4961268 ATATATTAAATA-ATATAAATTTA
1 AAATATTTAATATTTATAAATTTA
4961291 AAATATATTAATATT
1 AAATAT-TTAATATT
4961306 AATATTAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
AAATATTTAATATTTATAAATTTA
Found at i:4961319 original size:27 final size:25
Alignment explanation
Indices: 4961267--4961320 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
4961257 TTAAAATTTT
*
4961267 AATATATTAAATAATATAAATTTAA
1 AATATATTAAATAATATAAATATAA
4961292 AATATATTAATATTAATATTAAA-ATAA
1 AATATATTAA-A-TAATA-TAAATATAA
4961319 AA
1 AA
4961321 ATAATACGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 10 0.40
26 1 0.04
27 10 0.40
28 4 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
AATATATTAAATAATATAAATATAA
Found at i:4965978 original size:2 final size:2
Alignment explanation
Indices: 4965971--4966001 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4965961 ATCGTTCAGA
4965971 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4966002 CAACTCTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4972136 original size:2 final size:2
Alignment explanation
Indices: 4972124--4972163 Score: 71
Period size: 2 Copynumber: 19.5 Consensus size: 2
4972114 CTATTATTTC
4972124 TA TA CTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4972164 GTAATAAGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4984710 original size:19 final size:20
Alignment explanation
Indices: 4984661--4984715 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 20
4984651 GTTTTGTCTG
*
4984661 TTTCCAGAAAGTTAAT-TAA
1 TTTCCAGAAAGTTAATCAAA
*
4984680 -TT-CAGCAAGTT-ATCAAA
1 TTTCCAGAAAGTTAATCAAA
4984697 TTTCCAGAAAGTTAATCAA
1 TTTCCAGAAAGTTAATCAA
4984716 GTCATTATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 2 0.07
17 10 0.34
18 4 0.14
19 8 0.28
20 5 0.17
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.33
Consensus pattern (20 bp):
TTTCCAGAAAGTTAATCAAA
Found at i:4988018 original size:38 final size:39
Alignment explanation
Indices: 4987967--4988041 Score: 143
Period size: 38 Copynumber: 1.9 Consensus size: 39
4987957 GGGGCTGTTA
4987967 CCGTACCTTGTATAGTGCTCT-CTTTTTTTTTTCTTTCC
1 CCGTACCTTGTATAGTGCTCTCCTTTTTTTTTTCTTTCC
4988005 CCGTACCTTGTATAGTGCTCTCCTTTTTTTTTTCTTT
1 CCGTACCTTGTATAGTGCTCTCCTTTTTTTTTTCTTT
4988042 TTCTTTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 21 0.58
39 15 0.42
ACGTcount: A:0.08, C:0.25, G:0.11, T:0.56
Consensus pattern (39 bp):
CCGTACCTTGTATAGTGCTCTCCTTTTTTTTTTCTTTCC
Found at i:4988951 original size:2 final size:2
Alignment explanation
Indices: 4988937--4988970 Score: 52
Period size: 2 Copynumber: 17.0 Consensus size: 2
4988927 AATTTGCTAC
4988937 AT AT AT A- ACT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
4988971 TACAACTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.03
2 28 0.93
3 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4989981 original size:2 final size:2
Alignment explanation
Indices: 4989976--4990018 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
4989966 TCTCTCTCTC
* *
4989976 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4990018 T
1 T
4990019 GTCTGCCCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:4991111 original size:4 final size:4
Alignment explanation
Indices: 4991102--4991144 Score: 77
Period size: 4 Copynumber: 10.8 Consensus size: 4
4991092 TTGGCGGTCC
*
4991102 TCTT TCTT TCTT TCGT TCTT TCTT TCTT TCTT TCTT TCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
4991145 GTGACGTGCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (4 bp):
TCTT
Found at i:4991498 original size:49 final size:49
Alignment explanation
Indices: 4991438--4991537 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 49
4991428 TTCTATGTCT
* *
4991438 GCAATGCCAACTTGGCTGTCTTAATTAATTTTTAAAGGGCATGTCTTTG
1 GCAATGCCAACTTGGCTGTCTTAATTAACTTTTAAAGGGCATGCCTTTG
*
4991487 GCAATGTCAACTTGGCTGTCTTAATTAACTTTTAAAGGGCATGCCTTTG
1 GCAATGCCAACTTGGCTGTCTTAATTAACTTTTAAAGGGCATGCCTTTG
4991536 GC
1 GC
4991538 CGTTGCTTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (49 bp):
GCAATGCCAACTTGGCTGTCTTAATTAACTTTTAAAGGGCATGCCTTTG
Found at i:4992461 original size:2 final size:2
Alignment explanation
Indices: 4992442--4992486 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
4992432 AGCCTGAACC
* * *
4992442 AT AT AC AT AT AC AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4992484 AT A
1 AT A
4992487 AACTGACAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:4992669 original size:2 final size:2
Alignment explanation
Indices: 4992662--4992699 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4992652 TTTCCTAATC
4992662 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
4992700 ATATATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:4992748 original size:2 final size:2
Alignment explanation
Indices: 4992699--4992728 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4992689 TCTCTCTCTC
4992699 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4992729 AAGATTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4997385 original size:2 final size:2
Alignment explanation
Indices: 4997378--4997417 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
4997368 TTCAATATTT
4997378 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4997418 CACACTGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5000418 original size:18 final size:17
Alignment explanation
Indices: 5000395--5000429 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
5000385 TAAAGTTGAG
5000395 TTTTCTTTCTTTCTTTTC
1 TTTTCTTT-TTTCTTTTC
*
5000413 TTTTCTTTTTTTTTTTC
1 TTTTCTTTTTTCTTTTC
5000430 AATTTGATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTCTTTTTTCTTTTC
Found at i:5001509 original size:6 final size:6
Alignment explanation
Indices: 5001436--5001473 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
5001426 ATATGAGCAC
*
5001436 GGCAAT GGCAAT GGCAAT GGCAAT GGCAGT GGCAAT GG
1 GGCAAT GGCAAT GGCAAT GGCAAT GGCAAT GGCAAT GG
5001474 GCCCGTGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.29, C:0.16, G:0.39, T:0.16
Consensus pattern (6 bp):
GGCAAT
Found at i:5003637 original size:2 final size:2
Alignment explanation
Indices: 5003630--5003665 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
5003620 AGTACTTTAC
5003630 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5003666 CTAAAGATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5042421 original size:2 final size:2
Alignment explanation
Indices: 5042414--5042464 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
5042404 TAGAATATTT
5042414 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5042456 TA TA TA TA T
1 TA TA TA TA T
5042465 CGAAATGCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5042705 original size:36 final size:36
Alignment explanation
Indices: 5042660--5042731 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
5042650 CATCGATCGG
5042660 CCCGCCCCCCCAACCCAATGCCCTCAAATTCAAAGT
1 CCCGCCCCCCCAACCCAATGCCCTCAAATTCAAAGT
* *
5042696 CCCGTCCCCCCAACCCAATGCCCTCAAATTCGAAGT
1 CCCGCCCCCCCAACCCAATGCCCTCAAATTCAAAGT
5042732 TCTCATCCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.26, C:0.49, G:0.10, T:0.15
Consensus pattern (36 bp):
CCCGCCCCCCCAACCCAATGCCCTCAAATTCAAAGT
Found at i:5044403 original size:3 final size:3
Alignment explanation
Indices: 5044395--5044432 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
5044385 ATGAAAAGAG
5044395 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
5044433 GTATATAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:5048291 original size:2 final size:2
Alignment explanation
Indices: 5048284--5048317 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
5048274 ATGATGAATA
5048284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5048318 GGCAAATACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5048415 original size:3 final size:3
Alignment explanation
Indices: 5048407--5048435 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
5048397 ATGGTGCATG
5048407 TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
5048436 GCTGTGAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.34, T:0.34
Consensus pattern (3 bp):
TGC
Found at i:5053475 original size:2 final size:2
Alignment explanation
Indices: 5053468--5053520 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
5053458 TTTTCATTAT
*
5053468 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
5053510 TC TC TC TC TC T
1 TC TC TC TC TC T
5053521 ATCTATCTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:5054941 original size:7 final size:7
Alignment explanation
Indices: 5054929--5054959 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
5054919 TATTATGCAA
5054929 AGCAGGC
1 AGCAGGC
5054936 AGCAGGC
1 AGCAGGC
5054943 AGCAGGC
1 AGCAGGC
*
5054950 AGCAGCC
1 AGCAGGC
5054957 AGC
1 AGC
5054960 TATAGCTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.32, G:0.39, T:0.00
Consensus pattern (7 bp):
AGCAGGC
Found at i:5056641 original size:23 final size:23
Alignment explanation
Indices: 5056600--5056643 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
5056590 ACGTTCAACC
* * *
5056600 AAAACAAACCGAAAGAAAAAAGA
1 AAAACAAAACAAAACAAAAAAGA
5056623 AAAACAAAACAAAACAAAAAA
1 AAAACAAAACAAAACAAAAAA
5056644 AATGAGCTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.80, C:0.14, G:0.07, T:0.00
Consensus pattern (23 bp):
AAAACAAAACAAAACAAAAAAGA
Found at i:5072790 original size:17 final size:18
Alignment explanation
Indices: 5072751--5072797 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
5072741 TAAATTTTTG
*
5072751 TAAAAATAAAAAAATATTT
1 TAAAAAT-ATAAAATATTT
5072770 TAAAAATATAAAATA-TT
1 TAAAAATATAAAATATTT
*
5072787 TAAAATTATAA
1 TAAAAATATAA
5072798 TTTTAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 12 0.46
18 7 0.27
19 7 0.27
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAAAATATAAAATATTT
Found at i:5072809 original size:13 final size:14
Alignment explanation
Indices: 5072781--5072822 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
5072771 AAAAATATAA
5072781 AATATTTAAAATTAT
1 AATATTTAAAA-TAT
5072796 AAT-TTTAAAATAT
1 AATATTTAAAATAT
*
5072809 -ATATTCAAAATAT
1 AATATTTAAAATAT
5072822 A
1 A
5072823 TAAAATTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 2 0.08
13 12 0.50
14 7 0.29
15 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (14 bp):
AATATTTAAAATAT
Found at i:5078734 original size:4 final size:4
Alignment explanation
Indices: 5078727--5078751 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
5078717 AATATGCATG
5078727 CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA C
5078752 GTGTGTGTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:5087811 original size:23 final size:22
Alignment explanation
Indices: 5087777--5087820 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
5087767 TTAAAATAAT
5087777 TTAAACTCAATTTAACCCGAATG
1 TTAAACTCAA-TTAACCCGAATG
*
5087800 TTAAAC-CTAATTGACCCGAAT
1 TTAAACTC-AATTAACCCGAAT
5087821 CTAAAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (22 bp):
TTAAACTCAATTAACCCGAATG
Found at i:5088811 original size:36 final size:36
Alignment explanation
Indices: 5088766--5088921 Score: 118
Period size: 36 Copynumber: 4.0 Consensus size: 36
5088756 TTATTACTAA
5088766 TAAATTTTAATAAATATATTAATTTTATTTCATTCAT
1 TAAA-TTTAATAAATATATTAATTTTATTTCATTCAT
* * * *
5088803 TGAATTTAATATATATATTAAATTTATTTTATGTACTATT
1 TAAATTTAATAAATATATTAATTTTATTTCAT-T-C-A-T
*
5088843 TACAATATAA-AAATTATTAAAAATTAATTTTATATT-ATTCAT
1 TA-AATTTAATAAA-TA-T----ATTAATTTTAT-TTCATTCAT
*
5088885 TAAATTTAATATAATATATTAATTTTATCTCATTCAT
1 TAAATTTAATA-AATATATTAATTTTATTTCATTCAT
5088922 AATTTTTTAT
Statistics
Matches: 94, Mismatches: 10, Indels: 30
0.70 0.07 0.22
Matches are distributed among these distances:
36 26 0.28
37 21 0.22
38 1 0.01
39 1 0.01
40 4 0.04
41 15 0.16
42 7 0.07
43 3 0.03
44 1 0.01
45 1 0.01
46 12 0.13
47 2 0.02
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.51
Consensus pattern (36 bp):
TAAATTTAATAAATATATTAATTTTATTTCATTCAT
Found at i:5088896 original size:19 final size:19
Alignment explanation
