genome.fa.s894.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold894
Parameters: 2 7 7 80 10 50 1000
Length:  24977

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5703--5857	52	3.0	52	88	1	222	28	16	20	34	1.94
5896--5978	13	5.5	13	70	27	58	33	18	12	36	1.87
5896--5997	32	3.2	32	87	4	145	33	17	12	36	1.88
8426--8451	13	2.0	13	100	0	52	38	15	15	30	1.88
8404--8471	33	2.1	32	91	8	111	33	16	14	35	1.89
8540--8564	13	1.9	13	100	0	50	36	16	16	32	1.90
8574--8615	20	2.2	20	91	4	68	28	11	23	35	1.91
9588--9789	79	2.6	79	80	4	212	26	15	32	25	1.96
9746--9819	28	2.7	26	85	8	85	21	18	35	24	1.96
9667--9999	107	3.1	108	73	14	284	29	13	29	27	1.94
9805--9973	52	3.3	49	81	5	176	31	12	26	29	1.93
9840--9973	50	2.6	50	82	4	153	32	13	26	27	1.94
9906--10080	80	2.2	80	86	6	241	30	17	28	24	1.97
10039--10114	27	2.8	27	86	6	100	25	18	31	25	1.97
12637--12767	19	7.8	19	72	27	136	35	15	12	37	1.85
12659--12747	13	5.9	13	72	27	70	33	15	13	37	1.87
12640--12766	32	4.0	32	100	0	254	34	15	12	37	1.86
12823--12876	21	2.6	21	93	0	90	37	18	11	33	1.86
19229--19262	3	11.3	3	93	0	59	38	0	32	29	1.58
19776--19827	21	2.5	20	78	9	59	67	11	5	15	1.40
21131--21185	27	2.0	27	100	0	110	40	21	14	23	1.90
23407--23453	7	6.7	7	77	18	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23422--23469	20	2.4	21	83	13	66	33	0	2	64	1.05
23691--23765	24	3.1	24	81	12	66	50	0	0	49	1.00
23773--23836	20	3.3	19	81	14	69	25	1	1	71	1.03
23783--23839	10	5.4	10	76	19	53	26	0	0	73	0.83
23795--23834	12	3.4	12	82	6	55	25	0	0	75	0.81

Tables:   1

The End!