Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3883850
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 144036 characters in sequence are not A, C, G, or T
File 20 of 24
Found at i:2991290 original size:21 final size:21
Alignment explanation
Indices: 2991249--2991292 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
2991239 TTCCCCTTTA
* *
2991249 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
2991270 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
2991291 TC
1 TC
2991293 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:2993113 original size:13 final size:13
Alignment explanation
Indices: 2993095--2993133 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2993085 ATAATCACCC
2993095 TGTATCGATACAA
1 TGTATCGATACAA
*
2993108 TGTATCGATATAA
1 TGTATCGATACAA
2993121 TGTATCGATACAA
1 TGTATCGATACAA
2993134 AGAAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2995230 original size:15 final size:15
Alignment explanation
Indices: 2995210--2995240 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2995200 ATTTCGTTTG
*
2995210 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2995225 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2995240 G
1 G
2995241 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2997074 original size:21 final size:21
Alignment explanation
Indices: 2997045--2997089 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2997035 AAGTTTTCAT
*
2997045 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
2997065 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
2997087 TTT
1 TTT
2997090 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:2999318 original size:13 final size:13
Alignment explanation
Indices: 2999300--2999325 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2999290 CAATTTTTTG
2999300 TGTATCGATACAT
1 TGTATCGATACAT
2999313 TGTATCGATACAT
1 TGTATCGATACAT
2999326 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3003845 original size:21 final size:21
Alignment explanation
Indices: 3003821--3003897 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
3003811 ATTTTATCCA
3003821 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
3003842 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
* *
3003863 AATGTATCGATACA-TTCTACA
1 AATGTATCGATACATTTGTA-G
3003884 AATGTATCGATACA
1 AATGTATCGATACA
3003898 GGGTCCCAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:3003957 original size:19 final size:19
Alignment explanation
Indices: 3003933--3004000 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
3003923 AATTCAACAA
3003933 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
3003952 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
3003967 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
3003984 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
3004001 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:3003972 original size:13 final size:13
Alignment explanation
Indices: 3003954--3003978 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3003944 ACATAAGTTT
3003954 TGTATCGATACAA
1 TGTATCGATACAA
3003967 TGTATCGATACA
1 TGTATCGATACA
3003979 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3003976 original size:32 final size:32
Alignment explanation
Indices: 3003935--3003997 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3003925 TTCAACAATT
*
3003935 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
3003967 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
3003998 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:3006468 original size:51 final size:51
Alignment explanation
Indices: 3006401--3006738 Score: 177
Period size: 51 Copynumber: 6.4 Consensus size: 51
3006391 AATTCTCCAC
* * * * *
3006401 AATCGGTGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCTAT
* * *
3006452 AATCGGGGATACTCCAACTCCGAGTTTATTTCCAAAAAACACCAA-TTTCTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCC--AAAACACCAATTTTC-T-AT
* * * ** * * ***
3006506 AATCGGGGACACTCCAACCCCG--TTAATCATCGGGGATACTCCAA-CCCCGT-T
1 AATCGGGGATACTCCAACCCCGATTTTAT-TTC--CAAAACACCAATTTTC-TAT
* * * ** *
3006557 ACTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGACTTTTC-AT
1 A-AT-C--GGGGATACTCCAACCCCGATTTTATTTCCAAAACA-CCAATTTTCTAT
* * *
3006612 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAAGTTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAA-TTTT-CTAT
* * * *
3006665 AATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAATACCAATTTT-TCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTCT-AT
* *
3006717 AATCGAGGACACTCCAACCCCG
1 AATCGGGGATACTCCAACCCCG
3006739 TTACTTCCGA
Statistics
Matches: 212, Mismatches: 54, Indels: 41
0.69 0.18 0.13
Matches are distributed among these distances:
50 1 0.00
51 66 0.31
52 28 0.13
53 57 0.27
54 33 0.16
55 20 0.09
56 3 0.01
57 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (51 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCTAT
Found at i:3006577 original size:28 final size:27
Alignment explanation
Indices: 3006510--3006582 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
3006500 CTTCACAATC
* **
3006510 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
3006537 GGGGATACTCCAACCCCGTTACTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
3006565 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
3006583 ACTTTATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.23, C:0.37, G:0.22, T:0.18
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:3006829 original size:79 final size:79
Alignment explanation
Indices: 3006708--3006924 Score: 229
Period size: 79 Copynumber: 2.7 Consensus size: 79
3006698 AAAAATACCA
* * * * * * * *
3006708 ATTTTTCACAATCGAGGACACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTA
1 ATTTCTCACAACCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGACTTTA
*
3006773 TTCCCAAGAT-ATTG
66 TTCCCAA-ATCATCG
* ** * *
3006787 ATTTCTCATAATTGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTT
1 ATTTCTCACAACCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGACTTTA
** *
3006852 TTTTCTAATCATCG
66 TTCCCAAATCATCG
* * * *
3006866 ATTTCTCACAACCGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAATCCCG
1 ATTTCTCACAACCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCG
3006925 TTATTATCTC
Statistics
Matches: 115, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
78 2 0.02
79 113 0.98
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.30
Consensus pattern (79 bp):
ATTTCTCACAACCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGACTTTA
TTCCCAAATCATCG
Found at i:3009956 original size:4 final size:4
Alignment explanation
Indices: 3009947--3009976 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
3009937 AAACAAAACA
3009947 AAAT AAAT AAAT -AAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
3009977 CAACTCAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:3009967 original size:15 final size:15
Alignment explanation
Indices: 3009947--3009975 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3009937 AAACAAAACA
3009947 AAATAAATAAATAAT
1 AAATAAATAAATAAT
3009962 AAATAAATAAATAA
1 AAATAAATAAATAA
3009976 ACAACTCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAAATAAATAAT
Found at i:3011504 original size:232 final size:233
Alignment explanation
Indices: 3011097--3011524 Score: 680
Period size: 232 Copynumber: 1.8 Consensus size: 233
3011087 TTTTAAAAAA
* * * * * *
3011097 ACTTCGGACGATCCAAAGGGTCAAAGCATGCTCGACTTAAAATAAAAGATGATGGTCAATATGCA
1 ACTTCGGACAATCCAAAGAGCCAAAGCATACTCGACTTAAAATAAAAGAGGATAGTCAATATGCA
*
3011162 AGGGTGAAAAACTATCAGACGAATCGCTCATCCTATAAGTCTCGGGTGGTCATTACGAAATGACC
66 AGGATGAAAAACTATCAGACGAATCGCTCATCCTATAAGTCTCGGGTGGTCATTACGAAATGACC
* *
3011227 ATGAACTTGGAGTCACCACCAATCATTTCGGGCTAGGCATGATCGGATGCCTATTGAAACCTATG
131 ATGAACTTGGAGTCACCACCAATCATTTCGAGCTAGGCATGATCGGATGCCTATTAAAACCTATG
3011292 TTTTGTGTCGCAACGTGCGCTCGGCCTTTTCTACGAGT
196 TTTTGTGTCGCAACGTGCGCTCGGCCTTTTCTACGAGT
*
3011330 ACTTCGGACAATCCAAAGAGCCAAAGC-TCACTCGACTT-AAATAAAAGGGGATAGTCAATATGC
1 ACTTCGGACAATCCAAAGAGCCAAAGCAT-ACTCGACTTAAAATAAAAGAGGATAGTCAATATGC
* * * * *
3011393 GAGGATGAAAGACTATCGGACGAATCGCTCGTCCTATAAGTCTCGGGTGGTCATTACGAGATGAC
65 AAGGATGAAAAACTATCAGACGAATCGCTCATCCTATAAGTCTCGGGTGGTCATTACGAAATGAC
* *
3011458 CATGAACTTGGAGTTACCACCGATCATTTCGAGCTAGGCATGATCGGATGCCTATTAAAACCTAT
130 CATGAACTTGGAGTCACCACCAATCATTTCGAGCTAGGCATGATCGGATGCCTATTAAAACCTAT
3011523 GT
195 GT
3011525 CTTGAGTCAC
Statistics
Matches: 177, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
232 145 0.82
233 32 0.18
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (233 bp):
ACTTCGGACAATCCAAAGAGCCAAAGCATACTCGACTTAAAATAAAAGAGGATAGTCAATATGCA
AGGATGAAAAACTATCAGACGAATCGCTCATCCTATAAGTCTCGGGTGGTCATTACGAAATGACC
ATGAACTTGGAGTCACCACCAATCATTTCGAGCTAGGCATGATCGGATGCCTATTAAAACCTATG
TTTTGTGTCGCAACGTGCGCTCGGCCTTTTCTACGAGT
Found at i:3012422 original size:52 final size:51
Alignment explanation
Indices: 3012361--3012470 Score: 166
Period size: 52 Copynumber: 2.1 Consensus size: 51
3012351 GGGGTTGGAA
*
3012361 TATCCCCGATTATGAGAAATCAATATTTTAGAAATAAGGCCAGGGGCTGAAG
1 TATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCC-GGGGCTGAAG
* * * *
3012413 TATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAG
1 TATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGGGGCTGAAG
3012464 TATCCCC
1 TATCCCC
3012471 TCAGAAATAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
51 15 0.28
52 38 0.72
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (51 bp):
TATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGGGGCTGAAG
Found at i:3012487 original size:28 final size:28
Alignment explanation
Indices: 3012453--3012526 Score: 132
Period size: 28 Copynumber: 2.6 Consensus size: 28
3012443 GAAATAAAGC
3012453 CGGGGTTGGAGTATCCCCTC-AGAAATAA
1 CGGGGTTGGAGTATCCCCTCGA-AAATAA
3012481 CGGGGTTGGAGTATCCCCTCGAAAATAA
1 CGGGGTTGGAGTATCCCCTCGAAAATAA
3012509 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
3012527 GATTATGAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAA
Found at i:3012568 original size:79 final size:79
Alignment explanation
Indices: 3012481--3012656 Score: 262
Period size: 79 Copynumber: 2.2 Consensus size: 79
3012471 TCAGAAATAA
* * *
3012481 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCTAGAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCGATGT
*
3012546 TTTAGAAATGAAAT
66 TTTAGAAATAAAAT
* * * *
3012560 TGGGGTTGGAGTATCCCCTAGAAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAGTCGGTGT
1 CGGGGTTGGAGTATCCCCTAGAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCGATGT
*
3012625 TTTGGAAATAAAAT
66 TTTAGAAATAAAAT
*
3012639 CGGAGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
3012657 GATTGTGGAG
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 86 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTAGAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCGATGT
TTTAGAAATAAAAT
Found at i:3012708 original size:51 final size:51
Alignment explanation
Indices: 3012592--3012711 Score: 170
Period size: 51 Copynumber: 2.4 Consensus size: 51
3012582 AAATAACGGG
* * *
3012592 GTTGGAGTATCCCCAATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTAGAAATAAAATCAGA
* * *
3012643 GTTGGAGTATCCCCGATTGTGGAGAA-TGGGTGTTTTAGAAATAAAATTAGA
1 GTTGGAGTATCCCCGATTGT-GAAAAGTCGGTGTTTTAGAAATAAAATCAGA
3012694 GTTGGAGTATCCCCGATT
1 GTTGGAGTATCCCCGATT
3012712 AAGAAAAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
51 58 0.94
52 4 0.06
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAGTCGGTGTTTTAGAAATAAAATCAGA
Found at i:3015081 original size:21 final size:21
Alignment explanation
Indices: 3015057--3015097 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3015047 AACTTCCTAG
*
3015057 ATGTATTGATACATTTCCTTA
1 ATGTATCGATACATTTCCTTA
3015078 ATGTATCGATACATTTCCTT
1 ATGTATCGATACATTTCCTT
3015098 GGTAGTAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (21 bp):
ATGTATCGATACATTTCCTTA
Found at i:3015146 original size:19 final size:20
Alignment explanation
Indices: 3015122--3015175 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
3015112 AGCGACACAT
*
3015122 TGTATCGATACAAAACT-TA
1 TGTATCGATACAAAACTGAA
**
3015141 TGTATCGATACATTTACTGAA
1 TGTATCGATACA-AAACTGAA
3015162 TGTATCGATACAAA
1 TGTATCGATACAAA
3015176 TTATTGAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
TGTATCGATACAAAACTGAA
Found at i:3016051 original size:61 final size:61
Alignment explanation
Indices: 3015975--3016934 Score: 928
Period size: 61 Copynumber: 16.4 Consensus size: 61
3015965 AAAATAAAAT
* * ** *
3015975 GCATCCTACTCTTTAAGGACTAAAAAATGCCACCAA-TTCATGTGGGCTTTGAAAAGGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTT-GTGTGGGCTTTGAAAAGGAAAG
** * * * *** *
3016036 GTGTCCTGCTTTTTAAGGACTGCAAGGCGCCACCAACTTGTGTGGGCTTTGCAAAGGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
** *
3016097 GCATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAA-
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAG-GAAAG
* *
3016158 GCATACTGCTCTTTGAGGACTCGAAAATGCCACCAACTTGTGTGGGCTTT-AAAA-G--A-
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* ***
3016214 -CGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTAACGTGGGCTTT------GAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* * *
3016268 GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* * **
3016329 ACATCCTGCTTTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-ACAAAGAGAAA-
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGA-AAAG-GAAAG
*
3016390 GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* * * * * *
3016451 GCGTCCTACTTTTTGAGGACT-GAAAGGTGCCACCAACTTGTATGGGCTTTGCAAAGAGAAA-
1 GCATCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAG-GAAAG
*
3016512 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGG---T
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* *
3016569 G--TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGG---T
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
*
3016624 G--TCCTGCTCTTTGAGAACTGGAAAATGCCACCAACTTGTGTGGGCTTT------GAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* *
3016677 GCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTT----A--AAAG
1 GCATCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* * * * * *
3016732 GCGTCTTACTCTTTGAGGACTTGAAAGGTGCCACCAAATTGTGTGGGCTTTG-AAAGGAGAAG
1 GCATCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAAGGA-AAG
* * * **
3016794 GCGTCCTACTCTTTGAGGACT-GAAAGTGCCACCGGCTTGTGTGGGCTTT----A--AAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
* * *
3016848 GCATCCTGCTCTTTGAGGGCTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGG-AAAG
* *
3016909 GCATCCTACTTTTTGAGGACT-GAAAA
1 GCATCCTGCTCTTTGAGGACTGGAAAA
3016935 GTTGAAGGAG
Statistics
Matches: 778, Mismatches: 79, Indels: 85
0.83 0.08 0.09
Matches are distributed among these distances:
50 1 0.00
51 1 0.00
53 2 0.00
54 22 0.03
55 280 0.36
56 26 0.03
57 2 0.00
58 2 0.00
59 2 0.00
60 40 0.05
61 358 0.46
62 42 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (61 bp):
GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAG
Found at i:3016651 original size:354 final size:342
Alignment explanation
Indices: 3016064--3016903 Score: 1203
Period size: 354 Copynumber: 2.4 Consensus size: 342
3016054 ACTGCAAGGC
* * *
3016064 GCCACCAACTTGTGTGGGCTTTGCAAAGGAAAGGCATCCTGCTCTTTGAGGACTGGAAGGTGCCA
1 GCCACCAACTTGTGTGGGCTTTG-AAAGGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCA
* *
3016129 CCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATACTGCTCTTTGAGGACTCGAAAATGCCACCAA
65 CCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAA
* *
3016194 CTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTAACGTGGG
130 CTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTAACGTGGG
*
3016259 CTTTGAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAAG
195 CTTTGAAAGGCGTCCTGCTCTTTGAGAACTAGAAAATGCCACCAACTCGTGTGGGCTTTG-AAA-
*
3016324 GAAAGACATCCTGCTTTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTACAAAGAGA
258 G---G-CATCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT--AAA-AG-
3016388 AAGCATCCTACTCTTTGAGGACTGGAAA-AT
314 --GCATCCTACTCTTTGAGGACTGGAAAGAT
*
3016418 GCCACCAACTTGTGTGGGCTTTGAAAAGGAAAGGCGTCCTACTTTTTGAGGACTGAAAGGTGCCA
1 GCCACCAACTTGTGTGGGCTTTG-AAAGGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCA
*
3016483 CCAACTTGTATGGGCTTTGCAAAGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAA
65 CCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAA
* * ***
3016548 CTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGG
130 CTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTAACGTGGG
* * *
3016613 CTTTGAAAGGTGTCCTGCTCTTTGAGAACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
195 CTTTGAAAGGCGTCCTGCTCTTTGAGAACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGG
* * *
3016678 CGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCTTACTC
260 CATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTC
* *
3016743 TTTGAGGACTTGAAAGGT
325 TTTGAGGACTGGAAAGAT
*
3016761 GCCACCAAATTGTGTGGGCTTTGAAAGGAGAAGGCGTCCTACTCTTTGAGGACTGAAA-GTGCCA
1 GCCACCAACTTGTGTGGGCTTTGAAAGGA-AAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCA
** * * *
3016825 CCGGCTTGTGTGGGCTTT--AAA-AG---GCATCCTGCTCTTTGAGGGCTGGGAAGTGCCACCAA
65 CCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAA
3016884 CTTGTGTGGGCTTTAAAAGG
130 CTTGTGTGGGCTTTAAAAGG
3016904 AAAAGGCATC
Statistics
Matches: 449, Mismatches: 34, Indels: 24
0.89 0.07 0.05
Matches are distributed among these distances:
336 52 0.12
339 2 0.00
340 3 0.01
342 50 0.11
343 50 0.11
345 2 0.00
346 3 0.01
348 42 0.09
349 5 0.01
352 1 0.00
353 3 0.01
354 236 0.53
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (342 bp):
GCCACCAACTTGTGTGGGCTTTGAAAGGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCAC
CAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAAC
TTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTAACGTGGGC
TTTGAAAGGCGTCCTGCTCTTTGAGAACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGC
ATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCT
TTGAGGACTGGAAAGAT
Found at i:3016903 original size:55 final size:55
Alignment explanation
Indices: 3016032--3016903 Score: 850
Period size: 55 Copynumber: 15.1 Consensus size: 55
3016022 TTTGAAAAGG
* * * * ***
3016032 AAAGGTGTCCTGCTTTTTAAGGACTGCAAGGCGCCACCAACTTGTGTGGGCTTTGCAAA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----A
* **
3016091 GGAAAGGCATCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCA
1 --AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--A
* * *
3016150 AAGAGAAAGCATACTGCTCTTTGAGGACTCGAAAATGCCACCAACTTGTGTGGGCTTTA
1 AA-AG---GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* *** *
3016209 AAAGACGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTAACGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* *
3016264 AAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-A
* * **
3016320 AAAGGAAAGACATCCTGCTTTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTACA
1 AAA-G---G-CGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT--A
* *
3016382 AAGAGAAAGCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAA
1 AA-AG---GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----A
* * * *
3016445 GGAAAGGCGTCCTACTTTTTGAGGACT-GAAAGGTGCCACCAACTTGTATGGGCTTTGCA
1 --AAAGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT--A
* *
3016504 AAGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
1 AA-AG---GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* * *
3016563 AAAGGTGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* * *
3016618 AAAGGTGTCCTGCTCTTTGAGAACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
*
3016673 AAAGGCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGCGTCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTA
* * * * *
3016728 AAAGGCGTCTTACTCTTTGAGGACTTGAAAGGTGCCACCAAATTGTGTGGGCTTTGAAA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT---A
* * **
3016787 GGAGAAGGCGTCCTACTCTTTGAGGACT-GAAAGTGCCACCGGCTTGTGTGGGCTTTA
1 --A-AAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
* * * *
3016844 AAAGGCATCCTGCTCTTTGAGGGCTGGGAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
3016899 AAAGG
1 AAAGG
3016904 AAAAGGCATC
Statistics
Matches: 706, Mismatches: 73, Indels: 70
0.83 0.09 0.08
Matches are distributed among these distances:
54 22 0.03
55 298 0.42
56 28 0.04
57 6 0.01
58 8 0.01
59 8 0.01
60 26 0.04
61 268 0.38
62 35 0.05
63 3 0.00
64 2 0.00
65 2 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (55 bp):
AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
Found at i:3017931 original size:19 final size:19
Alignment explanation
Indices: 3017909--3017948 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
3017899 TTTTTTTCTC
3017909 TTTTCTCTTTGTTTTTTGT
1 TTTTCTCTTTGTTTTTTGT
* * *
3017928 TTTTTTGTTTTTTTTTTGT
1 TTTTCTCTTTGTTTTTTGT
3017947 TT
1 TT
3017949 GTTTTTTGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.85
Consensus pattern (19 bp):
TTTTCTCTTTGTTTTTTGT
Found at i:3017936 original size:15 final size:16
Alignment explanation
Indices: 3017916--3017956 Score: 68
Period size: 15 Copynumber: 2.7 Consensus size: 16
3017906 CTCTTTTCTC
3017916 TTTGTTTTTTGTTTT-
1 TTTGTTTTTTGTTTTG
3017931 TTTGTTTTTT-TTTTG
1 TTTGTTTTTTGTTTTG
3017946 TTTGTTTTTTG
1 TTTGTTTTTTG
3017957 AAAAAGAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (16 bp):
TTTGTTTTTTGTTTTG
Found at i:3017941 original size:11 final size:11
Alignment explanation
Indices: 3017927--3017956 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
3017917 TTGTTTTTTG
3017927 TTTTTTTGTTT
1 TTTTTTTGTTT
3017938 TTTTTTTGTTT
1 TTTTTTTGTTT
*
3017949 GTTTTTTG
1 TTTTTTTG
3017957 AAAAAGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:3030479 original size:51 final size:51
Alignment explanation
Indices: 3030370--3030488 Score: 159
Period size: 51 Copynumber: 2.4 Consensus size: 51
3030360 GTGAAAATAA
* *
3030370 TGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAGGC
1 TGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGC
* * * * * *
3030421 CGAGGTTGAAGTATCCCCGATTGTGAAAAATCAATATTTTGGAAATAAAGT
1 TGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGC
3030472 TGGGGTTGGAGTA-CCCC
1 TGGGGTTGGAGTATCCCC
3030489 TCGGAAATAA
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 4 0.07
51 53 0.93
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
TGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAGC
Found at i:3030528 original size:28 final size:28
Alignment explanation
Indices: 3030473--3030544 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
3030463 AAATAAAGTT
* *
3030473 GGGGTTGGAGTA-CCCCTCGGAAATAAC
1 GGGGTTGGAGTATCCCCTCGAAAAGAAC
*
3030500 GGGGTTGGAGTATTCCCTCGAAAAGAAC
1 GGGGTTGGAGTATCCCCTCGAAAAGAAC
3030528 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
3030545 GATTATGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 12 0.30
28 28 0.70
ACGTcount: A:0.24, C:0.21, G:0.35, T:0.21
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCTCGAAAAGAAC
Found at i:3030554 original size:106 final size:107
Alignment explanation
Indices: 3030424--3030619 Score: 261
Period size: 106 Copynumber: 1.8 Consensus size: 107
3030414 ATAAGGCCGA
* * * *
3030424 GGTTGAAGTATCCCCGATTGTGAAAAATCAATATTTTGGAAAT-AAAGTTGGGGTTGGAGTA-CC
1 GGTTGAAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATGAAA-CTGAGGTTGGAGTATCC
* **
3030487 CCTCGGAAATAACGGGGTTGGAGTATTCCCTCGAAAAGAACGG
65 CCTCGAAAATAACAAGGTTGGAGTATTCCCTCGAAAAGAACGG
* ** * *
3030530 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATGAAACTGAGGTTTGAGTATCCC
1 GGTTGAAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATGAAACTGAGGTTGGAGTATCCC
3030595 CTCGAAAATAACAAGGTTGGAGTAT
66 CTCGAAAATAACAAGGTTGGAGTAT
3030620 CCCCGATTGT
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
106 48 0.63
107 28 0.37
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (107 bp):
GGTTGAAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATGAAACTGAGGTTGGAGTATCCC
CTCGAAAATAACAAGGTTGGAGTATTCCCTCGAAAAGAACGG
Found at i:3030644 original size:79 final size:78
Alignment explanation
Indices: 3030502--3030674 Score: 206
Period size: 79 Copynumber: 2.2 Consensus size: 78
3030492 GAAATAACGG
* ** *
3030502 GGTTGGAGTATTCCCTCGAAAAGAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTT
1 GGTTGGAGTATCCCCTCGAAAAGAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTT
3030567 AGAAATGAAACTGA
66 -GAAATGAAACTGA
* * * *
3030581 GGTTTGAGTATCCCCTCGAAAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAGTCCG-TGTTT
1 GGTTGGAGTATCCCCTCGAAAAGAACAAGGTTGGAGTATCCCCGATTATGAAAAAT-CGATGTTT
* *
3030645 TGAAAATAAAATCGGA
65 TG-AAATGAAA-CTGA
3030661 -GTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3030675 GATTATGGAG
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 75 0.94
80 4 0.05
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (78 bp):
GGTTGGAGTATCCCCTCGAAAAGAACAAGGTTGGAGTATCCCCGATTATGAAAAATCGATGTTTT
GAAATGAAACTGA
Found at i:3030671 original size:51 final size:51
Alignment explanation
Indices: 3030610--3030730 Score: 165
Period size: 51 Copynumber: 2.4 Consensus size: 51
3030600 AAATAACAAG
* *
3030610 GTTGGAGTATCCCCGATTGT-GAAAAGTCCGTGTTTT-GAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGGAAAA-TCCGTGTTTTAG-AAATAAAATCGAA
* **
3030661 GTTGGAGTATCCCCGATTATGGAGAATGGGTGTTTTAGAAATAAAATCGAA
1 GTTGGAGTATCCCCGATTATGGAAAATCCGTGTTTTAGAAATAAAATCGAA
3030712 GTTGGAGTATCCCCGATTA
1 GTTGGAGTATCCCCGATTA
3030731 AGAAAAATTG
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
51 58 0.92
52 5 0.08
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGGAAAATCCGTGTTTTAGAAATAAAATCGAA
Found at i:3030718 original size:236 final size:237
Alignment explanation
Indices: 3030289--3030725 Score: 510
Period size: 236 Copynumber: 1.8 Consensus size: 237
3030279 TGGAGATAAC
* *
3030289 AACGGGGCTGGAGTATCCGCGATTATAGAAAATTGATGTTTTAAAAATAAAATCGGGGTTAGAGT
1 AACGGGGCTGGAGTATCCCCGATTATAGAAAATTGATGTTTTAAAAATAAAATCGAGGTTAGAGT
*** *
3030354 ATCCCCGTGAAAATAATGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAG
66 ATCCCCGTGAAAATAACAAGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAA
* * * * **
3030419 GCCGAGGTTGAAGTATCCCCGATTGTGAAAAATCAATATTTTGGAAATAAAGTTGGGGTTGGAGT
131 GCCGAGGTTGAAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAATCGAAGTTGGAGT
3030484 A-CCCCTCGGAAATAACGGGGTTGGAGTATTCCCTCGAAAAG
196 ATCCCCTCGGAAATAACGGGGTTGGAGTATTCCCTCGAAAAG
* * * *
3030525 AACGGGGTTGGAGTATCCCCGATTAT-GAAAAATTGATGTTTTAGAAATGAAA-CTGAGGTTTGA
1 AACGGGGCTGGAGTATCCCCGATTATAG-AAAATTGATGTTTTAAAAATAAAATC-GAGGTTAGA
* ** *
3030588 GTATCCCC-TCGAAAATAACAAGGTTGGAGTATCCCCGATTGTGA-AAAGTCCGTGTTTT-GAAA
64 GTATCCCCGT-GAAAATAACAAGGTTGGAGTATCCCCGATTATGAGAAA-TCAATATTTTAG-AA
** * * * *** *
3030650 ATAAAATCG-GAGTTGGAGTATCCCCGATTATGGAGAATGGGTGTTTTAGAAATAAAATCGAAGT
126 ATAAAGCCGAG-GTTGAAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAATCGAAGT
3030714 TGGAGTATCCCC
190 TGGAGTATCCCC
3030726 GATTAAGAAA
Statistics
Matches: 165, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
235 8 0.05
236 153 0.93
237 4 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (237 bp):
AACGGGGCTGGAGTATCCCCGATTATAGAAAATTGATGTTTTAAAAATAAAATCGAGGTTAGAGT
ATCCCCGTGAAAATAACAAGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAA
GCCGAGGTTGAAGTATCCCCGATTATGAAAAATCAATATTTTAGAAATAAAATCGAAGTTGGAGT
ATCCCCTCGGAAATAACGGGGTTGGAGTATTCCCTCGAAAAG
Found at i:3033174 original size:19 final size:20
Alignment explanation
Indices: 3033150--3033203 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
3033140 AGCGATACAT
*
3033150 TGTATCGATACAAAACT-TA
1 TGTATCGATACAAAACTGAA
**
3033169 TGTATCGATACATTTACTGAA
1 TGTATCGATACA-AAACTGAA
3033190 TGTATCGATACAAA
1 TGTATCGATACAAA
3033204 TTATTGAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
TGTATCGATACAAAACTGAA
Found at i:3034214 original size:132 final size:132
Alignment explanation
Indices: 3033977--3034224 Score: 469
Period size: 132 Copynumber: 1.9 Consensus size: 132
3033967 AAATTTACAC
*
3033977 AAAAATACATAAGAAGAAGGGACGATCATAGTGTCTCATGATTGTTTTCGATTACTGAGGCATAA
1 AAAAATACATAAGAAGAAGGGACAATCATAGTGTCTCATGATTGTTTTCGATTACTGAGGCATAA
*
3034042 TCGTGATAACAATGTTGAGACTTGATTGGATTCTGTGAGGTTTTAGAAAATTTAATATTTTGGAG
66 TCGTGATAACAATATTGAGACTTGATTGGATTCTGTGAGGTTTTAGAAAATTTAATATTTTGGAG
3034107 AT
131 AT
3034109 AAAAATACATAAGAAGAAGGGACAATCATAGTGTCTCATGATTGTTTTCGATTACTGAGGCATAA
1 AAAAATACATAAGAAGAAGGGACAATCATAGTGTCTCATGATTGTTTTCGATTACTGAGGCATAA
*
3034174 TCGTGATAACAATATTGAGACTTGATTGGATTTTGTGAGGTTTTAGAAAAT
66 TCGTGATAACAATATTGAGACTTGATTGGATTCTGTGAGGTTTTAGAAAAT
3034225 GATCTAGGGG
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 113 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.33
Consensus pattern (132 bp):
AAAAATACATAAGAAGAAGGGACAATCATAGTGTCTCATGATTGTTTTCGATTACTGAGGCATAA
TCGTGATAACAATATTGAGACTTGATTGGATTCTGTGAGGTTTTAGAAAATTTAATATTTTGGAG
AT
Found at i:3034654 original size:79 final size:79
Alignment explanation
Indices: 3034551--3034734 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 79
3034541 CAATGTTTGA
* * * *
3034551 AAATAAAAATGGGGTTAGG-GTATCCCATCGAAAACAATAGGGTTGGAGTATCAT-CGATTATGA
1 AAATAAAACTGGGGTT-GGAGTATCCCATCAAAAACAACAGGGTTAGAGTATC-TCCGATTATGA
3034614 AAAATCGA-TATTCTGG
64 AAAAT-GAGTATTCTGG
* ** * * *
3034630 AAATAAAACTGGGGTTGGATTATCCTTTTAAAAATAACGGGGTTAGAGTATCTCCGATTATGAAA
1 AAATAAAACTGGGGTTGGAGTATCCCATCAAAAACAACAGGGTTAGAGTATCTCCGATTATGAAA
* * *
3034695 AATTAGTGTTTTGG
66 AATGAGTATTCTGG
3034709 AAATAAAACTGGGGTTGGAGTATCCC
1 AAATAAAACTGGGGTTGGAGTATCCC
3034735 TGATGTGGAG
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
78 4 0.05
79 83 0.95
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (79 bp):
AAATAAAACTGGGGTTGGAGTATCCCATCAAAAACAACAGGGTTAGAGTATCTCCGATTATGAAA
AATGAGTATTCTGG
Found at i:3037052 original size:50 final size:51
Alignment explanation
Indices: 3036998--3037132 Score: 222
Period size: 50 Copynumber: 2.7 Consensus size: 51
3036988 AAAAATGCCT
* *
3036998 GAATGTATCGATAC-ATTAAGAAATGTATCGATACATCTGGGTAAAACCCA
1 GAATGTATCGATACAATGAAGAAATGTATCAATACATCTGGGTAAAACCCA
*
3037048 GAATGTATCGATACAATGAA-AAATGTATCTATACATCTGGGTAAAACCCA
1 GAATGTATCGATACAATGAAGAAATGTATCAATACATCTGGGTAAAACCCA
3037098 GAATGTATCGATACAATGAAG-AATGTATCAATACA
1 GAATGTATCGATACAATGAAGAAATGTATCAATACA
3037133 AATTGTGAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
50 76 0.95
51 4 0.05
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (51 bp):
GAATGTATCGATACAATGAAGAAATGTATCAATACATCTGGGTAAAACCCA
Found at i:3037055 original size:30 final size:30
Alignment explanation
Indices: 3037019--3037112 Score: 100
Period size: 30 Copynumber: 3.5 Consensus size: 30
3037009 TACATTAAGA
3037019 AATGTATCGATACATCTGGGTAAAACCCAG
1 AATGTATCGATACATCTGGGTAAAACCCAG
*
3037049 AATGTATCGATACA-AT--G---AA---A-
1 AATGTATCGATACATCTGGGTAAAACCCAG
*
3037069 AATGTATCTATACATCTGGGTAAAACCCAG
1 AATGTATCGATACATCTGGGTAAAACCCAG
3037099 AATGTATCGATACA
1 AATGTATCGATACA
3037113 ATGAAGAATG
Statistics
Matches: 50, Mismatches: 4, Indels: 20
0.68 0.05 0.27
Matches are distributed among these distances:
20 13 0.26
21 2 0.04
23 1 0.02
24 2 0.04
26 2 0.04
27 1 0.02
29 2 0.04
30 27 0.54
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (30 bp):
AATGTATCGATACATCTGGGTAAAACCCAG
Found at i:3039071 original size:13 final size:13
Alignment explanation
Indices: 3039053--3039079 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3039043 ACATTATGCT
3039053 TTGTATCGATACA
1 TTGTATCGATACA
3039066 TTGTATCGATACA
1 TTGTATCGATACA
3039079 T
1 T
3039080 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3039088 original size:19 final size:19
Alignment explanation
Indices: 3039063--3039118 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
3039053 TTGTATCGAT
*
3039063 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
3039082 TCATTGTATCGAT-CATGG
1 ACATTGTATCGATACATGG
3039100 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
3039119 AGATTGGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.16
19 23 0.72
20 4 0.12
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:3044129 original size:20 final size:20
Alignment explanation
Indices: 3044104--3044169 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
3044094 TACAAGCCAA
3044104 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATTTTTTG
3044124 TGTATCGATAC-A-----T-
1 TGTATCGATACAATTTTTTG
3044137 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATTTTTTG
3044157 TGTATCGATACAA
1 TGTATCGATACAA
3044170 GTTTGGCTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
14 2 0.05
19 2 0.05
20 24 0.62
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (20 bp):
TGTATCGATACAATTTTTTG