Indices: 5088868--5088952 Score: 77
Period size: 19 Copynumber: 4.5 Consensus size: 19
5088858 ATTAAAAATT
5088868 AATTTTATATTATTCATTA
1 AATTTTATATTATTCATTA
* *
5088887 AATTTAATATAATAT-ATT-
1 AATTTTATATTAT-TCATTA
* *
5088905 AATTTTATCTCATTCA-TA
1 AATTTTATATTATTCATTA
*
5088923 ATTTTTTATATTATTCATTA
1 A-ATTTTATATTATTCATTA
*
5088943 AATTTAATAT
1 AATTTTATAT
5088953 AAAATATTAA
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
17 2 0.04
18 12 0.24
19 33 0.65
20 4 0.08
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (19 bp):
AATTTTATATTATTCATTA
Found at i:5089437 original size:20 final size:20
Alignment explanation
Indices: 5089408--5089483 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
5089398 TTTTTACCTT
5089408 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTTTTC
* * * *
5089428 AATATATCGATACATGTATG
1 AATGTATCGATACATTTTTC
* * *
5089448 AATGTATCGATAAATTCTAC
1 AATGTATCGATACATTTTTC
5089468 AATGTATCGATACATT
1 AATGTATCGATACATT
5089484 ATGTCTTTTT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTTTTC
Found at i:5089476 original size:40 final size:39
Alignment explanation
Indices: 5089408--5089486 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
5089398 TTTTTACCTT
* * *
5089408 AATGTATCGATACATTTTTCAATATATCGATACATGTATG
1 AATGTATCGATAAATTCTACAATATATCGATACAT-TATG
*
5089448 AATGTATCGATAAATTCTACAATGTATCGATACATTATG
1 AATGTATCGATAAATTCTACAATATATCGATACATTATG
5089487 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (39 bp):
AATGTATCGATAAATTCTACAATATATCGATACATTATG
Found at i:5090433 original size:23 final size:23
Alignment explanation
Indices: 5090403--5090451 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
5090393 TGACCATGCA
5090403 TTTTTTATTATGTTTCATGCATT
1 TTTTTTATTATGTTTCATGCATT
5090426 TTTTTTATTATGTTTCATGCATT
1 TTTTTTATTATGTTTCATGCATT
5090449 TTT
1 TTT
5090452 AACATGTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.67
Consensus pattern (23 bp):
TTTTTTATTATGTTTCATGCATT
Found at i:5090458 original size:20 final size:21
Alignment explanation
Indices: 5090397--5090451 Score: 92
Period size: 23 Copynumber: 2.5 Consensus size: 21
5090387 AGCCTTTGAC
5090397 CATGCATTTTTTATTATGTTT
1 CATGCATTTTTTATTATGTTT
5090418 CATGCATTTTTTTTATTATGTTT
1 CATGCA--TTTTTTATTATGTTT
5090441 CATGCATTTTT
1 CATGCATTTTT
5090452 AACATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
21 11 0.34
23 21 0.66
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (21 bp):
CATGCATTTTTTATTATGTTT
Found at i:5094220 original size:4 final size:4
Alignment explanation
Indices: 5094211--5094236 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
5094201 TTTATTAAAA
5094211 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
5094237 CTAATAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:5094503 original size:2 final size:2
Alignment explanation
Indices: 5094496--5094525 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
5094486 TATTAAGGTG
5094496 TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5094526 CTACTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5102595 original size:2 final size:2
Alignment explanation
Indices: 5102586--5102621 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
5102576 TGTATATAAC
*
5102586 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5102622 TTAAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:5103583 original size:14 final size:13
Alignment explanation
Indices: 5103560--5103594 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
5103550 TAAATAAATG
*
5103560 TTTTTCTTTTTTT
1 TTTTTCTTTTTAT
5103573 TTTTTCATTTTTAT
1 TTTTTC-TTTTTAT
5103587 TTTTTCTT
1 TTTTTCTT
5103595 AAAGAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTCTTTTTAT
Found at i:5105686 original size:35 final size:35
Alignment explanation
Indices: 5105645--5105711 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
5105635 TGAGAAAGGA
*
5105645 AGATGGAGATTGATGCTTGATTTTGTGGGAGATGG
1 AGATGGAGATTGATGCTGGATTTTGTGGGAGATGG
* *
5105680 AGATGGAGGTTGATGGTGGATTTTGTGGGAGA
1 AGATGGAGATTGATGCTGGATTTTGTGGGAGA
5105712 CAGGGATGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.22, C:0.01, G:0.43, T:0.33
Consensus pattern (35 bp):
AGATGGAGATTGATGCTGGATTTTGTGGGAGATGG
Found at i:5105734 original size:35 final size:35
Alignment explanation
Indices: 5105663--5105744 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
5105653 ATTGATGCTT
* * * * *
5105663 GATTTTGTGGGAGATGGAGATGGAGGTTGATGGTG
1 GATTTTGTGGGAGAAGGAGATGAAGATCGATCGTG
5105698 GATTTTGTGGGAGACAGG-GATGAAGATCGATCGTG
1 GATTTTGTGGGAGA-AGGAGATGAAGATCGATCGTG
*
5105733 GATTTTATGGGA
1 GATTTTGTGGGA
5105745 TTAGAGATAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
35 38 0.95
36 2 0.05
ACGTcount: A:0.23, C:0.04, G:0.43, T:0.30
Consensus pattern (35 bp):
GATTTTGTGGGAGAAGGAGATGAAGATCGATCGTG
Found at i:5109898 original size:13 final size:13
Alignment explanation
Indices: 5109880--5109940 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 13
5109870 ATTACTCAAA
*
5109880 TGTATCGATACAT
1 TGTATCAATACAT
5109893 TGTATCAATACAT
1 TGTATCAATACAT
*
5109906 TG-AT---T--TT
1 TGTATCAATACAT
*
5109913 TGTATCGATACAT
1 TGTATCAATACAT
5109926 TGTATCAATACAT
1 TGTATCAATACAT
5109939 TG
1 TG
5109941 ATCTTTGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
7 3 0.08
8 2 0.05
9 1 0.03
11 1 0.03
12 2 0.05
13 29 0.76
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (13 bp):
TGTATCAATACAT
Found at i:5109922 original size:33 final size:33
Alignment explanation
Indices: 5109880--5109958 Score: 149
Period size: 33 Copynumber: 2.4 Consensus size: 33
5109870 ATTACTCAAA
*
5109880 TGTATCGATACATTGTATCAATACATTGATTTT
1 TGTATCGATACATTGTATCAATACATTGATCTT
5109913 TGTATCGATACATTGTATCAATACATTGATCTT
1 TGTATCGATACATTGTATCAATACATTGATCTT
5109946 TGTATCGATACAT
1 TGTATCGATACAT
5109959 GCAGGCAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATTGTATCAATACATTGATCTT
Found at i:5109991 original size:52 final size:50
Alignment explanation
Indices: 5109926--5110074 Score: 199
Period size: 52 Copynumber: 2.9 Consensus size: 50
5109916 ATCGATACAT
* *
5109926 TGTATCAATACATTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
5109978 TGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
5110030 TGTATCGATACACTATTAAATGTATCGATACATGCAAGCAAATTT
1 TGTATCGATACATTATT--ATGTATCGATACATGCAGGCAAATTT
5110075 CATGTTTCAG
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (50 bp):
TGTATCGATACATTATTATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:5114186 original size:20 final size:20
Alignment explanation
Indices: 5114161--5114198 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
5114151 GTAAAAACAC
5114161 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
5114181 AGAATGTATCGATACATT
1 AGAATGTATCGATACATT
5114199 TGGGTACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:5114839 original size:29 final size:29
Alignment explanation
Indices: 5114751--5115982 Score: 1606
Period size: 28 Copynumber: 42.9 Consensus size: 29
5114741 AAAAAAAATG
*
5114751 GTGCCACTAACTTGTGTGGGCTTTGAAAAGA
1 GTGCCACTGAC-T-TGTGGGCTTTGAAAAGA
*
5114782 GTTGCCAAC-AACTCGTGTGGGCTTTGAAAAGA
1 G-TGCC-ACTGACT--TGTGGGCTTTGAAAAGA
*
5114814 GTGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
5114842 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
5114871 GTGCCACTGACTTGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5114899 GTGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5114927 GTGCCACTGACTTGTGGG-TTTTAAAATG-
1 GTGCCACTGACTTGTGGGCTTTGAAAA-GA
*
5114955 GTGCCACTGACTTGTGGGCTTTGAAACGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
5114984 -TGCCATTAACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
5115012 GTGCCACTGACTTGTGAGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115040 GTGCCACTGACTTGTGGGCTTCG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115068 GTGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
5115096 GTACCACTGACTTGTGGGCTTTGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
5115125 GTGCCACTGACTTATGGGCTTTGAAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
5115154 GTGCCACTGACTTGT-GGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
5115182 GTGCCACTAACTTGTGGGCTTTG-ATAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
5115210 GTGCCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
5115238 GTGCCACTAATTTGTGAGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
5115266 GTGCCACTGACTGGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
5115294 GTGCCACTGACTTGTGGGCTTTGCAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
5115323 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115352 GTGCCACTGACTTATGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115381 GTGCCACTGACTAGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115410 GTGACACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
5115439 GTGCCATTAACTTGTGGGCTTTGAAATG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
5115467 GTGCCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115495 GTGCCACTGACTTGCGTGGGCTTT-AAAAGG
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
* *
5115525 GTGCCACTGACTTGCGTAGGCTTT-AAAAGG
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
*
5115555 GTGCCACTGACTTGCATGGGCTTTGAAAGGA
1 GTGCCACTGACTTG--TGGGCTTTGAAAAGA
5115586 -TGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115614 GTGCCACTAACTTGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
5115642 GTGCCATTGACTTGTAGGCTTTG-AAATA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115670 GTGCCACTGACTTGTGGGTTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115698 GTGCCACTGACTTGCGTGGGCTTT-AAAAGG
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
*
5115728 GTGCCACTGACTTGCGTGGGCTTT-AAAAGG
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
*
5115758 GTGCCACTAACTTGCTGGGCTTTGAAAAGA
1 GTGCCACTGACTTG-TGGGCTTTGAAAAGA
* *
5115788 -TGCCACTGACTTAT-GGTTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115815 GTGTCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115843 GTGCCACTCACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
5115871 ATGCCATTGACTTATGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115900 GTGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
5115928 GTGCCACTGACTCGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
5115957 GTGCCACTGACTTGTGGGCTTTGAAA
1 GTGCCACTGACTTGTGGGCTTTGAAA
5115983 GGGATGAACA
Statistics
Matches: 1073, Mismatches: 96, Indels: 66
0.87 0.08 0.05
Matches are distributed among these distances:
27 25 0.02
28 512 0.48
29 359 0.33
30 136 0.13
31 13 0.01
32 26 0.02
33 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (29 bp):
GTGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:5114867 original size:57 final size:57
Alignment explanation
Indices: 5114797--5115985 Score: 1578
Period size: 57 Copynumber: 20.8 Consensus size: 57
5114787 CAACAACTCG
5114797 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
*
5114854 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
5114911 TGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGTTTTAAAATGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
5114967 TGTGGGCTTTGAAACGA-TGCCATTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
* * * *
5115024 TGTGAGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTCGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* *
5115080 TGTGGGCTTTG-AAAGGGTACCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACT
* * * *
5115137 TATGGGCTTTGAAAAGGGTGCCACTGACTTGT-GGCTTTGAAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
* * * * *
5115194 TGTGGGCTTTG-ATAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTAATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
5115250 TGTGAGCTTTG-AAAGGGTGCCACTGACTGGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
5115306 TGTGGGCTTTGCAAGGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
* * * *
5115364 TATGGGCTTTGAAAAGAGTGCCACTGACTAGTGGGCTTTGAAAAGAGTGACACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
* * *