Found at i:3044142 original size:13 final size:13
Alignment explanation
Indices: 3044124--3044148 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3044114 CAATTTTTTG
3044124 TGTATCGATACAT
1 TGTATCGATACAT
3044137 TGTATCGATACA
1 TGTATCGATACA
3044149 ATTTTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3044146 original size:33 final size:33
Alignment explanation
Indices: 3044104--3044168 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
3044094 TACAAGCCAA
3044104 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATTTTTTGTGTATCGATACAT
3044137 TGTATCGATACAATTTTTTGTGTATCGATACA
1 TGTATCGATACAATTTTTTGTGTATCGATACA
3044169 AGTTTGGCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACAATTTTTTGTGTATCGATACAT
Found at i:3046971 original size:19 final size:18
Alignment explanation
Indices: 3046913--3046971 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 18
3046903 TACAAGCCAA
*
3046913 TGTATCGATACAATTTTTTAG
1 TGTATCGATACAA---TTTGG
*
3046934 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
3046953 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
3046972 CTACTGCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.03
19 19 0.58
21 12 0.36
22 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:3048558 original size:472 final size:470
Alignment explanation
Indices: 3047591--3049308 Score: 1670
Period size: 471 Copynumber: 3.6 Consensus size: 470
3047581 AGCCCTAACA
** * *
3047591 ACAAAATGAAAAAAGATCACTACTAGAATCCTTGTTTGTCCTCATTTGAGGCACAAACTTAGACT
1 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-CTCATTTGAGGCA-AAACTTAGACT
* * * *
3047656 TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCGATATCGTGTATCCT-A
64 TTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTCA
** * * *
3047720 ATGAGAAGACTATGTTTATGGTGCCTAATCTAGAAAGAATGGGGATTAGTATGAGTACTAATGTT
129 ATGAGAAGACTATGTTTATGGTGCCTAATCCCGAAAAAATGGGGACTAGTATGAGTAATAATGTT
* * ** *
3047785 TATTTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGTGAGAAAAGCTTTGCTTGCGA
194 TATATTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA
*
3047850 CACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTAGATTCCCAA-TCTTGAA
259 CACCAAAGCATCAATGTCATGTATCCTAAT-AAAGGGAATGTGTTTTAGGTTCCCAATTC-TGAA
* * * * * * *
3047913 AAT-AATGGAGTCTGTTTTGAGAATCAATGCTTGTCTTATT-TAGGTCTGAACCTGATTTTAGGA
322 AATGCAT--AGACTG-TTTGAGAATCGATGCTTGTCTTATTAAAGG-ATAAACTTGATTTTAGGA
* * * * * * *
3047976 AAATAGGGCAAAGGAAAGATATCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGA
383 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAAAGAGAA
*
3048041 GAACGCACTTATAATGCCTAATC
448 AAACGCACTTATAATGCCTAATC
* * *
3048064 TCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTGTCATTTGAGGTAAGAACTTAGACTT
1 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAA-AACTTAGACTT
* * * * * **
3048129 TACAAAAATTGGTAGGTAGAAAGCCTTTCTTGTGGAACCAAATCATCAATATCGCATATCCTCAA
65 TACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTCAA
* * * * *
3048194 -GAGAAGACTATGTTTAT-GTGCCTAATCCCGAAAAAATGGGGACTGGTTTAAGTAATCACGTTT
130 TGAGAAGACTATGTTTATGGTGCCTAATCCCGAAAAAATGGGGACTAGTATGAGTAATAATGTTT
* * * * *
3048257 CTAGTATATAAGAGACCAA-TGTTGATTCTATCAAAGATGGTGGAAAGAAAAGCTTTTCTTGCGA
195 ATATTATTTAAGAGACAAACT-TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA
* * *
3048321 CACCAAAGCATCAATGTCATGTATCTTGATAAAGGGAATGTGTTTT-GCGTTTCCAATTCTGAAA
259 CACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAG-GTTCCCAATTCTGAAA
3048385 ATGGCATAGACTGTTATGAGAAT-GATGCTTGTCTTACTTAAAGGATAAACTATGATTTTCAGGA
323 AT-GCATAGACTGTT-TGAGAATCGATGCTTGTCTTA-TTAAAGGATAAACT-TGATTTT-AGGA
* * *
3048449 AAATAGGGCAACGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCACTTATATTAATA-A-A
383 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAA-AGAGA
* *** * *
3048512 AAAATGTGTTTATAGTGCCTAATG
447 AAAACGCACTTATAATGCCTAATC
* * *
3048536 ACAAAATGAATGACGATCATTACTAGAA-CCAATATTTGTCTCATTTGAGGCGCAAACTTA-ACT
1 ACAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGC-AAAACTTAGACT
* * * *
3048599 TTATAAAAATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCC-CT
64 TTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTC-
* * **
3048663 AATGAGAAGACTATGTTTATGGTGCCTAAT-CCTAAAAAGAGTGGGGACTAGTATGAGTATTTGT
128 AATGAGAAGACTATGTTTATGGTGCCTAATCCCGAAAAA-A-TGGGGACTAGTATGAGTAATAAT
* *
3048727 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GAAAGGAAAAGCTTTTCTT
191 GTTTATATTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-GAAAAGCTTTTCTT
* * * *
3048791 GAGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTG
255 GCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAGGTTCCCAATTCTG
* * * * *
3048856 AAAAT--ATTGCAGAGTGTTTCGAAAATCGATGCTTGTCTTATTTAAGGGATGAACCTTCATTTT
320 AAAATGCA-T--AGACTGTTT-GAGAATCGATGCTTGTCTTA-TTAAAGGAT-AAACTTGATTTT
* * * *
3048919 AAGGGAAATAGGGCAAAGAAAAGA-TTACGTGCAAAAGAAAATCAACAATATCACTTATCTTAAG
379 -AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAAA
* * * * ** * *
3048983 GAGGAGAATGTGAC-TGCAGTGCCTAAGTT
443 GAGAAAAACG-CACTTATAATGCCTAA-TC
* * * * *
3049012 ACAAAATGAACGAAGATAATAACTACAATCCATTTTTGTC-CTATTTGAGGCACAAACTTA-AGC
1 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC-ATTTGAGGCA-AAACTTAGA-C
* * * ** * ** *
3049075 TTTAGAAAAATTGGT-GG-GAAATG-CTCTTCACGCGAAACC-AAG-ATAACAATGTCACGTGTC
63 TTTACAAAAATTGGTAGGAAAAAAGCCT-TTCTTGCGAAACCAAAGCAT--CAATATCGTGTATC
* * ** * * * *
3049135 CT-AAAGAG-AGACTATGTTTATAGTGCCT-ATCTTGAAAGAAA--GGGATTAGTATGACTATTC
125 CTCAATGAGAAGACTATGTTTATGGTGCCTAATCCCGAAA-AAATGGGGACTAGTATGAGTAATA
* *
3049195 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAATGGTGGAAAGAAAAGCTTTTCT
189 ATGTTTATATTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCT
* * * * *
3049259 TGCAACACCAAAGCATTAATGCCATGCATCCTAAT-GAGGAGAATGTGTTT
254 TGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGG-GAATGTGTTT
3049309 ATACTACCTA
Statistics
Matches: 1044, Mismatches: 155, Indels: 96
0.81 0.12 0.07
Matches are distributed among these distances:
468 3 0.00
469 61 0.06
470 76 0.07
471 220 0.21
472 195 0.19
473 135 0.13
474 189 0.18
475 93 0.09
476 55 0.05
477 17 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (470 bp):
ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAAACTTAGACTTT
ACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTCAAT
GAGAAGACTATGTTTATGGTGCCTAATCCCGAAAAAATGGGGACTAGTATGAGTAATAATGTTTA
TATTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
CCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAGGTTCCCAATTCTGAAAATG
CATAGACTGTTTGAGAATCGATGCTTGTCTTATTAAAGGATAAACTTGATTTTAGGAAAATAGGG
CAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAAAGAGAAAAACGCAC
TTATAATGCCTAATC
Found at i:3050085 original size:780 final size:784
Alignment explanation
Indices: 3048606--3050088 Score: 1666
Period size: 780 Copynumber: 1.9 Consensus size: 784
3048596 ACTTTATAAA
*
3048606 AATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCCTAATGAGAA
1 AATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCCTAATGAGAA
* ** * * *
3048671 GACTATGTTTATGGTGCCTAATCCTAAAAAGAGTGGGGACTAGTATGAGTATTTGTGTTTGTCTT
66 GACTACGTTTATACTGCCTAATCCTAAAAAGAGTGGGGACTAATATAAGTATTTATGTTTGTCTT
*
3048736 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGAAAGGAAAAGCTTTTCTTGAGACACCAA
131 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGAAAGGAAAAGCTTTTCTTGAGACACCAA
* * * * *
3048801 AGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATATTGC
196 AACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATGC
* * * *
3048866 AGAGTGTTTCGAAAATCGATGCTTGTCTTATTTAAGGGATGAACCTTCATTTTAAGGGAAATAGG
261 AGAGTGTTACAAAAATCGATGCTTGTCTTATTTAAGGGATGAACCTTCATTTTAAGGAAAATACG
* *
3048931 GCAAAGAAAAGATTACGTGCAAAAGAAAATCAACAATATCACTTATCTTAAGGAGGAGAATGTGA
326 GCAAAGAAAAGATTACATGCAAAAGAAAATCAACAATATCACTTATCCTAAGGAGGAGAATGTGA
* * *
3048996 CTGCAGTGCCTAAGTTACAAAATGAACGAAGATAATAACTACAATCCATTTTTGTCCTATTTGAG
391 CTACAGTGCCTAAGTTACAAAATGAAAGAAGATAATAACTACAATCCATGTTTGTCCTATTTGAG
* * * * * * * *
3049061 GCACAAACTTAAGCTTTAGAAAAATTGGTGGGAAATGCTCTTCACGCGAAACCAAGATAACAATG
456 GCACAAACTTAAGCTTTACAAAAATTGGAGGAAAAAGCTATTAACGCAAAACCAAGAT-ACAATA
* * *
3049126 TCACGTGTCCTAAAGAGAGACTATGTTTATAGTGCCTATCTTGAAAGAAAGGGATTAGTATGACT
520 TCACGTATCCTAAAGAAACACTATGTTTATAGTGCCTATCTTGAAAGAAAGGGATTAGTATGACT
* * * * *
3049191 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAATGGTGGAAAGAAAAGCTTT
585 ATTCATGATTGCCGTATTTAAGAGACAAACATTGATTCTATAAAAACGGTGGAAAGAAAAGCTTT
* *
3049256 TCTTGCAACACCAAAGCATTAATGCCATGCATCCTAATGAGGAGAATGTGTTTATACTACCTAAT
650 TCTTGCAACACCAAAGCATCAATGCCATACATCCTAATGAGGAGAATGTGTTTATACTACCTAAT
3049321 CAAAAATGAATGAAGATCAACACTAGAATCCATGTTGGCTCCTTTAAGGCACGAACTTAGAATTT
715 CAAAAATGAATGAAGATCAACACTAGAATCCATGTTGGCTCCTTTAAGGCACGAACTTAGAATTT
3049386 ACGTT
780 ACGTT
* * * * * *
3049391 AATTGGT-GGGACAAAAGCCTTTCTTGC-AGACCAAAGCATCAGTATTGTGTAT-TCTTATGCGA
1 AATTGGTCGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCCTAATGAGA
*
3049453 AGACTACGTTTATACTGCCTAATCCTGAAAAGAAG-GGGGA-TCAATATAAGTATTTAATGTTTG
65 AGACTACGTTTATACTGCCTAATCCTAAAAAG-AGTGGGGACT-AATATAAGTATTT-ATGTTTG
* * * *
3049516 TTTTA-TTAAGAGAC-AACTTTTATTCTATCAAAAATAGT-AGA-GAGAAA-CTTTTTCTTGTGA
127 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGAAAGGA-AAAGC-TTTTCTTGAGA
* * *
3049576 CACGAAAACATC-ATGTTAAGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTTAAAA
190 CACCAAAACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
* * * * *
3049640 GAATGTAGATTGTTACAAAAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT-AGGAA
255 GAATGCAGAGTGTTACAAAAATCGATGCTTGTCTTATTTAAGGGATGAACCTTCATTTTAAGGAA
* **** ** * *
3049704 AATACGGCAAAGAAAAGATTTCCATTTGGAAGAAAATC-ATTATA-CATTTATACCTAATGAGGA
320 AATACGGCAAAGAAAAGA-TTACATGCAAAAGAAAATCAACAATATCACTTAT-CCTAAGGAGGA
* * * * * *
3049767 -TATGT-ACTTATAGTGCCTAA-TT-CAAAATGAAAGAAGATCATTACTAGAATCCATGTTTG-G
383 GAATGTGAC-TACAGTGCCTAAGTTACAAAATGAAAGAAGATAATAACTACAATCCATGTTTGTC
* *
3049827 CTGATTTGAGGCACGAACTT-AGACTTTACAAAAA-TGGCAAGGTAAAAAGAC-ATTAATTTGCA
447 CT-ATTTGAGGCACAAACTTAAG-CTTTACAAAAATTGG--AGG-AAAAAG-CTATTAA--CGCA
* * *
3049889 AAACCAAAGCAT-CAATATCTATGTATCGCT-AGGAAACACTATGTTTATGGTGGCCCTAATCTT
504 AAACC-AAG-ATACAATATC-ACGTATC-CTAAAGAAACACTATGTTTATAGT-G-CCT-ATCTT
* * * *
3049952 GAAAAGAATA-GGATTGAGTATGAGTA-TCCTGATTGCCGTATCTT-AGAGGCACACATTGATTC
562 G-AAAGAA-AGGGATT-AGTATGACTATTCATGATTGCCGTAT-TTAAGAGACAAACATTGATTC
* * * *
3050014 TATCAAAAACGGTGG-AAGATAAGCTTTTCTTGC-ACA-CAAAG-A-CAATGTCTTATATCCT-A
623 TAT-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGCCATACATCCTAA
3050073 TGAAGG-GAATGTGTTT
687 TG-AGGAGAATGTGTTT
3050089 TTTGGTTTCC
Statistics
Matches: 581, Mismatches: 87, Indels: 65
0.79 0.12 0.09
Matches are distributed among these distances:
775 7 0.01
776 58 0.10
777 6 0.01
778 27 0.05
779 35 0.06
780 141 0.24
781 63 0.11
782 29 0.05
783 68 0.12
784 46 0.08
785 79 0.14
786 22 0.04
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (784 bp):
AATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCCTAATGAGAA
GACTACGTTTATACTGCCTAATCCTAAAAAGAGTGGGGACTAATATAAGTATTTATGTTTGTCTT
ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGAAAGGAAAAGCTTTTCTTGAGACACCAA
AACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATGC
AGAGTGTTACAAAAATCGATGCTTGTCTTATTTAAGGGATGAACCTTCATTTTAAGGAAAATACG
GCAAAGAAAAGATTACATGCAAAAGAAAATCAACAATATCACTTATCCTAAGGAGGAGAATGTGA
CTACAGTGCCTAAGTTACAAAATGAAAGAAGATAATAACTACAATCCATGTTTGTCCTATTTGAG
GCACAAACTTAAGCTTTACAAAAATTGGAGGAAAAAGCTATTAACGCAAAACCAAGATACAATAT
CACGTATCCTAAAGAAACACTATGTTTATAGTGCCTATCTTGAAAGAAAGGGATTAGTATGACTA
TTCATGATTGCCGTATTTAAGAGACAAACATTGATTCTATAAAAACGGTGGAAAGAAAAGCTTTT
CTTGCAACACCAAAGCATCAATGCCATACATCCTAATGAGGAGAATGTGTTTATACTACCTAATC
AAAAATGAATGAAGATCAACACTAGAATCCATGTTGGCTCCTTTAAGGCACGAACTTAGAATTTA
CGTT
Found at i:3165644 original size:475 final size:470
Alignment explanation
Indices: 3164752--3166479 Score: 1905
Period size: 475 Copynumber: 3.6 Consensus size: 470
3164742 GCCCTAACAA
** * *
3164752 CAAAATGAAAAAAGATCACTACTAGAATCCTTGTTTGTCTCATTTGAGGCACAAACTTAGACTTT
1 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTT
* * * *
3164817 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCGATATCGTGTATCCTAATG
66 ACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGCGTATCCTAATG
** * * * *
3164882 AGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAATGGGGATTAGTATGAGTACTAATGTTTA
130 AGAAGACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGACTAGTATGAGTATTCATGTTTG
* * ** *
3164947 TTTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGTGAGAAAAGCTTTGCTTGCGACA
195 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
*
3165012 CCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTAGATTCCCAA-TCTTGAAAA
260 CCAAAGCATCAATGTCATGTATCCTAAT-AAAGGGAATGTGTTTTAGGTTCCCAATTC-TGAAAA
* * * * *
3165075 T-AATGGAGTCTGTTTTGAGAATCAATGCTTGTCTTATTTAAGGTCTGAACCTTGATTTTAGGAA
323 TGCAT--AGACTG-TTTGAGAATCGATGCTTGTCTTATTAAAGG-ATGAACCTTGATTTTAGGAA
* * * * * *
3165139 AATAGGGCAAAGGAAAGATATCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAG
384 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAAAGAGGAG
* *
3165204 AACGCACTTATAATGCCTAATCT
449 AATGCACTTATAGTGCCTAAT-T
* *
3165227 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTGTCATTTGAGGTA-AGAACTTAGACTT
1 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACA-AACTTAGACTT
* * * * * *
3165291 TACAAAAATTGGTAGGTAGAAAGCCTTTCTTGTGGAACCAAATCATCAATATCGCATATCCTCAA
65 TACAAAAATTGGT-GGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGCGTATCCT-AA
* * * * *
3165356 -GAGAAGACTATGTTTATGGTGCCTAATCCCGAAAA-AATGGGGACTGGTTTAAGTAATCACGTT
128 TGAGAAGACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGACTAGTATGAGTATTCATGTT
* ** * * *
3165419 TCTAGTATATAAGAGACCAA-TGTTGATTCTATCAAAGATGGTGGAAAGAAAAGCTTTTCTTGCG
193 TGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
* * *
3165483 ACACCAAAGCATCAATGTCATGTATCTTGATAAAGGGAATGTGTTTT-GCGTTTCCAATTCTGAA
257 ACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAG-GTTCCCAATTCTGAA
* *
3165547 AATGGCATAGACTGTTATGAGAATTGATGCTTGTCTTACTTAAAGGAT-AAACTATGATTTTCAG
321 AAT-GCATAGACTGTT-TGAGAATCGATGCTTGTCTTA-TTAAAGGATGAACCT-TGATTTT-AG
* * *
3165611 GAAAATAGGGCAACGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCACTTATATTAATA-A
381 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAA-AGA
** * *** *
3165675 AAAAAATGTGTTTATAGTGCCTAATGA
445 GGAGAATGCACTTATAGTGCCTAAT-T
* * * *
3165702 CAAAATGAATGACGATCATTACTAGAA-CCAATATTTGTCTCATTTGAGGCGCAAACTTAAACTT
1 CAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGCACAAACTTAGACTT
* * *
3165766 TATAAAAATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCGTGTATCCTAAT
65 TACAAAAATTGGT-GGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGCGTATCCTAAT
** * **
3165831 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAGTGGGGACTAGTATGAGTATTTGTGTTT
129 GAGAAGACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGACTAGTATGAGTATTCATGTTT
*
3165896 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GAAAGGAAAAGCTTTTCTTGAGA
194 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-GAAAAGCTTTTCTTGCGA
* * *
3165960 CACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
258 CACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAGGTTCCCAATTCTGAAAA
* * * *
3166025 T--ATTGCAGAGTGTTTCGAAAATCGATGCTTGTCTTATTTAAGGGATGAACCTTCATTTTAAGG
323 TGCA-T--AGACTGTTT-GAGAATCGATGCTTGTCTTA-TTAAAGGATGAACCTTGATTTT-AGG
* * * *
3166088 GAAATAGGGCAAAGAAAAGATTTACGTGCAAAAGAAAATCAACAATATCACTTATCTTAAGGAGG
382 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAAAGAGG
* **
3166153 AGAATGTGAC-TGCAGTGCCTAATT
447 AGAATG-CACTTATAGTGCCTAATT
* * * * *
3166177 ACAAAATGAACGAAGATAATAACTACAATCCATTTTTGTC-CTATTTGAGGCACAAACTTA-AGC
1 -CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC-ATTTGAGGCACAAACTTAGA-C
* * ** * * *
3166240 TTTAGAAAAATTGGTGGGAAAATG-CTCTTCACGCGAAACC-AAG-ATAACAATGTCACGTGTCC
63 TTTACAAAAATTGGTGGGAAAAAGCCT-TTCTTGCGAAACCAAAGCAT--CAATATCGCGTATCC
* * ** * * *
3166302 TAAAGAGAAGACTATGTTTATAGTGCCTAATCTTGAAAAGAAAGGGGATTAGTATGACTATTCAT
125 TAATGAGAAGACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGACTAGTATGAGTATTCAT
*
3166367 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTG
190 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG
* * * * *
3166432 CAACACCAAAGCATTAATGCCATGCATCCTAAT-GAGGAGAATGTGTTT
255 CGACACCAAAGCATCAATGTCATGTATCCTAATAAAGG-GAATGTGTTT
3166480 ATACTACCTA
Statistics
Matches: 1057, Mismatches: 159, Indels: 74
0.82 0.12 0.06
Matches are distributed among these distances:
473 14 0.01
474 173 0.16
475 546 0.52
476 316 0.30
477 8 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (470 bp):
CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTT
ACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGCGTATCCTAATGA
GAAGACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGACTAGTATGAGTATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
CAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAGGTTCCCAATTCTGAAAATGC
ATAGACTGTTTGAGAATCGATGCTTGTCTTATTAAAGGATGAACCTTGATTTTAGGAAAATAGGG
CAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCTTAAAGAGGAGAATGCAC
TTATAGTGCCTAATT
Found at i:3166649 original size:950 final size:949
Alignment explanation
Indices: 3164785--3166533 Score: 2170
Period size: 950 Copynumber: 1.8 Consensus size: 949
3164775 AGAATCCTTG
*
3164785 TTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCA
1 TTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCA
*
3164850 AAACCAAAGCACCGATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTAGAAA
66 AAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTAGAAA
* *
3164915 AGAATGGGGATTAGTATGAGTACTAATGTTTATTTTATTTAAAAGACAAACTTTGATTCTATCAA
131 AGAATGGGGACTAGTATGAGTACTAATGTTTATCTTATTTAAAAGACAAACTTTGATTCTATCAA
** *
3164980 AAATGGTGGTGAGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG
196 AAATGGTGAAGAGAAAAGCTTTGCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG
* * * * *
3165045 GAATGTGTTTTAGATTCCCAATCTTGAAAATAATGGAGTCTGTTTTGAGAATCAATGCTTGTCTT
261 GAATGTGTTTTAGATTCCCAATCCTGAAAATAATGCAGACTGTTTCGAAAATCAATGCTTGTCTT
** * * * *
3165110 ATTTAAGGTCTGAACCTTGATTTTAGGAAAATAGGGCAAAGGAAAGATATCCTTGCAAAAGAAAA
326 ATTTAAGGGATGAACCTTCATTTTAGGAAAATAGGGCAAAGAAAAGATATACGTGCAAAAGAAAA
* * * *
3165175 TCATCAATATCATTTATCCTAAAGAGGAGAACGCACTTATAATGCCTAATCTCAAAATGAATGAA
391 TCAACAATATCACTTATCCTAAAGAGGAGAACGCACTTACAATGCCTAATCTCAAAATGAACGAA
* * * *
3165240 GATCATTACTAGAATCCATGTTTGTGTCATTTGAGGTAAGAACTTAGACTTTACAAAAATTGGTA
456 GATAATAACTACAATCCATGTTTGTGTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTA
* ** * * * * *
3165305 GGTAGAAAGCCTTTCTTGTGGAACCAAATCATCAATATCGCATATCCTCAAGAGAAGACTATGTT
521 GGGAGAAAGCCTTTCACGCGAAACCAAATCAACAATATCACATATCCTAAAGAGAAGACTATGTT
* * * * *
3165370 TATGGTGCCTAATCCCGAAAAAATGGGGACTGGTTTAAGTAATCACGTTTCTAGTATATAAGAGA
586 TATAGTGCCTAATCCCGAAAAAAAGGGGACTAGTATAACTAATCACGTTTCTAGTATATAAGAGA
* * * *
3165435 CCAATGTTGATTCTATCAAAGATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
651 CAAATGTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
* * * * * * ** * ***
3165500 TCATGTATCTTGATAAAGGGAATGTGTTTTGCGTTTCCAATTCTGAAAATGGCATAGACTGTTAT
716 CCATGCATCCTAATAAAGGGAATGTGTTTTACG-TACCAATTCAAAAAATGGAATAGACTAACAT
** * * * *
3165565 GAGAATTGATGCTTGTCTTACTTAAAGGATAAACTATGATTTTCAGGAAAATAGGGCAACGAAAA
780 GAGAATCCATGCTTGGCTTACTTAAAGGACAAACTATGAATTTCACGAAAATAGGGCAACGAAAA
* * ** *
3165630 GATTTCCATGCAAAAGAAAATCACCAATATCACTTATATTAATAAAAAAAATGTGTTTATAGTGC
845 GATTTCCATGCAAAACAAAAGCACCAATATCACTTATATTAATAAAAAAAATACGTTTATACTGC
3165695 CTAATGACAAAATGAATGACGATCATTACTAGAACCAATA
910 CTAATGACAAAATGAATGACGATCATTACTAGAACCAATA
* *
3165735 TTTGTCTCATTTGAGGCGCAAACTTAAACTTTATAAAAATTGGTCGGG-AAAAAGCCTTTCTTGC
1 TTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTCTTGC
* * *
3165799 GAAACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-A
65 AAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTAGA
* * ** * *
3165863 AAAGAGTGGGGACTAGTATGAGTATTTGTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
129 AAAGAATGGGGACTAGTATGAGTACTAATGTTTATCTTATTTAAAAGACAAACTTTGATTCTATC
* *
3165928 AAAAATGGTGAA-AGGAAAAGCTTTTCTTGAGACACCAAAGCTTCAATGTCATGTATCCTAATGA
194 AAAAATGGTGAAGA-GAAAAGCTTTGCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * *
3165992 AGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATATTGCAGAGTGTTTCGAAAATCGATGCTTGT
258 AAGGAATGTGTTTTAGATTCCCAATCCTGAAAATAATGCAGACTGTTTCGAAAATCAATGCTTGT
* *
3166057 CTTATTTAAGGGATGAACCTTCATTTTAAGGGAAATAGGGCAAAGAAAAGATTTACGTGCAAAAG
323 CTTATTTAAGGGATGAACCTTCATTTT-AGGAAAATAGGGCAAAGAAAAGATATACGTGCAAAAG
* * * * * *
3166122 AAAATCAACAATATCACTTATCTTAAGGAGGAGAATGTGAC-TGCAGTGCCTAAT-TACAAAATG
387 AAAATCAACAATATCACTTATCCTAAAGAGGAGAACG-CACTTACAATGCCTAATCT-CAAAATG
*
3166185 AACGAAGATAATAACTACAATCCAT-TTT-TGTCCTATTTGAGGCACA-AACTTA-AGCTTTAGA
450 AACGAAGATAATAACTACAATCCATGTTTGTGT-C-ATTTGAGGCA-AGAACTTAGA-CTTTACA
* * *
3166246 AAAATTGGT-GGGA-AAATG-CTCTTCACGCGAAACCAAGAT-AACAATGTCACGTGTCCTAAAG
511 AAAATTGGTAGGGAGAAA-GCCT-TTCACGCGAAACCAA-ATCAACAATATCACATATCCTAAAG
** * * * * *
3166307 AGAAGACTATGTTTATAGTGCCTAATCTTGAAAAGAAAGGGGATTAGTATGACTATTCATGTTTG
573 AGAAGACTATGTTTATAGTGCCTAATCCCGAAAA-AAAGGGGACTAGTATAACTAATCACGTTTC
** *
3166372 TCTTATTTAAGAGACAAACT-TTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAC
637 TAGTATATAAGAGACAAA-TGTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAC
* *
3166436 ACCAAAGCATTAATGCCATGCATCCTAAT-GAGGAGAATGTGTTTATAC-TACCTAA-TCAAAAA
701 ACCAAAGCATCAATGCCATGCATCCTAATAAAGG-GAATGTGTTT-TACGTACC-AATTCAAAAA
*
3166498 AT-GAATGAAGA-TCAACACT-AGAATCCATGTTTGGCT
763 ATGGAAT--AGACT-AACA-TGAGAATCCATGCTTGGCT
3166534 CCTTTAAGGC
Statistics
Matches: 676, Mismatches: 101, Indels: 43
0.82 0.12 0.05
Matches are distributed among these distances:
949 12 0.02
950 388 0.57
951 269 0.40
952 7 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (949 bp):
TTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCA
AAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTAGAAA
AGAATGGGGACTAGTATGAGTACTAATGTTTATCTTATTTAAAAGACAAACTTTGATTCTATCAA
AAATGGTGAAGAGAAAAGCTTTGCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG
GAATGTGTTTTAGATTCCCAATCCTGAAAATAATGCAGACTGTTTCGAAAATCAATGCTTGTCTT
ATTTAAGGGATGAACCTTCATTTTAGGAAAATAGGGCAAAGAAAAGATATACGTGCAAAAGAAAA
TCAACAATATCACTTATCCTAAAGAGGAGAACGCACTTACAATGCCTAATCTCAAAATGAACGAA
GATAATAACTACAATCCATGTTTGTGTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTA
GGGAGAAAGCCTTTCACGCGAAACCAAATCAACAATATCACATATCCTAAAGAGAAGACTATGTT
TATAGTGCCTAATCCCGAAAAAAAGGGGACTAGTATAACTAATCACGTTTCTAGTATATAAGAGA
CAAATGTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
CCATGCATCCTAATAAAGGGAATGTGTTTTACGTACCAATTCAAAAAATGGAATAGACTAACATG
AGAATCCATGCTTGGCTTACTTAAAGGACAAACTATGAATTTCACGAAAATAGGGCAACGAAAAG
ATTTCCATGCAAAACAAAAGCACCAATATCACTTATATTAATAAAAAAAATACGTTTATACTGCC
TAATGACAAAATGAATGACGATCATTACTAGAACCAATA
Found at i:3167073 original size:792 final size:791
Alignment explanation
Indices: 3165679--3167270 Score: 1944
Period size: 792 Copynumber: 2.0 Consensus size: 791
3165669 TAATAAAAAA
* * * * * ** *
3165679 AATGTGTTTATAGTGCCTAATGACAAAATGAATGACGATCATTACTAGAACCAATATTTGTCTCA
1 AATGTGTTTATACTACCTAATCAAAAAATGAATGAAGATCAACACTAGAACCAATATTTGGCTCA
* * *
3165744 TTTGAGGCGCAAACTTAAACTTTATAAAAATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAG
66 TTTAAGGCACAAACTTAAACTTTACAAAAATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAG
* * **
3165809 CATCAATGTCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAGTGGGG
131 CATCAATATCGTGTATCCTAATGAGAAGACTACGTTTATACTGCCTAATCCTAAAAAGAGTGGGG
* * ** *
3165874 ACTAGTATGAGTATTTGTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGA
196 ACTAATATAAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGA
* * *
3165939 AAGGAAAAGCTTTTCTTGAGACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTT
261 AAGGAAAAGCTTTTCTTGAGACACCAAAACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTT
* * * *
3166004 TTAGGTTCCCAATCCTGAAAATATTGCAGAGTGTTTCGAAAATCGATGCTTGTCTTATTTAAGGG
326 TTAGGTTCCCAATCCTGAAAAGAATGCAGAGTGTTACAAAAATCGATGCTTGTCTTATTTAAGGG
* * *
3166069 ATGAACCTTCATTTTAAGGGAAATAGGGCAAAGAAAAGATTTACGTGCAAAAGAAAATCAACAAT
391 ATGAACCTTCATTTTAAGGAAAATACGGCAAAGAAAAGATTTACATGCAAAAGAAAATCAACAAT
* * *
3166134 ATCACTTATCTTAAGGAGGAGAATGTGACTGCAGTGCCTAATTACAAAATGAACGAAGATAATAA
456 ATCACTTATCCTAAGGAGGAGAATGTGACTACAGTGCCTAATTACAAAATGAAAGAAGATAATAA
* * ** **
3166199 CTACAATCCATTTTTGTCCTATTTGAGGCACAAACTTAAGCTTTAGAAAAATTGGTGGGAAAATG
521 CTACAATCCATGTTTGTCCTATTTGAGGCACAAACTTAAGCTTTACAAAAATTGAAGGGAAAAAA
* * * *
3166264 CTCTTCACGCGAAACC-AAG-ATAACAATGTCACGTGTCCTAAAGAGAAGACTATGTTTATAGTG
586 CTCTTCACGCAAAACCAAAGCAT--CAATATCACGTATCCTAAAGAGAACACTATGTTTATAGTG
* *
3166327 CCTAATCTTGAAAAGAA-AGGGGATTAGTATGACTATTCATGTTTGTCTTAT-TTAAGAGACAAA
649 CCTAATCTTGAAAAGAATA-GGGATTAGTATGACTATTCATGATTGCCTTATCTT-AGAGACAAA
* * *
3166390 CTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGCCAT
712 CATTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-ACACCAAAGCATCAATGCCAT
*
3166455 GCATCCTAATG-AGGAG
776 ACATCCTAATGAAGG-G
*
3166471 AATGTGTTTATACTACCTAATCAAAAAATGAATGAAGATCAACACTAGAATCC-ATGTTTGGCTC
1 AATGTGTTTATACTACCTAATCAAAAAATGAATGAAGATCAACACTAGAA-CCAATATTTGGCTC
* * ***
3166535 CTTTAAGGCACGAACTTAGAA-TTTACGTTAATTGGT-GGGACAAAAGCCTTTCTTGC-AGAACC
65 ATTTAAGGCACAAACTTA-AACTTTACAAAAATTGGTCGGGA-AAAAGCCTTTCTTGCGA-AACC
* * * * * *
3166597 AAAGCATCAGTATTGTGTATTCTTATGCGAAGACTACGTTTATACTGCCTAATCCTGAAAAGAAG
127 AAAGCATCAATATCGTGTATCCTAATGAGAAGACTACGTTTATACTGCCTAATCCTAAAAAG-AG
* *
3166662 -GGGGA-TCAATATAAGTATTAATGTTTGTTTTATTTAAGAGACAAACTTTTATTCTATCAAAAA
191 TGGGGACT-AATATAAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * *
3166725 TAGT-AGAGAGAAAA-CTTTTTCTTGTGACACGAAAACATCAATGTTAAGTATCCTAATGAAGGG
255 TAGTGAAAG-GAAAAGC-TTTTCTTGAGACACCAAAACATCAATGTCAAGTATCCTAATGAAGGG
* * *
3166788 AATGTGTTTTAGGTTCCCAATCCTTAAAAGAATGTAGATTGTTACAAAAATCGATGCTTGTCTTA
318 AATGTGTTTTAGGTTCCCAATCCTGAAAAGAATGCAGAGTGTTACAAAAATCGATGCTTGTCTTA
* * * * ***
3166853 TTTATGGGATGAACTTTGATTTT-AGGAAAATACGGCAAAGAAAAGATTTCCATGTGGAAGAAAA
383 TTTAAGGGATGAACCTTCATTTTAAGGAAAATACGGCAAAGAAAAGATTTACATGCAAAAGAAAA
** * * * *
3166917 TCATTAATATCATTTATCCTAATGAGGATAATGT-ACTTATAGTGCCTAATCT-CAAAATGAAAG
448 TCAACAATATCACTTATCCTAAGGAGGAGAATGTGAC-TACAGTGCCTAAT-TACAAAATGAAAG
* * * * *
3166980 AAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTT-AGACTTTACAAAAATTG
511 AAGATAATAACTACAATCCATGTTTGTCCTATTTGAGGCACAAACTTAAG-CTTTACAAAAATTG
* ** ** *
3167044 CAAGGTAAAAAACAT-TAT-TTGCAAAACCAAAGCATCAATATCTTGTATCCTAATGAGAACACT
575 -AAGGGAAAAAAC-TCT-TCACGCAAAACCAAAGCATCAATATCACGTATCCTAAAGAGAACACT
* *
3167107 ATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGATTGCCTTATCT
637 ATGTTTATAGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTCATGATTGCCTTATCT
* * * *
3167172 TAGAGGCACACATTGATTCTATCAAAAACGGTGGAAAGAGAAGCTTTTCTTGCACACCAAAGCAT
702 TAGAGACAAACATTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCAT
* * *
3167237 CAATGTCTTATATCCTAATGAAGGG
767 CAATGCCATACATCCTAATGAAGGG
3167262 AATGTGTTT
1 AATGTGTTT
3167271 TTGGTTCCCA
Statistics
Matches: 678, Mismatches: 103, Indels: 39
0.83 0.13 0.05
Matches are distributed among these distances:
790 4 0.01
791 184 0.27
792 474 0.70
793 14 0.02
794 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (791 bp):
AATGTGTTTATACTACCTAATCAAAAAATGAATGAAGATCAACACTAGAACCAATATTTGGCTCA
TTTAAGGCACAAACTTAAACTTTACAAAAATTGGTCGGGAAAAAGCCTTTCTTGCGAAACCAAAG
CATCAATATCGTGTATCCTAATGAGAAGACTACGTTTATACTGCCTAATCCTAAAAAGAGTGGGG
ACTAATATAAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGA
AAGGAAAAGCTTTTCTTGAGACACCAAAACATCAATGTCAAGTATCCTAATGAAGGGAATGTGTT
TTAGGTTCCCAATCCTGAAAAGAATGCAGAGTGTTACAAAAATCGATGCTTGTCTTATTTAAGGG
ATGAACCTTCATTTTAAGGAAAATACGGCAAAGAAAAGATTTACATGCAAAAGAAAATCAACAAT
ATCACTTATCCTAAGGAGGAGAATGTGACTACAGTGCCTAATTACAAAATGAAAGAAGATAATAA
CTACAATCCATGTTTGTCCTATTTGAGGCACAAACTTAAGCTTTACAAAAATTGAAGGGAAAAAA
CTCTTCACGCAAAACCAAAGCATCAATATCACGTATCCTAAAGAGAACACTATGTTTATAGTGCC
TAATCTTGAAAAGAATAGGGATTAGTATGACTATTCATGATTGCCTTATCTTAGAGACAAACATT
GATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCATCAATGCCATACATC
CTAATGAAGGG
Found at i:3167357 original size:475 final size:474
Alignment explanation
Indices: 3166457--3172484 Score: 6376
Period size: 475 Copynumber: 12.7 Consensus size: 474
3166447 AATGCCATGC
* * ** **
3166457 ATCCTAATGAGGAGAATGTGTTTATACTACCTAATCAAAAAATGAATGAAGATCAACACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAAT
* * * * ***
3166522 CCATGTTTGGCTCCTTTAAGGCACGAACTTAGAATTTACGTTAATTGGTGGGACAAAAGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTC
* * * * * * * **
3166587 TTGCAGAACCAAAGCATCAGTATTGTGTATTCTTATGCGAAGACTACGTTTATACTGCCTAATCC
130 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * * *
3166652 TGAAAAGAAGGGGGATCAATATAAGTATTAATGTTTGTTTTATTTAAGAGACAAACTTTTATTCT
195 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * * * *
3166717 ATCAAAAATAGTAGAGAGAAAA-CTTTTTCTTGTGACACGAAAACATCAATGTTAAGTATCCTAA
260 ATCAAAAATGGTGGAAAGAAAAGC-TTTTCTTG-CACACCAAAGCATCAATGTCATGTATCCTAA
* * * *
3166781 TGAAGGGAATGTGTTTTAGGTTCCCAATCCTT-AAAAGAATGTAGATTG-TTACAAAAATCGATG
323 TGAAGGGAATGTGTTTTTGGTTCCCAAT-CTTGAAAAGAATGGAGACTGTTTACAAGAATCGATG
* * * *
3166844 CTTGTCTTATTTATGGGATGAACTTTGATTTT-AGGAAAATACGGCAAAGAAAAGATTTCCATGT
387 CTTGTCTTATTTAAGGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
** * *
3166908 GGAAGAAAATCATTAATATCATTT
451 AAAAGAAAATCATCAATATCACTT
* ** *
3166932 ATCCTAATGAGGATAATGTACTTATAGTGCCTAATCTCAAAATGAAAGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAAT
* ** * * *
3166997 CCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGCAAGGTAAAAAACATTAT
66 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGGAAAAAGCCTT-T
* *
3167062 -TTGCAAAACCAAAGCATCAATATCTTGTATCCTAATGAGAACACTATGTTTATGGTGCCTAATC
129 CTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * * *
3167126 TTGAAAAGAATAGGGATTAGTATGAGTATTCATGATTGCCTTATCTT-AGAGGCACACATTGATT
194 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT-TTAAGAGACAAACTTTGATT
* * * *
3167190 CTATCAAAAACGGTGGAAAGAGAAGCTTTTCTTGCACACCAAAGCATCAATGTCTTATATCCTAA
258 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCATCAATGTCATGTATCCTAA
* * * *
3167255 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACT-TCTATAACAATCGATGC
323 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTACAAGAATCGATGC
* * * * **
3167319 TTGTCTTATTCAAAGGGCAAACTTTGATCTTAAGGAAAATCGGGCAAAGAAAAGATTTTAATGCA
388 TTGTCTTATT-TAAGGGTAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* *
3167384 AAAGAAAATCATCAACATCATTT
452 AAAGAAAATCATCAATATCACTT
* * * ** * *
3167407 ACCCTAAAGAGGGGAATGTGTTTATAGTGTCC-AATAACAAAATGAAAGAAGCTCATTACTAGAA
1 ATCCTAATGAGGAGAATGTGTTTATAGTG-CCTAATCTCAAAATGAATGAAGATCATTACTAGAA
* * * * *
3167471 TCCACGTTTGTCACATTTGAGGCACGAACTTA-ACCTTAC-AAAAGTGGTGGAAAAAATGCCTTT
65 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTT
* * * *
3167534 CTTGCAAAATCAAAGC-TCCAATATCGTGAATCCAAATGAGAAGACTATTTTTATGGTGCCTAAT
129 CTTGCAAAACCAAAGCAT-CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * *
3167598 CCTGAAAAGAATGGGGAATAGTATAAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATT
193 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
*
3167663 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTA
258 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CACACCAAAGCATCAATGTCATGTATCCTA
* * * * ** *
3167728 ATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATATTACAGAGTGTTT-CGAA-AATCGAT
322 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTAC-AAGAATCGAT
* * * * *
3167791 GCTTGTCTTATTTAAGGGATGAACCTTCATTTTAAGGGAAATAGGGCAAAGAAAAGATTTACATG
386 GCTTGTCTTATTTAAGGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
*
3167856 CAAAAGAAAATCAACAATATCACTT
450 CAAAAGAAAATCATCAATATCACTT
* * ** ** * * * *
3167881 ATCTTAAGGAGGAGAATGTGACTGCAGTGCCTAAT-TACAAAATGAACGAAGATAATAACTACAA
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCT-CAAAATGAATGAAGATCATTACTAGAA
* * * * *
3167945 TCCATTTTTGTC-CTATTTGAGGCACAAACTTAAACTTTAGAAAAATTGGTGGGAAAATG-CTCT
65 TCCATGTTTGTCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCT-T
** * * ** * * *
3168008 TCACGCGAAACC-AAG-ATAACAATGTCACGTGTCCTAAAGAGAAGACTATGTTTATAGTGCCTA
128 TCTTGCAAAACCAAAGCAT--CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
3168071 ATCTTGAAAAGAAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
191 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
3168136 TTCTATAAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGCCATGCATC
256 TTCTAT-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-ACACCAAAGCATCAATGTCATGTATC
* * * *
3168201 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCGTGAAAAAGAATGGAGATTG-TTGCAAGAATT
319 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG-AAAAGAATGGAGACTGTTTACAAGAATC
* * *
3168265 GGTGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAAGAAAAATAGGGCAAA-AAAAGATTTCC
383 GATGCTTGTCTTATTT-AAGGGTAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
*
3168329 ATGCAAAAGACAATCATCAATATCACTT
447 ATGCAAAAGAAAATCATCAATATCACTT
* * * * *
3168357 ATCCTAAAGAGGAGAACGTGCTTATAATGCCTAATCTCAAAATGGATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAAT
* * * * * * *
3168422 CCATGTTTGTGTCATTCGTGGTAAGAACTTAGACTTTACAAAAATTGGTAGGCAGAAAGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTTC
* ** * * ** *
3168487 TTACGGAACCAAATCATGAATATCGCATATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCC
130 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * * ** * *
3168552 CGAAAA-AATGGGGACTAGTTTAAGTAATCATGTTTCTAGTATATAAGAGACAAATTTTGATTCT
195 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
3168616 ATAAAAAATGGTGGAAAGAAAAGCTTTTCTT-CTGACACCAAAGCATCAATGTCATGTATCCTGA
260 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC--ACACCAAAGCATCAATGTCATGTATCCTAA
* * * * *
3168680 TAAAGGAAATGTG-TTTTGCGTTTCCAAT-TCTGAAAATGGCAT--AGACTG-TTACGAGAATCG
323 TGAAGGGAATGTGTTTTTG-GTTCCCAATCT-TGAAAA--GAATGGAGACTGTTTACAAGAATCG
* * * *
3168740 ATGCTTGTCTTATTTAAAGGATAAACTATGATTTTCAGGAAAATAGGGCAACGAAAAGATTTCCA
384 ATGCTTGTCTTATTT-AAGGGTAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
*
3168805 TGCAAAAGAAAATCACCAATATCACTT
448 TGCAAAAGAAAATCATCAATATCACTT
* * * **
3168832 ATCCTAATGA-AAAACATGTGTTTATAGTGCCTAATCACAAAATGAATGGCGATCATTACTAGAA
1 ATCCTAATGAGGAGA-ATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAA
* * * ** * * *
3168896 TCAATATTTGTCTCTTTTGAGGTGCAAACTTAAACTTTATAAAAATTGGTCGGGAAAAAGCCTTT
65 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCCTTT
* *
3168961 CTTGCAGAACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
129 CTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * *
3169026 CTAAAAAGAATGGGGACTAGTATGAGTATT--TG--TGTCTTATTTAAGAGACAAACTTTAATTC
194 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * *
3169087 TATCAAAAATGGT-GAAAGGAAAAGCTTTCCCTGAGACACCAAA--ATCAATGTCATGTATCCTA
259 TATCAAAAATGGTGGAAA-GAAAAGCTTTTCTTG-CACACCAAAGCATCAATGTCATGTATCCTA
** * *
3169149 AAAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG-TTACGAGAATTGATG
322 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTACAAGAATCGATG
* * * * *
3169213 CTTGTCTT-TTTAAGGGCTGAACTTTTATTTTAAGGAAATTAAGGCAAAGTAAAGATTTCCATGC
387 CTTGTCTTATTTAAGGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
*
3169277 AAAAGAAAATCATCAATATCATTT
451 AAAAGAAAATCATCAATATCACTT
* * ** *
3169301 ATCCTAACGAGGAGAATGTGTTTATACTGCCTAATCAAAAAATGAATGAAGATCAATACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAAT
* * * * * ***
3169366 CCATGTTTGGCTCCTTTAAGGCACGAACGTAGAATTTACGTTAATTGGTGGGACAAAAGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTC
* * * * * * * * **
3169431 TTGGAGAACCAAAGCATCAATATTGTGTATTCTTATGCGAAGACTACGTCTATACTGCCTAATCC
130 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * *
3169496 TGAAAAGAAGGGGGATCAGTATAAGTATTAATGTTTGTTTTATTTAAGAGACAAACTTTTATTCT
195 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * * *
3169561 ATCAAAAATAGTAGAGAGAAAA-CTTTTTCTTGTGACACGAAAACATCAATGTCAAGTATCCTAA
260 ATCAAAAATGGTGGAAAGAAAAGC-TTTTCTTG-CACACCAAAGCATCAATGTCATGTATCCTAA
* * * *
3169625 TGAAGGGAATGTGTTTTAGGTTCCCAATCTTTAAAAGAATGGAGATTG-TTACAAAAATCGATGC
323 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTACAAGAATCGATGC
* * **
3169689 TTGTCTTATTTATGGGATAAACTTTGATTTT-AGGAAAATACGGCAAAGAAAAGATTTCCATGTG
388 TTGTCTTATTTAAGGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * *
3169753 GAAGAAAATCATTAATATCATTT
452 AAAGAAAATCATCAATATCACTT
* * ** *
3169776 ATCCTAATGAGGATAACGTACTTATAGTGCCTAATCTCAAAATGAAAGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAAT
* *
3169841 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGGGTAAAAAACCTTAT
66 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTT-T
* *
3169906 -TTGCAAAACCAAAGCATCAATATCTTGTATCCTAATGAGAACACTATGTTTATGGTGCCTAATC
129 CTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * * * * * *
3169970 TTTAAAAGAATAGGGATTAGTATGAGTATTAATGATTGCCTTATTTTAGAGGCACACATTGATTC
194 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
3170035 TATCAAAAACGGTGGAAAGAGAACCTTTTATTGCACACCAAAGCATCAATGTCTTGTATCCTAAT
259 TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCATCAATGTCATGTATCCTAAT
* * *
3170100 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACT-TTTATAACAATCGATGCT
324 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTACAAGAATCGATGCT
* * * * *
3170164 TGTCTTATTCAAAGGGCAAACTTTGATCTTAAGGAAAATTA-GGCAAATAAAAGATTTTCATGCA
389 TGTCTTATT-TAAGGGTAAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCA
* *
3170228 AAAGAAAATCATCAACATCATTT
452 AAAGAAAATCATCAATATCACTT
* * * ** * *
3170251 A-CCTTAAAGAGGGGAATGTGTTTATAGTGCCCAATAACAAAATGAAAGAAGCTCATTACTAGAA
1 ATCC-TAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAA
* * * *
3170315 TCCACGTTTGTCACATTTGAGGCACGAACTTA-ACCTTAC-AAAAGTGGTGGGAAAAATGCCTTT
65 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTT
* * * * * * *
3170378 CTTGCAAAATCAATGC-TCCAATATCGTGAATCCAAATAAGAAGACTATTTTTATAGTGCCTAAT
129 CTTGCAAAACCAAAGCAT-CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * *
3170442 CCTGAAAAGAATGGGGAATAGTATGAGTATTTATATTTGTCTTATTTAGGAGACAAACTTTGACT
193 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
*
3170507 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTA
258 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CACACCAAAGCATCAATGTCATGTATCCTA
* * * * ** *
3170572 ATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATATTACAGAGTGTTT-CGAA-AATCGAT
322 ATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTAC-AAGAATCGAT
* * * * *
3170635 GCTTGTCTTATTTAAGGGATGAACCTTCATTTTAAGGGAAATAGGGCAAAGAAAAGATTTACATG
386 GCTTGTCTTATTTAAGGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
*
3170700 CAAAAGAAAATCAACAATATCACTT
450 CAAAAGAAAATCATCAATATCACTT
* * ** * * * * *
3170725 ATCTTAAGGAGGAGAATGTGACTGTAGTGCCTAAT-TACAAAATGAACGAAGATAATAACTACAA
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCT-CAAAATGAATGAAGATCATTACTAGAA
* * * * *
3170789 TCCATTTTTGTC-CTATTTGAGGCACAAACTTAAACTTTAGAAAAATTGGTGGGAAAATG-CTCT
65 TCCATGTTTGTCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCT-T
** * * * * *
3170852 TCACGCGAAACC-AAG-ATAACAATGTCACTG--TCCTAAAGAGAAGACTATGTTTATAGTGCCT
128 TCTTGCAAAACCAAAGCAT--CAATATC-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * *
3170913 AATCTTGAAAAGAAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
190 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
3170978 ATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGCCATGCATC
255 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-ACACCAAAGCATCAATGTCATGTATC
* * *
3171043 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATTTTGAAAAGAATGGAGATTG-TTACAAGAATTG
319 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTACAAGAATCG
* * *
3171107 GTGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGAAAAATAAGGCAAA-AACAAGATTTCC
384 ATGCTTGTCTTATTTAAGGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAA-AAGATTTCC
*
3171171 ATGCAAAAGAAAATCATCGATATCACTT
447 ATGCAAAAGAAAATCATCAATATCACTT
** * *
3171199 ATCCTAATGAAAAGAATGTGTTTATAGTGCCTAAT-TACCAAATGAATGAAGATAATTACTAGAA
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCT-CAAAATGAATGAAGATCATTACTAGAA
** * * *
3171263 TCCACCTTTGTCTCATTTGAGGCTCGAACTTAGACTTTACAAAATTTGGTGGGAAAAAACCTTTC
65 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTC
* * * ** *
3171328 TTGC-GAACCAAAGCATCAATGTCGTGTATACTAAAAAGAAAACTATGTTTATGGTGCCTAATCC
130 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
*
3171392 T-AAAAGGAATGGGGATTAGTATGAGTATTCATG--TGTCTT-TTATAAGAGAAAAACTTTGATT
195 TGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT-TAAGAGACAAACTTTGATT
* * * * * *
3171453 CTGTCAAAAAAAGGTGGAAA-AAAATGGTATTCTTACAACACCAAAGCTTCAATGTCATGTATCC
258 CTATC-AAAAATGGTGGAAAGAAAA-GCTTTTCTTGC-ACACCAAAGCATCAATGTCATGTATCC
* ** * * *** *
3171517 TAAAGAAGAAAATGTGTTTATGG-TCCCAAATCTTGAAAAGAATAGAGACTG-TTATGGGAATTG
320 TAATGAAGGGAATGTGTTTTTGGTTCCC-AATCTTGAAAAGAATGGAGACTGTTTACAAGAATCG
* * *
3171580 ATGCTTGT-TTTTTTAAGCGAG-AAACTTTGATTTTAAGGAAAATAAGGCAAAGTAAAGATTTCC
384 ATGCTTGTCTTATTTAAG-G-GTAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* *
3171643 ATGCAAAAGAAAATCATTAATATCAATT
447 ATGCAAAAGAAAATCATCAATATCACTT
** * * *
3171671 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGACTGAAGATCAATACGAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAAT
* ** ** * * * *
3171736 CCATGTTTGTCTCAATTGAGTAATAAAGC-TAAACTTTACAAAAATTGGAGGGAAAAAAACATTT
66 CCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTT
* *
3171800 CTTGCGAAACCAAAGCA-CGAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
129 CTTGCAAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
3171864 CCTGAAAAACAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTGTGAT
193 CCTG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
3171929 TCTATTAAAAATGGTGGAAATAAAAGCTTTTCTTGCGACACCAAAGCAT-AATTGTCTTGTAATC
257 TCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-ACACCAAAGCATCAA-TGTCATGT-ATC
* * * ** * * ** *
3171993 CTAATTAAGGAAATGTCTTTTAAGTTCCCAATCCTGAAAATAATGGAGACTG-TTATGAGAATCA
319 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTACAAGAATCG
* * ** ** * *
3172057 ACGCTTTTCTTATTTAAGGGATAAACAATGACGTTAAGAAAAATAGGGCAAA-AAAACATTTCCA
384 ATGCTTGTCTTATTTAAGGG-TAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* *
3172121 TGCAAAGGAAAATCAACAATATCACTT
448 TGCAAAAGAAAATCATCAATATCACTT
* ** * * *
3172148 ATCCTAATAAAAAGAATGTGTTTATAGCGCCTAAT-TACAAAATGAATGATGATCATTACTAAAA
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCT-CAAAATGAATGAAGATCATTACTAGAA
* *
3172212 TCCATTTTTGTC-CTATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGAGGAAAAAGCCTT
65 TCCATGTTTGTCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAAAAAGCCTT
* * * *
3172276 TCTTGCTAAACCAAAGCATCAATGTCATGTATCCTAATGAGAGGACTATGTTTATGGTGCCTAAT
128 TCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * ** * * * *
3172341 CTTAAAAAGAATGGCAATTAGTATGAGTATTCATGTTTATCTTTTTTAAGAGAAAAACATTGATT
193 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * * * **
3172406 TTATCAAAAACGATGGAAAGAAAAGCTTTCCTTACGACACCAAAGCGTTAATGTTTTGTATCCTA
258 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-ACACCAAAGCATCAATGTCATGTATCCTA
*
3172471 AAGAAGGGAATGTG
322 ATGAAGGGAATGTG
3172485 CTTCCAGATC
Statistics
Matches: 4633, Mismatches: 790, Indels: 260
0.82 0.14 0.05
Matches are distributed among these distances:
468 11 0.00
469 242 0.05
470 74 0.02
471 14 0.00
472 276 0.06
473 512 0.11
474 1232 0.27
475 1327 0.29
476 494 0.11
477 400 0.09
478 49 0.01
479 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (474 bp):
ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAAT
CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCT
TGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCATCAATGTCATGTATCCTAATGA
AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTACAAGAATCGATGCTTG
TCTTATTTAAGGGTAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
AAAATCATCAATATCACTT
Found at i:3172669 original size:159 final size:157
Alignment explanation
Indices: 3172267--3172672 Score: 401
Period size: 159 Copynumber: 2.5 Consensus size: 157
3172257 CTGGTGAGGA
* * * * *
3172267 AAAAGCCTTTCTTGCTAAACCAAAGCATCAATGTCATGTATCCTA-ATGAGAGGACTATGTTTAT
1 AAAAGCTTTTCTTGCTACACCAAAGCATCAATGTCATGTATCCTATA-AAG-GGAATGTGTTTAT
* * * * *
3172331 GGTGCCTAATCTTAAAAAGAATGGCAATTAGTATGAGTATTCATGTTTATCTTTTTTAAGAGAAA
64 GGT-CCCAATCTTGAAAAGAATGGCAATTAGTATGAGTATTAATGTTTAGCTTTTTTAAAAGAAA
*
3172396 AACATTGATTTTATCAAAAACGATGGAAAG
128 AACATTGATTATATCAAAAACGATGGAAAG
* * * * * ** * *
3172426 AAAAGCTTTCCTTACGACACCAAAGCGTTAATGTTTTGTATCCTAAAGAAGGGAATGTGCTTCCA
1 AAAAGCTTTTCTTGCTACACCAAAGCATCAATGTCATGTATCCTATA-AAGGGAATGTG-TT-TA
* * * * *
3172491 -GATCCCAGTCTCGACAAGAATAGG-GATTAGTATGAGTATTAATGTTT-GCTTTATTTAAAAGA
63 TGGTCCCAATCTTGAAAAGAAT-GGCAATTAGTATGAGTATTAATGTTTAGCTTT-TTTAAAAGA
* *
3172553 CAAAC-TTCGATTATATCAAAAAC-AGTGGAAAT
126 AAAACATT-GATTATATCAAAAACGA-TGGAAAG
* *
3172585 AAAAGCTTTTCTTGCTACACCAAAGAATCGATGTCATGTATCCTATTAAAGGGAATGTGTTTATG
1 AAAAGCTTTTCTTGCTACACCAAAGCATCAATGTCATGTATCCTA-TAAAGGGAATGTGTTTATG
3172650 GTCCCAAATCTTGAAAAGAATGG
65 GTCCC-AATCTTGAAAAGAATGG
3172673 ACACTGTTAT
Statistics
Matches: 195, Mismatches: 42, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
157 1 0.01
158 16 0.08
159 167 0.86
160 10 0.05
161 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
AAAAGCTTTTCTTGCTACACCAAAGCATCAATGTCATGTATCCTATAAAGGGAATGTGTTTATGG
TCCCAATCTTGAAAAGAATGGCAATTAGTATGAGTATTAATGTTTAGCTTTTTTAAAAGAAAAAC
ATTGATTATATCAAAAACGATGGAAAG
Found at i:3173123 original size:219 final size:219
Alignment explanation
Indices: 3172718--3173157 Score: 711
Period size: 219 Copynumber: 2.0 Consensus size: 219
3172708 AGATAAACTT
* * ** * **
3172718 TGATTTTAAGGAAAATAAGGCAAAGTAAAGATTTCCATGCAAAAGAAGATCATTAATATCAATTA
1 TGATGTTAAGAAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCAACAATATCAATTA
** *
3172783 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGATGATCATTACTAGAATC
66 TCCTAATGAAAAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGATAATCATTACTAGAATC
*
3172848 CATTTTTGTCCCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGAGGAAAAAGCCTTTCT
131 CATTTTTGTCCCATTTGAGGCACAAACTTAGACTTTACAAAAACTGGTGAGGAAAAAGCCTTTCT
3172913 TGCGAAACCAAAGCATCAATGTCA
196 TGCGAAACCAAAGCATCAATGTCA
* * *
3172937 TGATGTTAAGAAAAATAGGGCAAAAAAAAGATTTCCATGCAAAGGAAAATCAACAATATCACTTA
1 TGATGTTAAGAAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCAACAATATCAATTA
3173002 TCCTAATGAAAAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGATAATCATTACTAGAATC
66 TCCTAATGAAAAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGATAATCATTACTAGAATC
*
3173067 CATTTTTGTCCCATTTGAGGTACAAACTTAGGA-TTTACAAAAACTGGTGAGGAAAAAGCCTTTC
131 CATTTTTGTCCCATTTGAGGCACAAACTTA-GACTTTACAAAAACTGGTGAGGAAAAAGCCTTTC
**
3173131 TTGTTAAACCAAAGCATCAATGTCA
195 TTGCGAAACCAAAGCATCAATGTCA
3173156 TG
1 TG
3173158 TATCCTAATG
Statistics
Matches: 203, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
219 201 0.99
220 2 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (219 bp):
TGATGTTAAGAAAAATAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCAACAATATCAATTA
TCCTAATGAAAAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGATAATCATTACTAGAATC
CATTTTTGTCCCATTTGAGGCACAAACTTAGACTTTACAAAAACTGGTGAGGAAAAAGCCTTTCT
TGCGAAACCAAAGCATCAATGTCA
Found at i:3173515 original size:159 final size:158
Alignment explanation
Indices: 3173120--3174633 Score: 705
Period size: 159 Copynumber: 9.6 Consensus size: 158
3173110 CTGGTGAGGA
* ** * * * * *
3173120 AAAAGCCTTTCTTGTTAAACCAAAGCATCAATGTCATGTATCCTAAT-GAGACGACTATGTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATTAAAG-GGAATGTGTTTAT
* * * * * *
3173184 GGTGCCTAATCTTAAAAAGAATGGCAATTAGTATGAGTATTTATGTTTATCTTT-TTTAAGACAA
65 GGTGCCTAATCTTGAAAAGAATGG-GATTAGTATGAGTATTCATGTTT-GCTTTATTTAAGAGAC
*
3173248 AAACTTTGATTCTATCAAAAACGGTGGAAAG
128 AAACTTTGATTTTATCAAAAACGGTGGAAAG
* * * * ** *
3173279 AAAAGCTTTTCTTACGACACCAAAGCTTTAATGTTTTGTATCCTA-AAGAAGGGAATGTGTTT-T
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATTA-AAGGGAATGTGTTTAT
* * * *
3173342 CGGAT-CTTAGTCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGCTTTATTTAAAAGA
65 -GG-TGCCTAATCTTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGCTTTATTTAAGAGA
*
3173406 CAAACTTTGATTTTATCAAAAACGGTGGAAAT
127 CAAACTTTGATTTTATCAAAAACGGTGGAAAG
* * *
3173438 AAAAGCTTTTCTTGCTACACCAAAGAATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTATG
* * * * * * * * *
3173503 GTCCCAAATCTTGAAAAGAATGGAGACT-GTTATGGGAATTGATGCTTG-TTTTTTTAAGAGATA
66 GTGCCTAATCTTGAAAAGAATGG-GATTAG-TATGAGTATTCATGTTTGCTTTATTTAAGAGACA
** * *
3173566 AACTTTGATTTTAAGGAAAATA-AG-GCAAAG
129 AACTTTGATTTT-ATCAAAA-ACGGTGGAAAG
* * * * * * ** * * * * *
3173596 TAACGATTTCCATGCAAAAGAAAATCATTAATATCAAT-TATCCTAAT-GAGGAGAATGTGTTTA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTC-ATGTATCCTATTAAAGG-GAATGTGTTTA
* * * * * * * * * * * *
3173659 TAGTGCCTAATC--AAAATATGATTGAAGATCAATACGAGAATCCATGTTTG-TCTCAATTGAGT
64 TGGTGCCTAATCTTGAAA-A-GAATG-GGATTAGTATGAGTATTCATGTTTGCT-TTATTTAAG-
* * ** * * *
3173721 A-ATGAAGC-TAAACTTTA-CAAAAATTGGTGGGAA-
124 AGA-CAAACTTTGATTTTATCAAAAA-CGGTGGAAAG
* * * * * * *
3173754 AAAA-CCTTTCTTGCAAAACCAAAGCA-CTAATATCGTGTATCCTAATGAGAA--GACTATGTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATC-AATGTCATGTATCCT-ATTA-AAGGGAATGTGTTT
* **
3173815 ATGGTGCCTAATCTTGAAAAAAAAAAGGATTAGTATGAGTATTCATGTTTG-TCTTATTTAAGAG
63 ATGGTGCCTAATCTTG-AAAAGAATGGGATTAGTATGAGTATTCATGTTTGCT-TTATTTAAGAG
* * * *
3173879 ATAAACTATGATTCTATTAAAAACGGT-GAAAG
126 ACAAACTTTGATTTTATCAAAAACGGTGGAAAG
* * * * * *
3173911 AAAAGCTTCTCTCGCGACACCAAAGCAT-AATTGTCTTGTAATCCTAATT-AAGGAAATGTCTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAA-TGTCATGT-ATCCT-ATTAAAGGGAATGTGTTT
* * * * * * * * * *
3173974 -TAAGTTCCCAATCCTGAAAATAATGGAGACTATTATGAG-AATCAACGCTTTTC-TTATTTAAG
63 AT-GGTGCCTAATCTTGAAAAGAATGG-GATTAGTATGAGTATTC-ATG-TTTGCTTTATTTAAG
* * ** * ** * *
3174036 GGATAAACAATGATGTTAAGAAAAATAGG-GCAAA-
124 AGACAAACTTTGATTTTATCAAAAA-CGGTGGAAAG
* * * ** * * * * *
3174070 AAAAACATTTCCATGC-AAAGGAAAATCAACAATATCACT-TATCCTAATGAAA-AGAATGTGTT
1 AAAAGC-TTTTCTTGCGAAA-CCAAAGCATCAATGTCA-TGTATCCT-ATTAAAGGGAATGTGTT
* ** * * * * * * ** *
3174132 TATAGTGCCTAAT-TACAAAATGAATGATGATCATTACT-AGAATCCATTTTTG-TCCCATTTTA
62 TATGGTGCCTAATCTTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGCT-TTATTTAA
* * *
3174194 G-G-CATGAACTTAGACTTTA-CAAAAACTGGT-G-AGG
123 GAGACA--AACTTTGATTTTATCAAAAAC-GGTGGAAAG
* * * *
3174228 AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATT-GAGAGGACTATGTTTA
1 -AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATTAAAG-GGAATGTGTTTA
* * *
3174292 TGGTGCCTAATCTTAAAAAGAATGGCAATTAGTATGAGTATTCATGTTTATCTTT-TTTAAGAGA
64 TGGTGCCTAATCTTGAAAAGAATGG-GATTAGTATGAGTATTCATGTTT-GCTTTATTTAAGAGA
* *
3174356 AAAACTTTGATTCTATCAAAAACGGTGGAAAG
127 CAAACTTTGATTTTATCAAAAACGGTGGAAAG
* * * * * ** *
3174388 AAAAGCTTTTTTTACGACACCAAAGCTTTAATGTTTTGTATCCTA-AAGAAGGGAATGTGTTT-T
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATTA-AAGGGAATGTGTTTAT
* * *
3174451 CGGAT-CCTAGTCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGCTTTATTTAAAAGA
65 -GG-TGCCTAATCTTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGCTTTATTTAAGAGA
*
3174515 CAAACTTTGATTATATCAAAAACGG-GGAAAG
127 CAAACTTTGATTTTATCAAAAACGGTGGAAAG
* * * * *
3174546 AAAAGCTTTTCTTGCTACACCAAAGGATCGATTTCATGTATCCTATTAAAGGGAATGTGTTT-TA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTAT-
* *
3174610 GGTTCCCAATCTTGAAAAGAATGG
65 GGTGCCTAATCTTGAAAAGAATGG
3174634 AGACAGTTAC
Statistics
Matches: 991, Mismatches: 274, Indels: 182
0.68 0.19 0.13
Matches are distributed among these distances:
156 13 0.01
157 107 0.11
158 327 0.33
159 488 0.49
160 53 0.05
161 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
AAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTATG
GTGCCTAATCTTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGCTTTATTTAAGAGACAAA
CTTTGATTTTATCAAAAACGGTGGAAAG
Found at i:3174509 original size:476 final size:468
Alignment explanation
Indices: 3173352--3174519 Score: 1301
Period size: 476 Copynumber: 2.5 Consensus size: 468
3173342 CGGATCTTAG
* * * * *
3173352 TCTTGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGCTTTATTTAAAAGACAAACTTTGAT
1 TCTTAAAAAGAAT--GGATTAGTATGAGTATTCATGTTTTCTTT-TTTAAGAGAAAAACTTTGAT
* * * * * *
3173417 TTTATCAAAAACGGTGGAAATAAAAGCTTTTCTTGCTACACCAAAGAATCAATGTCATGTATCCT
63 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG-CTTAATGTCTTGTATCCT
* * *
3173482 ATTAAAGGGAATGTGTTTATGGTCCCAAATCTTGAAAAGAATGGAGACT-GTTATGGGAATTGAT
127 A-AAAAGGGAATGTGTTT-TGGT-CCAAATCTTGAAAAGAATGGAGACTAG-TATGAGAATTAAT
* * ** * * **
3173546 GCTTG-TTTTTTTAAGAGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGTAACGATTTCCATG
188 GTTTGCTTTATTTAAGAGATAAACAATGATGTTAAGAAAAATAAGGCAAAAAAACGATTTCCATG
** **
3173610 CAAAAGAAAATCATTAATATCAATTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAA
253 CAAAAGAAAATCAACAATATCAATTATCCTAATGAAAAGAATGTGTTTATAGTGCCTAATCAAAA
* * *
3173675 TATGATTGAAGATCAATACGAGAATCCATGTTTGTCTCAATTGAGTAATGAAGCTAAACTTTACA
318 TATGAATGAAGATCAATACGAGAATCCATGTTTGTCCCAATTGAGGAATGAAGCTAAACTTTACA
* *
3173740 AAAATTGGTGGGAAAAAACCTTTCTTGCAAAACCAAAGCACTAATATCGTGTATCCTAATGAGAA
383 AAAACTGGTGGGAAAAAACCTTTCTTGCAAAACCAAAGCACTAATATCATGTATCCTAATGAGAA
3173805 GACTATGTTTATGGTGCCTAA
448 GACTATGTTTATGGTGCCTAA
* * * * *
3173826 TCTTGAAAAAAAAAAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTATGAT
1 TCTT--AAAAAGAATGGATTAGTATGAGTATTCATGTTT-TCTTTTTTAAGAGAAAAACTTTGAT
* * * *
3173891 TCTATTAAAAACGGT-GAAAGAAAAGCTTCTCTCGCGACACCAAAGCATAATTGTCTTGTAATCC
63 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTAA-TGTCTTGT-ATCC
* * * * * * * * * *
3173955 TAATTAAGGAAATGTCTTTTAAGTTCCCAATCCTGAAAATAATGGAGACTATTATGAGAATCAAC
126 TAA-AAAGGGAATGTGTTTT--GGTCCAAATCTTGAAAAGAATGGAGACTAGTATGAGAATTAAT
* * *
3174020 GCTTTTC-TTATTTAAGGGATAAACAATGATGTTAAGAAAAATAGGGCAAAAAAAAC-ATTTCCA
188 G-TTTGCTTTATTTAAGAGATAAACAATGATGTTAAGAAAAATAAGGC-AAAAAAACGATTTCCA
* * *
3174083 TGCAAAGGAAAATCAACAATATCACTTATCCTAATGAAAAGAATGTGTTTATAGTGCCTAATTAC
251 TGCAAAAGAAAATCAACAATATCAATTATCCTAATGAAAAGAATGTGTTTATAGTGCCTAATCA-
* * * * * * * *
3174148 AAA-ATGAATGATGATCATTACTAGAATCCATTTTTGTCCCATTTTAGGCATGAA-CTTAGACTT
315 AAATATGAATGAAGATCAATACGAGAATCCATGTTTGTCCCAATTGAGGAATGAAGC-TAAACTT
* * * *
3174211 TACAAAAACTGGTGAGGAAAAAGCCTTTCTTGCGAAACCAAAGCA-TCAATGTCATGTATCCTAT
379 TACAAAAACTGGTG-GGAAAAAACCTTTCTTGCAAAACCAAAGCACT-AATATCATGTATCCTAA
*
3174275 TGAGAGGACTATGTTTATGGTGCCTAA
442 TGAGAAGACTATGTTTATGGTGCCTAA
3174302 TCTTAAAAAGAATGGCAATTAGTATGAGTATTCATGTTTATCTTTTTTAAGAGAAAAACTTTGAT
1 TCTTAAAAAGAATGG--ATTAGTATGAGTATTCATGTTT-TCTTTTTTAAGAGAAAAACTTTGAT
* * *
3174367 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTTTTACGACACCAAAGCTTTAATGTTTTGTATCCT
63 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC-TTAATGTCTTGTATCCT
* * * *
3174432 AAAGAAGGGAATGTGTTTTCGGATCCTAGTCTTGAAAAGAATAGG-GATTAGTATGAGTATTAAT
127 AAA-AAGGGAATGTGTTTT-GG-TCCAAATCTTGAAAAGAAT-GGAGACTAGTATGAGAATTAAT
* *
3174496 GTTTGCTTTATTTAAAAGACAAAC
188 GTTTGCTTTATTTAAGAGATAAAC
3174520 TTTGATTATA
Statistics
Matches: 571, Mismatches: 99, Indels: 46
0.80 0.14 0.06
Matches are distributed among these distances:
472 2 0.00
473 34 0.06
474 117 0.20
475 170 0.30
476 209 0.37
477 36 0.06
478 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (468 bp):
TCTTAAAAAGAATGGATTAGTATGAGTATTCATGTTTTCTTTTTTAAGAGAAAAACTTTGATTCT
ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTAATGTCTTGTATCCTAAAA
AGGGAATGTGTTTTGGTCCAAATCTTGAAAAGAATGGAGACTAGTATGAGAATTAATGTTTGCTT
TATTTAAGAGATAAACAATGATGTTAAGAAAAATAAGGCAAAAAAACGATTTCCATGCAAAAGAA
AATCAACAATATCAATTATCCTAATGAAAAGAATGTGTTTATAGTGCCTAATCAAAATATGAATG
AAGATCAATACGAGAATCCATGTTTGTCCCAATTGAGGAATGAAGCTAAACTTTACAAAAACTGG
TGGGAAAAAACCTTTCTTGCAAAACCAAAGCACTAATATCATGTATCCTAATGAGAAGACTATGT
TTATGGTGCCTAA
Found at i:3175768 original size:475 final size:473
Alignment explanation
Indices: 3174862--3176992 Score: 2440
Period size: 475 Copynumber: 4.5 Consensus size: 473
3174852 CCAATGAGAA
* ** * *
3174862 CAAAGCATCAATATTATGTATCCTAATGAGAACACTATG-TTATGGTGCCTAAT-CTCGCAAAGA
1 CAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCCT-GAAAAGA
* * * * * * *
3174925 ATGGGGATTAGAATGAGTATTCATGTTTGCCTTATTTAAGTGGCAAACATTGATTCTATCAAAAA
64 ATAGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * *
3174990 CGGTGGAAAGAAAAGCTTTTCTTCCT-ACACCAAAGCATCAAAGACTTGTATCCTAATAAAGGGA
129 CGGTGGAAAGAAAAGCTTTTCTT-GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
* * ** * *
3175054 ATGTGTTTTCGGTTCCCAATCTTGCAAAGAAT-GAGGACCGTTATGAGAATCAATGCTTGTCTTA
193 ATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGA-GACTATTATGAAAATCGATGCTTGTCTTA
* * * *
3175118 TTTAAACGG-CGAACTTTGATATTAAAGAAAATCA-GACAAAGAAAAGATTTCCATGCAAAAGAA
257 TTT-AAGGGATGAACTTTGAT-TTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
3175181 AATCATCAACATCATTTATCCTAATGAAGG-GAATGTGTTTATAGTGCCTAATAACAAAATGAAA
319 AATCATCAATATCATTTATCCTAATG-AGGAGAATGTGATTATAGTGCCTAATAGC-AAATGAAA
** * * *
3175245 GAAGATCATTACTAGAATCCTTGTTTGTCTCAATTGAGGGATGAACTTAGACTTTACAAAAATTG
382 GAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
** *
3175310 GTGGGAAAAAAGCCTTTCCAACAAAAT
447 GTGGGAAAAAAGCCTTTCTTACAAAAC
* * *
3175337 CAAAGCGCCAATATCGTGTATCCTAATGAGGAA-ACTATATTTATGGTGCTGAATCCTGAATAGA
1 CAAAGCACCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGGTGCT-AATCCTGAAAAGA
* * *
3175401 ACAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAA
64 ATAGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * * * *
3175466 TGGTGAAAAGAAAAGCATTTCTTGTGATACCAAAGCATTAATGTCATGTATCTTAATGAATGAAA
129 CGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * * * * *
3175531 TGTGTTTTAGGTTCCTAATCTTGAAAATAATGGATACTATTTTGAAAATCGATGTTTTTCTTATT
194 TGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAAAATCGATGCTTGTCTTATT
* * *
3175596 TAAGGGATGAACTTTCATTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCA
259 TAAGGGATGAACTTTGATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * *
3175661 ACAATATCACTTATCCTAATGAGGAGAATGTGATTGTAGTGCCTAATTAGCAAATGAATGAAGAT
324 TCAATATCATTTATCCTAATGAGGAGAATGTGATTATAGTGCCTAA-TAGCAAATGAAAGAAGAT
* * * *
3175726 CATTACTAGAATCTAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTAGGA
388 CATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* * *
3175791 AAAATGCCTTTCGTACGAAAC
453 AAAAAGCCTTTCTTACAAAAC
** * * *
3175812 CAAAATATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
1 CAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCCTGAAAAGAA
* * * * * *
3175877 TGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCAATAAAAAAC
65 TAGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * *
3175942 GGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATTAATGTGATGTATCCTAATGAAGGGAAT
130 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * * * * *
3176007 GTGTTTTTGGTTCCCAATGTTGAAAAGAGTGGAGATTGTTA-CAAGAATCGGTGCCTGTCTTATT
195 GTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAA-AATCGATGCTTGTCTTATT
* * * * * *
3176071 TCAGGGTTGAACTTTGATTTCAACGAAAATATGGCAAAAAAAAGATTTCAATGCAAAAGAAAAT-
259 TAAGGGATGAACTTTGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* *
3176135 GTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAATTGAAAGAAG
323 ATCAATATCATTTATCCTAATGAGGAGAATGTGATTATAGTGCCTAAT-AGCAAA-TGAAAGAAG
* * * * * *
3176199 ATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTATACTTTACAAAAGTTGATGG
386 ATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
*
3176264 GAAAAAA-CCTTTCTTGCAAAAC
451 GAAAAAAGCCTTTCTTACAAAAC
* * *
3176286 CAAAGCACCAATATCGTGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAT
1 CAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG-CTAATCCTGAAAAGAA
* * * * ** *
3176351 TAGGGATTAGTATGCATTTTCTTGTTTGTCTTATTTAAGAGAAAAACCGTGATTCTATCAAAAAA
65 TAGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * ** *
3176416 GGTGCAAAGAAAAGGTTTTCTTGCGACACCAAAGTATCAATGTTGTGTATCCTAATGGAGGGAAT
130 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * *
3176481 GCGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTATCCT-TTT
195 GTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAAAATCGATGCTTGTCTTATTT
* *
3176545 AAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGTAAAGATTTCCATGCAAAAGAAAATCA
260 AAGGGATGAACTTTGA-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * *
3176610 TCAATATCATTTATCCTAATGAGGAGAATG-CATTTATAGTGCCTAATCGAAAAATGAATGAAGA
324 TCAATATCATTTATCCTAATGAGGAGAATGTGA-TTATAGTGCCTAATAG-CAAATGAAAGAAGA
* * * * *
3176674 TCAATACTAGAATCCAAGTTTGACTCATTTGAGGCAGGAACTTAGACTTTTCGAAAATTGGTGGG
387 TCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* ** ***
3176739 AATAGTGCCTTTCTTGTGAAAC
452 AAAAAAGCCTTTCTTACAAAAC
* * * * * *
3176761 GAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATAGTGCATAATCCTCAAAAGAA
1 CAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC-TAATCCTGAAAAGAA
* * * *
3176826 TAGGGATTAGTA-AAAGTATTAATGTTTG-CTTTATTTAAGAGACAAGCTTTGATTATATCAAAA
65 TAGGGATTAGTATGAA-TATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * * * *
3176889 ATGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCGATGTCATGTATCCTATTGAAAGGA
128 ACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
* *
3176954 ATGTGTTTTAGGTTCCCAATCTTTAAAAGCATGGAGACT
193 ATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACT
3176993 GTTACGAGAA
Statistics
Matches: 1386, Mismatches: 244, Indels: 52
0.82 0.15 0.03
Matches are distributed among these distances:
473 54 0.04
474 355 0.26
475 748 0.54
476 225 0.16
477 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
CAAAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCTAATCCTGAAAAGAAT
AGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
GTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
TGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAAAATCGATGCTTGTCTTATTTA
AGGGATGAACTTTGATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
AATATCATTTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATAGCAAATGAAAGAAGATCAT
TACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
AAGCCTTTCTTACAAAAC
Found at i:3176708 original size:949 final size:948
Alignment explanation
Indices: 3174862--3177004 Score: 2713
Period size: 949 Copynumber: 2.3 Consensus size: 948
3174852 CCAATGAGAA
* * * * * *
3174862 CAAAGCATCAATATTATGTATCCTAATGAGAACACTATG-TTATGGTGCCTAAT-CTCGCAAAGA
1 CAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT-GAAAAGA
* * *
3174925 ATGGGGATTAGAATGAGTATTCATGTTTGCCTTATTTAAGTGGCAAACATTGATTCTATCAAAAA
65 ATGGGGATTAGAATGAGTATTCATGTTTG-CTTATTTAAGAGACAAAC-TTGATTCAATCAAAAA
* * * * *
3174990 CGGTGGAAAGAAAAGCTTTTCTTCCT-ACACCAAAGCATCAAAGACTTGTATCCTAATAAAGGGA
128 CGGTGGAAAGAAAAGCTTTTCTT-ATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
* * * * *
3175054 ATGTGTTTTCGGTTCCCAATCTTGCAAAGAAT-GAGGACCGTTATGAGAATCAATGCTTGTCTTA
192 ATGTGTTTTAGGTTCCCAATCTTGAAAAG-ATGGA-GACTGTTACGAGAATCAATGCCTGTCTTA
* *
3175118 TTTAAACGGCGAACTTTGATATTAAAGAAAATCAGACAAAGAAAAGATTTCCATGCAAAAGAAAA
255 TTTAAACGGCGAACTTTGATATTAAAGAAAATCAGACAAAAAAAAGATTTCAATGCAAAAGAAAA
3175183 TCATCAACATCATTTATCCTAATGAAGGGAATGTGTTTATAGTGCCTAATAACAAAATGAAAGAA
320 TCATCAACATCATTTATCCTAATGAAGGGAATGTGTTTATAGTGCCTAATAACAAAATGAAAGAA
* * * * * *
3175248 GATCATTACTAGAATCCTTGTTTGTCTCAATTGAGGGATGAACTTAGACTTTACAAAAATTGGTG
385 GATCATTACTAGAATCCATGTTTATCTCAATTAAGGCACGAACTTAGACTTTACAAAAATTGATG
* * *
3175313 GGAAAAAAGCCTTTCCAACAAAATCAAAGCGCCAATATCGTGTATCCTAATGAGGAAACTATATT
450 GGAAAAAAGCCTTTCCAACAAAACCAAAGCACCAATATCGTGTATCCTAATGAGGAAACAATATT
*
3175378 TATGGTGCTGAATCCTGAATAGAACAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAAGAG
515 TATGGTGCTGAATCCTGAAAAGAACAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAAGAG
* ** * * * * *
3175443 ACAAACTTTTATTCTATCAAAAATGGTGAAAAGAAAAGCATTTCTTGTGATACCAAAGCATTAAT
580 AAAAACCGTGATTCTATCAAAAAAGGTGAAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAAT
* * * * * * *
3175508 GTCATGTATCTTAATGAATGAAATGTGTTTTAGGTTCCTAATCTTGAAAATAATGGATACTATTT
645 GTCATGTATCCTAATGAAGGAAATGCGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTATTA
* * * * *
3175573 TGAAAATCGATGTTTTTCTTATTTAAGGGATGAACTTTCATTTATGGAAAATAGGGCAAAGAAAA
710 TGAAAATCGATGCTTATCCTATTTAAGGGATGAACTTTAATTTAAGGAAAATAGGGCAAAGAAAA
* * *
3175638 GATTTCCATGTAAAAGAAAATCAACAATATCACTTATCCTAATGAGGAGAATGTGATTGTAGTGC
775 GATTTCCATGCAAAAGAAAATCAACAATATCACTTATCCTAATGAGGAGAATGTCATTATAGTGC
* * * * * *
3175703 CTAATTAGCAAATGAATGAAGATCATTACTAGAATCTAAGTTTGTCTTATTTGAGGCACGAACTT
840 CTAATGAGAAAATGAATGAAGATCAATACTAGAATCCAAGTTTGACTCATTTGAGGCACGAACTT
3175768 AGACTTTAT-AAAAATTGGTAGGAAAAATGCCTTTCGTACGAAAC
905 AGACTTT-TCAAAAATTGGTAGGAAAAATGCCTTTCGTACGAAAC
* *
3175812 CAAAATATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
1 CAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
* * *
3175877 TGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCAATAAAAAAC
66 TGGGGATTAGAATGAGTATTCATGTTTG-CTTATTTAAGAGACAAACTT-GATTCAATCAAAAAC
* *
3175942 GGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATTAATGTGATGTATCCTAATGAAGGGAAT
129 GGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * **
3176007 GTGTTTTTGGTTCCCAATGTTGAAAAGAGTGGAGATTGTTACAAGAATCGGTGCCTGTCTTATTT
194 GTGTTTTAGGTTCCCAATCTTGAAAAGA-TGGAGACTGTTACGAGAATCAATGCCTGTCTTATTT
* * * * *
3176072 -CAGGGTTGAACTTTGAT-TTCAACGAAAAT-ATGGCAAAAAAAAGATTTCAATGCAAAAGAAAA