5115422 TGTGGGCTTTGAAAAGAGTGCCATTAACTTGTGGGCTTTGAAATGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
*
5115479 TGTGGGCTTTG-AAAGAGTGCCACTGACTTGCGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTT--GTGGGCTTTGAAAGGGTGCCACTGACT
* * *
5115537 TGCGTAGGCTTT-AAAAGGGTGCCACTGACTTGCATGGGCTTTGAAAGGATGCCACTGACT
1 T--GTGGGCTTTGAAAAGAGTGCCACTGACTTG--TGGGCTTTGAAAGGGTGCCACTGACT
* * *
5115597 TGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
5115654 TGTAGGCTTTG-AAATAGTGCCACTGACTTGTGGGTTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
5115710 TGCGTGGGCTTT-AAAAGGGTGCCACTGACTTGCGTGGGCTTTAAAAGGGTGCCACTAACT
1 T--GTGGGCTTTGAAAAGAGTGCCACTGACTT--GTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
5115770 TGCTGGGCTTTGAAAAGA-TGCCACTGACTTAT-GGTTTTGAAAAGAGTGTCACTGACT
1 TG-TGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
* ** *
5115827 TGTGGGCTTTG-AAAGAGTGCCACTCACTTGTGGGCTTTGAAAGAATGCCATTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
*
5115883 TATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
*
5115940 CGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
5115986 ATGAACATTT
Statistics
Matches: 1003, Mismatches: 101, Indels: 56
0.86 0.09 0.05
Matches are distributed among these distances:
55 5 0.00
56 331 0.33
57 362 0.36
58 188 0.19
59 38 0.04
60 79 0.08
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (57 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:5117221 original size:20 final size:18
Alignment explanation
Indices: 5117198--5117274 Score: 77
Period size: 19 Copynumber: 4.2 Consensus size: 18
5117188 TGTAGACCCC
5117198 TTTCTTTTTTTTTGCTATTT
1 TTTCTTTTTTTTTG-T-TTT
*
5117218 TTTCTTGGTTTTTTGTTTT
1 TTTCTT-TTTTTTTGTTTT
*
5117237 TTTGTTTTGTTTTTG-TTT
1 TTTCTTTT-TTTTTGTTTT
*
5117255 TGT-TTTTTTTTTGTTTT
1 TTTCTTTTTTTTTGTTTT
5117272 TTT
1 TTT
5117275 TTGGGGTGCA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
16 6 0.12
17 9 0.18
18 6 0.12
19 14 0.29
20 7 0.14
21 7 0.14
ACGTcount: A:0.01, C:0.04, G:0.12, T:0.83
Consensus pattern (18 bp):
TTTCTTTTTTTTTGTTTT
Found at i:5117231 original size:13 final size:12
Alignment explanation
Indices: 5117202--5117276 Score: 54
Period size: 11 Copynumber: 6.7 Consensus size: 12
5117192 GACCCCTTTC
5117202 TTTTTTTTTGCT
1 TTTTTTTTTGCT
* *
5117214 ATTTTTTCTTG-G
1 -TTTTTTTTTGCT
*
5117226 TTTTTTGTT--T
1 TTTTTTTTTGCT
*
5117236 TTTTGTTTTG-T
1 TTTTTTTTTGCT
*
5117247 TTTTGTTTTG-T
1 TTTTTTTTTGCT
5117258 TTTTTTTTTG-T
1 TTTTTTTTTGCT
5117269 TTTTTTTT
1 TTTTTTTT
5117277 GGGGTGCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
10 7 0.13
11 38 0.70
13 9 0.17
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.84
Consensus pattern (12 bp):
TTTTTTTTTGCT
Found at i:5117244 original size:5 final size:5
Alignment explanation
Indices: 5117228--5117277 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
5117218 TTTCTTGGTT
* *
5117228 TTTTG -TTT- TTTTG TTTTG TTTTTG TTTTG TTTTTT TTTTG TTTTT TTTTG
1 TTTTG TTTTG TTTTG TTTTG -TTTTG TTTTG -TTTTG TTTTG TTTTG TTTTG
5117278 GGGTGCAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 6 0.16
5 22 0.59
6 9 0.24
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (5 bp):
TTTTG
Found at i:5117249 original size:11 final size:11
Alignment explanation
Indices: 5117235--5117277 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
5117225 GTTTTTTGTT
5117235 TTTTTGTTTTG
1 TTTTTGTTTTG
5117246 TTTTTGTTTTG
1 TTTTTGTTTTG
*
5117257 TTTTTTTTTTG
1 TTTTTGTTTTG
5117268 TTTTT-TTTTG
1 TTTTTGTTTTG
5117278 GGGTGCAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 5 0.16
11 26 0.84
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (11 bp):
TTTTTGTTTTG
Found at i:5117255 original size:16 final size:16
Alignment explanation
Indices: 5117236--5117277 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
5117226 TTTTTTGTTT
5117236 TTTTGTTTTGTTTTTG
1 TTTTGTTTTGTTTTTG
*
5117252 TTTTGTTTTTTTTTTG
1 TTTTGTTTTGTTTTTG
*
5117268 TTTTTTTTTG
1 TTTTGTTTTG
5117278 GGGTGCAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (16 bp):
TTTTGTTTTGTTTTTG
Found at i:5117263 original size:27 final size:25
Alignment explanation
Indices: 5117202--5117277 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 25
5117192 GACCCCTTTC
5117202 TTTTTTTTTGCTATTTTTTCTTGGTTTTT
1 TTTTTTTTTG-T-TTTTTT-TT-GTTTTT
*
5117231 TGTTTTTTTGTTTTGTTTTTGTTTTGT
1 TTTTTTTTTGTTTT-TTTTTGTTTT-T
5117258 TTTTTTTTTGTTTTTTTTTG
1 TTTTTTTTTGTTTTTTTTTG
5117278 GGGTGCAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
26 11 0.26
27 19 0.44
28 4 0.09
29 9 0.21
ACGTcount: A:0.01, C:0.03, G:0.13, T:0.83
Consensus pattern (25 bp):
TTTTTTTTTGTTTTTTTTTGTTTTT
Found at i:5121896 original size:13 final size:13
Alignment explanation
Indices: 5121878--5121905 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
5121868 ATTACTCAAA
5121878 TGTATCGATACAT
1 TGTATCGATACAT
5121891 TGTATCGATACAT
1 TGTATCGATACAT
5121904 TG
1 TG
5121906 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5134477 original size:20 final size:20
Alignment explanation
Indices: 5134448--5134485 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
5134438 GTAAAAACAC
*
5134448 AGAATGTATCGATACATTGA
1 AGAATATATCGATACATTGA
5134468 AGAATATATCGATACATT
1 AGAATATATCGATACATT
5134486 TGGGTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (20 bp):
AGAATATATCGATACATTGA
Found at i:5139395 original size:25 final size:24
Alignment explanation
Indices: 5139367--5139444 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
5139357 TTTTAAATTT
5139367 ATTTTTAATTTAATTATATATATTA
1 ATTTTTAATTTAA-TATATATATTA
*
5139392 A-TTTTAATATTAATATAT-TATGTT
1 ATTTTTAAT-TTAATATATATAT-TA
* *
5139416 ATTTTT-ATTTAA-AAATAAATTA
1 ATTTTTAATTTAATATATATATTA
5139438 ATTTTTA
1 ATTTTTA
5139445 TTATTTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
22 10 0.23
23 9 0.20
24 16 0.36
25 9 0.20
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (24 bp):
ATTTTTAATTTAATATATATATTA
Found at i:5139665 original size:23 final size:24
Alignment explanation
Indices: 5139629--5139679 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
5139619 AAACTAAATT
*
5139629 TTTAAATAATAATA-ATTAATTAA
1 TTTAAATAATAATATATTAATAAA
*
5139652 TTTAAATAGA-AATATTTTAATAAA
1 TTTAAATA-ATAATATATTAATAAA
5139676 TTTA
1 TTTA
5139680 TTTTAAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
TTTAAATAATAATATATTAATAAA
Found at i:5146615 original size:27 final size:27
Alignment explanation
Indices: 5146581--5146645 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 27
5146571 AAAATATATT
5146581 TAAAAAATAAAAAAATAGAT-TTTTAA
1 TAAAAAATAAAAAAATAGATCTTTTAA
* * *
5146607 TAAATAAATCAAAATATATATCTTTTAAA
1 TAAA-AAATAAAAAAATAGATCTTTT-AA
5146636 TAGAAAAATA
1 TA-AAAAATA
5146646 TTAATAAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
26 4 0.13
27 13 0.42
28 4 0.13
29 8 0.26
30 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (27 bp):
TAAAAAATAAAAAAATAGATCTTTTAA
Found at i:5146644 original size:29 final size:26
Alignment explanation
Indices: 5146581--5146671 Score: 69
Period size: 29 Copynumber: 3.4 Consensus size: 26
5146571 AAAATATATT
5146581 TAAAAAATAAAAAAATAGATTTTTAA
1 TAAAAAATAAAAAAATAGATTTTTAA
* * *
5146607 TAAATAAATCAAAATATATATCTTTTAAA
1 TAAA-AAATAAAAAAATAGAT-TTTT-AA
** *
5146636 TAGAAAAATATTAATA-AGTATTTTT-A
1 TA-AAAAATAAAAAAATAG-ATTTTTAA
5146662 TAAAAAATAA
1 TAAAAAATAA
5146672 TAAAGCTCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
25 7 0.13
26 7 0.13
27 13 0.25
28 9 0.17
29 14 0.27
30 2 0.04
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (26 bp):
TAAAAAATAAAAAAATAGATTTTTAA
Found at i:5149001 original size:3 final size:3
Alignment explanation
Indices: 5148993--5149018 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
5148983 TCCTGGCCGC
5148993 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
5149019 CTATCTCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:5151681 original size:21 final size:21
Alignment explanation
Indices: 5151655--5151699 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
5151645 TGATGTGTAG
5151655 GCAAGTTAATAATTGTTTCCA
1 GCAAGTTAATAATTGTTTCCA
5151676 GCAAGTTAATAATTGTTTCCA
1 GCAAGTTAATAATTGTTTCCA
5151697 GCA
1 GCA
5151700 TAAACTATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (21 bp):
GCAAGTTAATAATTGTTTCCA
Found at i:5154059 original size:15 final size:15
Alignment explanation
Indices: 5154039--5154071 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
5154029 GCATCAAAGT
5154039 TTTTATATT-ATATAA
1 TTTTATATTGAT-TAA
5154054 TTTTATATTGATTAA
1 TTTTATATTGATTAA
5154069 TTT
1 TTT
5154072 CTGTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (15 bp):
TTTTATATTGATTAA
Found at i:5156792 original size:7 final size:7
Alignment explanation
Indices: 5156780--5156859 Score: 63
Period size: 7 Copynumber: 10.7 Consensus size: 7
5156770 GGGGGGGTTT
5156780 TTGGGGG
1 TTGGGGG
5156787 TTGGGGTG
1 TTGGGG-G
* *
5156795 TCGGGGTTA
1 TTGGGG--G
5156804 TTGGGGTG
1 TTGGGG-G
5156812 TT-GGGG
1 TTGGGGG
* *
5156818 TTCGAGGT
1 TT-GGGGG
5156826 TTGGGGG
1 TTGGGGG
5156833 TTGGTGGG
1 TTGG-GGG
5156841 TTGGGGG
1 TTGGGGG
5156848 TTGGGGG
1 TTGGGGG
5156855 TTGGG
1 TTGGG
5156860 TTTTTAGGGT
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
6 3 0.05
7 31 0.52
8 20 0.33
9 6 0.10
ACGTcount: A:0.03, C:0.03, G:0.61, T:0.34
Consensus pattern (7 bp):
TTGGGGG
Found at i:5156807 original size:17 final size:17
Alignment explanation
Indices: 5156787--5156819 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5156777 TTTTTGGGGG
5156787 TTGGGGTGTCGGGGTTA
1 TTGGGGTGTCGGGGTTA
*
5156804 TTGGGGTGTTGGGGTT
1 TTGGGGTGTCGGGGTT
5156820 CGAGGTTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.03, G:0.55, T:0.39
Consensus pattern (17 bp):
TTGGGGTGTCGGGGTTA
Found at i:5156807 original size:24 final size:22
Alignment explanation
Indices: 5156773--5156859 Score: 81
Period size: 22 Copynumber: 3.8 Consensus size: 22
5156763 GGGTTTAGGG
5156773 GGGGTTTTTGGGGGTTGGGGTGTC
1 GGGG-TTTTGGGGGTTGGGGT-TC
5156797 GGGGTTATTGGGGTGTTGGGGTTC
1 GGGGTT-TTGGGG-GTTGGGGTTC
*
5156821 GAGG-TTTGGGGGTTGGTGGGTT-
1 GGGGTTTTGGGGGTT-G-GGGTTC
*
5156843 GGGG-GTTGGGGGTTGGG
1 GGGGTTTTGGGGGTTGGG
5156860 TTTTTAGGGT
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
20 2 0.04
21 4 0.07
22 19 0.34
23 8 0.14
24 15 0.27
25 8 0.14
ACGTcount: A:0.02, C:0.02, G:0.61, T:0.34
Consensus pattern (22 bp):
GGGGTTTTGGGGGTTGGGGTTC
Found at i:5156876 original size:21 final size:21
Alignment explanation
Indices: 5156855--5156952 Score: 87
Period size: 21 Copynumber: 4.7 Consensus size: 21
5156845 GGGTTGGGGG
*
5156855 TTGGGTTTTTAGGGTTTAGGGT
1 TTGGG-TTTTAGGGTTAAGGGT
5156877 TTAGGG-TTTAGGGTTAAGGGT
1 TT-GGGTTTTAGGGTTAAGGGT
* *
5156898 TTGGGTATT-GGGTT-GGGGT
1 TTGGGTTTTAGGGTTAAGGGT
* *
5156917 TTCGG-TTTAGGGTTTAGGGT
1 TTGGGTTTTAGGGTTAAGGGT
*
5156937 TTAGGGTTTTCGGGTT
1 TT-GGGTTTTAGGGTT
5156953 TCGGGGTTCT
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
18 2 0.03
19 13 0.21
20 14 0.23
21 20 0.32
22 10 0.16
23 3 0.05
ACGTcount: A:0.10, C:0.02, G:0.43, T:0.45
Consensus pattern (21 bp):
TTGGGTTTTAGGGTTAAGGGT
Found at i:5157259 original size:15 final size:14
Alignment explanation
Indices: 5156779--5158127 Score: 790
Period size: 15 Copynumber: 90.2 Consensus size: 14
5156769 AGGGGGGGTT
*
5156779 TTTGGGGGTTGGGG
1 TTTGGGGTTTGGGG
*
5156793 TGTCGGGGTTATTGGGG
1 T-TTGGGG-T-TTGGGG
* *
5156810 TGTTGGGGTTCGAGG
1 T-TTGGGGTTTGGGG
*
5156825 TTTGGGGGTTGGTGG
1 TTTGGGGTTTGG-GG
* *
5156840 GTTGGGGGTTGGGG
1 TTTGGGGTTTGGGG
* * *
5156854 GTTGGGTTTTTAGGG
1 TTTGGG-GTTTGGGG
* *
5156869 TTTAGGGTTTAGGG
1 TTTGGGGTTTGGGG
* **
5156883 TTTAGGGTTAAGGG
1 TTTGGGGTTTGGGG
5156897 TTT-GGGTATT-GGG
1 TTTGGGGT-TTGGGG
*
5156910 -TTGGGGTTT-CGG
1 TTTGGGGTTTGGGG
* *
5156922 TTTAGGGTTTAGGG
1 TTTGGGGTTTGGGG
* *
5156936 TTTAGGGTTTTCGGG
1 TTT-GGGGTTTGGGG
5156951 TTTCGGGGTTCT--GG
1 TTT-GGGGTT-TGGGG
*
5156965 TTTAGGG-TTGCAGGG
1 TTTGGGGTTTG--GGG
* *
5156980 TTTAGGGTTTACGGG
1 TTTGGGGTTT-GGGG
* *
5156995 TTTCGGGTTTTAGGG
1 TTT-GGGGTTTGGGG
*
5157010 TTTCGGGGTTT--CG
1 TTT-GGGGTTTGGGG
* *
5157023 TTTCGGGTTTCGGGT