258 AAACGG-CGAACTTTGATATT-AAAGAAAATCA-GACAAAAAAAAGATTTCAATGCAAAAGAAAA
* * * *
3176134 T-GTCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAATTGAAAGA
320 TCATCAACATCATTTATCCTAATGAAGG-GAATGTGTTTATAGTGCCTAATAACAAAATGAAAGA
* * *
3176197 AGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTATACTTTACAAAAGTTGAT
384 AGATCATTACTAGAATCCATGTTTATCTCAATTAAGGCACGAACTTAGACTTTACAAAAATTGAT
*** *
3176262 GGGAAAAAA-CCTTTCTTGCAAAACCAAAGCACCAATATCGTGTATCCTAATGA-GAAGACAATG
449 GGGAAAAAAGCCTTTCCAACAAAACCAAAGCACCAATATCGTGTATCCTAATGAGGAA-ACAATA
* ** * * * *
3176325 TTTATGGTGCCT-AATCTTGAAAAGATTAGGGATTAGTATGCATTTTCTTGTTTGTCTTATTTAA
513 TTTATGGTG-CTGAATCCTGAAAAGAACAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAA
* ** *
3176389 GAGAAAAACCGTGATTCTATCAAAAAAGGTGCAAAGAAAAGGTTTTCTTGCGACACCAAAGTATC
577 GAGAAAAACCGTGATTCTATCAAAAAAGGTGAAAAGAAAAGCATTTCTTGCGACACCAAAGCATC
** * * *
3176454 AATGTTGTGTATCCTAATGGAGGGAATGCGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
642 AATGTCATGTATCCTAATGAAGGAAATGCGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTA
*
3176519 TTATGAGAATCGATGCTTATCCT-TTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAG
707 TTATGAAAATCGATGCTTATCCTATTTAAGGGATGAACTTTAA-TTTAAGGAAAATAGGGCAAAG
* * *
3176583 TAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG-CATTTAT
771 AAAAGATTTCCATGCAAAAGAAAATCAACAATATCACTTATCCTAATGAGGAGAATGTCA-TTAT
*
3176647 AGTGCCTAATCGA-AAAATGAATGAAGATCAATACTAGAATCCAAGTTTGACTCATTTGAGGCAG
835 AGTGCCTAAT-GAGAAAATGAATGAAGATCAATACTAGAATCCAAGTTTGACTCATTTGAGGCAC
* * * * * **
3176711 GAACTTAGACTTTTCGAAAATTGGTGGGAATAGTGCCTTTCTTGTGAAAC
899 GAACTTAGACTTTTCAAAAATTGGTAGGAAAAATGCCTTTCGTACGAAAC
* * * * * *
3176761 GAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATAGTG-CATAATCCTCAAAAGA
1 CAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCA-AATCCTGAAAAGA
* * * *
3176825 ATAGGGATTAGTAA-AAGTATTAATGTTTGCTTTATTTAAGAGACAAGCTTTGATT-ATATCAAA
65 ATGGGGATTAG-AATGAGTATTCATGTTTGC-TTATTTAAGAGACAAAC-TTGATTCA-ATCAAA
* ** * * * *
3176888 AATGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCGATGTCATGTATCCTATTGAAAGG
126 AACGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
*
3176953 AATGTGTTTTAGGTTCCCAATCTTTAAAAGCATGGAGACTGTTACGAGAATC
191 AATGTGTTTTAGGTTCCCAATCTTGAAAAG-ATGGAGACTGTTACGAGAATC
3177005 TGGTAGGATC
Statistics
Matches: 1025, Mismatches: 146, Indels: 45
0.84 0.12 0.04
Matches are distributed among these distances:
948 27 0.03
949 597 0.58
950 169 0.16
951 228 0.22
952 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (948 bp):
CAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
TGGGGATTAGAATGAGTATTCATGTTTGCTTATTTAAGAGACAAACTTGATTCAATCAAAAACGG
TGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
GTTTTAGGTTCCCAATCTTGAAAAGATGGAGACTGTTACGAGAATCAATGCCTGTCTTATTTAAA
CGGCGAACTTTGATATTAAAGAAAATCAGACAAAAAAAAGATTTCAATGCAAAAGAAAATCATCA
ACATCATTTATCCTAATGAAGGGAATGTGTTTATAGTGCCTAATAACAAAATGAAAGAAGATCAT
TACTAGAATCCATGTTTATCTCAATTAAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAA
AAGCCTTTCCAACAAAACCAAAGCACCAATATCGTGTATCCTAATGAGGAAACAATATTTATGGT
GCTGAATCCTGAAAAGAACAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAAGAGAAAAAC
CGTGATTCTATCAAAAAAGGTGAAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATG
TATCCTAATGAAGGAAATGCGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAAAA
TCGATGCTTATCCTATTTAAGGGATGAACTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTC
CATGCAAAAGAAAATCAACAATATCACTTATCCTAATGAGGAGAATGTCATTATAGTGCCTAATG
AGAAAATGAATGAAGATCAATACTAGAATCCAAGTTTGACTCATTTGAGGCACGAACTTAGACTT
TTCAAAAATTGGTAGGAAAAATGCCTTTCGTACGAAAC
Found at i:3177330 original size:13 final size:13
Alignment explanation
Indices: 3177312--3177336 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3177302 CATTATGCTT
3177312 TGTATCGATACAA
1 TGTATCGATACAA
3177325 TGTATCGATACA
1 TGTATCGATACA
3177337 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3177450 original size:20 final size:21
Alignment explanation
Indices: 3177406--3177455 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
3177396 CTACCACTAT
*
3177406 TTGTATCGATACATGGCACAA
1 TTGTATCGATACATGGAACAA
*
3177427 -TGTATCGATACAT-GAAGAA
1 TTGTATCGATACATGGAACAA
3177446 TTGTATCGAT
1 TTGTATCGAT
3177456 GCATTGGCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (21 bp):
TTGTATCGATACATGGAACAA
Found at i:3179817 original size:475 final size:476
Alignment explanation
Indices: 3178927--3182900 Score: 4432
Period size: 475 Copynumber: 8.4 Consensus size: 476
3178917 ATCCAAAACA
** * * * * * ** * *
3178927 GTGCCTAATCCCGAAAA-AATGGGGACTAGTTTAAGTAATCATGTTTCTAGTATATAAGAGAAAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * **
3178991 ATTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTCTGACACCAAAGCTTCAATGTCA
66 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCTTCAATGTCA
* * ** * *
3179056 TGTATCCTGATAAAGGGAATGTGTTTTCCGTTTCCAAT-TCTGAAAATGGCAT--AGACTGTTAC
131 TGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT-TGAAAA--GAATGGAGACTGTTAC
* * * * *
3179118 GAGAATCGATGCTTGTCTTATTTAAAGGATAAACTATAATTTTCAGGAAAATAGGGCAACGAAAA
193 GAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * *
3179183 GATTTCCATGCAAAATAAAATCACCAATATCGCTTATCCTAATGA-AAGAAATGTGTTTATAGTG
258 GATTTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAG-AATGTGTTTATAGTG
* * * ** *
3179247 CCTAATCACAAAATGAATGACGATCATTACTAGAATCAATATTTGTCTCATTTGAGGTGCAAACT
322 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * ** *
3179312 TAAACTTTATAAAAATTGGTCGGG-AAAAAGCCTTTTTTGCGGAACCAAAGCATCAATGTCGTGT
387 TAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGT
*
3179376 ATCCTAATGAGAAGACTATGATTATG
451 ATCCTAATGAGAAGACTATGTTTATG
* **
3179402 GTGCCTAATCCTAAAAAGAATGGGGACTAGTATGAGTATTTGTGTTTGTCTTATTTAAGAGACAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
3179467 ACTTTGATTCTATCAAAAATGGT-GAAAGGAAAAGCTTTTCTTGAGACACCAAAGCTTCAATGTC
66 ACTTTGATTCTATCAAAAATGGTGGAAA-GAAAAGCTTTTCTTGAGACACCAAAGCTTCAATGTC
* ** *
3179531 ATGTATACTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGG
130 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * * * *
3179596 GAATTGATGCTTGTCTT-TTTAAGGGCTAAACTTTTATTTTAAGGAAAGTAGGGCAAAGTAAAGA
195 GAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* *
3179660 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
260 TTTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * *
3179725 AATCAAAAAATGAATGAAGATCAATACTAGAATCCATGTTTGGCTCCTTTAAGGTGCA-G-ACTT
325 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-G-GCACGAACTT
* *** * * *
3179788 AGAATTTACGTTAATTGGTGGGAAAAAAGCCTTTCTTGCAGAACCAAAGCATCAATATTGTGTGT
388 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTAT
* * * **
3179853 TCTTATGAGAAGACTACGTTTACA
453 CCTAATGAGAAGACTATGTTTATG
* * * * * *
3179877 GTGCCTAATCCTAAAAAGAAGGGGGATCAATATAAGTATTAATGTTTGTTTTATTTAAGAGACAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * *
3179942 ACTTTTATTCTATCAAAAATAGTGGAGAGAAAACCTTTTCTT-ATGACACCAAAACATCAATGTC
66 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGA-GACACCAAAGCTTCAATGTC
* * * * * *
3180006 AAGTATCCTAATGAAGGGAATGTGTTTTAGGTTTCCAATCTTTAAAAG-ATGGAGATTGTTACAA
130 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * * *
3180070 AAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT-AGGAAAATACGGCAAAGAAAAGA
195 GAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
*** * * * **
3180134 TTTCCATGTGGAAGAAAATCATTAATATCATTTATCCTAATGAGGATAATGTACTTATAGTGCCT
260 TTTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
3180199 AATCTCAAAATGAAAGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
325 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * *
3180264 ACTTTACAAAAATTAGAGGGTAAAAAA-CCTTAT-TTGCAAAACCAAAGCATCAATATCTTGTAT
390 ACTTTACAAAAATTGGTGGG-AAAAAAGCCTT-TCTTGCAAAACCAAAGCATCAATATCGTGTAT
* *
3180327 CCTAATGAAAACACTATGTTTATG
453 CCTAATGAGAAGACTATGTTTATG
* * * * * * * *
3180351 GTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGATTGCCTTATTTTAGAGGCAC
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
3180416 ACATTGATTCTATCAAAAACGGTGGAAAGAGAAA-CTTTTCTTG-CACACCAAAGCATCAATGTC
66 ACTTTGATTCTATCAAAAATGGTGGAAAGA-AAAGCTTTTCTTGAGACACCAAAGCTTCAATGTC
* * *
3180479 TTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTGTTATGA
130 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * *
3180544 GAATTGATGCTTGTCTTATTTAAAGGG-TAAACTTTGATCTTAAGGAAAATCGGGCAAAGAAAAG
195 GAATCGATGCTTGTCTTATTT-AAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* ** * * *
3180608 ATTTTCATGCAAAAGAAAATCATCAACGTCATTTACCCTAATGAGGGGAATGTG-TTATAGTGCC
259 ATTTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * ** * * *
3180672 CAATAACAAAATGAAAGAAGCCCATTACTAGAATCCACGTTTGTCACATTTAAGGCACGAACTTA
324 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * *
3180737 -ACCTTAC-AAAAGTGGTGGGAAAAATGCCTTTCTTGCAAAATCAAAGC-TCCAATATTGTGAAT
389 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCAT-CAATATCGTGTAT
* * *
3180799 CCAAATTAGAAGACTATTTTTATG
453 CCTAATGAGAAGACTATGTTTATG
* * * * * *
3180823 GTGCCTAATCCTGAAAATAATGGGGAATAGTATGAGTATTCATATTTATCTTATTTAGGAGACAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
3180888 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGGCA
66 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCTTCAATGTCA
* * * * * * *
3180953 TGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATATTGTAGAGTGTTTCGAG
131 TGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG
* * * *
3181018 AATCGATGCTTGTCTTATTTAAGGGATGAACCTTAATTTTAAGGAAAATAGGGCGAAGAAAAGAT
196 AATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * **
3181083 TTACATGCAAAAGAAAATCAACAGTATCACTTATCTTAAGGAGGAGAATGTGACTATAGTGCCTA
261 TTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
3181148 ATTACAAAATGAACGAAAATCATTACTACAATCCATTTTTGTC-CTACTTGAGGCACGAACTTAG
326 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC-ATTTGAGGCACGAACTTAG
* * * **
3181212 ACTTTAGAAAAATTGGTGGGAAAAATG-C--TCTTCGCACGAAACC-AAG-ATAACAATGTCACG
390 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-GCA--AAACCAAAGCAT--CAATATCGTG
* *
3181272 TATCCTAATGAGAAGCCTATGTTTATA
450 TATCCTAATGAGAAGACTATGTTTATG
* * * *
3181299 GTGCCTAATCTTGAAAAGAAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
3181364 ACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCA-ACACCAAAGCATT-AATGC
66 ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-AGACACCAAAGC-TTCAATGT
* * *
3181427 CATGTTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACA
129 CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * * *
3181492 AGAATTGGTGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCAAAAAAAAG
194 AGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * **
3181557 ATTTCCATGCAAAAAAAAAATCACCAATATCACTTATCCTAATGAAAAGAATGTGTTTATAGTGC
259 ATTTCCATGC-AAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
3181622 CTAATCACCAAATGAATGAAGATAATTACTAGAATCCACGTTTGTCTCATTTGAGGCTCGAACTT
323 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* *
3181687 AGACTTTACAAAAATTGGTGAGAAAAAA-CCTTTCTTGCAAAACCAAAGCATCAATGTCGTGTAT
388 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTAT
* * *
3181751 ACTAATAAGAAAACTATGTTTATG
453 CCTAATGAGAAGACTATGTTTATG
* * *
3181775 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATAAGTATTCATG--TGTCTT-TCTTAAGTGAAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT-TTAAGAGACA
* * *
3181837 AACTTTGATTCTATCAAAAAACGGTGGAAAAAAAAG-TTATTCTT-ACAACACCAAAGCTTCAAT
65 AACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTT-TTCTTGA-GACACCAAAGCTTCAAT
** * *
3181900 GTCATGTATCCTAAAAAAGGAAATGTGTTTATGG-TCCCAAATCTTGAAAAGAATGGAGACTGTT
127 GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCC-AATCTTGAAAAGAATGGAGACTGTT
* * * * * *
3181964 ATGAAAGAATTGATGCTTGTCTT-TTTAAGAGATAAGCTTTGATTTTAAAGAAAATAAGGCAAAG
191 ACG--AGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAG
** * * * *
3182028 TGAAGATTTCCAAGCAAAAGAAAATCATTAATATCAATTATCCTAAAGAGGAGAATGTGTTTATA
254 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATA
* * * * ** *
3182093 GTGCCTAATCA-AAAACTGAATGAAGATCAATACGAGAATCCATGTTTGTCTTAATTGAGTAATG
319 GTGCCTAATCACAAAA-TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
3182157 GAGTTAAACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCA-CTAATATC
383 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATC-AATATC
3182221 GTGTATCCTAATGAGAAGACTATGTTTATG
447 GTGTATCCTAATGAGAAGACTATGTTTATG
* ** * * *
3182251 GTGCCTAATCCTGAAAAAAAAAAGGGATTAGTATGAGTATTCTTGTTTGTCTTATTGAAGAGATA
1 GTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * *
3182316 AACTGTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCAT-AATTGT
65 AACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCTTCAA-TGT
* * * * ** * * * *
3182380 CTTGTAATCCTAATTAAGGAAATGTCTTTTAAGTTCCCAATCCTGAAAATAATGGAGATTGTTAT
129 CATGT-ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * ** * * * *
3182445 GAGAATCAACGCTTTTCTTATTTAAGGGATAAACAATGATGTTAAGAAAAATATGGCAAAAAAAA
193 GAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
3182510 GATTTCCATGTAAAGGAAAATCAACAATATCACTTATCCTAAT-----GAATGTGCTTATATTGC
258 GATTTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
3182570 CTAATTACAAAATGAATGATGATCATTACTAGAATCCATTTTTGTCCCATTTGAGGCACGAACTT
323 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * ** * * *
3182635 AGACTTTACAAAAACTGGTGGGGAAAAAGCCTTTCTTGTGAAACCAAAGCAACAATGTCATGTAT
388 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTAT
*
3182700 CCTAATGAGAGGACTATGTTTATG
453 CCTAATGAGAAGACTATGTTTATG
* ** * *
3182724 GTGCCTAATCTTAAAAA-AATGGCAATTAGTGTGAGTATTCATGTTTATCCTT-TTTAAGAG--A
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT-CTTATTTAAGAGACA
* *
3182785 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT-ACGACACCAAAGCTTTAATGT
65 AACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGA-GACACCAAAGCTTCAATGT
** * * * * * *
3182849 TTTGTATCCTAAAGAAGGGAATGTGTTTTCGGATCCTAGTCTGGAAAAGAAT
129 CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
3182901 AGGGATTAGT
Statistics
Matches: 2939, Mismatches: 488, Indels: 151
0.82 0.14 0.04
Matches are distributed among these distances:
468 35 0.01
469 59 0.02
470 2 0.00
471 41 0.01
472 162 0.06
473 396 0.13
474 524 0.18
475 697 0.24
476 634 0.22
477 190 0.06
478 116 0.04
479 78 0.03
480 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCTTCAATGTCA
TGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAG
AATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCT
AATGAGAAGACTATGTTTATG
Found at i:3180613 original size:158 final size:159
Alignment explanation
Indices: 3180298--3180675 Score: 351
Period size: 158 Copynumber: 2.4 Consensus size: 159
3180288 AAACCTTATT
* *** * * *
3180298 TGCAAAACCAAAGCATCAATATCTTGTATCCTAATGAAAACACTATGTTTATGGTGCCTAATCTT
1 TGCAAAACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTATGGTGCCCAATCTT
* * * *
3180363 GAAAAGAATAGGGATTAGTATGAGTATTCATGATTGCCTTATTTTAGAGGCACACATTGATTCTA
66 GAAAAGAATAGGGACTAGTATGAGAATTCATGATTGCCTTATTTAAGAGGCAAACATTGATTCTA
* * * *
3180428 TCAAAAACGGTGGAAAGAGAAACTTTTCT
131 TAAAAAACGGTGCAAAGAGAAAATTTTCA
* * *
3180457 TGC-ACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT
1 TGCAAAACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTATGGTGCCCAATCTT
* * * * * *
3180521 GAAAAGAATGGGGACT-GTTATGAGAATTGATGCTTGTCTTATTTAA-AGGGTAAACTTTGA-TC
66 GAAAAGAATAGGGACTAG-TATGAGAATTCATGATTGCCTTATTTAAGA-GGCAAACATTGATTC
3180583 T-TAAGGAAAATCGG-GCAAAGA-AAAGATTTTCA
129 TATAA--AAAA-CGGTGCAAAGAGAAA-ATTTTCA
** * * * * *
3180615 TGCAAAAGAAAATCATCAACGTCATT-TACCCTAATGAGGGGAATGTG-TTATAGTGCCCAAT
1 TGCAAAACCAAAGCATCAATGTC-TTGTATCCTAATGAAGGGAATGTGTTTATGGTGCCCAAT
3180676 AACAAAATGA
Statistics
Matches: 177, Mismatches: 34, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 8 0.05
158 126 0.71
159 39 0.22
160 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (159 bp):
TGCAAAACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTATGGTGCCCAATCTT
GAAAAGAATAGGGACTAGTATGAGAATTCATGATTGCCTTATTTAAGAGGCAAACATTGATTCTA
TAAAAAACGGTGCAAAGAGAAAATTTTCA
Found at i:3182837 original size:156 final size:158
Alignment explanation
Indices: 3182659--3183055 Score: 371
Period size: 159 Copynumber: 2.5 Consensus size: 158
3182649 CTGGTGGGGA
* * * *
3182659 AAAAGCCTTTCTTGTGAAACCAAAGCAACAATGTCATGTATCCTAATG-AGAGGACTATGTTTAT
1 AAAAGCCTTTCTTGCGACACCAAAGCAACAATGTCATGTATCCTAAAGAAG-GGAATATGTTT-T
* * * *
3182723 -GG-TGCCTAATCT-TAAAAAAAT-GGCAATTAGTGTGAGTATTCATGTTTATCCTT-TTT-AAG
64 CGGAT-CCTAATCTGGAAAAAAATAGG-AATTAGTATGAGTATTAATGTTT-GCCTTATTTAAAG
* * *
3182782 AGAAACTTTGATTCTATCAAAAACGGTGGAAAG
126 ACAAACTTTCATTATATCAAAAACGGTGGAAAG
* * *** ** *
3182815 AAAAGCTTTTCTTACGACACCAAAGCTTTAATGTTTTGTATCCTAAAGAAGGGAATGTGTTTTCG
1 AAAAGCCTTTCTTGCGACACCAAAGCAACAATGTCATGTATCCTAAAGAAGGGAATATGTTTTCG
* * * *
3182880 GATCCTAGTCTGGAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGCTTTATTTAAAAGACAA
66 GATCCTAATCTGGAAAAAAATAGGAATTAGTATGAGTATTAATGTTTGCCTTATTT-AAAGACAA
3182945 ACTTTCATTATATCAAAAACGGTGGAAAG
130 ACTTTCATTATATCAAAAACGGTGGAAAG
* * * * *
3182974 AAAAGCCTTTCTTGCTACACCAAAG-AATCGATGTCATGTATCTTATTA-AAGGGAATGTGTTTT
1 AAAAGCCTTTCTTGCGACACCAAAGCAA-CAATGTCATGTATCCTA-AAGAAGGGAATATGTTTT
* * *
3183037 AGGTTCCCAATCTTGGAAA
64 CGGATCCTAATC-TGGAAA
3183056 GAATGGAGAC
Statistics
Matches: 192, Mismatches: 38, Indels: 18
0.77 0.15 0.07
Matches are distributed among these distances:
155 1 0.01
156 59 0.31
157 33 0.17
158 2 0.01
159 90 0.47
160 7 0.04
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (158 bp):
AAAAGCCTTTCTTGCGACACCAAAGCAACAATGTCATGTATCCTAAAGAAGGGAATATGTTTTCG
GATCCTAATCTGGAAAAAAATAGGAATTAGTATGAGTATTAATGTTTGCCTTATTTAAAGACAAA
CTTTCATTATATCAAAAACGGTGGAAAG
Found at i:3183084 original size:159 final size:159
Alignment explanation
Indices: 3182779--3183096 Score: 347
Period size: 159 Copynumber: 2.0 Consensus size: 159
3182769 TATCCTTTTT
* * * * ** *
3182779 AAGAGAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCTTT
1 AAGACAAACTTTCATTATATCAAAAACGGTGGAAAGAAAAGCCTTTCTTACGACACCAAAGAATC
** * * * *
3182844 AATGTTTTGTATCCTAAAGAAGGGAATGTGTTTTCGGATCCTAGTCTGGAAAAGAATAGGGATTA
66 AATGTCATGTATCCTAAAGAAGGGAATGTGTTTTAGGATCCCAATCTGGAAAAGAATAGGGATCA
* * *
3182909 GTATGAGTATTAATGTTTGCTTTATTTAA
131 GTACGAGAATCAATGTTTGCTTTATTTAA
* *
3182938 AAGACAAACTTTCATTATATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCTACACCAAAGAATC
1 AAGACAAACTTTCATTATATCAAAAACGGTGGAAAGAAAAGCCTTTCTTACGACACCAAAGAATC
* * * *
3183003 GATGTCATGTATCTTATTA-AAGGGAATGTGTTTTAGGTTCCCAATCTTGG-AAAGAAT-GGAGA
66 AATGTCATGTATCCTA-AAGAAGGGAATGTGTTTTAGGATCCCAATC-TGGAAAAGAATAGG-GA
* **
3183065 -CAGTTACGAGAATCGATGTTTTTTTTATTTAA
128 TCAG-TACGAGAATCAATGTTTGCTTTATTTAA
3183097 GGTATGTACT
Statistics
Matches: 130, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
158 4 0.03
159 122 0.94
160 4 0.03
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (159 bp):
AAGACAAACTTTCATTATATCAAAAACGGTGGAAAGAAAAGCCTTTCTTACGACACCAAAGAATC
AATGTCATGTATCCTAAAGAAGGGAATGTGTTTTAGGATCCCAATCTGGAAAAGAATAGGGATCA
GTACGAGAATCAATGTTTGCTTTATTTAA
Found at i:3184186 original size:475 final size:474
Alignment explanation
Indices: 3183290--3185424 Score: 2494
Period size: 475 Copynumber: 4.5 Consensus size: 474
3183280 CTAATGAGAA
** * *
3183290 CAAAGCATCAATATTATGTATCCTAATGAGAACACTATG-TTATGGTGCCTAAT-CTCGCAAAGA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT-GAAAAGA
* * * * * *
3183353 ATGGGGATTAGAATGAGTATTCATGTTTGCCTTATTTAAGTGGCAAACATTGATTCTATCAAAAA
65 ATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * *
3183418 CGGTGGAAAGAAAAGCTTTTCTTCCT-ACACCAAAGCATCAAAGACTTGTATCCTAATAAAGGGA
130 TGGTGGAAAGAAAAGCTTTTCTT-GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
* * * * *
3183482 AAGTGTTTTTA-GTTCCCAATCTTGCAAGGAAT-GAGGA-TAGTCACGAGAATCAATGCTTGTCT
194 ATGTG-TTTTAGGTTCCCAATCTTGAAAAGAATGGA-GACT-GTTACGAGAATCGATGCTTGTCT
* * * * * *
3183544 TATTTAA-ACGACGAACTTTGATATTAAGGAAAATCAGACAAAGAAATGATTTCCAAGCAAAAGA
256 TATTTAAGA-GATGAACTTTAAT-TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
3183608 AAATCATCAACATCATTTATCTTAATGAAGG-GAATGT-TTTATAGTGCCTAATAACAAAATGAA
319 AAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATAGC-AAATGAA
** *
3183671 AGAAGATCATTACTAGAATCCTTGTTTGTCTCAATTGAGGCATGAACTTAGACTTTACAAAAATT
382 AGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
*
3183736 GGTGGGAAAAAAGCCTTTCCTACAAAAT
447 GGTGGGAAAAAAGCCTTTCTTACAAAAT
* * * * *
3183764 CAAAGCACCAATATCGTGTATCCTTATGAGAAAACTATATCTATGGTG-CTGAATCCTGAATAGA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCT-AATCCTGAAAAGA
* *
3183828 ATAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
65 ATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * *
3183893 TGGTGAAAAGAAAAGCTTTTCTTGTGATACCAAAGCATCAATGTCATGTATCTTAATGAAGGAAA
130 TGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * * * ** *
3183958 TCTGTTTTAGGTTCCTAATCTTGAAAATAATGCAGACTGTTTTGAAAATCGATGCTTGTCTTATT
195 TGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATT
* * * *
3184023 TTAGTGATGAACTTTAATTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCA
260 TAAGAGATGAACTTTAATTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * * *
3184088 ACAATATCACTGATCCTAATGAGGAGAATGTGATTGTAGTGCCTAAGTAGCAAATGAATGAAGAT
325 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA-TAGCAAATGAAAGAAGAT
* * * * *
3184153 CATTATTAGAATCTAAGTTTGTTTTATTTGAGGCATGAACTTAGACTTTATAAAAATTGGTGGG-
389 CATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
* * * *
3184217 AAAATGCTTTTCGTACGAAAT
454 AAAAAGCCTTTCTTACAAAAT
** * * * *
3184238 CAAAATATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * *
3184303 TATGGATTAGCATGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT
66 TAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
*
3184368 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTGATGTATCCTAATGAAGGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * *
3184433 GTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGATTGTTACGAGAATC-AGTGCTTGTCTTATT
196 GTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA-TGCTTGTCTTATT
* * *
3184497 TAAGAGATGAACTTTGATTTTAAGGAAAA-AATGGCGAAAAAAAAGATTTCAATGCAAAAGAAAA
260 TAAGAGATGAACTTT-AATTTAAGGAAAATAA-GGC-AAAGAAAAGATTTCCATGCAAAAGAAAA
*
3184561 -CGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAATTGAAAGA
322 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT-AGCAAA-TGAAAGA
* * * * *
3184624 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAGTTGAT
385 AGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* ** *
3184689 GGGAAAAAAGCCTTTGTTGTAAAAC
450 GGGAAAAAAGCCTTTCTTACAAAAT
* * * * *
3184714 CAAAGCACCAATATCGTGTATCCTCATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAT
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * *
3184779 TAGGGATTAGTATGCGTTTTCGTTTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAAAAAA
66 TAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* * * * ** *
3184843 AGTGGAGAGAAAAGCTTTTCTTGCGACACCAAAGTATCAATGTTGTGTATCCTAATGGAGGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * *
3184908 GTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTATTATGAGAATCGATGCTTGTCTT-TTT
196 GTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT
* * *
3184972 AAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAGAAAATCA
261 AAGAGATGAACTTTAA-TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * *
3185037 TCAATATCATTTATCATAATGAGGAGAATGCGTTTATAGTGCCTAATCGAAAAATGAATGAAGAT
325 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATAG-CAAATGAAAGAAGAT
* * * * * *
3185102 CAATACTAGAATCCAAGTTTGGCTCATTAGAGGTAGGAACTTAGACTTTTCAAAAATTGGTGGGA
389 CATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
* ** ***
3185167 ATAGTGCCTTTCTTGTGAAA-
454 AAAAAGCCTTTCTTACAAAAT
* * *
3185187 CGAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTCAAAAGA
1 C-AAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * * *
3185252 AT-GAGGATTAGTAAGAGTATTAATGTTTG-CTTTATTTAAGAGACAAGCTTTGATTATATAAAA
65 ATAG-GGATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * * * **
3185315 AATAGTGGAAAAAAAAGCCTTTCTTGTGACACTAAAGCATCGATGTCATGTATCCTTTTGAAGGG
128 AATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
** *
3185380 AATGTGTTTTAGGTTTGCAATCTTTAAAA-ATATGGAGACTGTTAC
193 AATGTGTTTTAGGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTAC
3185425 AGGAATCTGT
Statistics
Matches: 1405, Mismatches: 226, Indels: 59
0.83 0.13 0.03
Matches are distributed among these distances:
473 33 0.02
474 610 0.43
475 623 0.44
476 139 0.10
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
CAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAA
TAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
GTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT
AAGAGATGAACTTTAATTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATAGCAAATGAAAGAAGATCA
TTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA
AAAGCCTTTCTTACAAAAT
Found at i:3184457 original size:159 final size:156
Alignment explanation
Indices: 3183764--3185388 Score: 439
Period size: 158 Copynumber: 10.3 Consensus size: 156
3183754 CCTACAAAAT
* * ** * * * * *
3183764 CAAAGCACCAATATCGTGTATCCTTATGAGAAAACTATATCTATGGTG-CTGAATCCTGAATAGA
1 CAAAGCATCAATAT-GTGTATCCTAATGAGGGAA-TGTGTTTATGGTGCCT-AATCTTGAAAAGA
* * * *
3183828 ATAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
63 ATAGGGATTAGCATG-ATATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATAAAAAA
* *
3183893 TGGTGAAAAGAAAAGCTTTTCTTGTGATAC
127 TGGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * * * * *
3183923 CAAAGCATCAATGTCATGTATCTTAATGAAGGAAATCTGTTT-TAGGTTCCTAATCTTGAAAATA
1 CAAAGCATCAATAT-GTGTATCCTAATG-AGGGAATGTGTTTAT-GGTGCCTAATCTTGAAAAGA
* * ** * * * * * * * **
3183987 AT-GCAGACT-GTTTTGAAAATCGATGCTTGTCTTATTTTAGTGATGAACTTTAATT-TATGGAA
63 ATAG-GGATTAG-CATGATATTC-ATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATAAAA
* * * * * * *
3184049 AATAAG-GCAAAGAAAAGATTTCCATGTAAAAG
125 AAT-GGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * * * * * * * *
3184081 AAAATCAACAATATCACTG-ATCCTAATGAGGAGAATGTGATTGTAGTGCCTAA-GTAGCAAATG
1 CAAAGCATCAATAT--GTGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCTTG-AAAAG
* * ** * * * * * * * *
3184144 AAT-GAAGATCATTATTAGAATCTAAGTTTGTTTTATTTGAG-GCATGAACTTAGACTT-TATAA
62 AATAG-GGATTAGCATGATATTC-ATGTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTCTATAA
* * ** *
3184206 AAATTGGTGG---GAAAATGCTTTTCGTACGAAAT
123 AAAATGGTGGAAAGAAAA-GCTTTTCTTGTGAAAC
** * * * * *
3184238 CAAAATATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
1 CAAAGCATCAATAT-GTGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
* * *
3184303 TATGGATTAGCATGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT
64 TAGGGATTAGCATGA-TATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATAAAAAAT
*
3184368 GGTGGAAAGAAAAGCTTTTCTTGTGACAC
128 GGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * * *
3184397 CAAAGCATCAATGTGATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAG
1 CAAAGCATCAATATG-TGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
* * * * * * * *
3184462 T-GGAGATT-GTTACGAGAATCAGTGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAA
64 TAGG-GATTAG-CATGATATTCA-TGTTTGTCTTATTTAAGAGACGAACTTTGATTCT-A-TAAA
* * * * * *
3184525 AAATGG-CGAAAAAAAAG-ATTTCAATG-CAAAA
124 AAATGGTGGAAAGAAAAGCTTTTC-TTGTGAAAC
* * * * * *
3184556 GAAAACGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAATTG-A
1 CAAAGCATCAATAT-GTGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAAT--C---TTGAA
* ** * * *
3184620 AAGAAGA-TCATTA-C-TAGA-ATCCATGTTTGTCTCATTTGAG-GCACGAACTTAT-ACTT-TA
59 AAGAATAGGGATTAGCAT-GATATTCATGTTTGTCTTATTTAAGAG-ACGAACTT-TGA-TTCTA
* ** * * * * *
3184678 CAAAAGTTGATGGGAA-AAAAGCCTTTGTTGTAAAAC
120 TAAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * * *
3184714 CAAAGCACCAATATCGTGTATCCTCATGAGAAGACA-ATGTTTATGGTGCCTAATCCTGAAAAGA
1 CAAAGCATCAATAT-GTGTATCCTAATGAG-GGA-ATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * *
3184778 TTAGGGATTAGTATGCGTTTTCGTTTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAAAAA
63 ATAGGGATTAGCATG-ATATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTAT-AAAAA
* * * *
3184842 A-AGTGGAGAGAAAAGCTTTTCTTGCGACAC
126 ATGGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * * * *
3184872 CAAAGTATCAATGTTGTGTATCCTAATGGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAGGAA
1 CAAAGCATCAAT-ATGTGTATCCTAAT-GAGGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
* ** * * * * * *
3184937 T-GGAGACTATTATGAGAATCGATGCTTGTCTT-TTTAAGGGATGAACTTTAATT-T-TAAGGAA
64 TAGG-GATTAGCATGATATTC-ATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATAA--AA
* * * * * ** *
3184998 AATAGG-GCAAAGGAAAGATTTCCATGCAAAAG
125 AAT-GGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * * * * *
3185030 AAAATCATCAATATCATTTATCATAATGAGGAGAATGCGTTTATAGTGCCTAATC--GAAAAATG
1 CAAAGCATCAATAT-GTGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTAATCTTG-AAAA-G
* * ** * * * * * *
3185093 AAT-GAAGATCAATACTAGA-ATCCAAGTTTGGCTCA-TT-AGAGGTAGGAACTTAGACTT-T-T
62 AATAG-GGATTAGCA-T-GATATTCATGTTTGTCTTATTTAAGA-G-ACGAACTTTGA-TTCTAT
* * * ** *
3185152 CAAAAATTGGTGGGAA-TAGTGCCTTTCTTGTGAAAC
121 -AAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * ** * * *
3185188 GAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTCAAAAGAA
1 CAAAGCATCAATAT-GTGTATCCTAATGAGGGAA-TGTGTTTATGGTGCCTAATCTTGAAAAGAA
* * * *
3185253 T-GAGGATTAGTAAGAGTATTAATGTTTG-CTTTATTTAAGAGAC-AAGCTTTGATTATATAAAA
64 TAG-GGATTAGCATGA-TATTCATGTTTGTC-TTATTTAAGAGACGAA-CTTTGATTCTATAAAA
* * * *
3185315 AATAGTGGAAAAAAAAGCCTTTCTTGTGACAC
125 AATGGTGGAAAGAAAAGCTTTTCTTGTGAAAC
* * * * **
3185347 TAAAGCATCGATGTCATGTATCCTTTTGAAGGGAATGTGTTT
1 CAAAGCATCAATAT-GTGTATCCTAATG-AGGGAATGTGTTT
3185389 TAGGTTTGCA
Statistics
Matches: 1046, Mismatches: 321, Indels: 198
0.67 0.21 0.13
Matches are distributed among these distances:
153 2 0.00
154 6 0.01
155 6 0.01
156 17 0.02
157 162 0.15
158 451 0.43
159 332 0.32
160 45 0.04
161 14 0.01
162 3 0.00
163 5 0.00
164 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (156 bp):
CAAAGCATCAATATGTGTATCCTAATGAGGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATA
GGGATTAGCATGATATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATAAAAAATGGT
GGAAAGAAAAGCTTTTCTTGTGAAAC
Found at i:3184828 original size:949 final size:940
Alignment explanation
Indices: 3182892--3185408 Score: 2970
Period size: 949 Copynumber: 2.7 Consensus size: 940
3182882 TCCTAGTCTG
* * * *
3182892 GAAAAGAATAGGGATTAGTATGAGTATTAATGTTTG-CTTTATTTAAAAGACAAACTTTCATTAT
1 GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCT
* * * *
3182956 ATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCT-ACACCAAAGAATCGATGTCATGTATCTTAT
65 ATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTG-TGACACCAAAGAATCAATGTCATGTATCTTAA
* * * * *
3183020 TAAAGGGAATGTGTTTTAGGTTCCCAATCTTGGAAAGAATGGAGACAGTTACGAGAATCGATGTT
129 TGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* * * * * *
3183085 TTTTTTATTTAAGGTATGTACTTTGATTT-TAGGAAAATAGGGCAAAGAAAATATTTCTATGTAA
194 TGTCTTATTTAAGG-ATGAACTTTAATTTAT-GGAAAATAGGGCAAAGAAAAGATTTCCATGTAA
* * * * * * * *
3183149 AGGAAAATCGTCAAAATCATTATCCTAATGTGGAGAATGTGCTTATAGTGTCTACTCTCAAAATG
257 AAGAAAATCATCAATATCATTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCGC-AAATG
* * * * * *
3183214 AATGAAGATCATTACTAGAATCCATGTTTGTCCATTTAAGGCACAAACTTAGAC-TCT--ACA-T
321 AATGAAGATCATTACTAGAATCCAAGTTTGTTCATTTGAGGCACGAACTTAGACTTTTAAAAATT
** ** * *
3183275 -GT------ACCCTAAT-G-AG-AACAAAGCATCAATATTATGTATCCTAATGAGAACACTATG-
386 GGTGGGAAAATGCTTTTCGTAGAAACAAAGCATCAATATCATGTATCCTAATGAGAAAACTATGT
* * * *
3183329 TTATGGTGCCTAATCTCGCAAAGAATGGGGATTAGAATGAGTATTCATGTTTGCCTTATTTAAGT
451 TTATGGTGCCTAATCTTGAAAAGAAT-AGGATTAGAATGAGTATTCATGTTTG-CTTATTTAAGA
* * * * *
3183394 GGCAAACATTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTCCT-ACACCAAAGCATCA
514 GACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTT-GTGACACCAAAGCATCA
* * * * * * * *
3183458 AAGACTTGTATCCTAATAAAGGGAAAGTGTTTTTAGTTCCCAATCTTGCAAGGAATGAGGATAGT
578 ATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAGGATAGT
* *
3183523 CACGAGAATCAATGCTTGTCTTATTTAAACGACGAACTTTGATATTAAGGAAAATCAGACAAAGA
643 CACGAGAATCAATGCTTGTCTTATTTAAACGACGAACTTTGATATTAAGGAAAATAAGACAAAAA
* *
3183588 AATGATTTCCAAGCAAAAGAAAATCATCAACATCATTTATCTTAATGAAGGGAATGTTTTATAGT
708 AAAGATTTCCAAGCAAAAGAAAATCATCAACATCATTTATCCTAATGAAGGGAATGTTTTATAGT
* *
3183653 GCCTAATAACAAAATGAAAGAAGATCATTACTAGAATCCTTGTTTGTCTCAATTGAGGCATGAAC
773 GCCTAATAACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGCACGAAC
* *
3183718 TTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCCTACAAAATCAAAGCACCAATATCGTGT
838 TTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCCTACAAAACCAAAGCACCAATATCGTGT
* *
3183783 ATCCTTATGAGAAAACTATATCTATGGTGCTGAATCCT
903 ATCCTCATGAGAAAACAATATCTATGGTGCTGAATCCT
* * *
3183821 GAATAGAATAGGGAATAGTATGAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
1 GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * *
3183886 TCAAAAATGGTGAAAAGAAAAGCTTTTCTTGTGATACCAAAGCATCAATGTCATGTATCTTAATG
66 TCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCATGTATCTTAATG
* * * * * * *
3183951 AAGGAAATCTGTTTTAGGTTCCTAATCTTGAAAATAATGCAGACTGTTTTGAAAATCGATGCTTG
131 AAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* *
3184016 TCTTATTTTAGTGATGAACTTTAATTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGTAAAAG
196 TCTTATTTAAG-GATGAACTTTAATTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAG
* * * *
3184081 AAAATCAACAATATCACTGATCCTAATGAGGAGAATGTGATTGTAGTGCCTAAGTAGCAAATGAA
260 AAAATCATCAATATCA-TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAA-TCGCAAATGAA
* * * *
3184146 TGAAGATCATTATTAGAATCTAAGTTTGTTTTATTTGAGGCATGAACTTAGACTTTATAAAAATT
323 TGAAGATCATTACTAGAATCCAAGTTTG-TTCATTTGAGGCACGAACTTAGACTTT-TAAAAATT
** ** * *
3184211 GGTGGGAAAATGCTTTTCGTACGAAATCAAAATATCAATATCGCGTATCCTAAAGAGAAGACTAT
386 GGTGGGAAAATGCTTTTCGTA-GAAA-CAAAGCATCAATATCATGTATCCTAATGAGAAAACTAT
* * *
3184276 GTTTATGGTGCCTAATCTTGAAAAGAATATGGATTAGCATGACTATTCATTTTTGTCTTATTTAA
449 GTTTATGGTGCCTAATCTTGAAAAGAATA-GGATTAGAATGAGTATTCATGTTTG-CTTATTTAA
3184341 GAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
512 GAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
* * *
3184406 AATGTGATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTG-GAGATT
577 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAG-GATA
* * * * *
3184470 GTTACGAGAATCAGTGCTTGTCTTATTTAAGA-GATGAACTTTGATTTTAAGGAAAA-AATGGCG
641 GTCACGAGAATCAATGCTTGTCTTATTTAA-ACGACGAACTTTGATATTAAGGAAAATAA-GAC-
* *
3184533 AAAAAAAAGATTT-CAATGCAAAAGAAAA-CGTCAATATCATTTATCCTAATG-AGGAGAATGTG
703 AAAAAAAAGATTTCCAA-GCAAAAGAAAATCATCAACATCATTTATCCTAATGAAGG-GAATGT-
* * *
3184595 TTTATAGTGCCTAATCACAAATTGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
765 TTTATAGTGCCTAATAACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAG
* * ** **
3184660 GCACGAACTTATACTTTACAAAAGTTGATGGGAAAAAAGCCTTTGTTGTAAAACCAAAGCACCAA
830 GCACGAACTTAGACTTTACAAAAATTGATGGGAAAAAAGCCTTTCCTACAAAACCAAAGCACCAA
* * *
3184725 TATCGTGTATCCTCATGAGAAGACAATGTTTATGGTGCCT-AATCCT
895 TATCGTGTATCCTCATGAGAAAACAATATCTATGGTG-CTGAATCCT
* * * * *
3184771 GAAAAGATTAGGGATTAGTATGCGTTTTCGTTTTTGTCTTATTTAAGAGAC-AACTTTGATTCTA
1 GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * ** *
3184835 TCAAAAAAAGTGGAGAGAAAAGCTTTTCTTGCGACACCAAAGTATCAATGTTGTGTATCCTAATG
66 TCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCATGTATCTTAATG
* * * *
3184900 GAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTATTATGAGAATCGATGCTTG
131 AAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* * *
3184965 TCTT-TTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAA
196 TCTTATTTAA-GGATGAACTTTAA-TTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAA
* * * *
3185029 GAAAATCATCAATATCATTTATCATAATGAGGAGAATGCGTTTATAGTGCCTAATCGAAAAATGA
259 GAAAATCATCAATATCA-TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCG-CAAATGA
* * * * *
3185094 ATGAAGATCAATACTAGAATCCAAGTTTGGCTCATTAGAGGTAGGAACTTAGACTTTTCAAAAAT
322 ATGAAGATCATTACTAGAATCCAAGTTT-GTTCATTTGAGGCACGAACTTAGACTTTT-AAAAAT
* * *
3185159 TGGTGGGAATAGTGCCTTTCTTGT-GAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAC
385 TGGTGGGAA-AATG-CTTT-TCGTAGAAAC-AAAGCATCAATATCATGTATCCTAATGAGAAAAC
* * *
3185223 TATGTTTATGGTGCCTAATCCTCAAAAGAATGAGGATTAGTAA-GAGTATTAATGTTTGCTTTAT
446 TATGTTTATGGTGCCTAATCTTGAAAAGAAT-AGGATTAG-AATGAGTATTCATGTTTGC-TTAT
* * * * * *
3185287 TTAAGAGACAAGCTTTGATTATATAAAAAATAGTGGAAAAAAAAGCCTTTCTTGTGACACTAAAG
508 TTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAG
* ** * ** *
3185352 CATCGATGTCATGTATCCTTTTGAAGGGAATGTGTTTTAGGTTTGCAATCTTTAAAA
573 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
3185409 ATATGGAGAC
Statistics
Matches: 1341, Mismatches: 200, Indels: 73
0.83 0.12 0.05
Matches are distributed among these distances:
928 1 0.00
929 230 0.17
930 65 0.05
931 21 0.02
932 1 0.00
933 1 0.00
935 2 0.00
936 1 0.00
937 2 0.00
943 4 0.00
944 1 0.00
945 1 0.00
946 1 0.00
947 2 0.00
948 57 0.04
949 524 0.39
950 416 0.31
951 8 0.01
952 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (940 bp):
GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
TCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGAATCAATGTCATGTATCTTAATG
AAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
TCTTATTTAAGGATGAACTTTAATTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGA
AAATCATCAATATCATTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCGCAAATGAATGA
AGATCATTACTAGAATCCAAGTTTGTTCATTTGAGGCACGAACTTAGACTTTTAAAAATTGGTGG
GAAAATGCTTTTCGTAGAAACAAAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATG
GTGCCTAATCTTGAAAAGAATAGGATTAGAATGAGTATTCATGTTTGCTTATTTAAGAGACAAAC
TTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
TATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAGGATAGTCACGAGAA
TCAATGCTTGTCTTATTTAAACGACGAACTTTGATATTAAGGAAAATAAGACAAAAAAAAGATTT
CCAAGCAAAAGAAAATCATCAACATCATTTATCCTAATGAAGGGAATGTTTTATAGTGCCTAATA
ACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGCACGAACTTAGACTT
TACAAAAATTGATGGGAAAAAAGCCTTTCCTACAAAACCAAAGCACCAATATCGTGTATCCTCAT
GAGAAAACAATATCTATGGTGCTGAATCCT
Found at i:3185759 original size:13 final size:13
Alignment explanation
Indices: 3185741--3185765 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3185731 CATTATTCTT
3185741 TGTATCGATACAA
1 TGTATCGATACAA
3185754 TGTATCGATACA
1 TGTATCGATACA
3185766 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3185783 original size:32 final size:33
Alignment explanation
Indices: 3185720--3185784 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
3185710 GCACTTTCAG
* *
3185720 ATGTATCGATACATTATTCTTTGTATCGATACA
1 ATGTATCGATACATTATTCATTGTATAGATACA
*
3185753 ATGTATCGATACA-TGTTCATTGTATAGATACA
1 ATGTATCGATACATTATTCATTGTATAGATACA
3185785 TGAACAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (33 bp):
ATGTATCGATACATTATTCATTGTATAGATACA
Found at i:3185879 original size:20 final size:21
Alignment explanation
Indices: 3185835--3185884 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
3185825 CTACCACTAT
*
3185835 TTGTATCGATACATGGCACAA
1 TTGTATCGATACATGGAACAA
*
3185856 -TGTATCGATACAT-GAAGAA
1 TTGTATCGATACATGGAACAA
3185875 TTGTATCGAT
1 TTGTATCGAT
3185885 GCACTGCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (21 bp):
TTGTATCGATACATGGAACAA
Found at i:3189081 original size:24 final size:24
Alignment explanation
Indices: 3189049--3189095 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
3189039 ATTACCTAAG
3189049 GTTAAATTTGATTACGATAAAGTT
1 GTTAAATTTGATTACGATAAAGTT
*
3189073 GTTAAATTTGATTGCGATAAAGT
1 GTTAAATTTGATTACGATAAAGT
3189096 CTGTGATGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.40
Consensus pattern (24 bp):
GTTAAATTTGATTACGATAAAGTT
Found at i:3193582 original size:33 final size:33
Alignment explanation
Indices: 3193537--3193600 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
3193527 GAGTTGATCG
* *
3193537 CTTCACTTTTGCAGCACATGAATGAGCACTTCA
1 CTTCACTCTTGCAACACATGAATGAGCACTTCA
* *
3193570 CTTCACTCTTGCAACGCATGGATGAGCACTT
1 CTTCACTCTTGCAACACATGAATGAGCACTT
3193601 TAATTCTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (33 bp):
CTTCACTCTTGCAACACATGAATGAGCACTTCA
Found at i:3194668 original size:20 final size:21
Alignment explanation
Indices: 3194622--3194675 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
3194612 CTACCACTAT
*
3194622 TTGTATCGATACATGGTACAA
1 TTGTATCGATACATGGAACAA
* *
3194643 -TATATCGATACAT-GAAGAA
1 TTGTATCGATACATGGAACAA
3194662 TTGTATCGATACAT
1 TTGTATCGATACAT
3194676 TACCTCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (21 bp):
TTGTATCGATACATGGAACAA
Found at i:3196597 original size:475 final size:474
Alignment explanation
Indices: 3195418--3203974 Score: 8946
Period size: 475 Copynumber: 18.2 Consensus size: 474
3195408 AAAGTCTGTG
* * * * *
3195418 CTTTGATTTTAGGAAAATAGGGCAAAGGAAAGA-TTCTCGTGCAAAGGAAAATCATCAATATCA-
1 CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTC-CATGCAAAAGAAAATCATCAATATCAC
* * * *
3195481 TTATCCTAATGTGAAGAATGTGCTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGA
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * *
3195546 ATTCATGTTTGTCTCATTTGAGGCACGAACTTAGATTTTGCGAAAATTGGTGGGTAAAAA-ACCT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAATGCCT
* * * *
3195610 TTCTTGCGAAACCAAAGCATCAACTA-----TATCCT-ATAGAGAACATTATGTTTATGATGCCT
194 TTCTTGCAAAACCAAAGCATCAA-TATCGCGTATCCTAAT-GAGAAGACTATGTTTATGGTGCCT
* * * * * * *
3195669 AATCTTGAAAAGCATGGGGATTAGAATGAGTATTCATGTTTGCCTTATTGAAGAGGCAAACGTTG
257 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * *
3195734 ATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTCCTACACCAAAGCATCAAAGACTTATATC
322 ATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
3195799 CTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGCAAAGAATGGGGACTGTTACGAGAATCGA
387 CTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGA
* *
3195864 TGTTTGTCTTATTTAAACGG-TGAA
452 TG-CTGTCTTATTT-AAGGGATGAA
* * * * * *
3195888 CTTTGATTTTAAGGAAAA-ATCGACAAAGAAAAGATTTTCATGCAAAAGAAAATTATCAACATCA
1 CTTT-AATTTAAGGAAAATA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * * * *
3195952 TTTATCCTAATGAAGG-GAATGTGTTTATAATGCCTAATAACAAAATGAAAGAAGATCATTGCTA
64 CTTATCCTAATG-AGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
** * * ** *
3196016 GAATCTTTGTTCGTCTCATTTGAGGTATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * * * ** *
3196081 TTTCCTGCAAAATCGAAGCACCAATATCATGTATCCTAATGAGAAAACTATAG-TTATGGTGCCT
193 TTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTAT-GTTTATGGTGCCT
* * * *
3196145 AATCTTGAAAAAAATGGGGAATAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
257 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
3196210 ATTCTATAAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGATACTAAAGCATCAATGTCATGTATC
322 ATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * *
3196275 TTAAT-AATGGAAATGTGTTTTAGGTTCCTAATCATGAAAATAATGGAGACTGTTTCGAAAATCA
387 CTAATGAA-GGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCG
3196339 ATGCTGATCTTATTTAAGGGATGAA
451 ATGCTG-TCTTATTTAAGGGATGAA
* *
3196364 CTTTAATTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAAT-AATATCAC
1 CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCAC
* * * *
3196428 TTATCCTAGTGAGGAGAAAGTGATTGTAGTGCCTAATCAGC-AAATGAATAAAGATCATTACTAG
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAG
* * * * *
3196492 AATCTAAGTTTGTCTCATTCGAGGCATGAA-TATAGACTTTATAAAAATTGGTGGGAAAAATGCC
129 AATCCATGTTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * * ** * * *
3196556 TTTCATACGAAACCAAAATATCAAAATTGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTA
193 TTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * *
3196621 ATCATGAAAAGAATGAGAATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
258 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
3196686 TTCTATAAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCGTGTA-CC
323 TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * * *
3196750 TTAATGAAGGGAATGTGTTTTTGGTCCCCAATCTTGAAAAGAGTGGAGATTGTTACAAGAAT-TA
388 -TAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGA
* *
3196814 GTGCTTATCTTATTTCAGGGATGAA
452 -TGC-TGTCTTATTTAAGGGATGAA
* * * * * * *
3196839 CTTTGATTTTAAGGAAAATATGGCAAAAAAAAAGATTTCCATGTAAAGGAAAATCGTCAAAATCA
1 CTTT-AATTTAAGGAAAATAGGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * * * *
3196904 TTTATCCTAATGAGGAGAATGTGTTTATAGGGCCT-ATCACAAATTGAAAGACGATCATTACTAG
64 CTTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* ** *
3196968 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAGTT--T----AGTATGCGT
129 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * * * *
3197027 TTCTTGAAAAACCAAAGCACCATTATTGTGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAA
194 TTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * * * * *
3197092 TCCTGTAAAGATTAGGGATTAGTATGCA-TTTTCATGTTTGTTTTATTTAAGAGACACATTTTGA
259 TCCTGAAAAGAATGGGGATTAGTATG-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* **
3197156 TTCTATCAAAAAA-GGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTTGTGTATC
323 TTCTAT-AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * *
3197220 CTAATGGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAGAGAATGAAGACTATTATGAGAATCGA
387 CTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGA
3197285 TGCTTGTCTT-TTTAAGGGATGAA
452 TGC-TGTCTTATTTAAGGGATGAA
** * * *
3197308 CTTTAATTTTAAGGAAAATAGGGTGAAGTAAAGATTTCCATGCGAAAGAAAATCATCAATATCAT
1 CTTTAA-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
* * * * * *
3197373 TTACCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCAATACTAAA
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * ** * ** * * ***
3197438 ACCCAAGTTTGGATCATTTAAGGCGGGAACTTAGACTTTACGAAAATTGGTGAGAATGGTGCCTT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * *** * *
3197503 TCTTGCATAACCAAAGCTTCAATATCATATATCCTTATGAGAAGACTATGTTTATGGTGTCTAAT
195 TCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * *
3197568 CCTCAAAAGAATGGGGATTAGTGTGAGTATTAATGTTTG-CTTTATTTAAGAGACAAACTTTGAT
260 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGAT
* * * * * *
3197632 TATATAAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCGATATCATGCATCCT
324 TCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * *
3197697 ATTAAAGGGATTGTGTTTTAGGTTCCCAATCTTTG-AAA-AATGGAGACTGTTACGAGAATCGAT
389 AATGAAGGGAATGTGTTTTAGGTTCCCAATC-TTGAAAATAATGGAGACTGTTACGAGAATCGAT
* * ** **
3197760 GCTTTTCTTATTTAAAGTCTGTG
453 GC-TGTCTTATTTAAGGGATGAA
* * * * * * * * * *
3197783 CTTTGATTTTAGGGAAATAGGGTAAAGGAAAGATTTTCGTGTAAAGGAAAATCGTCAATATCA-T
1 CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCACT
* * * * * * * *
3197847 TATCCTAATGTGGAAAATATGCTTATAGTGCCTAATCTCAGAATGAATGAAAATCGTTACTAGAA
66 TATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * *
3197912 TCCATGTTTATCTCATTTGAGTCACGAACTTAGAATTTACAAAAATTGGTGGGTAAAAA-ACCTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAATGCCTT
* ** * * *
3197976 TCTTACAAAACCAAAGCATCAATATCATGAATCCTAATGAGAATACTATGTTTACGGTGCCTAAT
195 TCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
** * * *
3198041 GTTGAAAAGAATGGGGATTAGTATGAGTATTCA--TTTGCCTTATTTAAGAGGCAAACATTGATT
260 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * ** * * * * * *
3198104 CTATCAAAAATAGTGGAATCAAAAGCTTTTCTTCCTACTCCAAAGCATCAAAGACTTGTATCCTA
325 CTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* ** * *
3198169 ATGAAGGGAATATGTTTTTA-GTTCTTAATCTTGCAAAGAATAGG-GACTGTTACGAGAATCGAT
390 ATGAAGGGAATGTG-TTTTAGGTTCCCAATCTTGAAAATAAT-GGAGACTGTTACGAGAATCGAT
* * ** *
3198232 GTTTTCTTATTTAAACGACGAA
453 GCTGTCTTATTTAAGGGATGAA
* * * * ** * *
3198254 CTTCGATTTTAAGGAAAATTGGGCAAAGAAAAGATTTTCATTTAAAAGAAAATCATCAACATCAT
1 CTT-TAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
* * * * * ** *
3198319 TTATCCTAATGAAGG-GAATGTGTTTATAATACCCAATAACAAAATGAAAAAAGATTATTACTAG
65 TTATCCTAATG-AGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * *
3198383 AATCCTTGTTTGTCCCATTTGAGGCATGAACTTAGATTTTACAAAAATTGATGGGAAAAAAGCCT
129 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * * * * * * * *
3198448 TTCTTGTAAAATCAAAGTACCAATATCGTGTATCCTAATGAGAAAACTATTTTTTTGGTTCTTAA
194 TTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* *
3198513 TCCCGAAAAGAATGGGGGA-TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
259 TCCTGAAAAGAAT-GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * *
3198577 TTTTATTAAAAACGGTGAAAAGAAAAGCTTTTCTTGC-ATTACCAAAGCATCAATGTCATGTATC
323 TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATC
* * * *
3198641 TTAATGAAGGGAATGTGTTTCAGGTTCCCAATCTTAAAAATAATGGAGACTGTTTA-GAGAATTG
387 CTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTG-TTACGAGAATCG
* *
3198705 ATGCTTGTCTTGTTTAAGGGATTAA
451 ATGC-TGTCTTATTTAAGGGATGAA
3198730 CTTTAATTTTAAGGAAAATAGGGCAAAG--AA-A-----AT-C--------A--A-CAATATCAC
1 CTTTAA-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
* * *
3198775 TTATCCTAATGAGAAGAATGTGATTGTAGTGCCTAATCAGC-AAATGAGTGAAGATCATTACTAG
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAG
* * * * *
3198839 AATCCAAGTTTGTCTCATTCGAGGCATGAACTTAGACTTTATAAAAATTGGTGGGAAAAATGCAT
129 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * ** ** *
3198904 TTCATACGAAATGAAAATATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAA
194 TTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
** *
3198969 TCCTGAAAAGAAT-TAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
259 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * **
3199033 TCTATAATAAACGGTGGAAAGAACAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCT
324 TCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * *
3199098 AATGAAGGGAATGTGTTTTTGGTTCCTAATCTT----AT--T-TA-A--G----G-G-AT-GA-A
389 AATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATG
* *
3199145 CT-TC-AATTTTAAGGGATAAA
454 CTGTCTTA-TTTAAGGGATGAA
* * * * *
3199165 CATTGATTTAAAGAAAATAGGGCAAAGTAAAGATTTCCATGCAAAAGAAAATCAAT-AATATCAT
1 CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCAC
* * * * *
3199229 TTATCCTATTGAGGAGAATGCG-TTAATAGTGCCTAAT-AAAAAAAGAATGAAGATCAATACTAG
65 TTATCCTAATGAGGAGAATGTGATT-ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * *
3199292 AATCCATGCTTGGCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGTGGGAAAAAAG-CT
129 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * *
3199356 TTCTTGCAAAACCGAAGTC-CCAATATCGTGTATACTAAT-ACGAAGACTATGTTTATGGTGCCT
194 TTCTTGCAAAACCAAAG-CATCAATATCGCGTATCCTAATGA-GAAGACTATGTTTATGGTGCCT
* * *
3199419 AATCCTGAAAAGAGTAGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGAG-CAAACTTTG
257 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
3199483 ATTCTATAAAAAACT-GTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCACCAATGTCATATAT
322 ATTCTATAAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * * *
3199547 CCTAATGGAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATAGAGATTGTTATGAGAATCG
386 CCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCG
*
3199612 ATGCTTCTCTTATTTAAGGGATGAA
451 ATGC-TGTCTTATTTAAGGGATGAA
* * * * * * * * * *
3199637 CCTTGATTTAAGGAAAACAGGGCAAAGTAAAGATTTCCATACAAAAAAAAATCAACATTGTCATT
1 CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCACT
* * * * *
3199702 TATCCTAATGAGGAAAATGCGTTTATAGCGCCTAATC-CAAAAATGAATGAAGATCAATACTAGA
66 TATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGA
* * * * **
3199766 ATCCATGTTTGACTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCGAGG-AATA-GGGT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAAAAATGCCT
* * * * * *
3199829 TTCTTGCGAAACCAAAGCATCAATATTGTGTATCGTAATGAGAAGACTATGCTTATGGCGCCTAA
194 TTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * * *
3199894 TCTTGAAAAGAATGGGGAATAGTATGAGTATTCGTGTTTGTCTTATTTGAGAGAGAAACTTTGAT
259 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * *
3199959 TCTGTCAAAAGTGGTGAAAAGAAAAGCATTTT-TT-CGACACCAAAGCCTCAATGTCATGTATCC
324 TCTATAAAAAATGGTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
3200022 TATTGAAGGGAATGTGTTTTAGGTTCCCAATGTTGAAAATAATAGTGACTGTTACGAGAATTGAT
388 TAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGAT
* * *
3200087 GCTTGTCTTACTTAAGGTATGTA
453 GC-TGTCTTATTTAAGGGATGAA
* * * ** ***
3200110 CTTTGATTTTAGGAAAATAGGGCAAAGAAAACATTTTTATGCATTGGAAAATCATCAATATCA-T
1 CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCACT
* * * * *
3200174 TGTCCTAATGAGGATAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTAATAGAA
66 TATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * *
3200239 TCCATGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGAGAGAAAA-GCCTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAATGCCTT
* * * *
3200303 CCTTGCAAAACCAAAACACCAATATCGCGTATCCTAATGAGAAGACTATGATTATGGTGCCTAAT
195 TCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
** * * *
3200368 CCTGAAAAGAATGGGGACGAGTATGAGTATTCATGTTTATCTTTTTTAAGAGACAAGCTTTGATT
260 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * * *
3200433 TTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGGCATCAAAGCATCAATGTC-TAGTACCCT
325 CTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT-GTATCCT
* * *
3200497 AATGAAAGGAA-GTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTACGAGAATCGATG
389 AATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATG
3200561 CTTGTCTTATTTAAGGGATGAA
454 C-TGTCTTATTTAAGGGATGAA
* * * * * *
3200583 CTTTGACTTTAATGAAAATAGGACAAAGAAAAGATTTCTATGCAAAAGACAATCATCAATATCCC
1 CTTT-AATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
* * * *
3200648 TTATCCTAATGAGGAGAATGTGATTTTAGTGCCTAATCACAAAATGAGTAAAGATCATTACTGGA
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * * * *
3200713 ATCCATGCTTGTCGCATTCGAGGCACAAATTTAGACTTTACAAAAATTGGAGGAAAAAATGCCTT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
** * * * * * * *
3200778 T-TGTGTGAAACCAAAACATCAATAGCGTGTATCCCAATCAAAAGACTATGTTTATGGTGCCAAA
195 TCT-TGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* **
3200842 TCCT-ATAAAGAATGGGGATTAGTATG-GCTATTCATGTATACCTTATTTAAGAGACAAACTTTG
259 TCCTGA-AAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
3200905 ATTCTATCAAAAACGGTAGAAAG-AAAGCTTTTCTTACGATACCAAAGCATCAATGTC-TAGTAT
322 ATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT-GTAT
* * * * *
3200968 CCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTATCACCAGAATCG
386 CCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCG
* *
3201033 ATACTTGTCTTATTTAAGGGATAAA
451 ATGC-TGTCTTATTTAAGGGATGAA
* ** *
3201058 CTTTGATTTTAACAAAAACAAGGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1 CTTT-AATTTAAGGAAAA-TA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
3201123 ACTTGTCCTAATGAGAAGAATGTGATTATAGTGCCTAATGACAAAATGAATGAAGATCATTACTA
63 ACTTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * **
3201188 GAATCCATATTTGTCTCATTCGAGGCACGAACTTAGACAGTACAAAAATTGGTGGGAAAAATGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* *
3201253 TTTCATGCAAAACCAAA--A-C-ATATCGCGTATCCTAATGAGAATACTATGTTTATGGTGCCTA
193 TTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
** * *
3201314 ATTTTGAAAAAGAATGGGGATTAGTATG-GCTATTCATGTTTGCCTTATTTAAGAGGCAAACTTT
258 ATCCTG-AAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
3201378 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACAACAAAGCATCAATGTCATGTAT
321 GATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * *
3201443 CCTAGTGAAAGGAATGTGTTTTGGGTTCCCAATCCTGAAAATAATGGAGACTGTTATGAGAATCA
386 CCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCG
*
3201508 ATGCTTGTCTGATTTAAGGGATGAA
451 ATGC-TGTCTTATTTAAGGGATGAA
* * * * *
3201533 CTTTAATTTTAAAGAAAATAGGGCAAAGGAAAGTTTTCCATGCAAAAGAAATTCAACAATATCAC
1 CTTTAA-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
* * * * *
3201598 TTATCCTAATGTGGAGAACGTGATTATAGTGCCTATTCTCAAAATGAATAAAGATCATTACTAGA
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
** * * * *
3201663 ATCCATGTTTGTCTCATTCAAGGCGCAAACTTAGACTTTACAAAAATTGCTAGGAAAAATGCCTT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* ** * * **
3201728 TCGTT-CAAAACCAAAACATCAATATTACATATCCTAA-GAAGAAGACTATGTTTTTGGCACCTA
195 TC-TTGCAAAACCAAAGCATCAATATCGCGTATCCTAATG-AGAAGACTATGTTTATGGTGCCTA
* * * *
3201791 ATCCCGAAAAGAACGGCGATTAGTATG-GCTATTCAAT-TTTGCCTTATTTAAGAGACAAACTTT
258 ATCCTGAAAAGAATGGGGATTAGTATGAG-TATTC-ATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * * *
3201854 AATTCTATCAAAAATGGTGGTAAA-AAATGCTTTTCTTGTGACCCCAAAGCATCAATGTCAAGTA
321 GATTCTATAAAAAATGGTGG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * *
3201918 TCCTAATG-A-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAAAATC
385 TCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATC
* *
3201981 GGTGCTTGTCTTATTTAAGGGAAGAA
450 GATGC-TGTCTTATTTAAGGGATGAA
* * * * * *
3202007 GTTTGATTTTAAGGAAAATTGAGTAAAGAAAAGATTT---T-CAAAAGGAAATCATCAATATCAC
1 CTTT-AATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
*
3202068 TTACCCTAATGAGGAGAATGTG---ATAGTGCCTAATCACAAAATGAATGAAGATCATTA-TGAG
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AG
* * *
3202129 AATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTATACAAAAATTGGTAGGAAAAATGCCT
129 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
** * *
3202194 TTAATGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAATACTATGTTTATGGTGCCTAA
194 TTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* *
3202259 TCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTTTGCCTTCTTTAAGAGACAAACTTTGA
259 TCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
3202323 TTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGAAACCAAAGCATCAATGTC-TAGTATC
323 TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT-GTATC
* * * *
3202387 CTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTGTTACCAGAATCAA
387 CTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGA
3202452 TGCTTGTCTTATTTAAGGGATGAA
452 TGC-TGTCTTATTTAAGGGATGAA
* ** *
3202476 CTTTGATTTTAACAAAAACAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
1 CTTT-AATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAC
* *
3202541 TTATCCTAATGAGAAGAATGTGATTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
65 TTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * **
3202606 ATTCATATTTGTCTCATTCGAGGCATAAACTTAGA-TTGTACAAAAATTGG-GGGAAAAATGCCT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT-TACAAAAATTGGTGGGAAAAATGCCT
* * * ** * * * **
3202669 TTCGTGCAAAACCAAAACATTAATATTACATATCCTAAGGAGAAGACTATGTTTTTGGCACCTAA
194 TTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* ** * * *
3202734 TCCCGAAAAGAACCGGGATTAGTATG-GCTATTCAAT-TTTGCCTTATTTAAGAGATAAACTTTA
259 TCCTGAAAAGAATGGGGATTAGTATGAG-TATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * ** *
3202797 ATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCTTTCAACACCAAATAATCAATGTCATGCATC
322 ATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
3202861 CTAATGAAAGGG-ATGTGTTTTAGGTTCCCAATCCTGAAAATAATAGAAACTGTTATGAGAATTG
387 CTAATG-AAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCG
*
3202925 ATGTTTGTCTTATTTAAGGGATGAA
451 ATG-CTGTCTTATTTAAGGGATGAA
* * * *
3202950 CTTTGATTTTAAGGAAAATAGGACAAAGAAAAGTTTTCCACGCAAAAGAAAATC-TACAATATCA
1 CTTT-AATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT-CAATATCA
* * *
3203014 CTTATCCTAAT-ATGGAGAATGTGATTATAGTGTCTAATCACAAAATAAATGAAGTTCATTACTA
64 CTTATCCTAATGA-GGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * ***
3203078 GAATCCATGTTTGTCTCATTCGAGGCACGAACTTAAACTTCACAAAAATTGGTGTTTAAAATGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * * **
3203143 TTTCGTGCAAAACCAAAGCATCAATATCGCTTATCCTAATGAGAAGACTATGTTTTTGGCACCTA
193 TTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
3203208 AT-CTGGAAAAGAATGGGGATTTGTATG-GCTATTCAAGTTTGTCTTATTTAAGAGATAAACTTT
258 ATCCT-GAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
3203271 GATTCTATAAAAAACGGTGGAAAAAAAAGC-TTTC-TGAGACA-TAATAGCATCAATGTCAAGTA
321 GATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA-AGCATCAATGTCATGTA
* ** * * *
3203333 TCCTAATGAAGGGAATGTGTTTTAAGTTCCCAATCTTCCAAAGAATGGGGACTATTACGAGAATC
385 TCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATC
* *
3203398 GATGCCTTTCCTATTTAAAGGG-TGAA
450 GATG-CTGTCTTATTT-AAGGGATGAA
* * * * *
3203424 CTTTGATTTTAAGGAGAATCA-GGCAAAGAAAAGATTTTCTTGCAAAAGAAAATCATCAACATCA
1 CTTT-AATTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * * * *
3203488 TTTATCCTAATGAAGG-GACTGTGTTTATAGTGCTTAATAACAAAATGAAAGAAGATCATTACTA
64 CTTATCCTAATG-AGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * *
3203552 GAATCCTTGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGAC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * * * * * * *
3203617 TTCCTTGCAAAATCAAAGCACCAATATCGTGTATCCTAATGGGAGGACTATATTTATGATGCCTA
193 TTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * *
3203682 ATCTTGAAAAGAATGGGGAATAGTATGAGTATTCATATTTGTCTTATTTAAGATACAAACTTTGA
258 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
3203747 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT-AATTGTCTTGTATC
323 TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA-TGTCATGTATC
* * * * * *
3203811 CTAATTAAGGAAATGTGTTTTAGGGTCCTAATCTTGAAAATAATGGAGACTATTACGAGAGTCGA
387 CTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGA
* * * *
3203876 TGGTTTTCTTATTTAAGGTATGTA
452 T-GCTGTCTTATTTAAGGGATGAA
* * * * *** ** *
3203900 CTTTGATTTTAGGAAAATAGGGTAAAGAAAAAATTTGTGTGCAATGGAAAATCGTCAATATCA-T
1 CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCACT
3203964 TATCCTAATGA
66 TATCCTAATGA
3203975 TTGGTGTCGC
Statistics
Matches: 6777, Mismatches: 1105, Indels: 407
0.82 0.13 0.05
Matches are distributed among these distances:
434 20 0.00
435 18 0.00
436 3 0.00
437 2 0.00
438 2 0.00
439 2 0.00
440 1 0.00
441 1 0.00
442 2 0.00
443 1 0.00
445 1 0.00
447 1 0.00
448 1 0.00
449 1 0.00
451 4 0.00
452 162 0.02
453 112 0.02
454 40 0.01
455 130 0.02
456 177 0.03
457 2 0.00
458 1 0.00
459 2 0.00
460 1 0.00
462 1 0.00
466 8 0.00
467 258 0.04
468 71 0.01
469 197 0.03
470 270 0.04
471 178 0.03
472 415 0.06
473 1154 0.17
474 1103 0.16
475 1527 0.23
476 631 0.09
477 277 0.04
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
CTTTAATTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCACT
TATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT
CTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
TATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
TGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCT
GTCTTATTTAAGGGATGAA
Found at i:3202406 original size:159 final size:159
Alignment explanation
Indices: 3199405--3203859 Score: 965
Period size: 158 Copynumber: 28.2 Consensus size: 159
3199395 ACGAAGACTA
* *
3199405 TGTTTATGGTGCCTAATCCTGAAAAGAGTAGG-GATTAGTAT-GAATATTCATGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGTATGGCA-ATTCATGTTTGTCTTATT
* *
3199468 TAAGAG-CAAACTTTGATTCTATAAAAAACT-GTGGAAAGAAAAGCTTTTCTTGCAACACCAAAG
64 TAAGAGACAAACTTTGATTCTATAAAAAA-TGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAAG
* * ** * *
3199531 CACCAATGTCATATATCCTAATGGAGGGAATG
128 CATCAATATCACGTATCCTAATGAAAGGAATG
* * * * * *
3199563 TGTTTTTGGTTCCTAATCTTGAAAAGAATAGAGATT-GTTATGAG-AA-TCGATGCTTCTCTTAT
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATG-GCAATTC-ATGTTTGTCTTAT
* ** * * * * * **
3199625 TTAAGGGATGAACCTTGATT-TA-AGGAAAACA-GG-GCAAAGTAAAG-ATTTCCATACAAAAAA
63 TTAAGAGACAAACTTTGATTCTATA--AAAA-ATGGTGGAAAGAAAAGCTTTTCC-TGCAAAACC
* * * * **
3199685 AAATCAACATTGTCATTTATCCTAATG--AGGAAAATG
124 AAAGCATCAATATCACGTATCCTAATGAAAGG--AATG
* * * * * * * * * * *
3199721 CGTTTATAGCGCCTAATCC-AAAAATGAATGAAGATCAATACTAG-AATCCATGTTTGACTCATT
1 TGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTA-TGGCAATTCATGTTTGTCTTATT
* * * * * * * ** * *
3199784 T--GAGGCATGAACTTAGACTT-TACAAAAATTGG-CG-AGGAATAGGGTTTCTTGCGAAACCAA
64 TAAGAGACA--AACTTTGA-TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAA
*** * * *
3199844 AGCATCAATATTGTGTATCGTAATGAGAA-GACTA
126 AGCATCAATATCACGTATCCTAATGA-AAGGAATG
* * * * * * *
3199878 TGCTTATGGCGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG-TATTCGTGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-GCAATTCATGTTTGTCTTATTT
* * * * * * * * *
3199942 GAGAGAGAAACTTTGATTCTGTCAAAAGTGGTGAAAAGAAAAGCATTTT--TTCGACACCAAAGC
65 AAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGC-TTTTCCTGCAAAACCAAAGC
* * * * *
3200005 CTCAATGTCATGTATCCTATTGAAGGGAATG
129 ATCAATATCACGTATCCTAATGAAAGGAATG
* * ** * * * * * * * *
3200036 TGTTT-TAGGTTCCCAATGTTGAAAATAATAGTGACT-GTTACGAG-AATTGATGCTTGTCTTAC
1 TGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATG-GCAATTCATGTTTGTCTTAT
*** * * ** *****
3200098 TTAAG-GTATGTACTTTGATT-T-TAGGAAAATAGG-GCAAAGAAAA-CATTTTTATGCATTGGA
63 TTAAGAG-ACAAACTTTGATTCTATA-AAAAAT-GGTGGAAAGAAAAGC-TTTTCCTGCAAAACC
* * *
3200158 AAATCATCAATATCA-TTGTCCTAATG--AGGATAATG
124 AAAGCATCAATATCACGTATCCTAATGAAAGG--AATG
* * * * * * * *
3200193 TGTTTATAGTGCCTAAT-CTCAAAATGAATGAAGATCATTAATAG-AATCCATGTTTGTCTCATT
1 TGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGT-ATGGCAATTCATGTTTGTCTTATT
* ** * * * * *
3200256 TGAG-GTATGAACTTAGACTT-TACAAAAATTGGT-GAGAGAAAAGC-CTTCCTTGCAAAACCAA
64 TAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCC-TGCAAAACCAA
* * * * *
3200317 AACACCAATATCGCGTATCCTAATGAGAA-GACTA
126 AGCATCAATATCACGTATCCTAATGA-AAGGAATG
* * ** * * *
3200351 TGATTATGGTGCCTAATCCTGAAAAGAATGGGGACGAGTATGAG-TATTCATGTTTATCTTTTTT
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-GCAATTCATGTTTGTCTTATTT
* * * * * **** *