1 TTTGGGGTTT-GGGG
** **
5157038 TTTCTGGTTT-CTG
1 TTTGGGGTTTGGGG
* *
5157051 TTTCGGGTTTAGGGA
1 TTTGGGGTTT-GGGG
*
5157066 TTTCAGGGGTTTCGGG
1 TTT--GGGGTTTGGGG
* *
5157082 TTTCGAGGTTTTATCGGG
1 TTT-G-GG-GTT-TGGGG
* *
5157100 TTGTCGGGTTTCGGGT
1 TT-TGGGGTTT-GGGG
* *
5157116 TTTCGGGTTTCGGG
1 TTTGGGGTTTGGGG
5157130 TTT--GG-TTGGGG
1 TTTGGGGTTTGGGG
* *
5157141 TTTTTCGGGTTTCGGG
1 --TTTGGGGTTTGGGG
* *
5157157 TTTCGGG-TTCGGG
1 TTTGGGGTTTGGGG
* *
5157170 TTTCGGGTTTCGGG
1 TTTGGGGTTTGGGG
* *
5157184 TTTAGGGTTTTCGGG
1 TTT-GGGGTTTGGGG
* * *
5157199 TTTCGGGTTCGAGG
1 TTTGGGGTTTGGGG
*
5157213 TTTGTCGAGGTTTCGGG
1 TTTG--G-GGTTTGGGG
* *
5157230 TTTCGGGTTTCGGG
1 TTTGGGGTTTGGGG
5157244 TTTGGGAGTTTGGGG
1 TTTGGG-GTTTGGGG
5157259 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
5157273 TTT-GGG-TTGGGG
1 TTTGGGGTTTGGGG
5157285 TTTGGAGGTTTGGGG
1 TTTGG-GGTTTGGGG
5157300 TTTGGGGTTTTGGGG
1 TTTGGGG-TTTGGGG
**
5157315 TGTTGGGGGGT-GGG
1 T-TTGGGGTTTGGGG
5157329 --TGGGGTTTGGAGG
1 TTTGGGGTTTGG-GG
5157342 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
5157356 TTTGGGGTTATGGGGG
1 TTTGGGGTT-T-GGGG
*
5157372 ATTTTGGGTTCTGGGG
1 -TTTGGGGTT-TGGGG
5157388 TTTGGGGTATTTTGGGG
1 TTTGGGG---TTTGGGG
5157405 TTTGGGGTTTGGGAGG
1 TTTGGGGTTT-GG-GG
*
5157421 TTTGGGG--TGTGG
1 TTTGGGGTTTGGGG
5157433 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
5157447 TATTCGGGGTATTTTGGGG
1 T-TT-GGGG---TTTGGGG
5157466 TTATGGGGTTTGGGG
1 TT-TGGGGTTTGGGG
5157481 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
*
5157495 TTTTGGGCTTTGGGG
1 -TTTGGGGTTTGGGG
5157510 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
*
5157524 TTTCGGG-TT-GGG
1 TTTGGGGTTTGGGG
*
5157536 TTTGGGGTTAGGGGG
1 TTTGGGGTT-TGGGG
* **
5157551 TTCGGGGTTACGGG
1 TTTGGGGTTTGGGG
5157565 TATTGGGGTTTGGGG
1 T-TTGGGGTTTGGGG
5157580 CTTTGGGGATTTTGGGAG
1 -TTTGGGG--TTTGGG-G
5157598 TTTGGGGTTTGAGGG
1 TTTGGGGTTTG-GGG
5157613 TTATGGGGTTTGGGG
1 TT-TGGGGTTTGGGG
*
5157628 TTTGGGGTGTGGGG
1 TTTGGGGTTTGGGG
*
5157642 TTTTTTGGGTTTGGGG
1 --TTTGGGGTTTGGGG
5157658 TTTGGGGGTTATGGGG
1 TTT-GGGGTT-TGGGG
*
5157674 TTTGGGGTATGGGCG
1 TTTGGGGTTTGGG-G
5157689 TTTGGGGTTTAGGAGG
1 TTTGGGGTTT-GG-GG
*
5157705 TGTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
5157719 TTTGGGGCATTTGGGG
1 TTTGGGG--TTTGGGG
5157735 TTTGGGGTTT-GGG
1 TTTGGGGTTTGGGG
5157748 -TTGGGGTATTGGGG
1 TTTGGGGT-TTGGGG
5157762 TTTGGAGGTTTGGGAG
1 TTTGG-GGTTTGGG-G
*
5157778 TTTGGGAGTTTGGAG
1 TTTGGG-GTTTGGGG
5157793 TTTGCGGGTTTGGCAGG
1 TTTG-GGGTTTGG--GG
5157810 TTTGAGGGTTTAGAGGGTAG
1 TTTG-GGGTTT---GGG--G
5157830 TTTGGGGTTTAGGGG
1 TTTGGGGTTT-GGGG
* *
5157845 TGTGGGGTTTTGCGTG
1 TTTGGGG-TTTG-GGG
5157861 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
5157875 TTTGGGGTATTGGGGG
1 TTTGGGGT-TT-GGGG
5157891 TTTTGGGGCTTCTGGGCG
1 -TTTGGGG-TT-TGGG-G
5157909 TGTATGGGGGGTTATGAGCGG
1 T-T-T--GGGGTT-TG-G-GG
*
5157930 AACTTAGGGGTTTTAGGGG
1 ---TTTGGGG-TTT-GGGG
5157949 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
5157963 -TTGGGGTTTTGGGCG
1 TTTGGGG-TTTGGG-G
5157978 TTTGGGGTTTGTGGG
1 TTTGGGGTTTG-GGG
5157993 TTTGGGGTTTGGGG
1 TTTGGGGTTTGGGG
*
5158007 TTTTGGGTTT-GGG
1 TTTGGGGTTTGGGG
5158020 TTTGGGGTTTAGGGG
1 TTTGGGGTTT-GGGG
* *
5158035 GTTGGGGGTTGGGG
1 TTTGGGGTTTGGGG
*
5158049 TTTGGGGTTTGCGG
1 TTTGGGGTTTGGGG
5158063 TTTGGGGTTATGGGG
1 TTTGGGGTT-TGGGG
5158078 TTTGGGAGTATTGGGG
1 TTTGGG-GT-TTGGGG
5158094 TTTGCGGGTTTGGGG
1 TTTG-GGGTTTGGGG
*
5158109 TTTTGGGTCTTCGGGG
1 TTTGGGGT-TT-GGGG
5158125 TTT
1 TTT
5158128 TTCCCGGGCT
Statistics
Matches: 1087, Mismatches: 117, Indels: 260
0.74 0.08 0.18
Matches are distributed among these distances:
11 12 0.01
12 50 0.05
13 84 0.08
14 260 0.24
15 337 0.31
16 179 0.16
17 97 0.09
18 20 0.02
19 19 0.02
20 17 0.02
21 9 0.01
22 1 0.00
23 1 0.00
24 1 0.00
ACGTcount: A:0.05, C:0.04, G:0.50, T:0.41
Consensus pattern (14 bp):
TTTGGGGTTTGGGG
Found at i:5160019 original size:9 final size:9
Alignment explanation
Indices: 5159970--5160019 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
5159960 ACGGGTTTCT
*
5159970 GGTTTTCCG
1 GGTTTTCGG
5159979 GGTTTCTCGG
1 GGTTT-TCGG
*
5159989 GGTTATCGG
1 GGTTTTCGG
* *
5159998 GGTTTCCGA
1 GGTTTTCGG
5160007 GGTTTTCGG
1 GGTTTTCGG
5160016 GGTT
1 GGTT
5160020 CGGGTTTCGG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
9 26 0.79
10 7 0.21
ACGTcount: A:0.04, C:0.16, G:0.40, T:0.40
Consensus pattern (9 bp):
GGTTTTCGG
Found at i:5161658 original size:6 final size:7
Alignment explanation
Indices: 5156866--5167778 Score: 4900
Period size: 7 Copynumber: 1434.0 Consensus size: 7
5156856 TGGGTTTTTA
*
5156866 GGGTTTA
1 GGGTTTC
*
5156873 GGGTTTA
1 GGGTTTC
*
5156880 GGGTTTA
1 GGGTTTC
**
5156887 GGGTTAA
1 GGGTTTC
5156894 GGGTTT-
1 GGGTTTC
5156900 GGGTATT-
1 GGGT-TTC
*
5156907 GGG-TTG
1 GGGTTTC
5156913 GGGTTTC
1 GGGTTTC
*
5156920 -GGTTTA
1 GGGTTTC
*
5156926 GGGTTTA
1 GGGTTTC
*
5156933 GGGTTTA
1 GGGTTTC
5156940 GGGTTTTC
1 GGG-TTTC
5156948 GGGTTTC
1 GGGTTTC
*
5156955 GGGGTTC
1 GGGTTTC
* *
5156962 TGGTTTA
1 GGGTTTC
*
5156969 GGGTTGC
1 GGGTTTC
*
5156976 AGGGTTTA
1 -GGGTTTC
5156984 GGGTTTAC
1 GGGTTT-C
5156992 GGGTTTC
1 GGGTTTC
*
5156999 GGGTTTTA
1 GGG-TTTC
5157007 GGGTTTC
1 GGGTTTC
5157014 GGGGTTTC
1 -GGGTTTC
5157022 --GTTTC
1 GGGTTTC
5157027 GGGTTTC
1 GGGTTTC
5157034 GGGTTTTC
1 GGG-TTTC
*
5157042 TGGTTTC
1 GGGTTTC
*
5157049 -TGTTTC
1 GGGTTTC
*
5157055 GGGTTTA
1 GGGTTTC
5157062 GGGATTTC
1 GGG-TTTC
5157070 AGGGGTTTC
1 --GGGTTTC
5157079 GGGTTTC
1 GGGTTTC
5157086 GAGGTTTTATC
1 G-GG--TT-TC
5157097 GGGTTGTC
1 GGGTT-TC
5157105 GGGTTTC
1 GGGTTTC
5157112 GGGTTTTC
1 GGG-TTTC
5157120 GGGTTTC
1 GGGTTTC
5157127 GGGTTT-
1 GGGTTTC
*
5157133 -GG-TTG
1 GGGTTTC
5157138 GGGTTTTTC
1 GGG--TTTC
5157147 GGGTTTC
1 GGGTTTC
5157154 GGGTTTC
1 GGGTTTC
5157161 GGG-TTC
1 GGGTTTC
5157167 GGGTTTC
1 GGGTTTC
5157174 GGGTTTC
1 GGGTTTC
*
5157181 GGGTTTA
1 GGGTTTC
5157188 GGGTTTTC
1 GGG-TTTC
5157196 GGGTTTC
1 GGGTTTC
5157203 GGG-TTC
1 GGGTTTC
5157209 GAGGTTTGTC
1 G-GG-TT-TC
5157219 GAGGTTTC
1 G-GGTTTC
5157227 GGGTTTC
1 GGGTTTC
5157234 GGGTTTC
1 GGGTTTC
*
5157241 GGGTTTG
1 GGGTTTC
*
5157248 GGAGTTTG
1 GG-GTTTC
*
5157256 GGGTTTG
1 GGGTTTC
*
5157263 GGGTTTG
1 GGGTTTC
5157270 GGGTTT-
1 GGGTTTC
*
5157276 GGG-TTG
1 GGGTTTC
*
5157282 GGGTTTG
1 GGGTTTC
*
5157289 GAGGTTTG
1 G-GGTTTC
*
5157297 GGGTTTG
1 GGGTTTC
*
5157304 GGGTTTTG
1 GGG-TTTC
*
5157312 GGGTGTTG
1 GGGT-TTC
**
5157320 GGGGGT-
1 GGGTTTC
*
5157326 GGG--TG
1 GGGTTTC
*
5157331 GGGTTTG
1 GGGTTTC
*
5157338 GAGGTTTG
1 G-GGTTTC
*
5157346 GGGTTTG
1 GGGTTTC
*
5157353 GGGTTTG
1 GGGTTTC
*
5157360 GGGTTATGG
1 GGGTT-T-C
*
5157369 GGGATTTT
1 GGG-TTTC
*
5157377 GGGTTCTG
1 GGGTT-TC
*
5157385 GGGTTTG
1 GGGTTTC
*
5157392 GGGTATTTTG
1 GGG---TTTC
*
5157402 GGGTTTG
1 GGGTTTC
*
5157409 GGGTTTGG
1 GGGTTT-C
*
5157417 GAGGTTTG
1 G-GGTTTC
*
5157425 GGGTGT-
1 GGGTTTC
*
5157431 -GGTTTG
1 GGGTTTC
*
5157437 GGGTTTG
1 GGGTTTC
5157444 GGGTATTC
1 GGGT-TTC
*
5157452 GGGGTATTTTG
1 -GGG---TTTC
*
5157463 GGGTTATG
1 GGGTT-TC
*
5157471 GGGTTTG
1 GGGTTTC
*
5157478 GGGTTTG
1 GGGTTTC
*
5157485 GGGTTTG
1 GGGTTTC
*
5157492 GGGTTTT
1 GGGTTTC
*
5157499 GGGCTTTG
1 GGG-TTTC
*
5157507 GGGTTTG
1 GGGTTTC
*
5157514 GGGTTTG
1 GGGTTTC
5157521 GGGTTTC
1 GGGTTTC
5157528 GGG-TT-
1 GGGTTTC
*
5157533 GGGTTTG
1 GGGTTTC
**
5157540 GGGTTAG
1 GGGTTTC
*
5157547 GGGGTTC
1 GGGTTTC
*
5157554 GGGGTTAC
1 -GGGTTTC
*
5157562 GGGTATTG
1 GGGT-TTC
*
5157570 GGGTTTG
1 GGGTTTC
*
5157577 GGGCTTTG
1 GGG-TTTC
*
5157585 GGGATTTTG
1 GGG--TTTC
*
5157594 GGAGTTTG
1 GG-GTTTC
*
5157602 GGGTTTGA
1 GGGTTT-C
*
5157610 GGGTTATG
1 GGGTT-TC
*
5157618 GGGTTTG
1 GGGTTTC
*
5157625 GGGTTTG
1 GGGTTTC
* *
5157632 GGGTGTG
1 GGGTTTC
*
5157639 GGGTTTTTT
1 GGG--TTTC
*
5157648 GGGTTTG
1 GGGTTTC
*
5157655 GGGTTTGG
1 GGGTTT-C
*
5157663 GGGTTATG
1 GGGTT-TC
*
5157671 GGGTTTG
1 GGGTTTC
* *
5157678 GGGTATG
1 GGGTTTC
*
5157685 GGCGTTTG
1 GG-GTTTC
*
5157693 GGGTTTAG
1 GGGTTT-C
* *
5157701 GAGGTGTG
1 G-GGTTTC
*
5157709 GGGTTTG
1 GGGTTTC
*
5157716 GGGTTTG
1 GGGTTTC
*
5157723 GGGCATTTG
1 GGG--TTTC
*
5157732 GGGTTTG
1 GGGTTTC
5157739 GGGTTT-
1 GGGTTTC
*
5157745 GGG-TTG
1 GGGTTTC
*
5157751 GGGTATTG
1 GGGT-TTC
*
5157759 GGGTTTG
1 GGGTTTC
*
5157766 GAGGTTTG
1 G-GGTTTC
*
5157774 GGAGTTTG
1 GG-GTTTC
5157782 GGAGTTT-
1 GG-GTTTC
5157789 GGAGTTTGC
1 GG-GTTT-C
5157798 GGGTTTGGC
1 GGGTTT--C
* *
5157807 AGGTTTGA
1 GGGTTT-C
*
5157815 GGGTTTAGAG
1 GGGTTT---C
*
5157825 GGTAGTTTG
1 GG--GTTTC
*
5157834 GGGTTTAG
1 GGGTTT-C
* *
5157842 GGGTGTG
1 GGGTTTC
5157849 GGGTTTTGC
1 GGG-TTT-C
* *
5157858 GTGTTTG
1 GGGTTTC
*
5157865 GGGTTTG
1 GGGTTTC
*
5157872 GGGTTTG
1 GGGTTTC
*
5157879 GGGTATTGG
1 GGGT-TT-C
*
5157888 GGGTTTTG
1 GGG-TTTC
*
5157896 GGGCTTCTG
1 GGG-TT-TC
*
5157905 GGCGTGTATGGG
1 GG-GT-T-T--C
5157917 GGGTTATGAGC
1 GGGTT-T---C
* **
5157928 GGAACTTAG
1 GG--GTTTC
*
5157937 GGGTTTTAG
1 GGG-TTT-C
*
5157946 GGGTTTG
1 GGGTTTC
5157953 GGGTTT-
1 GGGTTTC
* *
5157959 GGGGTTG
1 GGGTTTC
*
5157966 GGGTTTTG
1 GGG-TTTC
*
5157974 GGCGTTTG
1 GG-GTTTC
*
5157982 GGGTTTGT
1 GGGTTT-C
*
5157990 GGGTTTG
1 GGGTTTC
*
5157997 GGGTTTG
1 GGGTTTC
*
5158004 GGGTTTT
1 GGGTTTC
5158011 GGGTTT-
1 GGGTTTC
*
5158017 GGGTTTG
1 GGGTTTC
*
5158024 GGGTTTAG
1 GGGTTT-C
* *
5158032 GGGGTTG
1 GGGTTTC
* *
5158039 GGGGTTG
1 GGGTTTC
*
5158046 GGGTTTG
1 GGGTTTC
5158053 GGGTTT-
1 GGGTTTC
*
5158059 GCGGTTTG
1 G-GGTTTC
*
5158067 GGGTTATG
1 GGGTT-TC
*
5158075 GGGTTTG
1 GGGTTTC
*
5158082 GGAGTATTG
1 GG-GT-TTC
5158091 GGGTTTGC
1 GGGTTT-C
*
5158099 GGGTTTG
1 GGGTTTC
*
5158106 GGGTTTT
1 GGGTTTC
5158113 GGGTCTTC
1 GGGT-TTC
5158121 GGGGTTTTTCCC
1 -GGG--TTT--C
5158133 GGGCTTTC
1 GGG-TTTC
5158141 GCGGTATGTTC
1 G-GG--T-TTC
5158152 AGGGCTAATTC
1 -GGG-T--TTC
5158163 GGGTTTC
1 GGGTTTC
*
5158170 GGGGTTC
1 GGGTTTC
5158177 GGGTTTC
1 GGGTTTC
5158184 GGGTTTCC
1 GGGTTT-C
5158192 GGGTTTTC
1 GGG-TTTC
5158200 GGGTTTCC
1 GGGTTT-C
5158208 GGGTATTAC
1 GGGT-TT-C
5158217 GAGAG-TTC
1 G-G-GTTTC
5158225 GGGTTTC
1 GGGTTTC
5158232 GGGCTCTTC
1 GGG-T-TTC
5158241 GGGTTTC
1 GGGTTTC
*
5158248 GGGATTGCC
1 GGG-TT-TC
5158257 GGGTTTC
1 GGGTTTC
5158264 GGGTTTC
1 GGGTTTC
5158271 GGGTTTC
1 GGGTTTC
5158278 GGAGTTTCCC
1 GG-GTTT--C
5158288 GGGTTTC
1 GGGTTTC
*
5158295 GGGGTTC
1 GGGTTTC
*
5158302 GGTTTTCC
1 GGGTTT-C
5158310 GGGTTTC
1 GGGTTTC
5158317 AGCGGTTTC
1 -G-GGTTTC
*
5158326 GGGTTGC
1 GGGTTTC
*
5158333 GAGGTTCC
1 G-GGTTTC
5158341 GGGTATTAAAAC
1 GGGT-TT----C
5158353 GGGTTTC
1 GGGTTTC
5158360 GAGGTTTC
1 G-GGTTTC
*
5158368 AGGGGTTC
1 -GGGTTTC
5158376 GAGGTTTTC
1 G-GG-TTTC
5158385 GGGTTTC
1 GGGTTTC
*
5158392 GAGTTTC
1 GGGTTTC
5158399 GGGGTTTC
1 -GGGTTTC
5158407 GGGTTTC
1 GGGTTTC
5158414 GGGTTTC
1 GGGTTTC
5158421 GGGTTTC
1 GGGTTTC
5158428 GGGTTTC
1 GGGTTTC
5158435 GGGTTTC
1 GGGTTTC
5158442 GGGTTTCGC
1 GGGTTT--C
5158451 GAGGTATTAC
1 G-GGT-TT-C
5158461 AGGGTTGTC
1 -GGGTT-TC
5158470 GGGTTTCC
1 GGGTTT-C
5158478 GAGGTTTCC
1 G-GGTTT-C
*
5158487 GGATTTC
1 GGGTTTC
*
5158494 GGTTTTTC
1 GG-GTTTC
*
5158502 GGGTTTTTTA
1 GGG---TTTC
**
5158512 GAATATTTACC
1 G--GGTTT--C
5158523 GAACGGATATTAAC
1 G---GG-T-TT--C
*
5158537 GGGTATCAC
1 GGGT-T-TC
5158546 GGGTTATC
1 GGGTT-TC
5158554 AGGGTTTC
1 -GGGTTTC
5158562 GGGTTTC
1 GGGTTTC
5158569 -GGTTTC
1 GGGTTTC
5158575 GGGTTTC
1 GGGTTTC
5158582 GGGTTTC
1 GGGTTTC
5158589 GGG-TTC
1 GGGTTTC
5158595 GGGTTATC
1 GGGTT-TC
5158603 -GGTTTC
1 GGGTTTC
5158609 GGGTTTC
1 GGGTTTC
5158616 GGGTATTC
1 GGGT-TTC
5158624 GGGTTTCCC
1 GGGTTT--C
*
5158633 GAGATTATTTC
1 G-G---GTTTC
*
5158644 AGGTATTTC
1 -GG-GTTTC
5158653 GGGTTTC
1 GGGTTTC
*
5158660 GGGTTAC
1 GGGTTTC
5158667 GGGTTTTC
1 GGG-TTTC
5158675 GGGTTATC
1 GGGTT-TC
5158683 GGAGTTTC
1 GG-GTTTC
5158691 GGGTTTC
1 GGGTTTC
5158698 GGGATTTTC
1 GGG--TTTC
*
5158707 GGGTTGC
1 GGGTTTC
5158714 GGTGTTCTC
1 GG-GTT-TC
5158723 GGGTTTC
1 GGGTTTC
5158730 -GGTTTC
1 GGGTTTC
*
5158736 GGGTGTTA
1 GGGT-TTC
5158744 GGGTATTC
1 GGGT-TTC
5158752 GGGTTTC
1 GGGTTTC
5158759 GGGTTTC
1 GGGTTTC
5158766 GGGATTTCGC
1 GGG-TTT--C
5158776 GGGTATAAT-
1 GGGT-T--TC
5158785 GCGG-TTC
1 G-GGTTTC
5158792 -GGTTTC
1 GGGTTTC
5158798 GGGTATTC
1 GGGT-TTC
5158806 GGGGTTTC
1 -GGGTTTC
5158814 GGGGTTTAC