3200415 AAGAGACAAGCTTTGATTTTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGGCATCAAAGCA
65 AAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAAGCA
* *
3200480 TCAATGTCTA-GTACCCTAATGAAAGGAA-G
130 TCAATATC-ACGTATCCTAATGAAAGGAATG
* * * * * * *
3200509 TGTTT-TAGGTTCCCAATCCTAAAAATAATGGAGACT-GTTACGAG-AA-TCGATGCTTGTCTTA
1 TGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATG-GCAATTC-ATGTTTGTCTTA
* ** * ** * *
3200570 TTTAAGGGATGAACTTTGACTT-TA-ATGAAAATAGG-ACAAAGAAAAG-ATTTCTATGCAAAA-
62 TTTAAGAGACAAACTTTGA-TTCTATA-AAAAAT-GGTGGAAAGAAAAGCTTTTC-CTGCAAAAC
* * * * *
3200630 GACAATCATCAATATCCCTTATCCTAATG-AGGAGAATG
123 CA-AAGCATCAATATCACGTATCCTAATGAAAG-GAATG
* * ** * * * * **
3200668 TGATTT-TAGTGCCTAATCAC--AAAATGAGTAAAGATCATTACTGG-AATCCATGCTTGTCGCA
1 TG-TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGGCAATTCATGTTTGTCTTA
** * * * * * **
3200729 TTCGAG-GCACAAA-TTTAGACTT-TACAAAAATTGGAGGAAA-AAATGCCTTTT-GTGTGAAAC
62 TTTAAGAG-ACAAACTTT-GA-TTCTATAAAAAATGGTGGAAAGAAAAG-CTTTTCCTGCAAAAC
* * ** * * * * *
3200789 CAAAACATCAATAGCGTGTATCCCAATCAAAAGACTA
123 CAAAGCATCAATATCACGTATCCTAATGAAAGGAATG
* * * * **
3200826 TGTTTATGGTGCCAAATCCT-ATAAAGAATGGGGATTAGTATGGCTATTCATGTATACCTTATTT
1 TGTTTATGGTGCCTAATCCTGA-AAAGAATGGAGATTAGTATGGCAATTCATGTTTGTCTTATTT
* * * * * * *
3200890 AAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAG-AAAGCTTTTCTTACGATACCAAAGCA
65 AAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAAGCA
*
3200954 TCAATGTCTA-GTATCCTAATGAAAGGAATG
130 TCAATATC-ACGTATCCTAATGAAAGGAATG
* * * * * * **
3200984 TGTTT-TAGGTTCCCAATCCTGAAAATAATGGAGACTA-TCA--CCAGAATCGATACTTGTCTTA
1 TGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAGT-ATGGCA-ATTC-ATGTTTGTCTTA
* * * * * * *
3201045 TTTAAGGGATAAACTTTGATTTTAACAAAAACAAGG-GGCAAAGAAAAG-ATTTCCATGCAAAAG
62 TTTAAGAGACAAACTTTGATTCT-ATAAAAA-ATGGTGG-AAAGAAAAGCTTTTCC-TGCAAAAC
* * * *
3201108 AAAATCATCAATATCACTTGTCCTAATGAGAA-GAATG
123 CAAAGCATCAATATCACGTATCCTAATGA-AAGGAATG
* * * * * * * * * *
3201145 TGATTATAGTGCCTAATGAC--AAAATGAATGAAGATCATTACTAG-AATCCATATTTGTCTCAT
1 TGTTTATGGTGCCTAAT-CCTGAAAA-GAATGGAGATTAGTA-TGGCAATTCATGTTTGTCTTAT
** * * *** * * * * * *
3201207 TCGAG-GCACGAACTTAGACAGTACAAAAATTGGTGGGAA-AAATGCCTTTCATGCAAAACCAAA
63 TTAAGAG-ACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAA
* * * *
3201270 --A-C-ATATCGCGTATCCTAATGAGAA-TACTA
127 GCATCAATATCACGTATCCTAATGA-AAGGAATG
** * * *
3201299 TGTTTATGGTGCCTAATTTTGAAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTT
1 TGTTTATGGTGCCTAATCCTG-AAAAGAATGGAGATTAGTATGGCAATTCATGTTTGTCTTATTT
* * * * *
3201364 AAGAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACAA-CAAAGC
65 AAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTG-CAAAACCAAAGC
* * *
3201428 ATCAATGTCATGTATCCTAGTGAAAGGAATG
129 ATCAATATCACGTATCCTAATGAAAGGAATG
* * * * * *
3201459 TGTTT-TGGGTTCCCAATCCTGAAAATAATGGAGACT-GTTATGAG-AA-TCAATGCTTGTCTGA
1 TGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATG-GCAATTC-ATGTTTGTCTTA
* ** * * * * *
3201520 TTTAAGGGATGAACTTTAATTTTA-AAGAAAATAGG-GCAAAGGAAAG-TTTTCCATGCAAAA-G
62 TTTAAGAGACAAACTTTGATTCTATAA-AAAAT-GGTGGAAAGAAAAGCTTTTCC-TGCAAAACC
* * * ** *
3201581 AAATTCAACAATATCACTTATCCTAATG-TGGAGAACG
124 AAA-GCATCAATATCACGTATCCTAATGAAAG-GAATG
* * * * ** * * * * *
3201618 TGATTATAGTGCCT-ATTCTCAAAATGAATAAAGATCATTACTAG-AATCCATGTTTGTCTCATT
1 TGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTA-TGGCAATTCATGTTTGTCTTATT
* * * * * * * * * *
3201681 CAAG-GCGCAAACTTAGACTT-TACAAAAATTGCTAGG-AA-AAATGCCTTTCGTTCAAAACCAA
64 TAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGT-GGAAAGAAAAGCTTTTCCTGCAAAACCAA
* * * * * *
3201742 AACATCAATATTACATATCCTAA-GAAGAAGACTA
126 AGCATCAATATCACGTATCCTAATGAA-AGGAATG
* ** * * * * *
3201776 TGTTTTTGGCACCTAATCCCGAAAAGAACGGCGATTAGTATGGCTATTCAAT-TTTGCCTTATTT
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGGCAATTC-ATGTTTGTCTTATTT
* * * * ** **
3201840 AAGAGACAAACTTTAATTCTATCAAAAATGGTGGTAAA-AAATGCTTTTCTTGTGACCCCAAAGC
65 AAGAGACAAACTTTGATTCTATAAAAAATGGTGG-AAAGAAAAGCTTTTCCTGCAAAACCAAAGC
* *
3201904 ATCAATGTCAAGTATCCTAATG--AGGAATG
129 ATCAATATCACGTATCCTAATGAAAGGAATG
* * * * * * * * *
3201933 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATT-GT-TACGAAAATCGGTGCTTGTCTTATT
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTAT-GGCAATTC-ATGTTTGTCTTATT
* * * * * * **
3201996 TAAGGGA-AGAAGTTTGATT-T-TAAGGAAAATTGAGTAAAGAAAAG-ATTT--T-CAAAAGGAA
64 TAAGAGACA-AACTTTGATTCTATAA--AAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAA
* * * *
3202054 ATCATCAATATCACTTACCCTAATG-AGGAGAATG
126 AGCATCAATATCACGTATCCTAATGAAAG-GAATG
* * * * * *
3202088 TG---ATAGTGCCTAATCAC--AAAATGAATGAAGATCATTATGAG-AATCCATGTTTGTCTCAT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATG-GCAATTCATGTTTGTCTTAT
* * * * * * **
3202147 TTGAG-GCACGAACATAGA--CTATACAAAAATTGGTAGG-AA-AAATGCCTTTAATGCAAAACC
63 TTAAGAG-ACAAACTTTGATTCTATA-AAAAA-TGGT-GGAAAGAAAAGCTTTTCCTGCAAAACC
* * * * *
3202207 AAAACATCAATATCGCGTATCCTAATGAGAA-TACTA
124 AAAGCATCAATATCACGTATCCTAATGA-AAGGAATG
* * * *
3202243 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTCTTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGGCAATTCATGTTTGTCTTATTTA
* *
3202308 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGAAACCAAAGCAT
66 AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAAGCAT
*
3202373 CAATGTCTA-GTATCCTAATGAAAGGAATG
131 CAATATC-ACGTATCCTAATGAAAGGAATG
* * * * ** * *
3202402 TGTTT-TAGGTTCCCAATCCTGAAAATAATGGAGACT-GT-TACCAGAATCAATGCTTGTCTTAT
1 TGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGGCA-ATTC-ATGTTTGTCTTAT
* ** * * * * **
3202464 TTAAGGGATGAACTTTGATTTTA-ACAAAAACAGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAA
63 TTAAGAGACAAACTTTGATTCTATA-AAAAA-TGGTGGAAAGAAAAGCTTTTCC-TGCAAAACCA
* *
3202526 AATCATCAATATCACTTATCCTAATGAGAA-GAATG
125 AAGCATCAATATCACGTATCCTAATGA-AAGGAATG
* ** * * * * * *
3202561 TGATTACAGTGCCTAATCAC--AAAATGAATGAAGATCATTACTAG-AATTCATATTTGTCTCAT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGGCAATTCATGTTTGTCTTAT
** * * * * * * * * *
3202623 TCGAG-GCATAAACTTAGATTGTACAAAAATTGG-GGGAA-AAATGCCTTTCGTGCAAAACCAAA
63 TTAAGAG-ACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAA
* * * * * * *
3202685 ACATTAATATTACATATCCTAAGGAGAA-GACTA
127 GCATCAATATCACGTATCCTAATGA-AAGGAATG
* ** * * * *
3202718 TGTTTTTGGCACCTAATCCCGAAAAGAACCGG-GATTAGTATGGCTATTCAAT-TTTGCCTTATT
1 TGTTTATGGTGCCTAATCCTGAAAAGAA-TGGAGATTAGTATGGCAATTC-ATGTTTGTCTTATT
* * * * * * * **
3202781 TAAGAGATAAACTTTAATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCTTTCAACACCAAATA
64 TAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAAGC
* * * *
3202845 ATCAATGTCATGCATCCTAATGAAAGGGATG
129 ATCAATATCACGTATCCTAATGAAAGGAATG
* * * * * * *
3202876 TGTTT-TAGGTTCCCAATCCTGAAAATAATAGAAACT-GTTATGAG-AATTGATGTTTGTCTTAT
1 TGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATG-GCAATTCATGTTTGTCTTAT
* ** ** * **
3202938 TTAAGGGATGAACTTTGATT-T-TAAGGAAAATAGG-ACAAAGAAAAG-TTTTCCACGCAAAAGA
63 TTAAGAGACAAACTTTGATTCTATAA--AAAAT-GGTGGAAAGAAAAGCTTTTCC-TGCAAAACC
* * **
3202999 AAATC-TACAATATCACTTATCCTAAT-ATGGAGAATG
124 AAAGCAT-CAATATCACGTATCCTAATGAAAG-GAATG
* * * * * * * * *
3203035 TGATTATAGTGTCTAATCAC--AAAATAAATGAAG-TTCATTACTAG-AATCCATGTTTGTCTCA
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATT-AGTA-TGGCAATTCATGTTTGTCTTA
** * ** * * *** * * *
3203096 TTCGAG-GCACGAACTTAAACTTC-ACAAAAATTGGTGTTTA-AAATGCCTTTCGTGCAAAACCA
62 TTTAAGAG-ACAAACTTTGA-TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCA
* * * *
3203158 AAGCATCAATATCGCTTATCCTAATGAGAA-GACTA
125 AAGCATCAATATCACGTATCCTAATGA-AAGGAATG
* ** * * * *
3203193 TGTTTTTGGCACCTAAT-CTGGAAAAGAATGGGGATTTGTATGGCTATTCAAGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCCT-GAAAAGAATGGAGATTAGTATGGCAATTCATGTTTGTCTTATTT
* * * * *
3203257 AAGAGATAAACTTTGATTCTATAAAAAACGGTGGAAAAAAAAGC-TTT-CTG--AGACATAATAG
65 AAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAAC-CAA-AG
* * *
3203318 CATCAATGTCAAGTATCCTAATGAAGGGAATG
128 CATCAATATCACGTATCCTAATGAAAGGAATG
* * * * ** * * * * * *
3203350 TGTTT-TAAGTTCCCAATCTTCCAAAGAATGGGGACTATTACGAG-AA-TCGATGCCTT-TCCTA
1 TGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-GCAATTC-ATG-TTTGTCTTA
*** * * * * * *
3203411 TTTAA-AGGGTGAACTTTGATT-T-TAAGGAGAATCAG-GCAAAGAAAAGATTTTCTTGCAAAAG
62 TTTAAGA-GACAAACTTTGATTCTATAA--AAAAT-GGTGGAAAGAAAAGCTTTTCCTGCAAAAC
* * * ** * *
3203472 AAAATCATCAACATCATTTATCCTAATGAAGGGACTG
123 CAAAGCATCAATATCACGTATCCTAATGAAAGGAATG
* * * * * * * * * * *
3203509 TGTTTATAGTGCTTAATAAC--AAAATGAAAGAAGATCATTACTAG-AATCCTTGTTTGTCTCAT
1 TGTTTATGGTGCCTAAT-CCTGAAAA-GAATGGAGATTAGTA-TGGCAATTCATGTTTGTCTTAT
* * * *
3203571 TT--GAGGCATGAACTTAGACTT-TACAAAAATTGGT-GAGAA-AAAAGAC--TTCCTTGCAAAA
63 TTAAGAGACA--AACTTTGA-TTCTATAAAAAATGGTGGA-AAGAAAAG-CTTTTCC-TGCAAAA
* * ** ** * *
3203629 TCAAAGCACCAATATCGTGTATCCTAATGGGAGGACTA
122 CCAAAGCATCAATATCACGTATCCTAATGAAAGGAATG
* * * * * * *
3203667 TATTTATGATGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG-TATTCATATTTGTCTTATTT
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-GCAATTCATGTTTGTCTTATTT
* * * *
3203731 AAGATACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
65 AAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAAGCA
* ** *
3203796 T-AATTGTCTTGTATCCTAAT-TAAGGAAATG
130 TCAA-TATCACGTATCCTAATGAAAGG-AATG
* * *
3203826 TGTTTTAGGGT-CCTAATCTTGAAAATAATGGAGA
1 TG-TTTATGGTGCCTAATCCTGAAAAGAATGGAGA
3203860 CTATTACGAG
Statistics
Matches: 3011, Mismatches: 977, Indels: 617
0.65 0.21 0.13
Matches are distributed among these distances:
151 14 0.00
152 47 0.02
153 29 0.01
154 43 0.01
155 100 0.03
156 72 0.02
157 526 0.17
158 1162 0.39
159 790 0.26
160 132 0.04
161 86 0.03
162 9 0.00
163 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (159 bp):
TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGGCAATTCATGTTTGTCTTATTTA
AGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTGCAAAACCAAAGCAT
CAATATCACGTATCCTAATGAAAGGAATG
Found at i:3203974 original size:474 final size:476
Alignment explanation
Indices: 3199152--3203974 Score: 5600
Period size: 474 Copynumber: 10.2 Consensus size: 476
3199142 GAACTTCAAT
* * * *
3199152 TTTAAGGGATAAACATTGA-TTTAAAGAAAATAGGGCAAAGTAAAGATTTCCATGCAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * *
3199216 TCAAT-AATATCATTTATCCTATTGAGGAGAATGCGTTAATAGTGCCTAAT-AAAAAAAGAATGA
66 TC-ATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * *
3199279 AGATCAATACTAGAATCCATGCTTGGCTCATTTGAGGCACAAACTTAGACTTTACAGAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGT
* ** * * *
3199344 GGGAAAAAAG-CTTTCTTGCAAAACCGAAGTC-CCAATATCGTGTATACTAAT-ACGAAGACTAT
195 GAGAAAAAAGCCTTTCTTGCAAAACC-AAAACATCAATATCGCGTATCCTAATGA-GAAGACTAT
* * ** *
3199406 GTTTATGGTGCCTAATCCTGAAAAGAGTAGGGATTAGTATGAATATTCATGTTTGTCTTATTTAA
258 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTTAA
* *
3199471 GAG-CAAACTTTGATTCTATAAAAAACT-GTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAC
323 GAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
* * * * * * * *
3199534 CAATGTCATA-TATCCTAATGGAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATAGAGAT
387 CAATGTCA-AGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGAC
* *
3199598 TGTTATGAGAATCGATGCTTCTCTTA
451 TGTTACGAGAATCGATGCTTGTCTTA
* * * * *
3199624 TTTAAGGGATGAACCTTGA-TTTAAGGAAAACAGGGCAAAGTAAAGATTTCCATACAAAAAAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * * *
3199688 TCAACATTGTCATTTATCCTAATGAGGAAAATGCGTTTATAGCGCCTAATC-CAAAAATGAATGA
66 TCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGA
* * * * *
3199752 AGATCAATACTAGAATCCATGTTTGACTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGC
130 AGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * ** * * * * * *
3199817 GAG-GAATAGGGTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCGTAATGAGAAGACTATGC
195 GAGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGT
* * * * * *
3199881 TTATGGCGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG-TATTCGTGTTTGTCTTATTTGAG
260 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTTTGCCTTATTTAAG
* * * * * *
3199945 AGAGAAACTTTGATTCTGTCAAAAGTGGTGAAAAGAAAAGCATTTT-TT-CGACACCAAAGCCTC
324 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC-TTTTCTTGCAACACCAAAGCATC
* * * ** * *
3200008 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTAGGTTCCCAATGTTGAAAATAATAGTGACTG
388 AATGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTG
*
3200073 TTACGAGAATTGATGCTTGTCTTA
453 TTACGAGAATCGATGCTTGTCTTA
* * * * ** ***
3200097 CTTAAGGTATGTACTTTGATTTT-AGGAAAATAGGGCAAAGAAAACATTTTTATGCATTGGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
3200161 TCATCAATATCA-TTGTCCTAATGAGGATAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAA
66 TCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * *
3200225 GATCATTAATAGAATCCATGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTG
131 GATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * *
3200290 AGAGAAAAGCCTTCCTTGCAAAACCAAAACACCAATATCGCGTATCCTAATGAGAAGACTATGAT
196 AGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTT
** ** *
3200355 TATGGTGCCTAATCCTGAAAAGAATGGGGACGAGTATGAG-TATTCATGTTTATCTTTTTTAAGA
261 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTTTGCCTTATTTAAGA
* * * *** *
3200419 GACAAGCTTTGATTTTATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGTGGCATCAAAGCATCAA
325 GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
* * *
3200484 TGTCTAGTACCCTAATGAAAGGAA-GTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTT
390 TGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTGTT
3200548 ACGAGAATCGATGCTTGTCTTA
455 ACGAGAATCGATGCTTGTCTTA
* * * * *
3200570 TTTAAGGGATGAACTTTGACTTTAATGAAAATAGGACAAAGAAAAGATTTCTATGCAAAAGACAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
3200635 TCATCAATATCCCTTATCCTAATGAGGAGAATGTGATTT-TAGTGCCTAATCACAAAATGAGTAA
66 TCATCAATATCACTTATCCTAATGAGGAGAATGTG-TTTATAGTGCCTAATCACAAAATGAATGA
* * * * * *
3200699 AGATCATTACTGGAATCCATGCTTGTCGCATTCGAGGCACAAATTTAGACTTTACAAAAATTGGA
130 AGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGT
** * * * * *
3200764 G-GAAAAAATGCCTTT-TGTGTGAAACCAAAACATCAATAGCGTGTATCCCAATCAAAAGACTAT
195 GAGAAAAAA-GCCTTTCT-TGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAT
* * *
3200827 GTTTATGGTGCCAAATCCT-ATAAAGAATGGGGATTAGTATGGCTATTCATGTATACCTTATTTA
258 GTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTTA
* * * * *
3200891 AGAGACAAACTTTGATTCTATCAAAAACGGTAGAAAG-AAAGCTTTTCTTACGATACCAAAGCAT
322 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
*
3200955 CAATGTCTAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACT
387 CAATGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACT
* * * *
3201020 ATCACCAGAATCGATACTTGTCTTA
452 GTTACGAGAATCGATGCTTGTCTTA
* ** *
3201045 TTTAAGGGATAAACTTTGATTTTAACAAAAACAAGGGGCAAAGAAAAGATTTCCATGCAAAAGAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAA-TA-GGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * *
3201110 AATCATCAATATCACTTGTCCTAATGAGAAGAATGTGATTATAGTGCCTAATGACAAAATGAATG
64 AATCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* **
3201175 AAGATCATTACTAGAATCCATATTTGTCTCATTCGAGGCACGAACTTAGACAGTACAAAAATTGG
129 AAGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3201240 TGGGAAAAATGCCTTTCATGCAAAACC-AAA-A-C-ATATCGCGTATCCTAATGAGAATACTATG
194 TGAGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATG
**
3201301 TTTATGGTGCCTAATTTTGAAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTTAA
259 TTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTTAA
* ** *
3201366 GAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACAACAAAGCATC
323 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATC
* * *
3201431 AATGTCATGTATCCTAGTGAAAGGAATGTGTTTTGGGTTCCCAATCCTGAAAATAATGGAGACTG
388 AATGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTG
* * *
3201496 TTATGAGAATCAATGCTTGTCTGA
453 TTACGAGAATCGATGCTTGTCTTA
* * * * *
3201520 TTTAAGGGATGAACTTTAATTTTAAAGAAAATAGGGCAAAGGAAAGTTTTCCATGCAAAAGAAAT
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * * *
3201585 TCAACAATATCACTTATCCTAATGTGGAGAACGTGATTATAGTGCCTATTCTCAAAATGAATAAA
66 TCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * *
3201650 GATCATTACTAGAATCCATGTTTGTCTCATTCAAGGCGCAAACTTAGACTTTACAAAAATTGCT-
131 GATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* ** *
3201714 AGGAAAAATGCCTTTCGTT-CAAAACCAAAACATCAATATTACATATCCTAA-GAAGAAGACTAT
196 A-GAAAAAAGCCTTTC-TTGCAAAACCAAAACATCAATATCGCGTATCCTAATG-AGAAGACTAT
* ** * * *
3201777 GTTTTTGGCACCTAATCCCGAAAAGAACGGCGATTAGTATGGCTATTCAAT-TTTGCCTTATTTA
258 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTC-ATGTTTGCCTTATTTA
* * ** *
3201841 AGAGACAAACTTTAATTCTATCAAAAATGGTGGTAAA-AAATGCTTTTCTTGTGACCCCAAAGCA
322 AGAGACAAACTTTGATTCTATCAAAAATGGTGG-AAAGAAAAGCTTTTCTTGCAACACCAAAGCA
* * * *
3201905 TCAATGTCAAGTATCCTAATG--AGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAT
386 TCAATGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGAC
* *
3201968 TGTTACGAAAATCGGTGCTTGTCTTA
451 TGTTACGAGAATCGATGCTTGTCTTA
* * * * * *
3201994 TTTAAGGGAAGAAGTTTGATTTTAAGGAAAATTGAGTAAAGAAAAGATTT---T-CAAAAGGAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
*
3202055 TCATCAATATCACTTACCCTAATGAGGAGAATGTG---ATAGTGCCTAATCACAAAATGAATGAA
66 TCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * *
3202117 GATCATTA-TGAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTATACAAAAATTGGT
131 GATCATTACT-AGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGT
* ** *
3202181 -AGGAAAAATGCCTTTAATGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAATACTATG
195 GA-GAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATG
*
3202245 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTCTTTAAG
259 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTTAAG
* * *
3202310 AGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGAA-ACCAAAGCATC
324 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCATC
*
3202374 AATGTCTAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTG
388 AATGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTG
* *
3202439 TTACCAGAATCAATGCTTGTCTTA
453 TTACGAGAATCGATGCTTGTCTTA
** *
3202463 TTTAAGGGATGAACTTTGATTTTAACAAAAACAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
3202528 TCATCAATATCACTTATCCTAATGAGAAGAATGTGATTACAGTGCCTAATCACAAAATGAATGAA
66 TCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * **
3202593 GATCATTACTAGAATTCATATTTGTCTCATTCGAGGCATAAACTTAGA-TTGTACAAAAATTGG-
131 GATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTT-TACAAAAATTGGT
* * * * ** * *
3202656 GGGAAAAATGCCTTTCGTGCAAAACCAAAACATTAATATTACATATCCTAAGGAGAAGACTATGT
195 GAGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGT
* ** * **
3202721 TTTTGGCACCTAATCCCGAAAAGAACCGGGATTAGTATGGCTATTCAAT-TTTGCCTTATTTAAG
260 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTC-ATGTTTGCCTTATTTAAG
* * * * **
3202785 AGATAAACTTTAATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCTTTCAACACCAAATAATCA
324 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * * * *
3202849 ATGTCATGCATCCTAATGAAAGGGATGTGTTTTAGGTTCCCAATCCTGAAAATAATAGAAACTGT
389 ATGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTGT
* * *
3202914 TATGAGAATTGATGTTTGTCTTA
454 TACGAGAATCGATGCTTGTCTTA
* * *
3202937 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGTTTTCCACGCAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
3203002 TC-TACAATATCACTTATCCTAAT-ATGGAGAATGTGATTATAGTGTCTAATCACAAAATAAATG
66 TCAT-CAATATCACTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * *
3203065 AAGTTCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAAACTTCACAAAAATTGG
129 AAGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGG
*** * * * *
3203130 TGTTTAAAATGCCTTTCGTGCAAAACCAAAGCATCAATATCGCTTATCCTAATGAGAAGACTATG
194 TGAGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATG
* ** * * *
3203195 TTTTTGGCACCTAAT-CTGGAAAAGAATGGGGATTTGTATGGCTATTCAAGTTTGTCTTATTTAA
259 TTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTTAA
* * * * *
3203259 GAGATAAACTTTGATTCTATAAAAAACGGTGGAAAAAAAAGC-TTTC-TG-AGACA-TAATAGCA
323 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCA-ACACCAA-AGCA
* * * ** * *
3203320 TCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTAAGTTCCCAATCTTCCAAAGAATGGGGAC
386 TCAATGTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGAC
* *
3203385 TATTACGAGAATCGATGCCTT-TCCTA
451 TGTTACGAGAATCGATG-CTTGTCTTA
* * *
3203411 TTTAAAGGG-TGAACTTTGATTTTAAGGAGAATCA-GGCAAAGAAAAGATTTTCTTGCAAAAGAA
1 TTT-AAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * *
3203474 AATCATCAACATCATTTATCCTAATGAAGG-GACTGTGTTTATAGTGCTTAATAACAAAATGAAA
64 AATCATCAATATCACTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * *
3203538 GAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
128 GAAGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * * * *
3203603 GTGAGAAAAAAGACTTCCTTGCAAAATCAAAGCACCAATATCGTGTATCCTAATGGGAGGACTAT
193 GTGAGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAT
* * * * * *
3203668 ATTTATGATGCCTAATCTTGAAAAGAATGGGGAATAGTATGAG-TATTCATATTTGTCTTATTTA
258 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTTTGCCTTATTTA
*
3203732 AGATACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
322 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
** * * * *
3203797 -AATTGTCTTGTATCCTAAT-TAAGGAAATGTGTTTTAGGGTCCTAATCTTGAAAATAATGGAGA
387 CAA-TGTCAAGTATCCTAATGAAAGG-AATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGA
* * * *
3203860 CTATTACGAGAGTCGATGGTTTTCTTA
450 CTGTTACGAGAATCGATGCTTGTCTTA
* * * * *** **
3203887 TTTAAGGTATGTACTTTGATTTT-AGGAAAATAGGGTAAAGAAAAAATTTGTGTGCAATGGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
*
3203951 TCGTCAATATCA-TTATCCTAATGA
66 TCATCAATATCACTTATCCTAATGA
3203975 TTGGTGTCGC
Statistics
Matches: 3724, Mismatches: 540, Indels: 173
0.84 0.12 0.04
Matches are distributed among these distances:
466 7 0.00
467 256 0.07
468 2 0.00
469 102 0.03
470 39 0.01
471 2 0.00
472 219 0.06
473 780 0.21
474 1006 0.27
475 805 0.22
476 302 0.08
477 198 0.05
478 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (476 bp):
TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTG
AGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTT
TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGCCTTATTTAAGAG
ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAAT
GTCAAGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTGTTA
CGAGAATCGATGCTTGTCTTA
Found at i:3204990 original size:158 final size:157
Alignment explanation
Indices: 3203983--3206940 Score: 1163
Period size: 158 Copynumber: 18.7 Consensus size: 157
3203973 GATTGGTGTC
* * * * * *
3203983 GCAAAAAAAGCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGTTTCTTAAATAAGACAAA
1 GCAAGAAAAGCTTTT-TTTCTACCATTTTTGATAAAATCAAAGTTT-ATCCTTAAATAAGACAAA
** * * * * * * * *
3204048 CATTAATACTCATACTAATCCCCATTCTTTTCCGGATTAGGCACCATAAACATAGT-CTTCTCAT
64 CATCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCT-TCAT
* * * * * *
3204112 TAAGATATACGATATTAATGTTTTGGTTTC
128 TAGGATACATGATATTGATGCTTTGGTTTT
* * * * * * * * * *
3204142 GCAAGAAAGGCATTTTTCCCACTAATTTTG-TAAAGTCTAAGTTTATGCCTCAAATAAGAAAAAC
1 GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACAAAC
* * * * * * *
3204206 ATTGATTCTAGTAATGATCTTCATTCATTTT--GTGAATAGGCACTATAAACACGTTCTCCTT-A
65 ATCGATTCTCGTAATAATCTCCATTC-TTTTCAG-GATTAGGCACCATAAACACATTC-CCTTCA
* * * **
3204268 GTAGGATA-AGTTATATTGATGATTTTCTTTT
127 TTAGGATACA-TGATATTGATGCTTTGGTTTT
* * * ** * * *
3204299 ACATGAAAATCTTTTCTTTGC--CCTATTTTCCA-AAAATCAAAATTCATACTTTAAATAAGACA
1 GCAAGAAAAGCTTTT-TTT-CTACC-ATTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACA
* * * * * * * * * *
3204361 AGCATCGATTCTCATAACAGTCTCTAATATTTTCAAGATTA-GAACCAAAAACACATTCCCTTCA
62 AACATCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCTTCA
* * *
3204425 TTAGGATACATGACATTGATGCTTTGGTGTC
127 TTAGGATACATGATATTGATGCTTTGGTTTT
* * * * *
3204456 ACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATAAAAGTTTATCTCTTAAATAAAACAAA
1 GCAAGAAAAGCTTTT-TTTCTACCATTTTTGATAAAATCAAAGTTTATC-CTTAAATAAGACAAA
** * * * * * *** * *
3204521 CATTAATCCTCATGCA-AATCCCCATT-TTTTTAGGATTAGGCACCATAAATGTAGT-CTTCTCA
64 CATCGATTCTCGT-AATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCT-TCA
* *
3204583 TAAGGATACACGATATTGATGCTTTGGTTTT
127 TTAGGATACATGATATTGATGCTTTGGTTTT
* * * * * * * * * ** * * *
3204614 GTAAGAAAGGCTTTCTTCCCACCAATTTTCATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAAC
1 GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACAAAC
* * * * * * * *
3204679 ATGGATTCTAGTATTGATCTTCATTCATTTTC-TGATTAGGCACTATAAACACATTCTCCTT-AA
65 ATCGATTCTCGTAATAATCTCCATTC-TTTTCAGGATTAGGCACCATAAACACATTC-CCTTCAT
* * * * *
3204742 CAGGACAAATGATATTGATGAATTT-TTTTT
128 TAGGATACATGATATTGATG-CTTTGGTTTT
* * * * * *
3204772 GCATGAAAATCTTTACCTTGC--CCTATTTTCT-TTAAAATCAAAGTTCATCCCTTAAA-AAGAC
1 GCAAGAAAAGCTTT--TTTTCTACC-ATTTT-TGATAAAATCAAAGTTTAT-CCTTAAATAAGAC
* ** * * * *
3204833 AAGCATCGATTCTCGTAATGGTCTTCATTCCTTTCAGGATTAGGAACCAAAAACACATTCCCTTC
61 AAACATCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCTTC
* * * *
3204898 GTTAGGATACATGAAATTGATGGTTTGGTGTT
126 ATTAGGATACATGATATTGATGCTTTGGTTTT
* *
3204930 GCAAGAAAAGCTTTTTTTCTACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAAC
1 GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTATC-CTTAAATAAGACAAAC
** * * * * *
3204995 AT-GAATTCTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGT--CTTCTAA
65 ATCG-ATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCTTC--A
* * * *
3205057 TTAGGATAC-TCAATATTAATACTTTGGTTTC
127 TTAGGATACAT-GATATTGATGCTTTGGTTTT
* * * * * * ** * *
3205088 GTAAGAAAGGCTTTTTTCCTACTAGTTTTTG-CAAAGTTTAAGTTAATGCCTTAAATGAGACAAA
1 GCAAGAAAAGCTTTTTTTCTACCA-TTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACAAA
* * ** * * **
3205152 CA-CGGATTCTAGTAATGATCTTTATTCATTTT--GTGATTAGGCACTACAAACACATTCTTTTC
64 CATC-GATTCTCGTAATAATCTCCATTC-TTTTCAG-GATTAGGCACCATAAACACATTCCCTTC
* * **
3205214 ATTAGGA-AAAGTGATATTGATGATTTTTTTTTT
126 ATTAGGATACA-TGATATTGATG-CTTTGGTTTT
** * * * * * *
3205247 GCGTGGAAATCTTTTCTT-TACCCATTTTCT-CTAAAAT-ACAAGTTCATCCTTAAAAAAGACAA
1 GCAAGAAAAGCTTTTTTTCTA-CCATTTT-TGATAAAATCA-AAGTTTATCCTTAAATAAGACAA
* * * * * * * * **
3205309 GCATCGATTCTCATAACAGTCTCCATTATTTTGAAGATTAGGAACC-TAAAACACATTCTTTTCA
63 ACATCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCAT-AAACACATTCCCTTCA
** * * **
3205373 TTAGGATAGTTGACATTGAAGCTTTGGTACT
127 TTAGGATACATGATATTGATGCTTTGGTTTT
* * *
3205404 GCAAGAAAAGCTTTTCTTTCCTA--AGTTTTTGATAAAATCAAATTTTGTCTCTTAAGTAAGACA
1 GCAAGAAAAGCTTTT-TTT-CTACCA-TTTTTGATAAAATCAAAGTTTATC-CTTAAATAAGACA
* ** * * * * * * *
3205467 AATATTAATACTCATACTAATC-CCTATTCTTTTCAGGATCAGGCACCATAAACATAGT-CTTCT
62 AACATCGATTCTCGTAATAATCTCC-ATTCTTTTCAGGATTAGGCACCATAAACACATTCCCT-T
* * * * *
3205530 CATTAAGATATATGATATTAATGTTTTGGTTTC
125 CATTAGGATACATGATATTGATGCTTTGGTTTT
* * * * ** * * * * *
3205563 GCAAGAAAGGCATTTTTCCCATTAATTTTG-TAAAGTCGAAGTTTATGCCTCAAATAAGAAAAAC
1 GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACAAAC
* * * * * * **
3205627 ATGGATTCTAGTAATGATCTTCATTCATTTT--GTGAATAGGCACTATAAACATGTTCTCCTT-A
65 ATCGATTCTCGTAATAATCTCCATTC-TTTTCAG-GATTAGGCACCATAAACACATTC-CCTTCA
* * * * **
3205689 GTAGGA-AAAGTTATATTGATGATTTTCTTTT
127 TTAGGATACA-TGATATTGATGCTTTGGTTTT
* * * * ** * * *
3205720 ACATGAAAATCTTTTCTT-TACCCTATTTTCCA-AAAATCAAAATTCATACTTTAAATAAGACAA
1 GCAAGAAAAGCTTTTTTTCTA-CC-ATTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACAA
* * * * * * * * * *
3205783 GCATCGATTCTCATAACAGTCTCCAATATTTTCAAGATT-GGAACCAAAAACGCATTCCCTTCAT
63 ACATCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCTTCAT
* * *
3205847 TAGGATACATGACATTGATGCTTTGGTGTC
128 TAGGATACATGATATTGATGCTTTGGTTTT
* * * *
3205877 ACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATAAAAGTTTATCTCTTAAATAAAACAAA
1 GCAAGAAAAGCTTTT-TTTCTACCATTTTTGATAAAATCAAAGTTTATC-CTTAAATAAGACAAA
** * * * * * *** * *
3205942 CATTAATCCTCATGCA-AATCCCCATT-TTTTTAGGATTAGGCACCATAAATGTAGT-CTTCTCA
64 CATCGATTCTCGT-AATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCT-TCA
* *
3206004 TAAGGATACACGATATTGATGCTTTGGTTTT
127 TTAGGATACATGATATTGATGCTTTGGTTTT
* ** * * * * * * * ** * * *
3206035 GTAAGAAGGGCTTTCTTCCCACCAATTTTCATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAAC
1 GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACAAAC
* * * * * * * *
3206100 ATGGATTCTAGTATTGATCTTCATTCATTTTC-TGATTAGGCACTATAAACACATTCTCCTT-AA
65 ATCGATTCTCGTAATAATCTCCATTC-TTTTCAGGATTAGGCACCATAAACACATTC-CCTTCAT
* * * * *
3206163 TAGGACAAATGTTATTGATGAATTT-TTTTT
128 TAGGATACATGATATTGATG-CTTTGGTTTT
* * * * * *
3206193 GCATGAAAATCTTTACCTTGC--CCTATTTTCT-TTAAAATCAAAGTTCATCCCTTAAA-AAGAC
1 GCAAGAAAAGCTTT--TTTTCTACC-ATTTT-TGATAAAATCAAAGTTTAT-CCTTAAATAAGAC
* ** * * * * *
3206254 AAGCATCGATTCTCGTAATGGTCTCCATTCCTTTCAAGATTAGGAACCAAAAACACATTCCCTTT
61 AAACATCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCTTC
* * * *
3206319 GTTAGGATACATGAAATTGATGGTTTGGTGTT
126 ATTAGGATACATGATATTGATGCTTTGGTTTT
*
3206351 GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAAC
1 GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTATC-CTTAAATAAGACAAAC
** * * * ** * *
3206416 AT-GAATTCTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAGTATAGT--CTTCTAA
65 ATCG-ATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCTTC--A
* * ** *
3206478 TTAGGATAC-TCAATATTAACACTTTGGTTTC
127 TTAGGATACAT-GATATTGATGCTTTGGTTTT
* * * * * * * ** * *
3206509 GTAAGACAGGCTTTTTTCCTACTAGTTTTTG-CAAAGTTTAAGTTCATGCCTTAAATGAGACAAA
1 GCAAGAAAAGCTTTTTTTCTACCA-TTTTTGATAAAATCAAAGTTTAT-CCTTAAATAAGACAAA
* * ** * * **
3206573 CA-CGGATTCTAGTAATGATCTTTATTCATTTT--GTGATTAGGCACTACAAACACATTCTTTTC
64 CATC-GATTCTCGTAATAATCTCCATTC-TTTTCAG-GATTAGGCACCATAAACACATTCCCTTC
* * **
3206635 ATTAGGA-AAAGTGATATTGATGATTTTTTTTTTT
126 ATTAGGATACA-TGATATTGATG--CTTTGGTTTT
** * * * * ** * *
3206669 GCGTGGAAATCTTTTCTT-TACCCTTTTTCTCTAAAATCAAAGTTCATCCTTAAATAAGACAAGC
1 GCAAGAAAAGCTTTTTTTCTACCATTTTT-GATAAAATCAAAGTTTATCCTTAAATAAGACAAAC
* * * * * * * * *
3206733 ATCGATTCTTGTAACAGTCTCCATTAC-TTTCAGGATTTGGAACC-TAAAAAACATTTCTTTCAG
65 ATCGATTCTCGTAATAATCTCCATT-CTTTTCAGGATTAGGCACCAT-AAACACATTCCCTTCAT
* ** * *
3206796 TAGGATACCTGGCATTGATGCTTTGGTGTC
128 TAGGATACATGATATTGATGCTTTGGTTTT
* * * * *
3206826 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGTTTCTTAAATAAGACAAA
1 GCAAGAAAAGCTTTT-TTTCTACCATTTTTGATAAAATCAAAGTTT-ATCCTTAAATAAGACAAA
** * * * * *
3206891 CATTAATACTCATACTAATCCCCATTCTTTTCCGGATTAGGCACCATAAA
64 CATCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAA
3206941 TGTGAGCTCA
Statistics
Matches: 2003, Mismatches: 651, Indels: 290
0.68 0.22 0.10
Matches are distributed among these distances:
156 33 0.02
157 539 0.27
158 1021 0.51
159 355 0.18
160 55 0.03
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (157 bp):
GCAAGAAAAGCTTTTTTTCTACCATTTTTGATAAAATCAAAGTTTATCCTTAAATAAGACAAACA
TCGATTCTCGTAATAATCTCCATTCTTTTCAGGATTAGGCACCATAAACACATTCCCTTCATTAG
GATACATGATATTGATGCTTTGGTTTT
Found at i:3205164 original size:474 final size:474
Alignment explanation
Indices: 3203975--3206940 Score: 3741
Period size: 474 Copynumber: 6.3 Consensus size: 474
3203965 ATCCTAATGA
* * *
3203975 TTGGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGTTTCTTAAAT
1 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
*
3204040 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCCGGATTAGGCACCATAAACATAGTC
66 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * *
3204105 TTCTCATTAAGATA-TACGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACTAATT
131 TTCTCATTAGGATACT-CAATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCACTATTT
* * * *
3204169 TTGTAAAGTCTAAGTTTATGCCTCAAATAAGAAAAACATTGATTCTAGTAATGATCTTCATTCAT
195 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * * *
3204234 TTTGTGAATAGGCACTATAAACACGTTCTCCTTAGTAGGATAAGTTATATTGATG-ATTTTCTTT
260 TTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGAAAAGTGATATTGATGAATTTT-TTT
* * * * *
3204298 TACATGAAAATCTTTTCTTTGCCCTATTTTC-CAAAAATCAAAATTCATACTTTAAATAAGACAA
324 TGCATGAAAATCTTTTCTTTACCCTATTTTCTCTAAAATCAAAGTTCAT-CCTTAAATAAGACAA
* * *
3204362 GCATCGATTCTCATAACAGTCTCTAATATTTTCAAGATTA-GAACCAAAAACACATTCCCTTCAT
388 GCATCGATTCTCATAACAGTCTCCATTACTTTCAAGATTAGGAACCAAAAACACATTCCCTTCAT
3204426 TAGGATACATGACATTGATGCT
453 TAGGATACATGACATTGATGCT
* * * * *
3204448 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATAAAAGTTTATCTCTTAAAT
1 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
* * * * * **
3204513 AAAACAAACATTAATCCTCATGCAAATCCCCATT-TTTTTAGGATTAGGCACCATAAATGTAGTC
66 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * * *
3204577 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTCCCACCAATTT
131 TTCTCATTAGGATACTCAATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCA-CTATTT
** * * *
3204642 TCATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCAT
195 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* *
3204707 TTTCTGATTAGGCACTATAAACACATTCTCCTTAACAGGACAAA-TGATATTGATGAATTTTTTT
260 TTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGA-AAAGTGATATTGATGAATTTTTTT
* * * *
3204771 TGCATGAAAATCTTTACCTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAA-AAGACAA
324 TGCATGAAAATCTTTTCTTTACCCTATTTTCTCTAAAATCAAAGTTCAT-CCTTAAATAAGACAA
* ** * * * *
3204835 GCATCGATTCTCGTAATGGTCTTCATTCCTTTCAGGATTAGGAACCAAAAACACATTCCCTTCGT
388 GCATCGATTCTCATAACAGTCTCCATTACTTTCAAGATTAGGAACCAAAAACACATTCCCTTCAT
* *
3204900 TAGGATACATGAAATTGATGGT
453 TAGGATACATGACATTGATGCT
* *
3204922 TTGGTGTTGCAAGAAAAGCTTTT-TTTCTACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
1 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
* * * *
3204986 AAGACAAACATGAATTCTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
66 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * *
3205051 TTCTAATTAGGATACTCAATATTAATACTTTGGTTTCGTAAGAAAGGCTTTTTTCCTACTAGTTT
131 TTCTCATTAGGATACTCAATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCACTA-TTT
* * * * * *
3205116 TTGCAAAGTTTAAGTTAATGCCTTAAATGAGACAAACACGGATTCTAGTAATGATCTTTATTCAT
195 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * *
3205181 TTTGTGATTAGGCACTACAAACACATTCT-TTTCATTAGGAAAAGTGATATTGATGATTTTTTTT
260 TTTGTGATTAGGCACTATAAACACATTCTCCTT-AATAGGAAAAGTGATATTGATGA-ATTTTTT
* * *
3205245 TTGCGTGGAAATCTTTTCTTTACCC-ATTTTCTCTAAAAT-ACAAGTTCATCCTTAAAAAAGACA
323 TTGCATGAAAATCTTTTCTTTACCCTATTTTCTCTAAAATCA-AAGTTCATCCTTAAATAAGACA
* * * **
3205308 AGCATCGATTCTCATAACAGTCTCCATTATTTTGAAGATTAGGAACCTAAAACACATTCTTTTCA
387 AGCATCGATTCTCATAACAGTCTCCATTACTTTCAAGATTAGGAACCAAAAACACATTCCCTTCA
** *
3205373 TTAGGATAGTTGACATTGAAGCT
452 TTAGGATACATGACATTGATGCT
* * *
3205396 TTGGT-ACTGCAAGAAAAGCTTTTCTTTCCTA-AGTTTTTGATAAAATCAAATTTTGTCTCTTAA
1 TTGGTGTC-GCAAGAAAAGCTTTTCTTTCC-ACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAA
* * * *
3205459 GTAAGACAAATATTAATACTCATACTAATCCCTATTCTTTTCAGGATCAGGCACCATAAACATAG
64 ATAAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
3205524 TCTTCTCATTAAGATA-T-ATGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCATTA
129 TCTTCTCATTAGGATACTCA--ATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCACTA
* * * * *
3205587 ATTTTGTAAAGTCGAAGTTTATGCCTCAAATAAGAAAAACATGGATTCTAGTAATGATCTTCATT
192 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* ** * *
3205652 CATTTTGTGAATAGGCACTATAAACATGTTCTCCTTAGTAGGAAAAGTTATATTGATG-ATTTTC
257 CATTTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGAAAAGTGATATTGATGAATTTT-
* * * *
3205716 TTTTACATGAAAATCTTTTCTTTACCCTATTTTC-CAAAAATCAAAATTCATACTTTAAATAAGA
321 TTTTGCATGAAAATCTTTTCTTTACCCTATTTTCTCTAAAATCAAAGTTCAT-CCTTAAATAAGA
* * *
3205780 CAAGCATCGATTCTCATAACAGTCTCCAATATTTTCAAGATT-GGAACCAAAAACGCATTCCCTT
385 CAAGCATCGATTCTCATAACAGTCTCCATTACTTTCAAGATTAGGAACCAAAAACACATTCCCTT
3205844 CATTAGGATACATGACATTGATGCT
450 CATTAGGATACATGACATTGATGCT
* * * *
3205869 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATAAAAGTTTATCTCTTAAAT
1 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
* * * * * **
3205934 AAAACAAACATTAATCCTCATGCAAATCCCCATT-TTTTTAGGATTAGGCACCATAAATGTAGTC
66 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * * * *
3205998 TTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAGGGCTTTCTTCCCACCAATTT
131 TTCTCATTAGGATACTCAATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCA-CTATTT
** * * *
3206063 TCATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCAT
195 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* *
3206128 TTTCTGATTAGGCACTATAAACACATTCTCCTTAATAGGACAAA-TGTTATTGATGAATTTTTTT
260 TTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGA-AAAGTGATATTGATGAATTTTTTT
* * * *
3206192 TGCATGAAAATCTTTACCTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAA-AAGACAA
324 TGCATGAAAATCTTTTCTTTACCCTATTTTCTCTAAAATCAAAGTTCAT-CCTTAAATAAGACAA
* ** * **
3206256 GCATCGATTCTCGTAATGGTCTCCATTCCTTTCAAGATTAGGAACCAAAAACACATTCCCTTTGT
388 GCATCGATTCTCATAACAGTCTCCATTACTTTCAAGATTAGGAACCAAAAACACATTCCCTTCAT
* *
3206321 TAGGATACATGAAATTGATGGT
453 TAGGATACATGACATTGATGCT
* * *
3206343 TTGGTGTTGCAAGAAAAGCTTTT-TTTCTACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
1 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
* * * * **
3206407 AAGACAAACATGAATTCTTATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAGTATAGTC
66 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* ** * *
3206472 TTCTAATTAGGATACTCAATATTAACACTTTGGTTTCGTAAGACAGGCTTTTTTCCTACTAGTTT
131 TTCTCATTAGGATACTCAATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCACTA-TTT
* * * * *
3206537 TTGCAAAGTTTAAGTTCATGCCTTAAATGAGACAAACACGGATTCTAGTAATGATCTTTATTCAT
195 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * *
3206602 TTTGTGATTAGGCACTACAAACACATTCT-TTTCATTAGGAAAAGTGATATTGATGATTTTTTTT
260 TTTGTGATTAGGCACTATAAACACATTCTCCTT-AATAGGAAAAGTGATATTGATGA--ATTTTT
* *
3206666 TTTGCGTGGAAATCTTTTCTTTACCCT-TTTTCTCTAAAATCAAAGTTCATCCTTAAATAAGACA
322 TTTGCATGAAAATCTTTTCTTTACCCTATTTTCTCTAAAATCAAAGTTCATCCTTAAATAAGACA
** * * * *
3206730 AGCATCGATTCTTGTAACAGTCTCCATTACTTTCAGGATTTGGAACCTAAAAA-ACATTTCTTTC
387 AGCATCGATTCTCATAACAGTCTCCATTACTTTCAAGATTAGGAACC-AAAAACACATTCCCTTC
* * *
3206794 AGTAGGATACCTGGCATTGATGCT
451 ATTAGGATACATGACATTGATGCT
* *
3206818 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGTTTCTTAAAT
1 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
*
3206883 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCCGGATTAGGCACCATAAA
66 AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
3206941 TGTGAGCTCA
Statistics
Matches: 2123, Mismatches: 329, Indels: 79
0.84 0.13 0.03
Matches are distributed among these distances:
472 150 0.07
473 745 0.35
474 819 0.39
475 287 0.14
476 122 0.06
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (474 bp):
TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATTAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATTAGGATACTCAATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCACTATTTT
TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
TTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGAAAAGTGATATTGATGAATTTTTTTTG
CATGAAAATCTTTTCTTTACCCTATTTTCTCTAAAATCAAAGTTCATCCTTAAATAAGACAAGCA
TCGATTCTCATAACAGTCTCCATTACTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAG
GATACATGACATTGATGCT
Found at i:3207768 original size:19 final size:18
Alignment explanation
Indices: 3207698--3207768 Score: 53
Period size: 19 Copynumber: 4.0 Consensus size: 18
3207688 TACAAGCCAA
*
3207698 TGTATCGATACAATTTTTTG
1 TGTATCGATACAA--TTTGG
3207718 TGTATCGATAC-A-TT--
1 TGTATCGATACAATTTGG
*
3207732 T-TATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
3207750 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
3207769 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 9 0.21
14 1 0.02
15 1 0.02
16 4 0.09
18 2 0.05
19 15 0.35
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:3208971 original size:158 final size:157
Alignment explanation
Indices: 3208141--3214799 Score: 1711
Period size: 158 Copynumber: 42.2 Consensus size: 157
3208131 CATAGTCTTC
* * * * * * * * *
3208141 TCATTAAGATATACGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTT--TTCCCACTAATTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCC-CTATTTTT
* * * * * * * * * *
3208204 GTAAAGTCTAAGTTTATGCCTCAAATAAGAAAAACATGGATTCTAGTAATGATCTTCATTCATTT
64 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TTT
* * *
3208269 T--GTGAATAGGCACTATAAACACGTTCTCCT
128 TCAG-GATTAGGCACCATAAACACATTC-CCT
* * * ** * * * *
3208299 T-AGTAGGATA-AGTTATATTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTC
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCCCTATTTT-
* * * * * * * * *
3208362 CA-AAAATCAAAATTCATACTTTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCAATATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATTCTT
* * *
3208425 TTCAAGATT-GGAACCAAAAACACATTCCCT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * ** * * *
3208455 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCC-CTATTTTT-
* * * * * ** * * *
3208520 ATAGAATAAAAGTTTATCTCTTAAATAAAACAAACATTAATCCTCATGCAA--ATCCCCATT-TT
64 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTC--GTAATGATCTCCATTCTT
* *** * *
3208582 TTTAGGATTAGGCACCATAAATGTAGT-CTT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * * ** * *
3208612 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAGGGCTTT-CTTCCCACCAATTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTT-GC-CCTATTTT
* * * * * * * * * * * *
3208676 CATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TT
* *
3208741 TTC-TGATTAGGCACTATAAACACATTCTCCT
127 TTCAGGATTAGGCACCATAAACACATTC-CCT
* * * * * * * *
3208772 T-AATAGGACAAATGTTATTGATGAATTT-TTTTTGCATGAAAATCTTTACCTTGCCCTATTTTC
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTTGCAAGAAAAGCTTT-CCTTGCCCTATTTT-
* * * * *
3208835 TTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTCGTAATGGTCTTCATTCCTT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTCTTT
* *
3208899 TCAGGATTAGGAACCAAAAACACATTCCCT
128 TCAGGATTAGGCACCATAAACACATTCCCT
* * * * * *
3208929 TCGTTAGGATACATGAAATTGATGGTTTGGTGTTGCAAGAAAAGCTTT-TTTTCTACCGT-TTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGC--CC-TATTTT
* ** * * ** * * *
3208992 GATAAAATCAAAGTTTGTCTCTTACA-AAGACAAACAT-GAATTCTTATACTAATCCCCATTCTT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGTAATGATCTCCATTCTT
* * * *
3209055 TTCAAGATTAGGTACCATAAACATAGT--CT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * ** * * * *
3209084 TCTAATTAGGATAC-TCAATATTAACACTTTGGTTTCGTAAGAAAGGCTTT--TTTCCTACTAGT
1 TC--ATTAGGATACAT-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCC--CTA-T
** * ** * * * **
3209146 TTTTGCAAAGTTTAAGTTAATGCCTTAAA-AGAGACAAACA-CGGATTCTAGTAATGATCTTTAT
60 TTTTATAAAATCAAAGTTCATCCCTTAAATA-AGACAAACATC-GATTCTCGTAATGATCTCCAT
* * **
3209209 TCATTTT--GTGATTAGGCACTACAAACACATTCTTT
123 TC-TTTTCAG-GATTAGGCACCATAAACACATTCCCT
* * ** ** * * * *
3209244 TCATTAGGA-AAAGTGATATTGATGATTTTTTTTTGCGTGGAAATCTTTTCTTTACCC-ATTTTC
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCCCTATTTT-
* * * * *
3209307 TCTAAAATCAAAGTTCAT-CCTTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCATTATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATTCTT
* * * **
3209370 TTGAAGATTAGGAACC-TAAAACACATTCTTT
127 TTCAGGATTAGGCACCAT-AAACACATTCCCT
** * * ** * *
3209401 TCATTAGGATAGTTGACATTGAAGCTTTGGTACTGCAAGAAAAGCTTTTCTT-TCCTAAGTTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCCCT-A-TTTTT
** * * * ** * * *
3209465 GATAAAATCAAAGTTTGTCTCTTAAGTAAGACAAATATTAATACTCATAATAATC-CCTATTCTT
64 -ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCC-ATTCTT
* * * *
3209529 TTCAGGATCAGGCACCATAAACATAGT-CTT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * * * * * * *
3209559 CTCATTAAGATATATGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTT--TTCCCACTAATTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCC-CTATTTT
* * * * * * * * * *
3209622 TGTAAAGTCTAAGTTTATGCCTCAAATAAGAAAAACATGGATTCTAGTAATGATCTTCATTCATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TT
* * *
3209687 TT--GTGAATAGGCACTATAAACACGTTCTCC-
127 TTCAG-GATTAGGCACCATAAACACATTC-CCT
* * * * ** * * * *
3209717 TCAGTAGGA-AAAGTTATATTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTC
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCCCTATTTT-
* * * * * * * * *
3209781 CA-AAAATCAAAATTCATACTTTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCAATATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATTCTT
* * * *
3209844 TTCAAGATT-GGAACCAAAAACGCATTCCCT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * ** * * *
3209874 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCC-CTATTTTT-
* * * * * ** * * *
3209939 ATAGAATAAAAGTTTATCTCTTAAATAAAACAAACATTAATCCTCATGCAA--ATCCCCATT-TT
64 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTC--GTAATGATCTCCATTCTT
* *** * *
3210001 TTTAGGATTAGGCACCATAAATGTAGT-CTT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * * ** * *
3210031 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAGGGCTTT-CTTCCCACCAATTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTT-GC-CCTATTTT
* * * * * * * * * * * *
3210095 CATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TT
* *
3210160 TTC-TGATTAGGCACTATAAACACATTCTCCT
127 TTCAGGATTAGGCACCATAAACACATTC-CCT
* * * * * * * *
3210191 T-AATAGGACAAATGTTATTGATGAATTT-TTTTTGCATGAAAATCTTTACCTTGCCCTATTTTC
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTTGCAAGAAAAGCTTT-CCTTGCCCTATTTT-
* * * *
3210254 TTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTCGTAATGGTCTCCATTCCTT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTCTTT
* * *
3210318 TCAAGATTAGGAACCAAAAACACATTCCCT
128 TCAGGATTAGGCACCATAAACACATTCCCT
* * * * * *
3210348 TCGTTAGGATACATGAAATTGATGGTTTGGTGTTGCAAGAAAAGCTTT-TTTTCTACCGT-TTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGC--CC-TATTTT
* ** * ** * * *
3210411 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATTCTTATACTAATCCCCATTCTT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGTAATGATCTCCATTCTT
* * * *
3210475 TTCAAGATTAGGCACCATAAGCATAGT--CT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * ** * * * * *
3210504 TCTAATTAGGATAC-TCAATATTAACACTTTGGTTTCGTAAGACAGGCTTT--TTTCCTACTAGT
1 TC--ATTAGGATACAT-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCC--CTA-T
** * ** * * * * **
3210566 TTTTGCAAAGTTTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTC
60 TTTTATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC
* * * **
3210631 ATTTT--GTGATTAGGCACTACAAACATATTCTTT
125 -TTTTCAG-GATTAGGCACCATAAACACATTCCCT
* * * ** * * * ** *
3210664 TCATTAGGA-AAACTGATATTGATGATTT-TTTTTGCGTGGAAATCTTTTCTTTACCTTTTTTCT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCCCTATTTT-T
* * * * *
3210727 CTAAAATCAAAGTTCAT-CCTTAAATAAAACAAGCATCGATTCTTGTAA-CAGTCTCCATTACTT
64 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATT-CTT
* * * * *
3210790 TT-AGGATTTGGAACC-TAAAAAACATTTCTT
127 TTCAGGATTAGGCACCAT-AAACACATTCCCT
* * * * ** * * * *
3210820 TTAGTAGGACACTTGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT-TTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGC-CC-TATTTT
** ** ** * * * * *
3210884 TATAAAATCAAAGTTTGTTTCTTAAATAAGACAAACATTAATACTCATACTAATCCCCATTCTTT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TT
* *
3210949 TTC-GGATTAGGCACCATAAACATAGT--CT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * * * * * * * *
3210977 TCTAATTAAGATATACGATATTAAT-TTTTGGTTTCGCAAGAAAGGCATTT--TTCCCACTAATT
1 TC--ATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCC-CTATTT
* * * * * * * * * *
3211039 TTGTAAAGTCTAAGTTTATTCCTCAAATAAGAAAAACATGGATTCTAGTAATGATCTTCATTCAT
62 TTATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-T
* * *
3211104 TTT--GTGAATAGGCACTATAAACACGTTCTCC-
126 TTTCAG-GATTAGGCACCATAAACACATTC-CCT
* * * * ** * * * *
3211135 TCAGTAGGGTA-AGTTATATTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTC
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCCCTATTTT-
* * * * * * * * *
3211199 CA-AAAATCAAAATTCATACTTTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCAATATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATTCTT
* * *
3211262 TTCAAGATT-GGAACCAAAAACACATTCCCT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * ** * * *
3211292 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCC-CTATTTTT-
* * * * * ** * * *
3211357 ATAGAATAAAAGTTTATCTCTTAAATAAAACAAACATTAATCCTCATGCAA--ATCCCCATT-TT
64 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTC--GTAATGATCTCCATTCTT
* *** * *
3211419 TTTAGGATTAGGCACCATAAAGGTAGT-CTT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * * * * *
3211449 CTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTT-CTTCCCACCAATTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTT-GC-CCTATTTT
* * * * ** * * * * * * *
3211513 CATAAAGTCTAAGTTCGTGACTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTCATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TT
* *
3211578 TTC-TGATTAGGCACTATAAACACATTCTCCT
127 TTCAGGATTAGGCACCATAAACACATTC-CCT
* * * * * * *
3211609 T-AATAGGACAAATGATATTGATGAATTT-TTTTTGCATGAAAATCTTTACCTTGCCCTATTTTC
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTTGCAAGAAAAGCTTT-CCTTGCCCTATTTT-
* * * * *
3211672 TTTAAAATCAAAGTTAATCCCTTAAA-AAGGCAAGCATCGATTCTCGTAAT-AGTCTCCATTCCT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATTCTT
* * *
3211735 TTCAAGATTAGGAACCAAAAACACATTCCCT
127 TTCAGGATTAGGCACCATAAACACATTCCCT
* * * * * *
3211766 TCGTTAGGATACATGAAATTGATGGTTTGGTGTTGCAAGAAAAGCTTT-TTTTCTACCGT-TTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGC--CC-TATTTT
* ** * ** ** * * *
3211829 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATTCTTATACTAATCCCCATTCTTT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTCTTT
* * * *
3211894 TCAAGATTAGGCACCATAAGCATAGT--CT
128 TCAGGATTAGGCACCATAAACACATTCCCT
* * ** * * * * *
3211922 TCTAATTAGGATAC-TCAATATTAACACTTTGGTTTCGTAAGACAGGCTTT--TTTCCTACTAGT
1 TC--ATTAGGATACAT-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCC--CTA-T
** * ** * * * * **
3211984 TTTTGCAAAGTTTAAGTTAATGCCTTAAATGAGACAAACA-CGGATTCTAGTAATGATCTTTATT
60 TTTTATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATC-GATTCTCGTAATGATCTCCATT
* * **
3212048 CATTTT--GTGATTAGGCACTACAAACACATTCTTT
124 C-TTTTCAG-GATTAGGCACCATAAACACATTCCCT
* * ** ** * * * ** *
3212082 TCATTAGGA-AAAGTGATATTGATGATTTTTTTTTGCGTGGAAATCTTTTCTTTACCTTTTTTCT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCCCTATTTT-T
* * * * *
3212146 CTAAAATCAAAGTTCAT-CCTTAAATAAGACAAGCATCGATTCTTGTAA-CAGTTTCCATTAC-T
64 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATT-CTT
* * * * *
3212208 TTCAGGATTTGGAACC-TAGAAAACATTTCTT
127 TTCAGGATTAGGCACCATA-AACACATTCCCT
* * ** * * * * **
3212239 TCAGTAGGATACTTGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTA
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCC-CTATTTTTA
** ** ** * * * * *
3212304 TAAAATCAAAGTTTGTTTCTTAAATAAGACAAACATTAATACTCATACTAATCCCCATTCTTTTC
65 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTCTTTTC
* * * *
3212369 CGGATTAGGCACCATAAACATAGT-CTT
130 AGGATTAGGCACCATAAACACATTCCCT
* * * * * * * * * *
3212396 CTCATTAAGATATACGATATTAATGTTTTCGTTTCGCAAGAAAGGCATTT--TTCCCACTAATTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCC-CTATTTT
* * * * * * * * * * *
3212459 TGTAAAGTCTAAGTTTATGCCTCAAATAAGAAAAACATGGGTTCTAGTAATGATCTTCATTCATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TT
* * ** * **
3212524 TT--GTGAATAGGGATTATAAGCACAAGCTCC-
127 TTCAG-GATTAGGCACCATAAACACATTC-CCT
* * * * * * * *
3212554 TCTTTAGGATAAATGATATTGATGATTT-TTCTTTG-AATGGAAATCTTTTCTTTGGCCTATTTT
1 TCATTAGGATACATGATATTGATGCTTTGGT-TTTGCAA-GAAAAGC-TTTCCTTGCCCTATTTT
** * * * * *
3212617 CCTAAACTCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAA-CAGTCTCCATTATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATTCTT
** * * * * *
3212681 TTTTGGATT-GGGAACTTAAAACATATTCCTT
127 TTCAGGATTAGGCACCAT-AAACACATTCCCT
* * * * * * *
3212712 TCATTAGAATACCTGACATTGATGCTTTGGTGTTGCAACAAAAGCTTTTCTTTCTACCT-TTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGC--CCTATTTTT
* ** * * * ** * * **
3212776 GATAGAATCAAAGTTTGTCTCGTAAATAAAACAAACATTAATACTC-AAACAAATC-CCTATTCT
64 -ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAA-TGATCTCC-ATTCT
** * *
3212839 TTTCAGGATTAGGCACCATAAACGTAGT-CTT
126 TTTCAGGATTAGGCACCATAAACACATTCCCT
* * * * ** * * * * *
3212870 CTCATAAGGATAAACGATATTGATGCTTTAGTTTCACAAGAAAGGATTT-TTTCCCACCAATTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTT-GC-CCTATTTT
** * * * ** * ** * * * * *
3212934 CGTAAAGTCTAAGCTCAAGCCTCAAACGAG-CCAA-ATC----C-AGTATTGATTTTCATTCATT
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-TT
** *
3212992 TT-TTGATTAGGCACTATAAACACATTCTCCT
127 TTCAGGATTAGGCACCATAAACACATTC-CCT
* * ** ** * ** *
3213023 T-ATTAGGATAAATGATATTGATGATTTTTTTTTTTGCTTTG-AAATCTTTAGTTTGCCCTCTCT
1 TCATTAGGATACATGATATTGATG--CTTTGGTTTTGC-AAGAAAAGCTTT-CCTTGCCCTAT-T
* * * *
3213086 TTTCCTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCAATTCTCGT--TGTAGTCTCCG
61 TTT--ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATG-A-TCTCCA
* * * * *
3213148 TTCCTTCCAAGATT-GGTAACCAAAAACACATTCCCT
122 TTCTTTTCAGGATTAGG-CACCATAAACACATTCCCT
* * * * * * ** *
3213184 TTATTAAGATACATGACAGTGATGCTTTGGTATCGCAAGAAAAGCTTTTTTTTCACC-ATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGC-CCTATTTTT-
* * * * * * * *
3213248 ATAGAATGAAAGTTTATCTCTTAAATAAGACAAACAT-GAATACTCATACTAATC-CCTATTCCT
64 ATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGTAATGATCTCC-ATT-CT
* *
3213311 TTT-AGGATTAGGCACCATAAACATAGT--CT
126 TTTCAGGATTAGGCACCATAAACACATTCCCT
* * * * * * *
3213340 TCAAATTATGATACACGATATTGACGCTTTTGTTTCGCAAGAAAAGCTTTTTCCTT-ACCAATTT
1 TC--ATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC--TTTCCTTGCCCTATTT
* * * * ** * * * * * * *
3213404 TTCTAGAGTCTAAGTTTGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTTCATTCAT
62 TTATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-T
* * ***
3213469 TTT--GTGATTGGGCACTATAAACACATTATTT
126 TTTCAG-GATTAGGCACCATAAACACATTCCCT
* * ** * * * * *
3213500 TCATTAGGATA-AGTGATAATGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGGCCGATTTTC
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCCCTATTTT-
* * * * * * * *
3213564 CT-TATAATCATAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAA-CAGTCACCTTTAT
63 -TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGA-TCTCCATTCT
* * * *
3213627 TTTTAGGGTTGGGAACC-TAAAACACATT-CCT
126 TTTCAGGATTAGGCACCAT-AAACACATTCCCT
* * * * * * * *
3213658 CTAATTTGGATACATGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTATCTTTTCACCGT-TTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTT-TCCTTGC-CC-TATTT
* * ** * * * * *
3213722 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTCATACTAATC-CCTATTC
62 TTATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGTAATGATCTCC-ATTC
* * *
3213785 TTTTGAGGATTAGGCACCATAAACATAGT--CT
125 TTTTCAGGATTAGGCACCATAAACACATTCCCT
* ** * * * * *
3213816 TCTGATTATGATACGCGATATTGATGTTTTCGTTTTGCATGAAAGGCATTT--TTCCCCTAATTT
1 TC--ATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCCCT-ATTT
** * * * * ** * * * * *
3213879 TCGTAAAGTCTAAGTTCATGCCTCAAATGTGGCAAAAATGGATTCTAGTAATGATCTTCATTCAT
62 TTATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-T
* * ***
3213944 TTT--GTGACTAGGCACTATAAACACATTATTT
126 TTTCAG-GATTAGGCACCATAAACACATTCCCT
** ** * * * * *
3213975 TCATTAGGATA-AGTGATATTGATAATTTCCTTTTACATG-GAAGTCTTTTCTTTGCCCGATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTTGCAAGAAAAG-C-TTTCCTTGCCCTATTTT
* * * ** *** * *
3214038 CCT-TAAAATCATAA-TTCATCCCTTAAATAAGACAAGCATCAATTCTCGCAACAATAAGCTTTA
63 --TATAAAATCA-AAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC
* * * * **
3214101 TTTTTAGGGTTGGGAACC-TAAAACACATTCTTT
125 TTTTCAGGATTAGGCACCAT-AAACACATTCCCT
* * * * ** *** * *
3214134 TTATTAGAATACATGACATTGATGCATTGGGGTCAAAAGAAAAGCATTTCTTTCCACCGT-TTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGC-CC-TATTTT
* * ** * * * * *
3214198 GATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACAT-GAATACTCATACCT-ATC-CCTATTC
63 TATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGTA-ATGATCTCC-ATTC
* * * *
3214260 TTTTCAGGATTAGGAACCATAAATATAGT--CT
125 TTTTCAGGATTAGGCACCATAAACACATTCCCT
* ** * * * * * * * *
3214291 TCTGATTATGATACGCGATATTGATGTTTTTGTTTCGTATGAAAGGCATTT--TTCCCACCAATT
1 TC--ATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTT-GC-CCTATT
* * * * * * * * * * *
3214354 TTTGTAAAGTCAATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCA
61 TTTATAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTC-
* * * *
3214419 TTTT--GTCATTATGCACTACAAACACATTCTCC-
125 TTTTCAG-GATTAGGCACCATAAACACATTC-CCT
* * * * ** * * * * **
3214451 TCATTAGGATAAAAGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTCCTTGCCCTATTTTTA
* * * * * *
3214515 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACGGTCTCCATTATTTTT
65 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTCTTTTC
* * *
3214580 AGGATTGGGAACC-TCAAACACATTTCCT
130 AGGATTAGGCACCAT-AAACACATTCCCT
* ** * * * ** * * *
3214608 TCATTATGATAGGTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCGT-TTATG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGC-CC-TATTTTT
** * * * * * *
3214672 ATAAAATCAAAGTTTGTCTCCCTAAATATGACAAACAT-GAATACTCATACTAATC-CCTATTCT
64 ATAAAATCAAAGTTCATC-CCTTAAATAAGACAAACATCG-ATTCTCGTAATGATCTCC-ATTCT
* ** * *
3214735 TTTCAGGATTAGGCACCACAAACGTAGT-CTT
126 TTTCAGGATTAGGCACCATAAACACATTCCCT
* * *
3214766 CTCATAAGGATACACGATATTGATGCTTTAGTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTT
3214800 CACAATAAGT
Statistics
Matches: 4582, Mismatches: 1551, Indels: 735
0.67 0.23 0.11
Matches are distributed among these distances:
151 44 0.01
152 8 0.00
153 17 0.00
154 6 0.00
155 26 0.01
156 285 0.06
157 1260 0.27
158 1902 0.42
159 868 0.19
160 108 0.02
161 15 0.00
162 43 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (157 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCCTTGCCCTATTTTTAT
AAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATGATCTCCATTCTTTTCA
GGATTAGGCACCATAAACACATTCCCT
Found at i:3209097 original size:473 final size:473
Alignment explanation
Indices: 3208126--3218131 Score: 11263
Period size: 473 Copynumber: 21.2 Consensus size: 473
3208116 GATCCTAACA
* * * *
3208126 ATAAACATAGTCTTCTCATTAAGATATACGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* ** * *
3208191 TCCCACTAATTTT-GTAAAGTCTAAGTTTATGCCTCAAATAAGAAAAACATGGATTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * *
3208255 ATCTTCATTCATTTTGTGAATAGGCACTATAAACACGTTCTCCTTAGTAGGATAAGTTATATTGA
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
* * ** * * *
3208320 TGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCAAAAATCAAAATTCATACTTTA
195 TGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTA
* *
3208385 AATAAGACAAGCATCGATTCTCATAACAGTCTCCAATATTTTCAAGATT-GGAACCAAAAACACA
259 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACA
* *
3208449 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
324 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * * * * *
3208514 TTTTTGATAGAATAAAAGTTTATCTCTTAAATAAAACAAACATTAATCCTCATGCAAATCCCCAT
389 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
*
3208579 T-TTTTTAGGATTAGGCACC
454 TCTTTTCAGGATTAGGCACC
** * * * *
3208598 ATAAATGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAGGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-T
* * *
3208663 TCCCACCAATTTTCATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
3208728 ATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTAATAGGACAAATGTTATTGA
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
* * *
3208793 TGAATTTTTTTTGCATGAAAATCTTTACCTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT
195 TG-ATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCTT
** * ** * *
3208858 AAA-AAGACAAGCATCGATTCTCGTAATGGTCTTCATTCCTTTCAGGATTAGGAACCAAAAACAC
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
* * * * *
3208922 ATTCCCTTCGTTAGGATACATGAAATTGATGGTTTGGTGTTGCAAGAAAAGCTTTT-TTTCTACC
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * *
3208986 GTTTTTGATAAAATCAAAGTTTGTCTCTTACA-AAGACAAACATGAATTCTTATACTAATCCCCA
388 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* *
3209050 TTCTTTTCAAGATTAGGTACC
453 TTCTTTTCAGGATTAGGCACC
* * * * ** *
3209071 ATAAACATAGTCTTCTAATTAGGATACTCAATATTAACACTTTGGTTTCGTAAGAAAGGCTTTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* * * * * * ** * * *
3209136 TCCTACTAGTTTTTGCAAAGTTTAAGTTAATGCCTTAAAAGAGACAAACACGGATTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
3209201 ATCTTTATTCATTTTGTGATTAGGCACTACAAACACATTCT-TTTCATTAGGA-AAAGTGATATT
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAA-TGATATT
* *
3209264 GATGATTTTTTTTTGCGTGGAAATCTTTTCTTTACCC-ATTTTCTCTAAAATCAAAGTTCAT-CC
193 GATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCT-TAAAATCAAAGTTCATCCC
* * * *
3209327 TTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTATTTTGAAGATTAGGAACCTAAAAC
256 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAAC
** ** * *
3209392 ACATTCTTTTCATTAGGATAGTTGACATTGAAGCTTTGGT-ACTGCAAGAAAAGCTTTTCTTTCC
321 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCC
* * * * * *
3209456 TA-AGTTTTTGATAAAATCAAAGTTTGTCTCTTAAGTAAGACAAATATTAATACTCATAATAATC
385 -ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* *
3209520 CCTATTCTTTTCAGGATCAGGCACC
449 CCCATTCTTTTCAGGATTAGGCACC
* * * * *
3209545 ATAAACATAGTCTTCTCATTAAGATATATGATATTAATGTTTTGGTTTCGCAAGAAAGGCATTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* ** * *
3209610 TCCCACTAATTTT-GTAAAGTCTAAGTTTATGCCTCAAATAAGAAAAACATGGATTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * *
3209674 ATCTTCATTCATTTTGTGAATAGGCACTATAAACACGTTCTCCTCAGTAGGA-AAAGTTATATTG
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAA-TGATATTG
* * ** * * *
3209738 ATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCAAAAATCAAAATTCATACTTT
194 ATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTT
* * *
3209803 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCAATATTTTCAAGATT-GGAACCAAAAACGC
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
*
3209867 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * * * *
3209932 ATTTTTGATAGAATAAAAGTTTATCTCTTAAATAAAACAAACATTAATCCTCATGCAAATCCCCA
388 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
*
3209997 TT-TTTTTAGGATTAGGCACC
453 TTCTTTTCAGGATTAGGCACC
** * * * *
3210017 ATAAATGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAGGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-T
* * *
3210082 TCCCACCAATTTTCATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
3210147 ATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTAATAGGACAAATGTTATTGA
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
* * *
3210212 TGAATTTTTTTTGCATGAAAATCTTTACCTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTT
195 TG-ATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCTT
** ** *
3210277 AAA-AAGACAAGCATCGATTCTCGTAATGGTCTCCATTCCTTTCAAGATTAGGAACCAAAAACAC
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
* * * * *
3210341 ATTCCCTTCGTTAGGATACATGAAATTGATGGTTTGGTGTTGCAAGAAAAGCTTTT-TTTCTACC
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * *
3210405 GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATTCTTATACTAATCCCCA
388 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
*
3210470 TTCTTTTCAAGATTAGGCACC
453 TTCTTTTCAGGATTAGGCACC
* * * * * ** * *
3210491 ATAAGCATAGTCTTCTAATTAGGATACTCAATATTAACACTTTGGTTTCGTAAGACAGGCTTTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* * * * * * * *
3210556 TCCTACTAGTTTTTGCAAAGTTTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
3210621 ATCTTTATTCATTTTGTGATTAGGCACTACAAACATATTCT-TTTCATTAGGA-AAACTGATATT
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAA-TGATATT
* * *
3210684 GATGATTTTTTTTGCGTGGAAATCTTTTCTTT-ACCTTTTTTCTCTAAAATCAAAGTTCAT-CCT
193 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCT-TAAAATCAAAGTTCATCCCT
* * * *
3210747 TAAATAAAACAAGCATCGATTCTTGTAACAGTCTCCATTACTTTT-AGGATTTGGAACCTAAAAA
257 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTA-TTTTCAAGATTGGGAACC-AAAAA
* * * * * * *
3210811 -ACATTTCTTTTAGTAGGACACTTGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
320 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
3210875 ACCGTTTTTTATAAAATCAAAGTTTGTTTCTTAAATAAGACAAACATTAATACTCATACTAATCC
385 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
3210940 CCATTCTTTTTC-GGATTAGGCACC
450 CCATTC-TTTTCAGGATTAGGCACC
* * * * *
3210964 ATAAACATAGTCTTCTAATTAAGATATACGATATTAAT-TTTTGGTTTCGCAAGAAAGGCATTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* ** * * *
3211028 TCCCACTAATTTT-GTAAAGTCTAAGTTTATTCCTCAAATAAGAAAAACATGGATTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * * * *
3211092 ATCTTCATTCATTTTGTGAATAGGCACTATAAACACGTTCTCCTCAGTAGGGTAAGTTATATTGA
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
* * ** * * *
3211157 TGATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCAAAAATCAAAATTCATACTTTA
195 TGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTA
* *
3211222 AATAAGACAAGCATCGATTCTCATAACAGTCTCCAATATTTTCAAGATT-GGAACCAAAAACACA
259 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACA
* *
3211286 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCA
324 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * * * * *
3211351 TTTTTGATAGAATAAAAGTTTATCTCTTAAATAAAACAAACATTAATCCTCATGCAAATCCCCAT