1 -GGGTTT-C
5158823 GGAGTTTTTC
1 GG-G--TTTC
5158833 GGGTTTC
1 GGGTTTC
*
5158840 GGGGTTC
1 GGGTTTC
5158847 GAGAGTTTC
1 G-G-GTTTC
5158856 GGGTTTC
1 GGGTTTC
5158863 GGAGTATTC
1 GG-GT-TTC
5158872 TGGG-TTC
1 -GGGTTTC
*
5158879 GGATTTCC
1 GGGTTT-C
5158887 GGGTTTCC
1 GGGTTT-C
5158895 GGGTTTC
1 GGGTTTC
5158902 GGGTTTC
1 GGGTTTC
5158909 -GGTTTC
1 GGGTTTC
5158915 GGGTTTC
1 GGGTTTC
5158922 GGGTTTC
1 GGGTTTC
*
5158929 GGGTTGCC
1 GGGTT-TC
5158937 GGGTTTTTC
1 GGG--TTTC
5158946 -GGTTTC
1 GGGTTTC
5158952 GGGTTTC
1 GGGTTTC
*
5158959 GGTTTTC
1 GGGTTTC
5158966 -GGTTTC
1 GGGTTTC
5158972 GGGTTTTAC
1 GGG-TTT-C
5158981 -GGTTTC
1 GGGTTTC
5158987 AGGG-TTC
1 -GGGTTTC
5158994 GGGTTTCC
1 GGGTTT-C
5159002 GGGTTTC
1 GGGTTTC
5159009 GGGATTTC
1 GGG-TTTC
5159017 GGGTTTC
1 GGGTTTC
5159024 GGGTTTC
1 GGGTTTC
5159031 GGGTTTC
1 GGGTTTC
5159038 GGAGTTTAC
1 GG-GTTT-C
5159047 GGGTTTC
1 GGGTTTC
5159054 GGAGTTTCC
1 GG-GTTT-C
5159063 GGGTTTAC
1 GGGTTT-C
5159071 GGGTTTC
1 GGGTTTC
*
5159078 CGGTTTC
1 GGGTTTC
*
5159085 GGTTTTC
1 GGGTTTC
5159092 -GGTTT-
1 GGGTTTC
5159097 GAAGGTTTC
1 G--GGTTTC
5159106 GGGTTT-
1 GGGTTTC
5159112 -GGTTATC
1 GGGTT-TC
5159119 AGGGTTTGC
1 -GGGTTT-C
5159128 GGG-TTC
1 GGGTTTC
5159134 GGAGTTTC
1 GG-GTTTC
5159142 GGGTTTCCGC
1 GGGTTT---C
5159152 GGGGTTTC
1 -GGGTTTC
5159160 GGGTTTC
1 GGGTTTC
5159167 GGGTTATC
1 GGGTT-TC
5159175 GGGTTTC
1 GGGTTTC
*
5159182 GGGGGTTTG
1 --GGGTTTC
*
5159191 GGGTTTGTTG
1 GGG--T-TTC
5159201 GGGTTT-
1 GGGTTTC
*
5159207 GGGTTTG
1 GGGTTTC
*
5159214 GGGTTTGA
1 GGGTTT-C
5159222 GGGTTTCC
1 GGGTTT-C
*
5159230 ATGGGAGTATC
1 ---GG-GTTTC
*
5159241 GGGGGTATC
1 --GGGTTTC
*
5159250 GGGTATCC
1 GGGT-TTC
*
5159258 GGGGTTC
1 GGGTTTC
* *
5159265 TGAGTTAC
1 -GGGTTTC
*
5159273 GAGGGGTTCC
1 ---GGGTTTC
*
5159283 GGGAGATATC
1 -GG-G-TTTC
5159293 TGGG-TTC
1 -GGGTTTC
5159300 GGGTTTC
1 GGGTTTC
5159307 GGGTATTC
1 GGGT-TTC
*
5159315 GGGGGGTT-
1 --GGGTTTC
5159323 GAGGTTTC
1 G-GGTTTC
5159331 GGGTTTC
1 GGGTTTC
*
5159338 GGGTGTC
1 GGGTTTC
5159345 GGGTTATC
1 GGGTT-TC
5159353 GGGTTTTTC
1 GGG--TTTC
5159362 GGGGTTTC
1 -GGGTTTC
5159370 GGGTTTC
1 GGGTTTC
*
5159377 GGGGTTC
1 GGGTTTC
*
5159384 GGGTTGC
1 GGGTTTC
5159391 GGGTTTC
1 GGGTTTC
5159398 GGGTTTC
1 GGGTTTC
5159405 GGGTTTC
1 GGGTTTC
5159412 GGGTTTC
1 GGGTTTC
5159419 GGGTTTC
1 GGGTTTC
5159426 GGGTTTC
1 GGGTTTC
5159433 GGGTTTC
1 GGGTTTC
5159440 GGGTATTC
1 GGGT-TTC
*
5159448 GGATTTTCC
1 GG-GTTT-C
*
5159457 GGGATGTCC
1 GGG-T-TTC
*
5159466 GGCATTTC
1 GG-GTTTC
5159474 GGGTTCTC
1 GGGTT-TC
5159482 GGGATTTATC
1 GGG--TT-TC
5159492 GGGTTTC
1 GGGTTTC
*
5159499 GGGTTGC
1 GGGTTTC
*
5159506 GGGTTGC
1 GGGTTTC
5159513 GGGTATTTC
1 GGG--TTTC
5159522 GGGTTTC
1 GGGTTTC
* *
5159529 CGGTTGC
1 GGGTTTC
5159536 GGGTTTC
1 GGGTTTC
*
5159543 GGATTGTTC
1 GG-GT-TTC
5159552 GGGTATTC
1 GGGT-TTC
5159560 GGGGTTTC
1 -GGGTTTC
5159568 GGAG-TTC
1 GG-GTTTC
*
5159575 GGGGTTC
1 GGGTTTC
5159582 GGGTTTC
1 GGGTTTC
5159589 GGGTTT-
1 GGGTTTC
*
5159595 AGGTTTCCCCCC
1 GGGTTT-----C
******
5159607 ACCCCGC
1 GGGTTTC
5159614 GGGTTTCAC
1 GGGTTT--C
5159623 GGG-TTC
1 GGGTTTC
5159629 GGGTGTTAC
1 GGGT-TT-C
*
5159638 TGAG-TTC
1 -GGGTTTC
**
5159645 TGTATTTC
1 -GGGTTTC
5159653 GGGTTTC
1 GGGTTTC
5159660 AGGGTTTC
1 -GGGTTTC
*
5159668 GGG-TGC
1 GGGTTTC
*
5159674 GGGATAAATGC
1 GGG-T---TTC
5159685 GGGTTTC
1 GGGTTTC
5159692 -GGTTGTC
1 GGGTT-TC
5159699 GGGTGTTC
1 GGGT-TTC
5159707 GGGTTTC
1 GGGTTTC
5159714 GGGTTTC
1 GGGTTTC
*
5159721 GTGTTTC
1 GGGTTTC
5159728 GGGGTATTC
1 -GGGT-TTC
5159737 -GG-TTC
1 GGGTTTC
5159742 GGGTGTTC
1 GGGT-TTC
5159750 AGGGTTTC
1 -GGGTTTC
5159758 GGGTGTTCC
1 GGGT-TT-C
5159767 GGGTTTCC
1 GGGTTT-C
5159775 GGGTTTTC
1 GGG-TTTC
5159783 GGG-TTC
1 GGGTTTC
5159789 GGGGTTTC
1 -GGGTTTC
*
5159797 GGGGTTC
1 GGGTTTC
5159804 GGGTTATCC
1 GGGTT-T-C
5159813 GGCGTTTC
1 GG-GTTTC
5159821 GGGTATTC
1 GGGT-TTC
5159829 GGAGTTATGC
1 GG-GTT-T-C
*
5159839 TGGTTATC
1 GGGTT-TC
*
5159847 GTGTTTC
1 GGGTTTC
5159854 -GG-TTC
1 GGGTTTC
5159859 GGGTTTC
1 GGGTTTC
5159866 GGGTATTC
1 GGGT-TTC
*
5159874 GGTTTTC
1 GGGTTTC
5159881 GGGGTTATC
1 -GGGTT-TC
5159890 -GGTTTC
1 GGGTTTC
*
5159896 GGGGTT-
1 GGGTTTC
5159902 GGGTTTC
1 GGGTTTC
5159909 GAGAGTTATC
1 G-G-GTT-TC
*
5159919 GGGTTTA
1 GGGTTTC
5159926 GGGTTTC
1 GGGTTTC
5159933 GGGTTTCC
1 GGGTTT-C
*
5159941 GGGTGTC
1 GGGTTTC
5159948 GGG-TTC
1 GGGTTTC
* *
5159954 GTTGTTAC
1 G-GGTTTC
5159962 GGGTTTC
1 GGGTTTC
*
5159969 TGGTTTTCC
1 -GGGTTT-C
5159978 GGGTTTCTC
1 GGG-TT-TC
5159987 GGGGTTATC
1 -GGGTT-TC
5159996 GGGGTTTCC
1 -GGGTTT-C
5160005 GAGGTTTTC
1 G-GG-TTTC
*
5160014 GGGGTTC
1 GGGTTTC
5160021 GGGTTTC
1 GGGTTTC
5160028 GGGTTTC
1 GGGTTTC
5160035 GGG-TTC
1 GGGTTTC
5160041 GGGTTTC
1 GGGTTTC
5160048 GGGTTTC
1 GGGTTTC
5160055 AGGGTATTCC
1 -GGGT-TT-C
5160065 GGGTTT-
1 GGGTTTC
*
5160071 --TTTTC
1 GGGTTTC
5160076 GGGTTTTC
1 GGG-TTTC
5160084 GGCGTATTTC
1 GG-G--TTTC
5160094 GGG-TTC
1 GGGTTTC
5160100 GGGTTTCC
1 GGGTTT-C
5160108 GGGTTTC
1 GGGTTTC
5160115 GGGTATTTC
1 GGG--TTTC
5160124 GGGTTTC
1 GGGTTTC
5160131 GGGTTTC
1 GGGTTTC
5160138 GGGTTTC
1 GGGTTTC
5160145 GGGTTTC
1 GGGTTTC
5160152 GGCGTATTC
1 GG-GT-TTC
5160161 GGGGTTTTC
1 -GGG-TTTC
5160170 GGGTTTC
1 GGGTTTC
5160177 GAGGATATATC
1 G-GG-T-T-TC
*
5160188 GCCGGTTCC
1 G--GGTTTC
5160197 GGGGATTTC
1 -GGG-TTTC
5160206 GGGTTCTC
1 GGGTT-TC
5160214 GGG-TTC
1 GGGTTTC
5160220 AGGG--TC
1 -GGGTTTC
5160226 GGGTTATC
1 GGGTT-TC
5160234 TGGTGTATTC
1 -GG-GT-TTC
5160244 GGGTTTC
1 GGGTTTC
*
5160251 ATGGTTTCC
1 -GGGTTT-C
5160260 GGG-TTC
1 GGGTTTC
5160266 GGGTTTC
1 GGGTTTC
5160273 GGGTTTTC
1 GGG-TTTC
5160281 -GGTTTC
1 GGGTTTC
*
5160287 AGAGTTT-
1 -GGGTTTC
5160294 GGGTTTC
1 GGGTTTC
5160301 GGGTTTC
1 GGGTTTC
5160308 -GGTTTC
1 GGGTTTC
5160314 GGTGGTTT-
1 -G-GGTTTC
5160322 -GGTTTC
1 GGGTTTC
5160328 GGTTGGTTTC
1 -G--GGTTTC
5160338 GGG-TTC
1 GGGTTTC
5160344 GGGTTTC
1 GGGTTTC
5160351 GGGTTTC
1 GGGTTTC
5160358 GGGTTTC
1 GGGTTTC
*
5160365 GGGTTAC
1 GGGTTTC
*
5160372 TGGTTTC
1 GGGTTTC
*
5160379 GGGTTGC
1 GGGTTTC
5160386 GGGTTTTC
1 GGG-TTTC
5160394 GGGTTTC
1 GGGTTTC
5160401 GGGTTTC
1 GGGTTTC
*
5160408 GTGTTTACC
1 GGGTTT--C
5160417 GGG-TTC
1 GGGTTTC
5160423 GGGTTTCC
1 GGGTTT-C
5160431 GGGTTGTTTAC
1 -GG--GTTT-C
5160442 GGGGTCTGGTC
1 -GGGT-T--TC
5160453 GAGGTTTC
1 G-GGTTTC
5160461 GAGGCTTTC
1 G-GG-TTTC
5160470 GGGTTTC
1 GGGTTTC
5160477 GGGATTTC
1 GGG-TTTC
5160485 GGGTTATC
1 GGGTT-TC
5160493 GGGTTTC
1 GGGTTTC
5160500 GGGTTTC
1 GGGTTTC
5160507 GGGTTT-
1 GGGTTTC
5160513 GGAGTATTC
1 GG-GT-TTC
5160522 GAAGGTTTC
1 G--GGTTTC
5160531 GGGTTTC
1 GGGTTTC
5160538 GGGTTTC
1 GGGTTTC
5160545 GGGTTTCATC
1 GGG-TT--TC
5160555 GGGTTTC
1 GGGTTTC
5160562 -GGTTTCC
1 GGGTTT-C
5160569 GGGTTTC
1 GGGTTTC
5160576 GGG-TTC
1 GGGTTTC
5160582 GGGTTTC
1 GGGTTTC
5160589 GGGTTTTC
1 GGG-TTTC
5160597 GGGTTT-
1 GGGTTTC
5160603 GGGTTTC
1 GGGTTTC
5160610 GGGTTTC
1 GGGTTTC
*
5160617 GGGGTTC
1 GGGTTTC
5160624 GGGTTTC
1 GGGTTTC
*
5160631 GGTTTTC
1 GGGTTTC
5160638 GGGTCTATCC
1 GGGT-T-T-C
5160648 GCGGTTTC
1 G-GGTTTC
5160656 GGGTTT-
1 GGGTTTC
5160662 -GGTTTC
1 GGGTTTC
5160668 GGGTTTC
1 GGGTTTC
5160675 GGGTTTAC
1 GGGTTT-C
5160683 GGGTTTC
1 GGGTTTC
5160690 GGGTTTCC
1 GGGTTT-C
5160698 GGG-TTC
1 GGGTTTC
5160704 GGGTTTTTC
1 GGG--TTTC
*
5160713 GGGGTTC
1 GGGTTTC
5160720 GGGATTTC
1 GGG-TTTC
5160728 GGAGTTTC
1 GG-GTTTC
5160736 GGGTTTC
1 GGGTTTC
*
5160743 GGGTTGAC
1 GGGTT-TC
5160751 GGAGTTTC
1 GG-GTTTC
5160759 GGGTTT-
1 GGGTTTC
*
5160765 --ATTTC
1 GGGTTTC
5160770 GGGTTTC
1 GGGTTTC
*
5160777 GGGGTTGC
1 -GGGTTTC
5160785 GGGTTTC
1 GGGTTTC
5160792 GGGTTTC
1 GGGTTTC
5160799 GGGTTTC
1 GGGTTTC
5160806 GGGTTTC
1 GGGTTTC
5160813 GGGATTTCC
1 GGG-TTT-C
5160822 GGGTTTCTCC
1 GGG-TT-T-C
5160832 GGGTTTC
1 GGGTTTC
5160839 GGGTTTCCCAC
1 GGGTTT----C
5160850 GGGTTTC
1 GGGTTTC
5160857 -GGTTTC
1 GGGTTTC
5160863 GGGTTTCC
1 GGGTTT-C
5160871 GGAGTTTC
1 GG-GTTTC
*
5160879 -GGTGTC
1 GGGTTTC
5160885 GGGTATTC
1 GGGT-TTC
*
5160893 GGGGTTC
1 GGGTTTC
5160900 GGGTTTC
1 GGGTTTC
5160907 GGGTTTC
1 GGGTTTC
5160914 GGGTTTC
1 GGGTTTC
5160921 -GGTTTC
1 GGGTTTC
5160927 GGGTTTC
1 GGGTTTC
5160934 GGGTTTTC
1 GGG-TTTC
5160942 GGG-TTC
1 GGGTTTC
5160948 GGGTATTCC
1 GGGT-TT-C
5160957 GGGTTTC
1 GGGTTTC
5160964 GGGCTTTC
1 GGG-TTTC
5160972 GGTGTTTC
1 GG-GTTTC
5160980 AGGGTGTTTC
1 --GG-GTTTC
5160990 GGGTTATC
1 GGGTT-TC
5160998 GGGTTTC
1 GGGTTTC
5161005 GGGTATTC
1 GGGT-TTC
5161013 -GGTTTC
1 GGGTTTC
*
5161019 GGTTTTC
1 GGGTTTC
5161026 GGGTTTC
1 GGGTTTC
5161033 AGGGTTTC
1 -GGGTTTC
*
5161041 TCGGTTTC
1 -GGGTTTC
5161049 GGGTTATTC
1 GGG-T-TTC
5161058 GGGGTTTC
1 -GGGTTTC
5161066 GGGTTTC
1 GGGTTTC
*
5161073 GAGTTTC
1 GGGTTTC
5161080 GGGTTTC
1 GGGTTTC
5161087 -GGTTATC
1 GGGTT-TC
*
5161094 AGGTTTC
1 GGGTTTC
*
5161101 GGGCTTGC
1 GGG-TTTC
*
5161109 CGGTTTC
1 GGGTTTC
**
5161116 GGGGGTC
1 GGGTTTC
5161123 GGG-TTC
1 GGGTTTC
*
5161129 GGGGTTC
1 GGGTTTC
**
5161136 GGGGTTGA
1 -GGGTTTC
5161144 GGGTTTC
1 GGGTTTC
*
5161151 GAGGGTTC
1 G-GGTTTC
*
5161159 GGGGTTC
1 GGGTTTC
5161166 GGGTTCTC
1 GGGTT-TC
5161174 AGGGGTTATAC
1 --GGGTT-T-C
5161185 GGGTTTC
1 GGGTTTC
*
5161192 TGG-TTC
1 GGGTTTC
*
5161198 GGGGTTGCC
1 -GGGTT-TC
5161207 GGGTTTTC
1 GGG-TTTC
5161215 GGGTTTC
1 GGGTTTC
5161222 GGGTTTC
1 GGGTTTC
5161229 GGGTTTC
1 GGGTTTC
5161236 GGGTTTC
1 GGGTTTC
*
5161243 GGGTTGGCC
1 GGGTT--TC
5161252 GGGTTTC
1 GGGTTTC
5161259 AGGGTTTC
1 -GGGTTTC
5161267 GGGTTTC
1 GGGTTTC
5161274 GGGTTTGC
1 GGGTTT-C
*
5161282 TGGTTTC
1 GGGTTTC
**
5161289 GGGTTGAA
1 GGGTT-TC
5161297 GGGTTTTTC
1 GGG--TTTC
5161306 GGGTTTC
1 GGGTTTC
*
5161313 GGGTTGC
1 GGGTTTC
*
5161320 GTGTTTATTC
1 G-G-GT-TTC
5161330 GCGGTTTC
1 G-GGTTTC
5161338 GGAGTTTTC
1 GG-G-TTTC
*
5161347 GGG-TGC
1 GGGTTTC
5161353 GGGTTTC
1 GGGTTTC
5161360 GGG-TTC
1 GGGTTTC
5161366 GGGTTTTC
1 GGG-TTTC
5161374 GGGTTGTC
1 GGGTT-TC
*
5161382 GGG-GT-
1 GGGTTTC
5161387 GGGTTTC
1 GGGTTTC
5161394 GGGTTTC
1 GGGTTTC
5161401 GGGGATTCTC
1 -GGG-TT-TC
*
5161411 GTGTTTC
1 GGGTTTC
5161418 GGGTTTC
1 GGGTTTC
5161425 GAGGGTTTC
1 --GGGTTTC
5161434 GGGTTTC
1 GGGTTTC
5161441 GGGTTTC
1 GGGTTTC
5161448 GGGTTTC
1 GGGTTTC
5161455 GGGTTTC
1 GGGTTTC
5161462 GGGTTTTCCC
1 GGG-TTT--C
5161472 GGGTTTC
1 GGGTTTC
5161479 GGGTTTC
1 GGGTTTC
5161486 GGGTTTC
1 GGGTTTC
5161493 GGGTTTC
1 GGGTTTC
5161500 GGGTTTC
1 GGGTTTC
*
5161507 GGGTTAGC
1 GGGTT-TC
5161515 GGGTTTC
1 GGGTTTC
5161522 GGAGTTTCC
1 GG-GTTT-C
*
5161531 GGGTTCC
1 GGGTTTC
5161538 GGGTTTC
1 GGGTTTC
*
5161545 GGGTTTT
1 GGGTTTC
5161552 GGGTTTTCC
1 GGG-TTT-C
5161561 GGGTTTC
1 GGGTTTC
*
5161568 GGGTTTTA
1 GGG-TTTC
5161576 GGGTTGGTC
1 GGGTT--TC
5161585 GGGTTTCC
1 GGGTTT-C
5161593 GGGATTTC
1 GGG-TTTC
*
5161601 GGGGTTC
1 GGGTTTC
*
5161608 GGGGTTTA
1 -GGGTTTC
*
5161616 GGGTTAC
1 GGGTTTC
5161623 GGGTTTC
1 GGGTTTC
5161630 GGGTTTC
1 GGGTTTC
5161637 GGGTTTC
1 GGGTTTC
*
5161644 TGAGTTTC
1 -GGGTTTC
5161652 -GGTTTC
1 GGGTTTC
*
5161658 GGGTAGTC
1 GGGT-TTC
* *
5161666 GGGATTG
1 GGGTTTC
*
5161673 GGGTTTGG
1 GGGTTT-C
*
5161681 GGGTTTTG
1 GGG-TTTC
*
5161689 GGGTTTTGG
1 GGG-TTT-C
*
5161698 GGGTTTG
1 GGGTTTC
*
5161705 GGGTTTG
1 GGGTTTC
*
5161712 GGGTTTG
1 GGGTTTC
*
5161719 GGGTTTG
1 GGGTTTC
*
5161726 GGGTTTG
1 GGGTTTC
*
5161733 GGGTTGTG
1 GGGTT-TC
*
5161741 GGGTTTAG
1 GGGTTT-C
*
5161749 GGGTTTAG
1 GGGTTT-C
*
5161757 GGGTTTG
1 GGGTTTC
*
5161764 GGGTTTTG
1 GGG-TTTC
5161772 GGGTTT-
1 GGGTTTC
* *
5161778 -TGTTTAG
1 GGGTTT-C
5161785 GAGGTTTAC
1 G-GGTTT-C
**
5161794 GGG-GAC
1 GGGTTTC
* *
5161800 GCGTTTG
1 GGGTTTC
*
5161807 GGGTTTG
1 GGGTTTC
*
5161814 GAGGTTTGA
1 G-GGTTT-C
*
5161823 GGGTTTAG
1 GGGTTT-C
*
5161831 GGGATTTG
1 GGG-TTTC
*
5161839 GGAGTTTG
1 GG-GTTTC
**
5161847 GAGGTTGG
1 G-GGTTTC
*
5161855 GGAGATTTTTG
1 GG-G---TTTC
*
5161866 GGGTTTG
1 GGGTTTC
*
5161873 GGGTTTTG
1 GGG-TTTC
**
5161881 GGGTTGG
1 GGGTTTC
*
5161888 GGGTTTG
1 GGGTTTC
*
5161895 GGGTTTG
1 GGGTTTC
5161902 GGGTTT-
1 GGGTTTC
*
5161908 GGAGGTTC
1 GG-GTTTC
*
5161916 GGGGTTC
1 GGGTTTC
*
5161923 GGAGGTGTTG
1 -G-GGT-TTC
*
5161933 GGGGTT-
1 GGGTTTC
*
5161939 GGGTTTG
1 GGGTTTC
*
5161946 GGGATTTGG
1 GGG-TTT-C
5161955 GGGTTTC
1 GGGTTTC
5161962 GGG-TTC
1 GGGTTTC
*
5161968 GGGGTTC
1 GGGTTTC
5161975 GAGGGTTTC
1 --GGGTTTC
5161984 GGGTTTTC
1 GGG-TTTC
5161992 GGGCATTTC
1 GGG--TTTC
5162001 -GGTTTC
1 GGGTTTC
5162007 GGGTTTC
1 GGGTTTC
*
5162014 GGGGTCGTC
1 -GGGT-TTC
*
5162023 GGCGTATC
1 GG-GTTTC
5162031 GGGTTTTC
1 GGG-TTTC
*
5162039 GAGGTCGATC
1 G-GGT--TTC
5162049 GGG-TTC
1 GGGTTTC
5162055 -GGTTTC
1 GGGTTTC
5162061 GGGTTT-
1 GGGTTTC
* *
5162067 GGAGATTA
1 GG-GTTTC
5162075 GGGTTTC
1 GGGTTTC
5162082 -GGTATTC
1 GGGT-TTC
5162089 GGGTATTC
1 GGGT-TTC
5162097 -GGTTTAC
1 GGGTTT-C
*
5162104 ATGGTATTC
1 -GGGT-TTC
5162113 GGGTTTTC
1 GGG-TTTC
5162121 GGAGTCATTC
1 GG-GT--TTC
5162131 -GGTTTC
1 GGGTTTC
5162137 GGGTCTTC
1 GGGT-TTC
5162145 GGGTATTC
1 GGGT-TTC
*
5162153 GGGCTTGCCC
1 GGG-TT--TC
5162163 GGGTTTC
1 GGGTTTC
5162170 GGGTTTC
1 GGGTTTC
5162177 GGGTTTC
1 GGGTTTC
5162184 GGGTTTC
1 GGGTTTC
5162191 GGGTTTC
1 GGGTTTC
5162198 GGGTTTC
1 GGGTTTC
5162205 AGAGGTTAATC
1 -G-GGTT--TC
*
5162216 -GGTTTA
1 GGGTTTC
*
5162222 GGAGTTGAC
1 GG-GTT-TC
5162231 GGGTTTTCAC
1 GGG-TTT--C
*
5162241 GGGTTCC
1 GGGTTTC
5162248 GGGTAATTC
1 GGGT--TTC
5162257 GGGTATTC
1 GGGT-TTC
5162265 GGG-TTC
1 GGGTTTC
5162271 GGGTTTC
1 GGGTTTC
5162278 GGG-TTC
1 GGGTTTC
*
5162284 GGGTTGC
1 GGGTTTC
5162291 GGGTTT-
1 GGGTTTC
5162297 GGG-TTC
1 GGGTTTC
5162303 -GGTTTCC
1 GGGTTT-C
5162310 GAGGTTATC
1 G-GGTT-TC
*
5162319 GGATTT-
1 GGGTTTC
5162325 GGGTTTC
1 GGGTTTC
5162332 GGGATTTTTC
1 GGG---TTTC
5162342 GGGTTTC
1 GGGTTTC
*
5162349 GGGTTTAT
1 GGGTTT-C
5162357 GGGTATTC
1 GGGT-TTC
5162365 GGGTTTC
1 GGGTTTC
5162372 AGGGTTTC
1 -GGGTTTC
5162380 GGAGTTTC
1 GG-GTTTC
5162388 GGGTTTC
1 GGGTTTC
5162395 GGGGTTTC
1 -GGGTTTC
5162403 -GGTTTC
1 GGGTTTC
5162409 GGGTTTC
1 GGGTTTC
5162416 GGGTTTTC
1 GGG-TTTC
5162424 GGGTTTC
1 GGGTTTC
5162431 GGGATTTCC
1 GGG-TTT-C
5162440 GGGGGGTTTTTGC
1 ---GGG--TTT-C
*
5162453 AGGCTTTC
1 -GGGTTTC
5162461 GGGTTTC
1 GGGTTTC
5162468 GGGTTTATC
1 GGG-TT-TC
*
5162477 GGGTTGC
1 GGGTTTC
5162484 GGGTTTC
1 GGGTTTC
5162491 GGGTTTC
1 GGGTTTC
5162498 AGGGTTTC
1 -GGGTTTC
5162506 GGGTTTTC
1 GGG-TTTC
*
5162514 GAGGTTGTG
1 G-GGTT-TC
* *
5162523 GGGGTGC
1 GGGTTTC
*
5162530 GGGTTGGC
1 GGGTT-TC
5162538 GGGTTATC
1 GGGTT-TC
*
5162546 TCGGTTTC
1 -GGGTTTC
*
5162554 --CTTTC
1 GGGTTTC
5162559 -GG--TC
1 GGGTTTC
*
5162563 GGGTTTTG
1 GGG-TTTC
5162571 GGGTTTC
1 GGGTTTC
*
5162578 GGGGTTTAG
1 -GGGTTT-C
*
5162587 GGGTACTTG
1 GGGT--TTC
*
5162596 GGGTTTG
1 GGGTTTC
5162603 GGGTTT-
1 GGGTTTC
* *
5162609 GGGGTTG
1 GGGTTTC
*
5162616 GGGTTTG
1 GGGTTTC
*
5162623 GGGTGTATG
1 GGGT-T-TC
*
5162632 GCGGTTATGA
1 G-GGTT-T-C
*
5162642 GAGGTTTG
1 G-GGTTTC
*
5162650 GGGTTGGGC
1 GGGTT--TC
*
5162659 GGGTGGTTGA
1 GGGT--TT-C
*
5162669 GGGTTCTG
1 GGGTT-TC
*
5162677 GGGTTTG
1 GGGTTTC
*
5162684 GGGTTTAG
1 GGGTTT-C
*
5162692 GGGTTTTG
1 GGG-TTTC
*
5162700 GGGTTTG
1 GGGTTTC
*
5162707 GGGTTTG
1 GGGTTTC
*
5162714 GGGTTTG
1 GGGTTTC
*
5162721 GGGTTTTG
1 GGG-TTTC
*
5162729 GAGGTATTG
1 G-GGT-TTC
*
5162738 GAGGTTTG
1 G-GGTTTC
* *
5162746 GGGGTTG
1 GGGTTTC
5162753 GGGTTT-
1 GGGTTTC
*
5162759 GGGAGTTC
1 GGG-TTTC
*
5162767 GGGGGTTTG
1 --GGGTTTC
*
5162776 GGGTTTG
1 GGGTTTC
*
5162783 GGGTTTTGG
1 GGG-TTT-C
*
5162792 GGTGTTTG
1 GG-GTTTC
5162800 GCGGTTT-
1 G-GGTTTC
*
5162807 GGGTTATGG
1 GGGTT-T-C
*
5162816 GGGTTTG
1 GGGTTTC
**
5162823 GAGGTTGG
1 G-GGTTTC
*
5162831 GGGTTTT
1 GGGTTTC
*
5162838 GGGTGTTG
1 GGGT-TTC
*
5162846 GGGTTTG
1 GGGTTTC
*
5162853 GGGTGT-
1 GGGTTTC
*
5162859 GGGTTTTG
1 GGG-TTTC
5162867 GGGTTTC
1 GGGTTTC
*
5162874 GGGGTTTG
1 -GGGTTTC
5162882 GGGTTT-
1 GGGTTTC
*
5162888 GGGATTTG
1 GGG-TTTC
*
5162896 GGGTTTTGA
1 GGG-TTT-C
*
5162905 GGGTTGC
1 GGGTTTC
5162912 GGAGTTTC
1 GG-GTTTC
5162920 GGGTTTAC
1 GGGTTT-C
5162928 GGGTTTC
1 GGGTTTC
5162935 GGGTTTC
1 GGGTTTC
5162942 GGGTTTC
1 GGGTTTC
*
5162949 GGGTTAC
1 GGGTTTC
5162956 GGGTTTAC
1 GGGTTT-C
5162964 GGGTTTC
1 GGGTTTC
*
5162971 AGGTTTTC
1 -GGGTTTC
5162979 GGGTATTAC
1 GGGT-TT-C
*
5162988 CGGTTAT-
1 GGGTT-TC
5162995 GGGTCTTCCC
1 GGGT-TT--C
5163005 GGGTGCTTC
1 GGGT--TTC
5163014 GGGTTTC
1 GGGTTTC
5163021 GGGTATTC
1 GGGT-TTC
5163029 GGGTTTC
1 GGGTTTC
5163036 GGGTTTC
1 GGGTTTC
5163043 GGGTTTC
1 GGGTTTC
*
5163050 GGTTTTC
1 GGGTTTC
*
5163057 GGGTGTC
1 GGGTTTC
5163064 GGGTTTC
1 GGGTTTC
5163071 GGAGTTCTC
1 GG-GTT-TC
5163080 GGGTATATC
1 GGGT-T-TC
5163089 GGGTTTC
1 GGGTTTC
5163096 GGGGTTTC
1 -GGGTTTC
5163104 -GGTTTC
1 GGGTTTC
5163110 GGGTTTC
1 GGGTTTC
5163117 GGGTTTC
1 GGGTTTC
5163124 GGG-TTC
1 GGGTTTC
*
5163130 GGG-TTA
1 GGGTTTC
*
5163136 GGGTTGCC
1 GGGTT-TC
*
5163144 GGGTGTC
1 GGGTTTC
5163151 GGGTTTC
1 GGGTTTC
*
5163158 GGGTTGACC
1 GGGTT--TC
5163167 GGGTTTCC
1 GGGTTT-C
5163175 GGGTTTC
1 GGGTTTC
5163182 GGGTTTC
1 GGGTTTC
5163189 -GGTTTC
1 GGGTTTC
5163195 GGGTTT-
1 GGGTTTC
*
5163201 GGATTTC
1 GGGTTTC
5163208 GGGAGTTTCC
1 -GG-GTTT-C
* *
5163218 GGGGTTA
1 GGGTTTC
5163225 GGGTTTC
1 GGGTTTC
5163232 GGGTTTC
1 GGGTTTC
5163239 GGGGTTTC
1 -GGGTTTC
5163247 GGGTTTC
1 GGGTTTC
5163254 GGGATTTC
1 GGG-TTTC
5163262 GGGTTTC
1 GGGTTTC
*
5163269 GGGGTTC
1 GGGTTTC
5163276 GGGTTTCCC
1 GGGTTT--C
5163285 GGGTTTCC
1 GGGTTT-C
5163293 AGGGTTTC
1 -GGGTTTC
5163301 GGGTTTC
1 GGGTTTC
* *
5163308 AGGTGTC
1 GGGTTTC
5163315 GGG-TTC
1 GGGTTTC
* *
5163321 TGTTTTC
1 GGGTTTC
5163328 GGGTTTC
1 GGGTTTC
*
5163335 GGGTTGC
1 GGGTTTC
5163342 GGG-TTC
1 GGGTTTC
*
5163348 GGGGTTC
1 GGGTTTC
*
5163355 GGTTTTC
1 GGGTTTC
5163362 GGGTTTTC
1 GGG-TTTC
5163370 GGGATTTC
1 GGG-TTTC
5163378 GGGTTTC
1 GGGTTTC
5163385 GGGTTTC
1 GGGTTTC
5163392 GGGTTTC
1 GGGTTTC
5163399 GGGTTTTC
1 GGG-TTTC
5163407 GGGTTTTC
1 GGG-TTTC
5163415 GGGATTTC
1 GGG-TTTC
5163423 AGGGTTTTTC
1 -GGG--TTTC
*
5163433 TGGTATTTC
1 -GG-GTTTC
5163442 GGGTATTTTC
1 GGG---TTTC
5163452 GGGATTTCC
1 GGG-TTT-C
5163461 GGGTTTTC
1 GGG-TTTC
5163469 GGGTTTTCC
1 GGG-TTT-C
5163478 GGGTTT-
1 GGGTTTC
5163484 -GGTTGTC
1 GGGTT-TC
5163491 GGGTTTCC
1 GGGTTT-C
5163499 AGGGTTTC
1 -GGGTTTC
5163507 GGGTTTC
1 GGGTTTC
5163514 GGGTTTC
1 GGGTTTC
5163521 GGGTGGTTC
1 GGGT--TTC
5163530 GGGTTTC
1 GGGTTTC
* *
5163537 GCGGGTGC
1 G-GGTTTC
5163545 GGGTTTC
1 GGGTTTC
*
5163552 GGTTTTC
1 GGGTTTC
5163559 GGGTATT-
1 GGGT-TTC
5163566 GGG-TTC
1 GGGTTTC
5163572 GGGTTTATTCC
1 GGG--T-TT-C
5163583 GGGTTGCTC
1 GGGTT--TC
5163592 GGGTTTC
1 GGGTTTC
5163599 GGGTTTC
1 GGGTTTC
5163606 GGGTATTC
1 GGGT-TTC
5163614 --GTTTC
1 GGGTTTC
*
5163619 GGGTTGC
1 GGGTTTC
*
5163626 GAGTTTC
1 GGGTTTC
5163633 GGGTGTTC
1 GGGT-TTC
5163641 GGGTTTC
1 GGGTTTC
5163648 AGGGATTTC
1 -GGG-TTTC
5163657 GGGTTATC
1 GGGTT-TC
5163665 -GG-TTC
1 GGGTTTC
5163670 GGGTATATC
1 GGGT-T-TC
* *
5163679 GGAGGTGC
1 GG-GTTTC
5163687 GGG-TTC
1 GGGTTTC
*
5163693 GGGTATC
1 GGGTTTC
5163700 GGGTTTC
1 GGGTTTC
*
5163707 GGGTTGC
1 GGGTTTC
5163714 GGGTTTC
1 GGGTTTC
5163721 GGGTTTC
1 GGGTTTC
*
5163728 GAGGGTTC
1 G-GGTTTC
5163736 GGGTTTAC
1 GGGTTT-C
5163744 GGGTTTC
1 GGGTTTC
5163751 GGGTTTTC
1 GGG-TTTC
5163759 GGGTTTTC
1 GGG-TTTC
5163767 GGGTTTC
1 GGGTTTC
5163774 GAGGTTTCC
1 G-GGTTT-C
5163783 GGGTTTAC
1 GGGTTT-C
5163791 GGGTTTTC
1 GGG-TTTC
*
5163799 GGGTGTC
1 GGGTTTC
5163806 GGAGTTTCC
1 GG-GTTT-C
5163815 GGGTTTC
1 GGGTTTC
5163822 GGGTTTC
1 GGGTTTC
5163829 GGGTTTC
1 GGGTTTC
5163836 GGGTATTTTC
1 GGG---TTTC
5163846 AGGAGTTTC
1 -GG-GTTTC
5163855 GGGATTTC
1 GGG-TTTC
5163863 -GGTTTC
1 GGGTTTC
5163869 GGAGTTTC
1 GG-GTTTC
5163877 GGGTTTC
1 GGGTTTC
5163884 GGGTTTCTTC
1 GGG--T-TTC
5163894 GGGTTTC
1 GGGTTTC
5163901 GGGGTGTTTC
1 --GG-GTTTC
5163911 GGGTTTCC
1 GGGTTT-C
5163919 GAAGGATTTC
1 G--GG-TTTC
5163929 GGGTTTC
1 GGGTTTC
*
5163936 GGTTTTC
1 GGGTTTC
5163943 GGGGTTTATTCC
1 -GGG--T-TT-C
5163955 GGGTTTTTC
1 GGG--TTTC
5163964 -GG--TC
1 GGGTTTC
5163968 GGGTTATC
1 GGGTT-TC
5163976 GGGTTTC
1 GGGTTTC
*
5163983 GGAGTTGC
1 GG-GTTTC
5163991 GGGTTTC
1 GGGTTTC
5163998 GGGTTTTC
1 GGG-TTTC
5164006 GGGTTTC
1 GGGTTTC
5164013 GGGTTTTC
1 GGG-TTTC
5164021 GGG-TTC
1 GGGTTTC
5164027 GGGTTTCC
1 GGGTTT-C
5164035 GGGTTTC
1 GGGTTTC
5164042 GGGTTTC
1 GGGTTTC
5164049 GGGTTTTC
1 GGG-TTTC
5164057 GGGTTTC
1 GGGTTTC
5164064 GGGTTTC
1 GGGTTTC
*
5164071 GGGTTTGA
1 GGGTTT-C
5164079 GGGTTTC
1 GGGTTTC
5164086 GGGTTTC
1 GGGTTTC
5164093 GGGATTTC
1 GGG-TTTC
5164101 GGGTTTAC
1 GGGTTT-C
5164109 GGAG-TTC
1 GG-GTTTC
5164116 GGGTTTGC
1 GGGTTT-C
5164124 GGGTTTC
1 GGGTTTC
*
5164131 GGGTTGC
1 GGGTTTC
5164138 GGGTTTC
1 GGGTTTC
5164145 -GGTTTCC
1 GGGTTT-C
5164152 GGGTTTC
1 GGGTTTC
5164159 TGGG-TTC
1 -GGGTTTC
5164166 GCGGTTTC
1 G-GGTTTC
5164174 GGGTTTTC
1 GGG-TTTC
5164182 GGGTATT-
1 GGGT-TTC
5164189 GGGTTTC
1 GGGTTTC
5164196 -GGTTTGC
1 GGGTTT-C
*
5164203 GGGTAATC
1 GGGT-TTC
5164211 -GGTTTC
1 GGGTTTC
5164217 GGGTTTC
1 GGGTTTC
5164224 GGG-TTC
1 GGGTTTC
5164230 GGGTTTC
1 GGGTTTC
*
5164237 GGAGATTC
1 GG-GTTTC
5164245 GGGTTTC
1 GGGTTTC
5164252 GGG-TTC
1 GGGTTTC
5164258 GGGTTTC
1 GGGTTTC
5164265 GGGTTTC
1 GGGTTTC
*
5164272 GGGGTTC
1 GGGTTTC
5164279 -GGTTTC
1 GGGTTTC
*
5164285 GGGTTTG
1 GGGTTTC
5164292 GGGTTTTC
1 GGG-TTTC
5164300 AGGCGTTTAC
1 -GG-GTTT-C
5164310 GGGTTTC
1 GGGTTTC
5164317 GGGGTTTC
1 -GGGTTTC
5164325 AGGGTTTC
1 -GGGTTTC
5164333 GGGTTTC
1 GGGTTTC
5164340 -GGTTTC
1 GGGTTTC
5164346 GGGGATTTC
1 -GGG-TTTC
5164355 GGG-TTC
1 GGGTTTC
5164361 GGG-TT-
1 GGGTTTC
5164366 GGGTTTC
1 GGGTTTC
5164373 GGGTTTTTC
1 GGG--TTTC
5164382 GGGTTTCC
1 GGGTTT-C
5164390 AGGGTTTC
1 -GGGTTTC
5164398 GGGTTTC
1 GGGTTTC
5164405 GGGAATTTCACC
1 GGG--TTT---C
*
5164417 AGGTTTC
1 GGGTTTC
5164424 GGGTTTC
1 GGGTTTC
5164431 GGGTATTCGC
1 GGGT-TT--C
5164441 GGGTTTC
1 GGGTTTC
*
5164448 GGGTGTC
1 GGGTTTC
5164455 GGGTTTC
1 GGGTTTC
* *
5164462 TTCGGTTTA
1 --GGGTTTC
5164471 GGGTTTC
1 GGGTTTC
5164478 GGGTTTC
1 GGGTTTC
*
5164485 GGGTGTGC
1 GGGT-TTC
5164493 GGGTTTC
1 GGGTTTC
*
5164500 GGGGATTC
1 -GGGTTTC
5164508 GGGTTTCGTC
1 GGG-TT--TC
5164518 GGGTTTCC
1 GGGTTT-C
5164526 GGGTTTTTC
1 GGG--TTTC
*
5164535 GGGTTGC
1 GGGTTTC
*
5164542 GGGTTTA
1 GGGTTTC
5164549 GGAGTTTC
1 GG-GTTTC
5164557 GGG-TTC
1 GGGTTTC
5164563 -GGTTTC
1 GGGTTTC
5164569 GGGTTTC
1 GGGTTTC
5164576 GGGTTTC
1 GGGTTTC
5164583 AGGG-TTC
1 -GGGTTTC
5164590 GGGTTTC
1 GGGTTTC
5164597 GGGTTTC
1 GGGTTTC
5164604 GGGTTTC
1 GGGTTTC
5164611 GGGTTTC
1 GGGTTTC
5164618 GGGTTTC
1 GGGTTTC
5164625 GGGTCTTC
1 GGGT-TTC
5164633 GGGTTTC
1 GGGTTTC
5164640 GGG-TTC
1 GGGTTTC
5164646 GGAGTTTC
1 GG-GTTTC
*
5164654 GGGGTTC
1 GGGTTTC
5164661 -GGTTTC
1 GGGTTTC
*
5164667 GGGTTTA
1 GGGTTTC
5164674 GGGTATTC
1 GGGT-TTC
5164682 GGGTTTC
1 GGGTTTC
5164689 GGGTTTC
1 GGGTTTC
*
5164696 GGAGATTTAA
1 GG-G-TTT-C
5164706 GGGTTTC
1 GGGTTTC
5164713 -GGTTTCC
1 GGGTTT-C
5164720 GGGTTTC
1 GGGTTTC
*
5164727 GGGTTGAC
1 GGGTT-TC
5164735 GGGTTTC
1 GGGTTTC
*
5164742 GGGTTCC
1 GGGTTTC
*
5164749 GCGGTTTA
1 G-GGTTTC
5164757 GGGTTATC
1 GGGTT-TC
5164765 GGGGGTTTC
1 --GGGTTTC
5164774 GGGTTTTC
1 GGG-TTTC
5164782 GGGTTTCC
1 GGGTTT-C
5164790 GGGTTTC
1 GGGTTTC
5164797 GGGTTTC
1 GGGTTTC
5164804 GGGTTTC
1 GGGTTTC
5164811 GGGTGTTCAC
1 GGGT-TT--C
5164821 GAGGTTTCCC
1 G-GGTTT--C
5164831 GGGTTTC
1 GGGTTTC
*
5164838 GGTTTCTC
1 GGGTT-TC
5164846 GGG-TTC
1 GGGTTTC
5164852 GGGTTTC
1 GGGTTTC
5164859 GGGTTTC
1 GGGTTTC
5164866 ---TTTC
1 GGGTTTC
5164870 GGGTTTC
1 GGGTTTC
*
5164877 GTGGTTGC
1 G-GGTTTC
5164885 GGGTTTCC
1 GGGTTT-C
5164893 GGGTTTAC
1 GGGTTT-C
5164901 GGGATTTC
1 GGG-TTTC
5164909 GGGTTTC
1 GGGTTTC
*
5164916 GGGTTTTG
1 GGG-TTTC
*
5164924 GGGTTTAG
1 GGGTTT-C
**
5164932 GGGTGTGA
1 GGGT-TTC
*
5164940 GGGTTTTATGGG
1 GGG--TT-T--C
*
5164952 GGGTTTG
1 GGGTTTC
*
5164959 GGGTTTG
1 GGGTTTC
***
5164966 GGGTGGG
1 GGGTTTC
*
5164973 GGGTTTTT
1 GGG-TTTC
*
5164981 GGGTTCTGG
1 GGGTT-T-C
*
5164990 GGAGCTTTGA
1 GG-G-TTT-C
*
5165000 GGGTTTG
1 GGGTTTC
*
5165007 GGGTTATG
1 GGGTT-TC
5165015 GGGTTT-
1 GGGTTTC
*
5165021 GGGTATTG
1 GGGT-TTC
*
5165029 GGGTTTGGG
1 GGGTTT--C
*
5165038 GGGTTTGA
1 GGGTTT-C
*
5165046 GAGGTTTG
1 G-GGTTTC
*
5165054 GGGTGT-
1 GGGTTTC
5165060 GGGTTAGT-
1 GGGTT--TC
5165068 GGGTCTTGGC
1 GGGT-TT--C
*
5165078 AGGG-TTG
1 -GGGTTTC
*
5165085 GGGTTTG
1 GGGTTTC
*
5165092 GGGTTTG
1 GGGTTTC
*
5165099 GGGTTTTG
1 GGG-TTTC
*
5165107 GGGTTTGG
1 GGGTTT-C
** *
5165115 GGGGATG
1 GGGTTTC
*
5165122 GAGGTTTG
1 G-GGTTTC
**
5165130 GGGTTGG
1 GGGTTTC
* *
5165137 GGGATATG
1 GGG-TTTC
*
5165145 GGGTTTG
1 GGGTTTC
*
5165152 GGAGATAATTTG
1 GG-G----TTTC
*
5165164 GGGTTTG
1 GGGTTTC
*
5165171 GGGTATTG
1 GGGT-TTC
*
5165179 GGGATTTG
1 GGG-TTTC
* *
5165187 GGGCTTG
1 GGGTTTC
5165194 GGGTTTAC
1 GGGTTT-C
5165202 GGGGGTTT-
1 --GGGTTTC
* *
5165210 TGGTATTGG
1 GGGT-TT-C
*
5165219 GGGTTTG
1 GGGTTTC
*
5165226 GGTGTTTTG
1 GG-G-TTTC
*
5165235 GGGTTGTG
1 GGGTT-TC
*
5165243 GGGTTTG
1 GGGTTTC
5165250 GGGTATTC
1 GGGT-TTC
5165258 GGGGTTTC
1 -GGGTTTC
*
5165266 GGGTGTC
1 GGGTTTC
5165273 GGGTTTC
1 GGGTTTC
5165280 GGGTTTC
1 GGGTTTC
5165287 GGGTTTC
1 GGGTTTC
5165294 GAGGTTTC
1 G-GGTTTC
5165302 GGGTTTC
1 GGGTTTC
5165309 GCGGTTAGTC
1 G-GGTT--TC
5165319 GGGCTTTC
1 GGG-TTTC
5165327 GAGGTATT-
1 G-GGT-TTC
5165335 GCGGTTTC
1 G-GGTTTC
5165343 GGGTTTC
1 GGGTTTC
5165350 GGGTTTC
1 GGGTTTC
5165357 GAGGTTTC
1 G-GGTTTC
5165365 GGGTATATC
1 GGGT-T-TC
5165374 GGGATTATC
1 GGG-TT-TC
5165383 GGGCTTGTTC
1 GGG--T-TTC
5165393 AGGG--TC
1 -GGGTTTC
5165399 GGGATTCATCC
1 GGG-TT--T-C
5165410 GGGTTATC
1 GGGTT-TC
5165418 GAGGTTTC
1 G-GGTTTC
5165426 GGGTTTTC
1 GGG-TTTC
*
5165434 GGGGTATCC
1 -GGGT-TTC
5165443 GGGTTTTCC
1 GGG-TTT-C
5165452 GGGTTTC
1 GGGTTTC
5165459 GGGTTTC
1 GGGTTTC
* *
5165466 GGGGGTCC
1 -GGGTTTC
5165474 GAGGAGATATTCC
1 --GG-G-T-TT-C
*
5165487 AGGAG-TGC
1 -GG-GTTTC
5165495 GGGATTTC
1 GGG-TTTC
5165503 GGGTATTAC
1 GGGT-TT-C
*****
5165512 -CCCACC
1 GGGTTTC
5165518 GGGTTTTC
1 GGG-TTTC
5165526 GGGTTTCCC
1 GGGTTT--C
5165535 GGG-TTC
1 GGGTTTC
5165541 GGGTTTTC
1 GGG-TTTC
5165549 GCGGCTTTC
1 G-GG-TTTC
5165558 GGGTTTC
1 GGGTTTC
5165565 GAGGTTTC
1 G-GGTTTC
*
5165573 ---CTTC
1 GGGTTTC
5165577 AGGGTTTC
1 -GGGTTTC
5165585 GGGTCTTCC
1 GGGT-TT-C
*
5165594 GGGTTTT
1 GGGTTTC
**
5165601 GGGGGTC
1 GGGTTTC
5165608 GGGTTTCC
1 GGGTTT-C
5165616 GGGATTTCC
1 GGG-TTT-C
5165625 GGGTTTTC
1 GGG-TTTC
5165633 GAGAGTTCTC
1 G-G-GTT-TC
5165643 GGGATTTTC
1 GGG--TTTC
*
5165652 CGGTTTC
1 GGGTTTC
5165659 -GGTATTC
1 GGGT-TTC
5165666 GGGTTTC
1 GGGTTTC
5165673 -GGTTTC
1 GGGTTTC
5165679 GGGATTTC
1 GGG-TTTC
*
5165687 GGGGTTC
1 GGGTTTC
*
5165694 GGGTTCC
1 GGGTTTC
5165701 GAGGTTTC
1 G-GGTTTC
*
5165709 GGGTGTCC
1 GGGT-TTC
5165717 GGGTATTC
1 GGGT-TTC
5165725 GGAGTTTC
1 GG-GTTTC
5165733 GGGTTTC
1 GGGTTTC
*
5165740 CGGTTTC
1 GGGTTTC
*
5165747 GGGTTGC
1 GGGTTTC
5165754 GGGTTGTTC
1 GGG-T-TTC
5165763 GGGTTTC
1 GGGTTTC
** *
5165770 -TATTCCC
1 GGGTT-TC
5165777 GGGATTATC
1 GGG-TT-TC
5165786 GGG-TTC
1 GGGTTTC
5165792 GGGTGTTCC
1 GGGT-TT-C
5165801 GGGTTTC
1 GGGTTTC
*
5165808 GGGTTGC
1 GGGTTTC
5165815 GAGGTTATC
1 G-GGTT-TC
5165824 GGGTTTC
1 GGGTTTC
5165831 GGGTTTCC
1 GGGTTT-C
*
5165839 GGGTTGC
1 GGGTTTC
* *
5165846 AGGTTTA
1 GGGTTTC
5165853 GGGTTTC
1 GGGTTTC
5165860 GCGGTTTC
1 G-GGTTTC
5165868 GGGTATATTC
1 GGG--T-TTC
5165878 GGAGTTTC
1 GG-GTTTC
5165886 GGGTTTTC
1 GGG-TTTC
5165894 GGGTTTC
1 GGGTTTC
5165901 -GGTTTC
1 GGGTTTC
5165907 GGG-TTC
1 GGGTTTC
5165913 GGGTTTCCGC
1 GGGTTT---C
*
5165923 GGGTGTC
1 GGGTTTC
5165930 GGGTTTC
1 GGGTTTC
5165937 GGGTTTAC
1 GGGTTT-C
*
5165945 GGGTTTAG
1 GGGTTT-C
*
5165953 GGGGTT-
1 GGGTTTC
* *
5165959 AGGTTAC
1 GGGTTTC
5165966 GGGTTTAC
1 GGGTTT-C
5165974 GGGTTTC
1 GGGTTTC
5165981 GAGGTTT-
1 G-GGTTTC
5165988 GGGTTTC
1 GGGTTTC
5165995 GTGGTTTC
1 G-GGTTTC
*
5166003 GGGTTTA
1 GGGTTTC
*
5166010 GGGTTTA
1 GGGTTTC
5166017 GGGTTTAC
1 GGGTTT-C
5166025 GGG-TTC
1 GGGTTTC
5166031 GGGTTTC
1 GGGTTTC
5166038 GGGTTTC
1 GGGTTTC
5166045 GGGTTATTC
1 GGG-T-TTC
5166054 GGGTTTCCC
1 GGGTTT--C
*
5166063 GGGGTTC
1 GGGTTTC
5166070 GGG-TTC
1 GGGTTTC
5166076 GGGGTTTC
1 -GGGTTTC
5166084 GGGTTTATC
1 GGG-TT-TC
5166093 GGAGTTTCTC
1 GG-G-TT-TC
5166103 GGGTTTC
1 GGGTTTC
5166110 GGGTTTC
1 GGGTTTC
5166117 GGGTTTC
1 GGGTTTC
*
5166124 GAGAGGTTC
1 G-G-GTTTC
5166133 GGGTTATC
1 GGGTT-TC
5166141 GGG-TTC
1 GGGTTTC
5166147 AGGGAGTTTGAC
1 --GG-GTTT--C
5166159 GAGGTTTC
1 G-GGTTTC
5166167 GAGGTTTC
1 G-GGTTTC
5166175 GGGTTTC
1 GGGTTTC
*
5166182 -GGTTTA
1 GGGTTTC
5166188 GGGTTTC
1 GGGTTTC
*
5166195 TGGTTATC
1 GGGTT-TC
5166203 GGGATTTC
1 GGG-TTTC
5166211 GGG-TTC
1 GGGTTTC
5166217 GGAGTTTTC
1 GG-G-TTTC
5166226 -GGTTTC
1 GGGTTTC
*
5166232 -GGTTTA
1 GGGTTTC
5166238 GGGTCTCTC
1 GGGT-T-TC
5166247 GGGTTTC
1 GGGTTTC
5166254 GGGTTTC
1 GGGTTTC
5166261 GGGTTTCCAC
1 GGGTTT---C
5166271 GGGTCATTC
1 GGGT--TTC
5166280 GGGTTTTCC
1 GGG-TTT-C
5166289 GGGTTTTC
1 GGG-TTTC
*
5166297 GGGGTTC
1 GGGTTTC
5166304 GGGTTTC
1 GGGTTTC
*
5166311 GGGGTTC
1 GGGTTTC
5166318 GGGTTTC
1 GGGTTTC
5166325 GGGACTTTC
1 GGG--TTTC
5166334 GGG-TTC
1 GGGTTTC
5166340 GGGTTTTC
1 GGG-TTTC
*
5166348 AGGGGATTC
1 --GGGTTTC
5166357 AGGGTTATCC
1 -GGGTT-T-C
5166367 GAGGTTTCC
1 G-GGTTT-C
5166376 GGGTTTTC
1 GGG-TTTC
5166384 GGGTTT-
1 GGGTTTC
5166390 GGGTTTC
1 GGGTTTC
5166397 GCGGTTTCC
1 G-GGTTT-C
5166406 GGGTTTTC
1 GGG-TTTC
5166414 GGGGTTTC
1 -GGGTTTC
5166422 GGGTTTTCC
1 GGG-TTT-C
***
5166431 AATTTTC
1 GGGTTTC
5166438 GGGTTTCC
1 GGGTTT-C
**
5166446 GGGATCAC
1 GGG-TTTC
5166454 GGGTTTC
1 GGGTTTC
*
5166461 -GGTTGC
1 GGGTTTC
5166467 GGGTTTC
1 GGGTTTC
5166474 GGGGTTTC
1 -GGGTTTC
5166482 GGAGTTTC
1 GG-GTTTC
5166490 -GGTTTC
1 GGGTTTC
5166496 GGGTTTC
1 GGGTTTC
5166503 -GGTTTCC
1 GGGTTT-C
*
5166510 GGGTCATC
1 GGGT-TTC
*
5166518 GAGTTTC
1 GGGTTTC
*
5166525 GGGTGTC
1 GGGTTTC
5166532 GGGTTTC
1 GGGTTTC
5166539 GGGTTTC
1 GGGTTTC
5166546 GGGTTTTC
1 GGG-TTTC
5166554 GGGTTTC
1 GGGTTTC
5166561 GGGTTTC
1 GGGTTTC
*
5166568 GGGTGTC
1 GGGTTTC
5166575 GGGTTTC
1 GGGTTTC
5166582 GGGTTTC
1 GGGTTTC
** *
5166589 GAATTCACC
1 GGGTT--TC
5166598 GGGTTTC
1 GGGTTTC
5166605 GAGGTTATC
1 G-GGTT-TC
5166614 AGGGTATTTC
1 -GGG--TTTC
*
5166624 GACGTTTC
1 G-GGTTTC
5166632 GGGTTTC
1 GGGTTTC
5166639 GGGTTTCTTC
1 GGG--T-TTC
5166649 GGGTTTAC
1 GGGTTT-C
5166657 GGGTTTC
1 GGGTTTC
5166664 GGGTTTC
1 GGGTTTC
5166671 GGGTTTC
1 GGGTTTC
5166678 GGAGGCTTT-
1 -G-GG-TTTC
5166687 GGGTTTC
1 GGGTTTC
*
5166694 GAGGTTGC
1 G-GGTTTC
5166702 GGGTTT-
1 GGGTTTC
5166708 GAGGTTTC
1 G-GGTTTC
*
5166716 CGGTATTC
1 GGGT-TTC
*
5166724 GGG-TTA
1 GGGTTTC
5166730 GGGATTTC
1 GGG-TTTC
* *
5166738 -GATGTC
1 GGGTTTC
5166744 GGG-TTC
1 GGGTTTC
5166750 -GGTTTC
1 GGGTTTC
5166756 GCGGTTTTTTC
1 G-GG---TTTC
5166767 AGGGTTTC
1 -GGGTTTC
5166775 GGGTTTC
1 GGGTTTC
5166782 GGGTTTC
1 GGGTTTC
5166789 GGGTTTTC
1 GGG-TTTC
*
5166797 GAGGGTTC
1 G-GGTTTC
5166805 -GGTTTC
1 GGGTTTC
5166811 GGGTTTC
1 GGGTTTC
5166818 GGGTTTAC
1 GGGTTT-C
5166826 GGGTTTC
1 GGGTTTC
*
5166833 GGGTTGC
1 GGGTTTC
5166840 GGGTTTC
1 GGGTTTC
*
5166847 -GGTATGC
1 GGGT-TTC
5166854 GGGTTTC
1 GGGTTTC
5166861 GGGTATTC
1 GGGT-TTC
*
5166869 GGGTTGC
1 GGGTTTC
*
5166876 GGGGTTC
1 GGGTTTC
*
5166883 GGGTAGTC
1 GGGT-TTC
5166891 GGGTTTC
1 GGGTTTC
5166898 GGGTTTTC
1 GGG-TTTC
5166906 GGGTTTC
1 GGGTTTC
5166913 GCGGTTATC
1 G-GGTT-TC
*
5166922 TGGTTTC
1 GGGTTTC
*
5166929 AGGGGTTC
1 -GGGTTTC
5166937 GAGGTTATTC
1 G-GG-T-TTC
5166947 AAGGGTTTTTC
1 --GGG--TTTC
5166958 GGGTTTC
1 GGGTTTC
5166965 GGGTTTC
1 GGGTTTC
5166972 GGGTTTCTTC
1 GGG--T-TTC
5166982 GGGTTTTC
1 GGG-TTTC
5166990 GGGTTTC
1 GGGTTTC
5166997 -GGTTTC
1 GGGTTTC
*
5167003 GAGTTTC
1 GGGTTTC
5167010 GGGGTTTC
1 -GGGTTTC
5167018 -GGTTTC
1 GGGTTTC
****
5167024 GGGGGGGG
1 -GGGTTTC
5167032 GGGTTTC
1 GGGTTTC
5167039 GGGTTTC
1 GGGTTTC
5167046 AGGAGTTTCC
1 -GG-GTTT-C
5167056 AGGAGTTTCC
1 -GG-GTTT-C
5167066 AGGGTTTC
1 -GGGTTTC
*
5167074 GGGTTGC
1 GGGTTTC
5167081 GGGTTTC
1 GGGTTTC
5167088 GGGATTTC
1 GGG-TTTC
5167096 GGGTTTC
1 GGGTTTC
*
5167103 GGGGTTC
1 GGGTTTC
5167110 GGGTTTTAC
1 GGG-TTT-C
5167119 GGGGTTTC
1 -GGGTTTC
*
5167127 AGAGGTTTA
1 -G-GGTTTC
5167136 GGGTTTCC
1 GGGTTT-C
*
5167144 GGGGTTC
1 GGGTTTC
5167151 GGGTATTC
1 GGGT-TTC
5167159 -GGTTTC
1 GGGTTTC
*
5167165 GGGATTC
1 GGGTTTC
*
5167172 AGGGGTTC
1 -GGGTTTC
*
5167180 GGGAGTTC
1 GGG-TTTC
*
5167188 GGGATTTA
1 GGG-TTTC
*
5167196 GGGTGTC
1 GGGTTTC
5167203 GGGTTTCC
1 GGGTTT-C
5167211 GGG-TTC
1 GGGTTTC
5167217 -GGTTTC
1 GGGTTTC
*
5167223 GGGTGTC
1 GGGTTTC
5167230 GGGTTTTACC
1 GGG-TTT--C
*
5167240 GGGTTCC
1 GGGTTTC
5167247 GGGTTTC
1 GGGTTTC
5167254 GGGTTTC
1 GGGTTTC
5167261 GGGTTTC
1 GGGTTTC
5167268 AGGGTTTATC
1 -GGG-TT-TC
5167278 GAAGGTTTCCC
1 G--GGTTT--C
5167289 GGGTTTATC
1 GGG-TT-TC
5167298 GGGTTTC
1 GGGTTTC
5167305 GCGGTTTC
1 G-GGTTTC
5167313 -GGTTTC
1 GGGTTTC
5167319 GGGTTTC
1 GGGTTTC
*
5167326 GGG-TGC
1 GGGTTTC
* *
5167332 GGG-GTA
1 GGGTTTC
5167338 GGGTTTC
1 GGGTTTC
5167345 GGGTCTTC
1 GGGT-TTC
5167353 GGGTTTCC
1 GGGTTT-C
5167361 GGGTTTC
1 GGGTTTC
*
5167368 ---TTAC
1 GGGTTTC
5167372 GGGTTTCC
1 GGGTTT-C
5167380 GGGTTTCC
1 GGGTTT-C
*
5167388 GGGTATGC
1 GGGT-TTC
5167396 GGGATTTC
1 GGG-TTTC
5167404 GGGTATTC
1 GGGT-TTC
5167412 GGGTTTTC
1 GGG-TTTC
5167420 -GGTTTC
1 GGGTTTC
5167426 GGGTTTTC
1 GGG-TTTC
5167434 GGGTCTTC
1 GGGT-TTC
5167442 GGG-TTC
1 GGGTTTC
5167448 GGAGTTTC
1 GG-GTTTC
*
5167456 -GGTGTC
1 GGGTTTC
5167462 -GGTTAATC
1 GGGTT--TC
5167470 AGGAGTTTCC
1 -GG-GTTT-C
5167480 GGGTGTTC
1 GGGT-TTC
5167488 GGGTTTC
1 GGGTTTC
5167495 GGGTTTC
1 GGGTTTC
5167502 GGG-TTC
1 GGGTTTC
*
5167508 AGGGTGATC
1 -GGGT-TTC
5167517 GAGG-TTC
1 G-GGTTTC
5167524 TGGGTTTTC
1 -GGG-TTTC
5167533 GGGTTGTCC
1 GGGTT-T-C
5167542 GGGTTTAC
1 GGGTTT-C
5167550 GGGTTTC
1 GGGTTTC
5167557 GGGTATTC
1 GGGT-TTC
5167565 GGGTTATC
1 GGGTT-TC
5167573 GGGTTTC
1 GGGTTTC
5167580 GGGTCTTC
1 GGGT-TTC
5167588 -GGTTT-
1 GGGTTTC
* *
5167593 TGTTTTC
1 GGGTTTC
5167600 AGGAGTTTC
1 -GG-GTTTC
5167609 GGG-TTC
1 GGGTTTC
5167615 GGGTTATC
1 GGGTT-TC
5167623 GGGTTT-
1 GGGTTTC
*
5167629 TGGTTATC
1 GGGTT-TC
5167637 GGG-TTC
1 GGGTTTC
5167643 GGGTTT-
1 GGGTTTC
** *
5167649 ATG-ATC
1 GGGTTTC
5167655 GGGATGTTC
1 GGG-T-TTC
5167664 -GGTTTC
1 GGGTTTC
5167670 --G-TTC
1 GGGTTTC
5167674 AGGGTTTC
1 -GGGTTTC
5167682 GGGTTTC
1 GGGTTTC
5167689 GGGTTTC
1 GGGTTTC
*
5167696 GGGTTAC
1 GGGTTTC
5167703 GGGTTTTC
1 GGG-TTTC
5167711 GGGTTTC
1 GGGTTTC
5167718 AGGGTTTC
1 -GGGTTTC
5167726 GGGTTTC
1 GGGTTTC
5167733 GGGTTTTC
1 GGG-TTTC
5167741 GGGGTTTC
1 -GGGTTTC
5167749 GGGTTTC
1 GGGTTTC
5167756 GGGATTT-
1 GGG-TTTC
5167763 GGGTTATCC
1 GGGTT-T-C
5167772 GGGTTTC
1 GGGTTTC
5167779 TCTCTACTCA
Statistics
Matches: 8877, Mismatches: 787, Indels: 2484
0.73 0.06 0.20
Matches are distributed among these distances:
4 26 0.00
5 94 0.01
6 722 0.08
7 3818 0.43
8 2502 0.28
9 1046 0.12
10 448 0.05
11 150 0.02
12 55 0.01
13 11 0.00
14 5 0.00
ACGTcount: A:0.06, C:0.13, G:0.42, T:0.39
Consensus pattern (7 bp):
GGGTTTC
Found at i:5162687 original size:97 final size:98
Alignment explanation
Indices: 5162578--5162901 Score: 276
Period size: 97 Copynumber: 3.4 Consensus size: 98
5162568 TTGGGGTTTC
*
5162578 GGGGTTTAGGGGTACTT-GGGG-TTTGGGGTTTGGGG-TTGGGGTTTGGGGTGTATGGCGGT-TA
1 GGGGTTTAGGGGT--TTAGGGGTTTTGGGGTTTGGGGTTTGGGGTTTGGGGT-TATGGAGGTAT-
5162639 TGAGAGGTTT-GGGGTTGGGCGGGTGGTTGAGGGTTCT
62 TG-GAGGTTTGGGGGTTGGGCGGGTGGTTGAGGGTTCT
*
5162676 GGGGTTT-GGGGTTTAGGGGTTTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTTGGAGGTATTGGA
1 GGGGTTTAGGGGTTTAGGGGTTTTGGGGTTTGGGGTTTGGGGTTTGGGGTTATGGAGGTATTGGA
*
5162740 GGTTTGGGGGTT--G-GGGT--TTG-GGAGTTCG
66 GGTTTGGGGGTTGGGCGGGTGGTTGAGG-GTTCT
5162768 GGGGTTT-GGGGTTT-GGGGTTTTGGGGTGTTTGGCGGTTT-GGGTTATGGGGGTT-TGGAGG--
1 GGGGTTTAGGGGTTTAGGGGTTTT-GGG-GTTTGG-GGTTTGGGGTT-T-GGGGTTATGGAGGTA
* * ** * * *
5162827 TTGGGGGTTTTGGGTGTTGGG-GTTTGGGGTGTGGGTTTT
61 TTGGAGG-TTTGGGGGTTGGGCGGGT-GGTTGAGGGTTCT
* *
5162866 GGGGTTTCGGGGTTT-GGGG-TTTGGGATTTGGGGTTT
1 GGGGTTTAGGGGTTTAGGGGTTTTGGGGTTTGGGGTTT
5162902 TGAGGGTTGC
Statistics
Matches: 196, Mismatches: 11, Indels: 41
0.79 0.04 0.17
Matches are distributed among these distances:
91 10 0.05
92 30 0.15
93 20 0.10
94 16 0.08
95 17 0.09
96 16 0.08
97 37 0.19
98 37 0.19
99 13 0.07
ACGTcount: A:0.05, C:0.02, G:0.54, T:0.39
Consensus pattern (98 bp):
GGGGTTTAGGGGTTTAGGGGTTTTGGGGTTTGGGGTTTGGGGTTTGGGGTTATGGAGGTATTGGA
GGTTTGGGGGTTGGGCGGGTGGTTGAGGGTTCT
Found at i:5163445 original size:18 final size:17
Alignment explanation
Indices: 5163358--5163483 Score: 124
Period size: 17 Copynumber: 7.6 Consensus size: 17
5163348 GGGGTTCGGT
5163358 TTTCGGG-TTTTCGGGA
1 TTTCGGGTTTTTCGGGA
5163374 TTTCGGG--TTTCGGG-
1 TTTCGGGTTTTTCGGGA
*
5163388 TTTCGGG--TTTCGGGT
1 TTTCGGGTTTTTCGGGA
5163403 TTTCGGG-TTTTCGGGA
1 TTTCGGGTTTTTCGGGA
*
5163419 TTTCAGGGTTTTTCTGGTA
1 TTTC-GGGTTTTTC-GGGA
5163438 TTTCGGGTATTTTCGGGA
1 TTTCGGGT-TTTTCGGGA
*
5163456 TTTCCGGG-TTTTCGGGT
1 TTT-CGGGTTTTTCGGGA
5163473 TTTCCGGGTTT
1 TTT-CGGGTTT
5163484 GGTTGTCGGG
Statistics
Matches: 98, Mismatches: 4, Indels: 14
0.84 0.03 0.12
Matches are distributed among these distances:
14 14 0.14
15 14 0.14
16 18 0.18
17 19 0.19
18 17 0.17
19 16 0.16
ACGTcount: A:0.05, C:0.13, G:0.35, T:0.47
Consensus pattern (17 bp):
TTTCGGGTTTTTCGGGA
Found at i:5165052 original size:47 final size:45
Alignment explanation
Indices: 5164952--5165253 Score: 142
Period size: 47 Copynumber: 6.4 Consensus size: 45
5164942 GTTTTATGGG
** * * *
5164952 GGGTTTGGGGTTTGGGGTGGGGGGTTTTTGGGTTCTGGGGAGCTTTGA
1 GGGTTTGGGGTTTGGGGT-TTGGGTATTGGGGTT-TGGGG-GGTTTGA
5165000 GGGTTTGGGGTTATGGGGTTTGGGTATTGGGGTTTGGGGGGTTTGA
1 GGGTTTGGGGTT-TGGGGTTTGGGTATTGGGGTTTGGGGGGTTTGA
* * *
5165046 GAGGTTTGGGGTGT-GGGTTAGTGGGTCTTGGCAGGGTT--GGGGTTTG-
1 G-GGTTTGGGGTTTGGGGTT--TGGGTATTGG--GGTTTGGGGGGTTTGA
* *
5165092 GGGTTTGGGGTTTTGGGGTTTGGGGGGA-TGGAGGTTT--GGGG-TTGG
1 GGGTTTGGGG-TTTGGGGTTT--GGGTATTGG-GGTTTGGGGGGTTTGA
* *
5165137 GGGATATGGGGTTTGGGAGATAATTTGGGGT-TTGGGGTATT-GGGGATTTG-
1 GGG-TTTGGGGTTTGGG-G----TTT-GGGTATTGGGGT-TTGGGGGGTTTGA
* * * *
5165187 GGGCTTGGGGTTTACGGGGGTTTTGGTATTGGGGGTTTGGGTGTTTTG-
1 GGGTTTGGGGTTT---GGGGTTTGGGTATT-GGGGTTTGGGGGGTTTGA
5165235 GGGTTGTGGGGTTTGGGGT
1 GGGTT-TGGGGTTTGGGGT
5165254 ATTCGGGGTT
Statistics
Matches: 205, Mismatches: 21, Indels: 58
0.72 0.07 0.20
Matches are distributed among these distances:
44 3 0.01
45 33 0.16
46 29 0.14
47 47 0.23
48 42 0.20
49 35 0.17
50 9 0.04
51 4 0.02
52 3 0.01
ACGTcount: A:0.07, C:0.02, G:0.54, T:0.37
Consensus pattern (45 bp):
GGGTTTGGGGTTTGGGGTTTGGGTATTGGGGTTTGGGGGGTTTGA
Found at i:5165538 original size:17 final size:16
Alignment explanation
Indices: 5165516--5165564 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
5165506 TATTACCCCA
5165516 CCGGGTTTTCGGGTTTC
1 CCGGG-TTTCGGGTTTC
5165533 CCGGG-TTCGGGTTTTC
1 CCGGGTTTCGGG-TTTC
* *
5165549 GCGGCTTTCGGGTTTC
1 CCGGGTTTCGGGTTTC
5165565 GAGGTTTCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 6 0.21
16 11 0.39
17 11 0.39
ACGTcount: A:0.00, C:0.24, G:0.37, T:0.39
Consensus pattern (16 bp):
CCGGGTTTCGGGTTTC
Found at i:5165628 original size:22 final size:23
Alignment explanation
Indices: 5165583--5165628 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
5165573 CTTCAGGGTT
* **
5165583 TCGGGTCTTCCGGGTTTTGGGGG
1 TCGGGTCTTCCGGGATTTCCGGG
5165606 TCGGGT-TTCCGGGATTTCCGGG
1 TCGGGTCTTCCGGGATTTCCGGG
5165628 T
1 T
5165629 TTTCGAGAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.02, C:0.20, G:0.43, T:0.35
Consensus pattern (23 bp):
TCGGGTCTTCCGGGATTTCCGGG
Found at i:5166111 original size:79 final size:74
Alignment explanation
Indices: 5165517--5167778 Score: 727
Period size: 76 Copynumber: 29.7 Consensus size: 74
5165507 ATTACCCCAC
* *
5165517 CGGGTTTTCGGGTTTCCCGGGTTCGGGTTTTCGCGGCTTTCGGG-TTTCGAGGTTTCCTTCAGGG
1 CGGG-TTTCGGGTTT--CGGGTTCGGGGTTTCG-GGTTTTCGGGTTTTCG-GG--T--TTC-GGG
5165581 TTTCGGGTCTTCCGGGTT-TT
56 TTTCGGGT-TT-CGGGTTATT
** * * *
5165601 -GGGGGTCGGGTTTCCGGGATTTCCGGGTTTTCGAGAGTTCTCGGGATTTTCCGGTTTC-GGTAT
1 CGGGTTTCGGGTTT-CGGG--TT-CGGGGTTTCG-G-GTTTTCGGG-TTTTCGGGTTTCGGGT-T
5165664 TCGGGTTTC-GG-T-TT
58 TCGGGTTTCGGGTTATT
* * * * * *
5165678 CGGGATTTCGGGGTTCGGGTTCCGAGGTTTCGGGTGTCCGGGTATTCGGAGTTTCGGGTTTCCGG
1 CGGG-TTTCGGGTTTCGGGTT-CGGGGTTTCGGGTTTTCGGGTTTTCGG-GTTTCGGGTTTCGGG
*
5165743 TTTCGGG-T-TG
63 TTTCGGGTTATT
** * * *
5165753 CGGGTTGTTCGGGTTTC-TATTCCCGGGATTATCGGG--TTCGGGTGTTCCGGGTTTCGGGTTGC
1 CGGG-T-TTCGGGTTTCGGGTT--CGGGGTT-TCGGGTTTTCGGGT-TTTCGGGTTTCGGGTTTC
5165815 GAGGTTATCGGG-T-TT
60 G-GGTT-TCGGGTTATT
* * **
5165830 CGGGTTTCCGGGTTGCAGGTTTAGGGTTTCGCGG-TTTCGGGTATATTCGGAGTTTCGGGTTTTC
1 CGGGTTT-CGGGTTTCGGGTTCGGGGTTTCG-GGTTTTCGGGT-T-TTCGG-GTTTCGGG-TTTC
5165894 GGGTTTC-GG-T-TT
60 GGGTTTCGGGTTATT
* ** * * *
5165906 CGGG-TTCGGGTTTCCGCGGGTGTC-GGGTTTCGGGTTTACGGGTTTAGGGGGTT-AGGTTACGG
1 CGGGTTTCGGGTTT---CGGGT-TCGGGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGGTTTCGG
5165968 GTTTACGGG-T-TT
62 GTTT-CGGGTTATT
* * *
5165980 CGAGGTTT-GGGTTTCGTGGTTTC-GGGTTTAGGG-TTTAGGGTTTACGGG-TTCGGGTTTCGGG
1 CG-GGTTTCGGGTTTCG-GG-TTCGGGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGGTTTCGGG
5166041 TTTCGGGTTATT
63 TTTCGGGTTATT
*
5166053 CGGGTTTCCCGGGGTTCGGGTTCGGGGTTTCGGGTTTATCGGAGTTTCTCGGGTTTCGGGTTTCG
1 CGGGTTT--CGGGTTTCGGGTTCGGGGTTTCGGGTTT-TCGG-GTTT-TCGGGTTTCGGGTTTCG
* ***
5166118 GGTTTCGAGAGGTT
61 GGTTTCGGGTTATT
* *
5166132 CGGGTTATCGGG-TTCAGGGAGTTTGACGAGGTTTCGAGG-TTTCGGG-TTTC-GGTTTAGGGTT
1 CGGGTT-TCGGGTTTC--GG-G-TT--CGGGGTTTCG-GGTTTTCGGGTTTTCGGGTTTCGGGTT
* *
5166193 TCTGGTTATCGGGAT-TT
58 TCGGGTT-TCGGGTTATT
* * *
5166210 CGGG-TTCGGAGTTTTCGGTTTC--GGTTTAGGGTCTCTCGGG-TTTCGGGTTTCGGGTTTCCAC
1 CGGGTTTCGG-G-TTTCGGGTTCGGGGTTTCGGGT-TTTCGGGTTTTCGGGTTTCGGGTTT---C
5166271 GGGTCATTCGGGTT-TT
60 GGGT--TTCGGGTTATT
* *
5166287 CCGGGTTTTCGGGGTTCGGGTTTCGGGG-TTCGGG-TTTCGGGACTTTCGGG-TTCGGGTTTTCA
1 -CGGG-TTTCGGGTTTCGGG-TTCGGGGTTTCGGGTTTTCGGG-TTTTCGGGTTTCGGG-TTTC-
* *
5166349 GGGGATTCAGGGTTATC
60 -GGGTTTC-GGGTTATT
* *
5166366 CGAGGTTTCCGGGTTTTCGGGTT-TGGGTTTCGCGGTTTCCGGGTTTTCGGGGTTTCGGGTTTTC
1 CG-GGTTT-CGGG-TTTCGGGTTCGGGGTTTCG-GGTTTTCGGGTTTTC-GGGTTTCGGG-TTT-
*** *
5166430 CAATTTTCGGGTT-TC
59 CGGGTTTCGGGTTATT
** *
5166445 CGGGATCACGGGTTTC-GGTT-GCGGGTTTCGGGGTTTCGGAG-TTTC-GGTTTCGGGTTTC-GG
1 CGGG-TTTCGGGTTTCGGGTTCG-GGGTTTCGGGTTTTCGG-GTTTTCGGGTTTCGGGTTTCGGG
*
5166505 TTTCCGGGTCA-T
63 TTT-CGGGTTATT
* * *
5166517 CGAGTTTCGGGTGTCGGGTTTC-GGGTTTCGGGTTTTCGGG-TTTCGGGTTTCGGGTGTCGGGTT
1 CGGGTTTCGGGTTTCGGG-TTCGGGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGGTTTCGGGTT
5166580 TCGGGTTTCGAATT
65 TCGGG-TT---ATT
**
5166594 CACCGGGTTTCGAGGTTATCAGGGTATTTCGACGTTTCGGG-TTTCGGGTTTCTTCGGGTTTACG
1 ---CGGGTTTCG-GGTT-TC-GGG---TTCGGGGTTTCGGGTTTTCGGG-TT-TTCGGGTTT-CG
5166658 GGTTTCGGGTTTCGGG-T-TT
54 GGTTTCGGGTTTCGGGTTATT
* * *
5166677 CGGAGGCTTT-GGGTTTCGAGGTT-GCGGGTTT-GAGG-TTTCCGGTATTCGGG-TTAGGGATTT
1 C-G-GG-TTTCGGGTTTCG-GGTTCG-GGGTTTCG-GGTTTTCGGGTTTTCGGGTTTCGGG-TTT
* *
5166737 C-GATGTCGGG---TT
59 CGGGTTTCGGGTTATT
*
5166749 C-GGTTTCGCGGTTTTTTCAGGGTTTC-GGGTTTCGGG-TTTCGGGTTTTCGAGGGTTC-GGTTT
1 CGGGTTTCG-GG---TTTC-GGG-TTCGGGGTTTCGGGTTTTCGGGTTTTCG-GGTTTCGGGTTT
*
5166810 CGGGTTTCGGGTT-TA
59 CGGGTTTCGGGTTATT
* * * * *
5166825 CGGGTTTCGGGTTGCGGGTTTC--GGTATGCGGG-TTTCGGGTATTCGGGTTGCGGGGTTCGGGT
1 CGGGTTTCGGGTTTCGGG-TTCGGGGT-TTCGGGTTTTCGGGTTTTCGGGTTTCGGGTTTCGGGT
*
5166887 AGTCGGG-T-TT
64 -TTCGGGTTATT
* *
5166897 CGGGTTTTCGGGTTTCGCGGTTATC-TGGTTTCAGGG-GTTCGAGGTTATTCAAGGGTTTTTCGG
1 CGGG-TTTCGGGTTTCG-GG-T-TCGGGGTTTC-GGGTTTTCG-GGTT-TTC--GGG--TTTCGG
*
5166960 GTTTCGGGTTTCGGGTTTCTT
55 GTTTCGGGTTTCGGG-TTATT
* * * ****
5166981 CGGGTTTTCGGGTTTCGGTTTC-GAGTTTCGGGGTTTC-GG-TTTCGGGGGGGGGGGTTTCGGGT
1 CGGG-TTTCGGGTTTCGGGTTCGGGGTTTCGGGTTTTCGGGTTTTC-GGGTTTCGGGTTTCGGGT
*
5167043 TTCAGGAGTT-TC
64 TTC-GG-GTTATT
* *
5167055 CAGGAGTTTCCAGGGTTTCGGGTT-GCGGGTTTCGGGATTTCGGG-TTTCGGGGTTCGGG-TT--
1 C-GG-GTTT-C-GGGTTTCGGGTTCG-GGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGGTTTCG
* *
5167115 --TTACGGGGT-TT
61 GGTTTCGGGTTATT
* * * *
5167126 CAGAGGTTTAGGGTTTCCGGGGTTC-GGGTATTC-GG-TTTCGGG-ATTCAGGGGTTCGGGAGTT
1 C-G-GGTTTCGGGTTT-C-GGGTTCGGGGT-TTCGGGTTTTCGGGTTTTC-GGGTTTCGGG-TTT
* *
5167187 CGGGATTTAGGG-T-GT
59 CGGG-TTTCGGGTTATT
* * *
5167202 CGGGTTTCCGGG-TTCGGTTTC-GGGTGTCGGGTTTTACCGGG-TTCCGGGTTTCGGGTTTCGGG
1 CGGGTTT-CGGGTTTCGGGTTCGGGGTTTCGGGTTTT--CGGGTTTTCGGGTTTCGGGTTTCGGG
5167264 TTTCAGGGTT-TAT
63 TTTC-GGGTTAT-T
* * *
5167277 CGAAGGTTTCCCGGGTTTATCGGGTTTCGCGGTTTC-GG-TTTCGGG-TTTCGGG-TGCGGG-GT
1 CG--GGTTT--CGGG-TT-TCGGG-TTCGGGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGGTTT
* *
5167337 AGGGTTTCGGG-TCTT
59 CGGGTTTCGGGTTATT
* * *
5167352 CGGGTTTCCGGGTTTC---TTAC-GGGTTTCCGGGTTTCCGGGTATGCGGGATTTCGGGTATTCG
1 CGGGTTT-CGGGTTTCGGGTT-CGGGGTTT-CGGGTTTTCGGGTTTTCGGG-TTTCGGGT-TTCG
5167413 GGTTTTC-GG-T-TT
61 GG-TTTCGGGTTATT
* * *
5167425 CGGGTTTTCGGGTCTTCGGGTTCGGAGTTTC-GG-TGTC-GGTTAATCAGGAGTTTCCGGGTGTT
1 CGGG-TTTCGGGT-TTCGGGTTCGGGGTTTCGGGTTTTCGGGTT-TTC-GG-GTTT-CGGGT-TT
5167487 CGGGTTTCGGG-T-TT
59 CGGGTTTCGGGTTATT
* * * *
5167501 CGGG-TTCAGGGTGATCGAGGTTCTGGGTTTTCGGGTTGTCCGGGTTTACGGGTTTCGGGTATTC
1 CGGGTTTC-GGGT-TTCG-GGTTC-GGGGTTTCGGGTT-TTCGGGTTTTCGGGTTTCGGGT-TTC
5167565 GGGTTATCGGG-T-TT
60 GGGTT-TCGGGTTATT
* ** * * *
5167579 CGGGTCTTC-GGTTTTGTTTTCAGGAGTTTCGGG--TTCGGGTTATCGGGTTT-TGGTTATCGGG
1 CGGGT-TTCGGGTTTCGGGTTC-GGGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGGTT-TCGGG
5167640 -TTCGGGTTTATGAT
63 TTTCGGG-TTAT--T
* *
5167654 CGGGATGTTC-GGTTTC--GTTCAGGGTTTCGGG-TTTCGGG-TTTCGGGTTACGGGTTTTCGGG
1 CGGG-T-TTCGGGTTTCGGGTTCGGGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGG-TTTCGGG
5167714 TTTCAGGG-T-TT
63 TTTC-GGGTTATT
* *
5167725 CGGGTTTCGGGTTTTCGGGGTTTC-GGGTTTCGGGATTT-GGGTTATCCGGGTTTC
1 CGGGTTTCGGG-TTTC-GGG-TTCGGGGTTTCGGGTTTTCGGGTT-TTCGGGTTTC
5167779 TCTCTACTCA
Statistics
Matches: 1709, Mismatches: 220, Indels: 506
0.70 0.09 0.21
Matches are distributed among these distances:
66 7 0.00
67 2 0.00
68 5 0.00
69 28 0.02
70 36 0.02
71 68 0.04
72 173 0.10
73 177 0.10
74 168 0.10
75 141 0.08
76 181 0.11
77 169 0.10
78 142 0.08
79 104 0.06
80 71 0.04
81 63 0.04
82 49 0.03
83 32 0.02
84 33 0.02
85 18 0.01
86 10 0.01
87 6 0.00
88 9 0.01
89 17 0.01
ACGTcount: A:0.06, C:0.15, G:0.40, T:0.39
Consensus pattern (74 bp):
CGGGTTTCGGGTTTCGGGTTCGGGGTTTCGGGTTTTCGGGTTTTCGGGTTTCGGGTTTCGGGTTT
CGGGTTATT
Found at i:5166649 original size:25 final size:25
Alignment explanation
Indices: 5166621--5166670 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
5166611 ATCAGGGTAT
5166621 TTCGACGTTT-CGGGTTTCGGGTTTC
1 TTCG-CGTTTACGGGTTTCGGGTTTC
*
5166646 TTCGGGTTTACGGGTTTCGGGTTTC
1 TTCGCGTTTACGGGTTTCGGGTTTC
5166671 GGGTTTCGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.04, C:0.18, G:0.34, T:0.44
Consensus pattern (25 bp):
TTCGCGTTTACGGGTTTCGGGTTTC
Found at i:5167838 original size:7 final size:7
Alignment explanation
Indices: 5167826--5167995 Score: 134
Period size: 7 Copynumber: 23.7 Consensus size: 7
5167816 GCGCGCGCTC
5167826 CCCCCCT
1 CCCCCCT
5167833 CCCCCCT
1 CCCCCCT
*
5167840 CCACCCCGA
1 CC-CCCC-T
5167849 CCCCCCT
1 CCCCCCT
5167856 CCACCACCT
1 CC-CC-CCT
5167865 CCCACCC-
1 CCC-CCCT
** * *
5167872 AACCACG
1 CCCCCCT
5167879 CCCCCCT
1 CCCCCCT
5167886 CCCCCCAT
1 CCCCCC-T
5167894 -CCCCCT
1 CCCCCCT
5167900 CCACCCCT
1 CC-CCCCT
5167908 CCCCCC-
1 CCCCCCT
* *
5167914 ACACCCT
1 CCCCCCT
5167921 CCCCCCT
1 CCCCCCT
5167928 CCCCCCT
1 CCCCCCT
5167935 CCCCCCT
1 CCCCCCT
5167942 CACCCCCT
1 C-CCCCCT
5167950 CCCCCCT
1 CCCCCCT
5167957 CCCCCC-
1 CCCCCCT
*
5167963 CCCTCC-
1 CCCCCCT
*
5167969 CCCCCCA
1 CCCCCCT
*
5167976 CCCGGCCT
1 CCC-CCCT
5167984 CCCCCCT
1 CCCCCCT
5167991 CCCCC
1 CCCCC
5167996 TCACAC
Statistics
Matches: 132, Mismatches: 18, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
6 17 0.13
7 74 0.56
8 33 0.25
9 8 0.06
ACGTcount: A:0.08, C:0.79, G:0.02, T:0.10
Consensus pattern (7 bp):
CCCCCCT
Found at i:5167984 original size:17 final size:15
Alignment explanation
Indices: 5167827--5167989 Score: 104
Period size: 16 Copynumber: 10.8 Consensus size: 15
5167817 CGCGCGCTCC
5167827 CCCCCTCCCCCCTCCA
1 CCCCCTCCCCCC-CCA
**
5167843 CCCCGACCCCCCTCCA
1 CCCCCTCCCCCC-CCA
* * *
5167859 CCACCTCCCACCCAA
1 CCCCCTCCCCCCCCA
* *
5167874 CCACGC-CCCCCTCC-
1 CC-CCCTCCCCCCCCA
* *
5167888 CCCCATCCCCCTCCA
1 CCCCCTCCCCCCCCA
5167903 -CCCCT--CCCCCCA
1 CCCCCTCCCCCCCCA
* *
5167915 CACCCTCCCCCCTC-
1 CCCCCTCCCCCCCCA
*
5167929 CCCCCTCCCCCCTCA
1 CCCCCTCCCCCCCCA
*
5167944 CCCCCTCCCCCCTCCCC
1 CCCCCT-CCCCC-CCCA
5167961 CCCCCTCCCCCCCCA
1 CCCCCTCCCCCCCCA
5167976 CCCGGCCTCCCCCC
1 CCC--CCTCCCCCC
5167990 TCCCCCTCAC
Statistics
Matches: 114, Mismatches: 22, Indels: 21
0.73 0.14 0.13
Matches are distributed among these distances:
12 6 0.05
13 5 0.04
14 27 0.24
15 26 0.23
16 33 0.29
17 17 0.15
ACGTcount: A:0.09, C:0.79, G:0.02, T:0.10
Consensus pattern (15 bp):
CCCCCTCCCCCCCCA
Done.