389 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
*
3211416 T-TTTTTAGGATTAGGCACC
454 TCTTTTCAGGATTAGGCACC
** * * *
3211435 ATAAAGGTAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-T
* * * *
3211500 TCCCACCAATTTTCATAAAGTCTAAGTTCGTGACTCAAATGAGCCAAACATGGATTCTAGTATTG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
3211565 ATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTAATAGGACAAATGATATTGA
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
* * * *
3211630 TGAATTTTTTTTGCATGAAAATCTTTACCTTGCCCTATTTTCTTTAAAATCAAAGTTAATCCCTT
195 TG-ATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCTT
* * ** *
3211695 AAA-AAGGCAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCAAGATTAGGAACCAAAAACAC
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
* * * * *
3211759 ATTCCCTTCGTTAGGATACATGAAATTGATGGTTTGGTGTTGCAAGAAAAGCTTTT-TTTCTACC
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * *
3211823 GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATTCTTATACTAATCCCCA
388 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
*
3211888 TTCTTTTCAAGATTAGGCACC
453 TTCTTTTCAGGATTAGGCACC
* * * * * ** * *
3211909 ATAAGCATAGTCTTCTAATTAGGATACTCAATATTAACACTTTGGTTTCGTAAGACAGGCTTTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* * * * * * ** * *
3211974 TCCTACTAGTTTTTGCAAAGTTTAAGTTAATGCCTTAAATGAGACAAACACGGATTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
3212039 ATCTTTATTCATTTTGTGATTAGGCACTACAAACACATTCT-TTTCATTAGGA-AAAGTGATATT
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAA-TGATATT
* * *
3212102 GATGATTTTTTTTTGCGTGGAAATCTTTTCTTT-ACCTTTTTTCTCTAAAATCAAAGTTCAT-CC
193 GATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCT-TAAAATCAAAGTTCATCCC
* * * * * *
3212165 TTAAATAAGACAAGCATCGATTCTTGTAACAGTTTCCATTACTTTCAGGATTTGGAACCTAGAAA
256 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACC-AAAAA
* * * * *
3212230 -ACATTTCTTTCAGTAGGATACTTGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
320 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * *
3212294 ACCGTTTTT-ATAAAATCAAAGTTTGTTTCTTAAATAAGACAAACATTAATACTCATACTAATCC
385 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
*
3212358 CCATTCTTTTCCGGATTAGGCACC
450 CCATTCTTTTCAGGATTAGGCACC
* * * * *
3212382 ATAAACATAGTCTTCTCATTAAGATATACGATATTAATGTTTTCGTTTCGCAAGAAAGGCATTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* ** * * *
3212447 TCCCACTAATTTT-GTAAAGTCTAAGTTTATGCCTCAAATAAGAAAAACATGGGTTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * **
3212511 ATCTTCATTCATTTTGTGAATAGGGATTATAAGCACAAGCTCCTCT-TTAGGATAAATGATATTG
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-TATTAGGATAAATGATATTG
* * * * *
3212575 ATGATTTTTCTTTGAATGGAAATCTTTTCTTTGGCCTATTTTCCTAAACTCAAAGTTCATTCCTT
194 ATGATTTTT-TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTT
*** ** *
3212640 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTTGGATTGGGAACTTAAAACAT
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
* * * * * *
3212705 ATTCCTTTCATTAGAATACCTGACATTGATGCTTTGGTGTTGCAACAAAAGCTTTTCTTTCTACC
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * * *
3212770 TTTTTTGATAGAATCAAAGTTTGTCTCGTAAATAAAACAAACATTAATACTCAAACAAATCCCTA
388 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
3212835 TTCTTTTCAGGATTAGGCACC
453 TTCTTTTCAGGATTAGGCACC
* * * * * *
3212856 ATAAACGTAGTCTTCTCATAAGGATAAACGATATTGATGCTTTAGTTTCACAAGAAAGGATTTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTT
* ** * * * *
3212921 TCCCACCAATTTTCGTAAAGTCTAAGCTCAAGCCTCAAACGAG-C---CA---AATCCAGTATTG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
3212979 ATTTTCATTCATTTTTTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGA
* * ** *
3213044 TGATTTTTTTTTTTGCTTTGAAATCTTTAGTTTGCCCTCTCTTTTCCTTAAAATCAAAGTTCATC
195 TGA---TTTTTTTTGCATGGAAATCTTTTCTTTG-CC-CTATTTT-CTTAAAATCAAAGTTCATC
* *** * ** * *
3213109 CCTTAAA-AAGACAAGCATCAATTCTCGTTGTAGTCTCCGTTCCTTCCAAGATTGGTAACCAAAA
254 CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAA
* * * * *
3213173 ACACATTCCCTTTATTAAGATACATGACAGTGATGCTTTGGTATCGCAAGAAAAGCTTTT-TTTT
319 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
3213237 CACCATTTTTGATAGAATGAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATC
384 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC
*
3213302 CCTATTCCTTTT-AGGATTAGGCACC
449 CCCATT-CTTTTCAGGATTAGGCACC
** * * * *
3213327 ATAAACATAGTCTTCAAATTATGATACACGATATTGACGCTTTTGTTTCGCAAGAAAAGCTTTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * *
3213392 CCTTACCAATTTTTC-TAGAGTCTAAGTTTGTGCCTCAAATGACACAAACATGGATTCTAGTAAT
66 CC-CACCAA-TTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * *
3213456 GATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTAT-TTTCATTAGGATAAGTGATAAT
129 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATT
* * * * *
3213520 GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGGCCGATTTTCCTTATAATCATAGTTCATCCC
193 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCC
* * * * * * *
3213585 TTAAATAAGACAAGCATCGATTCTCGCAACAGTCACCTTTATTTTTAGGGTTGGGAACCTAAAAC
256 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAAC
* * * * *
3213650 ACATT-CCTCTAATTTGGATACATGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTATCTTTTC
321 ACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
3213714 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
385 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* *
3213779 CTATTCTTTTGAGGATTAGGCACC
450 CCATTCTTTTCAGGATTAGGCACC
* * * * * * *
3213803 ATAAACATAGTCTTCTGATTATGATACGCGATATTGATGTTTTCGTTTTGCATGAAAGGCATTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* * * * *
3213868 TCCC-CTAATTTTCGTAAAGTCTAAGTTCATGCCTCAAATGTGGCAAAAATGGATTCTAGTAATG
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
3213932 ATCTTCATTCATTTTGTGACTAGGCACTATAAACACATTAT-TTTCATTAGGATAAGTGATATTG
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATTG
* * * * *
3213996 ATAATTTCCTTTTACATGGAAGTCTTTTCTTTGCCCGATTTTCCTTAAAATCATAA-TTCATCCC
194 ATGATTT-TTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CTTAAAATCA-AAGTTCATCCC
* * * *** * * * * *
3214060 TTAAATAAGACAAGCATCAATTCTCGCAACAATAAGCTTTATTTTTAGGGTTGGGAACCTAAAAC
256 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAAC
** * * * * ** *
3214125 ACATTCTTTTTATTAGAATACATGACATTGATGCATTGGGGTCAAAAGAAAAGCATTTCTTTCCA
321 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
*
3214190 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCATACCT-ATCC
386 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA-CTAATCC
* *
3214254 CTATTCTTTTCAGGATTAGGAACC
450 CCATTCTTTTCAGGATTAGGCACC
* * * * * * * *
3214278 ATAAATATAGTCTTCTGATTATGATACGCGATATTGATGTTTTTGTTTCGTATGAAAGGCATTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
*
3214343 TCCCACCAATTTTTGTAAAGTC-AATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
65 TCCCACCAATTTTCGTAAAGTCTAA-GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * * *
3214407 GATCTTCTTTCATTTTGTCATTATGCACTACAAACACATTCTCCTCATTAGGATAAAAGATATTA
129 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTG
*
3214472 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTCCTAAAATCAAAGTTCATCCCTT
194 ATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTT
* * * * **
3214536 AAATAAGACAAGCATCGATTCTTGTAACGGTCTCCATTATTTTTAGGATTGGGAACCTCAAACAC
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
* * ** *
3214601 ATTTCCTTCATTATGATAGGTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCACC
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * *
3214665 GTTTATGATAAAATCAAAGTTTGTCTCCCTAAATATGACAAACATGAATACTCATACTAATCCCT
388 GTTTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTAATCCCC
3214730 ATTCTTTTCAGGATTAGGCACC
452 ATTCTTTTCAGGATTAGGCACC
* * *
3214752 ACAAACGTAGTCTTCTCATAAGGATACACGATATTGATGC-----TTT--------A-G---TTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * *
3214800 --CA-CAA------T-AAGTATAAGTACATGCCTTAAATGAGACAAACATGGATTCTAGTAATGA
66 CCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * *
3214855 TCTTCATTCATTTTGGGATTAGACCCTATAAACGCATTC-CTCTCATTAGGATAAATGATATTGA
131 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC-CTTATTAGGATAAATGATATTGA
* * *
3214919 TGATTTTCTTTTGGATGGAAATCTTTTCTTTG--C--TCTTC-TGAAATCAAAGTTCATCCCTTA
195 TGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTA
* * * * *** **
3214979 AATAAGATAAACATTGATTCTCGTAATAGTCTCCATTATTTTTTGGATTGGGAACCAAAAATGCA
259 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACA
* * * ** * * * * *
3215044 TTCCTTTCATTAGGATACCTAACATTGACACTTTAGTGTCGCAAGAAAA-TTTTTTTTTCTACCA
324 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * *
3215108 TTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATACTCATATTAATCCCCAT
389 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
*
3215173 TCTTTTCAAGATTAGGCACC
454 TCTTTTCAGGATTAGGCACC
* *
3215193 ATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * * *
3215258 ACGCACTAAATTTGGTAAAGTCTAAGTTCGTGCCTCAAATGTA-ACAAACTTGGATTCTAGTAAT
66 -CCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATG-AGACAAACATGGATTCTAGTAAT
* * * * * *
3215322 GATCTTTATTCTTTTTGAGATTAGGCACTATAAGCATATTCTCCTCATTAGGATAAATGATATTG
129 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTG
* * *
3215387 ATGATTTTATTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTAAAATTAAAGTTCATCCGTT
194 ATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTT
* * * *
3215452 ---TATGACAAGCATCGATTCTCGTAACA-TCTCCACTATTTTTAAGATTGGGAACCTAAAACAC
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
* * * * * * * * * * * *
3215513 ATTCCCATCATTAGGATACAAGACATTAATGCATTGGGGTTGCAGGGAAAGCTTTTATTTTCGCT
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * * *
3215578 ATTTTTGATAGAATCAAAGTTTGTCCCCTAAATAAGACAAATATAAATACTCATACTAATCCTCT
388 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
3215643 TTCTTTTCAGGATTAGGCACC
453 TTCTTTTCAGGATTAGGCACC
* *
3215664 ATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTA
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * ** * * **
3215729 CCCACCGAGTTTT-GTAAAGTCTAAGCTCGTAG-CTCAAACAAGATAAAGATGCCTTCTAGTAAT
66 CCCACC-AATTTTCGTAAAGTCTAAGTTCGT-GCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * * * * *
3215792 GATCTTCTTTCATTTTGAGATTAGGTACTATAAACTCGTTCTTCTCATTAAGATAATTGATATTG
129 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTG
* * * *
3215857 ATGATTTTCTTTTGCATGCAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAATTCATTCCT
194 ATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCT
* * * * ** * *
3215922 TTAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTGAAGATTAAGAACAAAAAACG
257 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACA
**
3215987 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAAAAGAAAAGCTTTT-TTCTCCA
322 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT-TCCA
* * * *
3216051 CCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATGAATAGTTATACTAATCCC
386 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
3216116 CATAT-TTTTCAGGATTAGGCACC
451 CAT-TCTTTTCAGGATTAGGCACC
* * * * * * *
3216139 ATAAACATAGTTTTCTCATTAGGATACGCAATATTGATGTTTTGGTTTTGCATGAAAGGTATTTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTT
* * * * *
3216204 TTCCATCAATTTTTGTAAAGTCTAAATGT-GTGCCTCGAAT-AGGACAAACATGGATTCTAGTAA
65 TCCCACCAATTTTCGTAAAGTCTAAGT-TCGTGCCTCAAATGA-GACAAACATGGATTCTAGTAA
*** * * * *
3216267 TGATCTTCATTCATTTCAAGATTAGGCATTATAAGCACATTCTGCTTATTTGGATAAATG--ATT
128 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATT
* *
3216330 GATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCCATTTTCTTAAAATCAAAGTTCATCCCT
193 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCT
* * * *
3216395 T-TAT-A-ACAAGCATCGATTCGT-GTAACAGTCTCCATTATTTTCAAGATTAGGATCCTAAAAC
257 TAAATAAGACAAGCATCGATTC-TCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAAC
* * * * *
3216456 ACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTTGCAAGCAAAGCTTTTATTTCTA
321 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * *
3216521 CCGTTTTTGACAAAATCAAAGTTTGTCTCTTAACTCAGACAAACATGAATAATCATACTATTCCC
386 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
*
3216586 CATTCTTTTTAGGATTAGGCACC
451 CATTCTTTTCAGGATTAGGCACC
* * * * **
3216609 ATAAACATAGTTTTCTTATTGGGATACATGATATTGATGCTTTGGTTTCATAAGAAAGGCTATTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCT-TTT
* * * * * * *
3216674 ACCCACCAATTTTTGTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAATAAGGATTCAAGTAATA
65 TCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
3216739 ATCTTCATTCATTTTGTGATTAGGCGCTATAAAAACATTCT-CTTCATAAGGATAAAAGATATTG
130 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATTG
** * * * * * *
3216803 ACAATTTGCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTAACATTAAAGTT-ATTCCTT
194 ATGATTT-TTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTT
* * * * * *
3216867 AAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTATTTTTAGGATTGGGAACCTAAAACAT
258 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACAC
* * * *
3216932 ATTCCCTTCATTAGGATATATGACATTGATGCTTTAGTGTTGCAAGAAAAGCTTTTATTTCCACC
323 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * * *
3216997 GTTTTTGATAGAATCAAAGTTGGTCTCTTAAATAAGAGAAACGTGAAAAGTCATAATAATCACCA
388 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
*
3217062 TTCTTTTCAAGATTAGGCACC
453 TTCTTTTCAGGATTAGGCACC
* * * * *
3217083 ATTAACATAGTCTTCTCTTTAGGATACGA-GATATTGATGTTTTAGTTTCGCAATAAAGGCATTT
1 ATAAACATAGTCTTCTCATTAGGATAC-ACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTT
* * *
3217147 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTAG-CTCAAATGAGACAAATATGGATTCTAGAAA
64 TTCCCACCAATTTTCGTAAAGTCTAAGTTCGT-GCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * *
3217211 TGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTTTCCTCATTAGGATAAATTATATT
128 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATT
* * * * **
3217276 AACGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCATAAAATCAAAGTTCATATCT
193 GATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCT
* * * * *
3217341 TAAATAAGA-AAGGCTTCGATTCTCATAATAGTCTCCCTTATTTTTAAGATTGGGAACCAAAAAC
257 TAAATAAGACAA-GCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAAC
*
3217405 ACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
321 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * *
3217470 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAATAAACATTAATACTCAAACTAATCCC
386 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* *
3217535 CAGTCTTTTTAGGATTAGGCACC
451 CATTCTTTTCAGGATTAGGCACC
* * * * * * *
3217558 ATTAACGTAGTCTTCTCATAACGATACGA-GAGATTAATGCTTTGGTTTGGCAAGAAAGGCTTTC
1 ATAAACATAGTCTTCTCATTAGGATAC-ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-
* * * * * *
3217622 TTCCCGCTAATTTTCGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAACCTGGATTCTAGTAAA
64 TTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * *
3217687 GATCTTCATTCATTTTGTGATTAGGCACTGTAAAGACATTCT-TTTCATTAGGATAACTTATATT
129 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATT
* * *
3217751 GATAATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCATTAAAATGATAGTTCATCCCT
193 GATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC-TTAAAATCAAAGTTCATCCCT
* * * * * * * *
3217816 TAAATAAGACAAGCAACGATTGTCGCAACTGTCTCCATTATTTTTATGATTGGGATCCTAAAACA
257 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACA
* * *
3217881 CATTCCTTTCATTAGGATACATAACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
322 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * *
3217946 TAG-TTTTGATAGAATCTAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CC
387 -CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
*
3218009 CATTCTTTTCATGATTAGGCACC
451 CATTCTTTTCAGGATTAGGCACC
* * *** * ** * *
3218032 AAAAATATAGTCTTCTCATTAGGATATGTGATATTGATG-TTCTAGTTTCATATGAAAAGCATTT
1 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT-TGGTTTCGCAAGAAAGGC-TTT
** *
3218096 TTTTCACCAATTTTTGTAAAGTCTATA-TTCGTGCCT
64 TTCCCACCAATTTTCGTAAAGTCTA-AGTTCGTGCCT
3218132 GTAGACACCT
Statistics
Matches: 8076, Mismatches: 1265, Indels: 384
0.83 0.13 0.04
Matches are distributed among these distances:
441 94 0.01
442 143 0.02
443 3 0.00
444 1 0.00
445 1 0.00
446 128 0.02
447 3 0.00
453 3 0.00
454 3 0.00
455 1 0.00
456 3 0.00
458 3 0.00
460 1 0.00
461 3 0.00
462 2 0.00
467 1 0.00
468 67 0.01
469 135 0.02
470 556 0.07
471 545 0.07
472 943 0.12
473 1841 0.23
474 1816 0.22
475 1315 0.16
476 387 0.05
477 11 0.00
478 67 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
CCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGAT
GATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAA
TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATT
CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC
TTTTCAGGATTAGGCACC
Found at i:3216130 original size:475 final size:474
Alignment explanation
Indices: 3214819--3218131 Score: 3861
Period size: 475 Copynumber: 7.0 Consensus size: 474
3214809 TATAAGTACA
* * * *
3214819 TGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGACCCTAT
1 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTAT
* * *
3214884 AAACGCATTCCTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGGATGGAAATCTTTTCTT
66 AAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * * *
3214949 TG--C--TCTTC-TGAAATCAAAGTTCATCCCTTAAATAAGATAAACATTGATTCTCGTAATAGT
131 TGCCCTATTTTCTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
** * ** * * * **
3215009 CTCCATTATTTTTTGGATTGGGAACCAAAAATGCATTCCTTTCATTAGGATACCTAACATTGACA
196 CTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
3215074 CTTTAGTGTCGCAAGAAAA-TTTTTTTTTCTACCATTTTTGGTAGAATCAAAGTTTGTCTCTTAA
261 CTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
3215138 ATAAGACAAACATAAATACTCATATTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
326 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * *
3215203 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTACGCACTAAA
391 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTACCCACCAAT
*
3215268 TTTGGTAAAGTCTAAGTTCG
455 TTTTGTAAAGTCTAAGTTCG
* * *
3215288 TGCCTCAAATGTA-ACAAACTTGGATTCTAGTAATGATCTTTATTCTTTTTGAGATTAGGCACTA
1 TGCCTCAAATG-AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTA
* * * * *
3215352 TAAGCATATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTTTCT
65 TAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* *
3215417 TTGCCCTATTTTCTTAAAATTAAAGTTCA-TCCGTT---TATGACAAGCATCGATTCTCGTAACA
130 TTGCCCTATTTTCTTAAAATCAAAGTTCATTCC-TTAAATAAGACAAGCATCGATTCTCGTAACA
* * * *
3215478 -TCTCCACTATTTTTAAGATTGGGAACCTAAAACACATTCCCATCATTAGGATACAAGACATTAA
194 GTCTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * * * * *
3215542 TGCATTGGGGTTGCAGGGAAAGCTTTTATTTTCGCTATTTTTGATAGAATCAAAGTTTGTCCCCT
259 TGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
3215607 AAATAAGACAAATATAAATACTCATACTAATCCTCTTTCTTTTCAGGATTAGGCACCATAAACAT
324 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
*
3215672 AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTACCCACCGA
389 AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTACCCACCAA
* *
3215737 GTTTTGTAAAGTCTAAGCTCG
454 TTTTTGTAAAGTCTAAGTTCG
** * * ** * *
3215758 TAG-CTCAAACAAGATAAAGATGCCTTCTAGTAATGATCTTCTTTCATTTTGAGATTAGGTACTA
1 T-GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTA
* * * * *
3215822 TAAACTCGTTCTTCTCATTAAGATAATTGATATTGATGATTTTCTTTTGCATGCAAATCTTTTCT
65 TAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
3215887 TTTCCCTATTTTCCTTAAAATCAAAATTCATTCCTTTAATAAGACAAGCATCGATTCTCGTAACA
130 TTGCCCTATTTT-CTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * ** ** *
3215952 ATCTCCATTCTTTTGAAGATTAAGAACAAAAAACGCATTCCCTTCATTAGGATACATGACATTGA
194 GTCTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
** *
3216017 TGCTTTGGTGTCAAAAGAAAAGCTTTT-TTCTCCACCATTTTTGATAGAATCAAAGTTTGTCCCT
259 TGCTTTGGTGTCGCAAGAAAAGCTTTTATT-TCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* *
3216081 TAAATAAGACAAACATGAATAGTTATACTAATCCCCATAT-TTTTCAGGATTAGGCACCATAAAC
323 TAAATAAGACAAACATGAATACTCATACTAATCCCCAT-TCTTTTCAGGATTAGGCACCATAAAC
* *** * * * * ** *
3216145 ATAGTTTTCTCATTAGGATACGCAATATTGATGTTTTGGTTTTGCATGAAAGGTATTTTTTCCAT
387 ATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTTACCCAC
*
3216210 CAATTTTTGTAAAGTCTAAATGT-G
451 CAATTTTTGTAAAGTCTAAGT-TCG
* ** *
3216234 TGCCTCGAAT-AGGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCAAGATTAGGCATTA
1 TGCCTCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTA
* * * * *
3216298 TAAGCACATTCTGCTTATTTGGATAAATG--ATTGATGATTTTCTTTTGCATAGAAATCTTTTCT
65 TAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * *
3216361 TTGCCCCATTTTCTTAAAATCAAAGTTCATCCCTT-TAT-A-ACAAGCATCGATTCGT-GTAACA
130 TTGCCCTATTTTCTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTC-TCGTAACA
* * *
3216422 GTCTCCATTATTTTCAAGATTAGGATCCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
194 GTCTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * *
3216487 AGCTTTGGTGTTGCAAGCAAAGCTTTTATTTCTACCGTTTTTGACAAAATCAAAGTTTGTCTCTT
259 TGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * *
3216552 AACTCAGACAAACATGAATAATCATACTATTCCCCATTCTTTTTAGGATTAGGCACCATAAACAT
324 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * **
3216617 AGTTTTCTTATTGGGATACATGATATTGATGCTTTGGTTTCATAAGAAAGGCTATTTACCCACCA
389 AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCT-TTTACCCACCA
*
3216682 ATTTTTGTAAAGTCCAAGTTCG
453 ATTTTTGTAAAGTCTAAGTTCG
* * * * * *
3216704 TGCCTCAAATGAGACAAATAAGGATTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCGCTAT
1 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTAT
* * * ** *
3216769 AAAAACATTC-TCTTCATAAGGATAAAAGATATTGACAATTTGCTTTTGCATGGAAATCTTTTCT
66 AAACACATTCTTC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
3216833 TTGCCTTATTTTCCTAACATTAAAGTT-ATTCCTTAAATAAGACAAGCATCGATTCTCATAACAG
130 TTGCCCTATTTTCTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * * *
3216897 TCTCAATTATTTTTAGGATTGGGAACCTAAAACATATTCCCTTCATTAGGATATATGACATTGAT
195 TCTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * *
3216962 GCTTTAGTGTTGCAAGAAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAAGTTGGTCTCTTA
260 GCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * * * * *
3217027 AATAAGAGAAACGTGAAAAGTCATAATAATCACCATTCTTTTCAAGATTAGGCACCATTAACATA
325 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
3217092 GTCTTCTCTTTAGGATACGA-GATATTGATGTTTTAGTTTCGCAATAAAGGCATTTTTCCCACCA
390 GTCTTCTCATTAGGATAC-ATGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTACCCACCA
3217156 ATTTTTGTAAAGTCTAAGTTCG
453 ATTTTTGTAAAGTCTAAGTTCG
* * **
3217178 TAG-CTCAAATGAGACAAATATGGATTCTAGAAATGATCTTCATTCATTTTCTGATTAGGCACTA
1 T-GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTA
* * * *
3217242 TAAACACATT-TTCCTCATTAGGATAAATTATATTAACGATTTTCTTTTGCATGGAAATATTTTC
65 TAAACACATTCTT-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
* * *
3217306 TTTGCCCTATTTTCATAAAATCAAAGTTCATAT-CTTAAATAAGA-AAGGCTTCGATTCTCATAA
129 TTTGCCCTATTTTCTTAAAATCAAAGTTCAT-TCCTTAAATAAGACAA-GCATCGATTCTCGTAA
* * * *
3217369 TAGTCTCCCTTATTTTTAAGATTGGGAACCAAAAACACATTCCCTTCCTTAGGATACATGACATT
192 CAGTCTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* *
3217434 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
257 GATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
* * * * * * *
3217499 TTAAATAAAATAAACATTAATACTCAAACTAATCCCCAGTCTTTTTAGGATTAGGCACCATTAAC
322 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * * * *
3217564 GTAGTCTTCTCATAACGATACGA-GAGATTAATGCTTTGGTTTGGCAAGAAAGGCTTTCTTCCCG
387 ATAGTCTTCTCATTAGGATAC-ATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TACCCA
* *
3217628 CTAATTTTCGTAAAGTCTAAGTTCG
450 CCAATTTTTGTAAAGTCTAAGTTCG
* * * * * *
3217653 TGCATCAAATGAGCCAAACCTGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTGT
1 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTAT
* * * * *
3217718 AAAGACATTCTTTTCATTAGGATAACTTATATTGATAATTTT-TTTTGCATGGAAATCTTTTCTT
66 AAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * * *
3217782 TGCCCTATTTTCATTAAAATGATAGTTCATCCCTTAAATAAGACAAGCAACGATTGTCGCAACTG
131 TGCCCTATTTTC-TTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * * *
3217847 TCTCCATTATTTTTATGATTGGGATCCTAAAACACATTCCTTTCATTAGGATACATAACATTGAT
195 TCTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
3217912 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTAGTTTTGATAGAATCTAAGTTTGTCTCTTA
260 GCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
3217977 AATAAGACAAACATGAATAGTCATACTAAT-CCCATTCTTTTCATGATTAGGCACCAAAAATATA
325 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
** * ** * * ***
3218041 GTCTTCTCATTAGGATATGTGATATTGATG-TTCTAGTTTCATATGAAAAGCATTTTTTTCACCA
390 GTCTTCTCATTAGGATACATGATATTGATGCTT-TGGTTTCGCAAGAAAGGC-TTTTACCCACCA
3218105 ATTTTTGTAAAGTCTATA-TTCG
453 ATTTTTGTAAAGTCTA-AGTTCG
3218127 TGCCT
1 TGCCT
3218132 GTAGACACCT
Statistics
Matches: 2403, Mismatches: 388, Indels: 101
0.83 0.13 0.03
Matches are distributed among these distances:
469 120 0.05
470 535 0.22
471 196 0.08
472 59 0.02
473 31 0.01
474 606 0.25
475 754 0.31
476 101 0.04
477 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (474 bp):
TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTAT
AAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCTATTTTCTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
CTCCATTATTTTTAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTACCCACCAATT
TTTGTAAAGTCTAAGTTCG
Found at i:3218467 original size:12 final size:12
Alignment explanation
Indices: 3218450--3218478 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
3218440 ATACAAACGG
3218450 TACATGTATCGA
1 TACATGTATCGA
3218462 TACATGTATCGA
1 TACATGTATCGA
3218474 TACAT
1 TACAT
3218479 AAGTTTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (12 bp):
TACATGTATCGA
Found at i:3222674 original size:20 final size:19
Alignment explanation
Indices: 3222637--3222678 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
3222627 TAAACCTTGA
*
3222637 TCATGCATTTTTACCATGCT
1 TCATGCATTTATACCATG-T
*
3222657 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
3222676 TCA
1 TCA
3222679 GCACCTCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (19 bp):
TCATGCATTTATACCATGT
Found at i:3228741 original size:14 final size:14
Alignment explanation
Indices: 3228698--3228744 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
3228688 AGTCAAAAGT
*
3228698 AAAAACACATAAA-
1 AAAAACACAAAAAC
3228711 AAAAACAACAAAAAC
1 AAAAAC-ACAAAAAC
3228726 AAAAACA-AAAACAC
1 AAAAACACAAAA-AC
3228740 AAAAA
1 AAAAA
3228745 AATAGTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 10 0.33
14 14 0.47
15 6 0.20
ACGTcount: A:0.81, C:0.17, G:0.00, T:0.02
Consensus pattern (14 bp):
AAAAACACAAAAAC
Found at i:3230131 original size:34 final size:34
Alignment explanation
Indices: 3230020--3230526 Score: 344
Period size: 34 Copynumber: 15.5 Consensus size: 34
3230010 AAATCTCTTC
* *
3230020 TTAAAGTCCATGACTTAGTGGCATC--TTT-TCT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* * *
3230051 TCAAAGTCCACGACTCAATGGCGTC--TTT-TCT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* *
3230082 TCAAAGTCCATGACTCAGTGGCATCTTTTTCTCT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* *
3230116 TCAAATTCCACGACTCAGTGGCATCTTTTT-TCT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* *
3230149 TCAAAGTCCACGACTCAGTGGCATCCTTTT-T-T
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
*
3230181 TCAAAGTCCAC-ACCTCAGTGGCATCTTTTTC-CT
1 TTAAAGTCCACGA-CTCAGTGGCATCTTTTTCTCT
* * * *
3230214 TTTAAGTCCACAACTCCGTGGCA-CTCTTTTCCCT
1 TTAAAGTCCACGACTCAGTGGCATCT-TTTTCTCT
* * *
3230248 TTTAAGTCCACAACTCCGTGGCACTCTTTTTC-CT
1 TTAAAGTCCACGACTCAGTGGCA-TCTTTTTCTCT
* * *
3230282 TTTAAGTCCACAACTCCGTGGCATCTTTTTC-CT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* * * * *
3230315 TTTAAGTCCACAACTCCGTGGCACCTTTTTCTTT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* * *
3230349 TTAAAGCCCACAACTCTGTGGCACTCTTTTTC-CT
1 TTAAAGTCCACGACTCAGTGGCA-TCTTTTTCTCT
* *
3230383 TTTAAGTCCACGACTCCGTGGCA-C-----C-CT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* ** * * *
3230410 TTTAAGTCCATAACCCCGTGACATCTTTTTC-CT
1 TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
* * * *
3230443 TTTAAGTCCACCACTCCA-TGGCACCTTTTTCTTT
1 TTAAAGTCCACGACT-CAGTGGCATCTTTTTCTCT
* ** *
3230477 TTAAAGCCCATAACTCCGTGGCACTCTTTTTC-CT
1 TTAAAGTCCACGACTCAGTGGCA-TCTTTTTCTCT
* * *
3230511 TTTAAGTTCACAACTC
1 TTAAAGTCCACGACTC
3230527 CATGGCACCC
Statistics
Matches: 404, Mismatches: 49, Indels: 43
0.81 0.10 0.09
Matches are distributed among these distances:
27 22 0.05
28 1 0.00
31 49 0.12
32 31 0.08
33 126 0.31
34 154 0.38
35 19 0.05
36 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (34 bp):
TTAAAGTCCACGACTCAGTGGCATCTTTTTCTCT
Found at i:3230168 original size:67 final size:67
Alignment explanation
Indices: 3230020--3230405 Score: 344
Period size: 67 Copynumber: 5.9 Consensus size: 67
3230010 AAATCTCTTC
** * * *
3230020 TTAAAGTCCATGACTTAGTGGCATC--TTT-TCTTCAAAGTCCACGACTCAATGGCGTC--TTTT
1 TTAAAGTCCACAACTCAGTGGCATCTTTTTCTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTT
3230080 CT
66 CT
* ** *
3230082 TCAAAGTCCATGACTCAGTGGCATCTTTTTCTCTTCAAATTCCACGACTCAGTGGCATCTTTTTT
1 TTAAAGTCCACAACTCAGTGGCATCTTTTTCTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTT
3230147 CT
66 CT
* * *
3230149 TCAAAGTCCACGACTCAGTGGCATCCTTTT-T-TTCAAAGTCCAC-ACCTCAGTGGCATCTTTTT
1 TTAAAGTCCACAACTCAGTGGCATCTTTTTCTCTTCAAAGTCCACGA-CTCAGTGGCATCTTTTT
*
3230211 CCT
65 TCT
* * * ** * *
3230214 TTTAAGTCCACAACTCCGTGGCA-CTCTTTTCCCTTTTAAGTCCACAACTCCGTGGCACTCTTTT
1 TTAAAGTCCACAACTCAGTGGCATCT-TTTTCTCTTCAAAGTCCACGACTCAGTGGCA-TCTTTT
*
3230278 TCCT
64 TTCT
* * ** * * *
3230282 TTTAAGTCCACAACTCCGTGGCATCTTTTTC-CTTTTAAGTCCACAACTCCGTGGCACCTTTTTC
1 TTAAAGTCCACAACTCAGTGGCATCTTTTTCTCTTCAAAGTCCACGACTCAGTGGCATCTTTTT-
*
3230346 TTT
65 TCT
* * ** *
3230349 TTAAAGCCCACAACTCTGTGGCACTCTTTTTC-CTTTTAAGTCCACGACTCCGTGGCA
1 TTAAAGTCCACAACTCAGTGGCA-TCTTTTTCTCTTCAAAGTCCACGACTCAGTGGCA
3230406 CCCTTTTAAG
Statistics
Matches: 285, Mismatches: 25, Indels: 22
0.86 0.08 0.07
Matches are distributed among these distances:
62 23 0.08
64 5 0.02
65 78 0.27
66 7 0.02
67 99 0.35
68 71 0.25
69 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.14, T:0.37
Consensus pattern (67 bp):
TTAAAGTCCACAACTCAGTGGCATCTTTTTCTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTT
CT
Found at i:3230439 original size:27 final size:27
Alignment explanation
Indices: 3230380--3230432 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
3230370 CACTCTTTTT
* * *
3230380 CCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGTCCACAACCCCGTGACAC
*
3230407 CCTTTTAAGTCCATAACCCCGTGACA
1 CCTTTTAAGTCCACAACCCCGTGACA
3230433 TCTTTTTCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.36, G:0.15, T:0.26
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACCCCGTGACAC
Found at i:3230449 original size:33 final size:33
Alignment explanation
Indices: 3230085--3230683 Score: 519
Period size: 34 Copynumber: 18.3 Consensus size: 33
3230075 CTTTTCTTCA
** * **
3230085 AAGTCCATGACTCAGTGGCATCTTTTTCTCTTCA
1 AAGTCCACAACTCCGTGGCATCTTTTTC-CTTTT
* * * * **
3230119 AATTCCACGACTCAGTGGCATCTTTTTTCTTCA
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* * **
3230152 AAGTCCACGACTCAGTGGCATCCTTTTT--TTCA
1 AAGTCCACAACTCCGTGGCAT-CTTTTTCCTTTT
* *
3230184 AAGTCCACACCTCAGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
*
3230217 AAGTCCACAACTCCGTGGCACTCTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTT
3230251 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTT
3230285 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* *
3230318 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* *
3230351 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTT
*
3230386 AAGTCCACGACTCCGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* * *
3230413 AAGTCCATAACCCCGTGACATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* * * *
3230446 AAGTCCACCACTCCATGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* *
3230479 AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTT
* *
3230514 AAGTTCACAACTCCATGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* * * *
3230541 AAGTCTACAACTCCGTGACACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
* * * *
3230574 AAGTCTACAACTCTGTGGCA-CCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
** * * *
3230606 AAGTCCATGACTCCATGACACCTTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCATCTTTTT-CCTTTT
* * * * *
3230640 AAGCCCACACCTCCGTGACACCCCTTTTT-CTTGT
1 AAGTCCACAACTCCGTGGCA--TCTTTTTCCTTTT
3230674 AAGTCCACAA
1 AAGTCCACAA
3230684 TTTCGAGGCA
Statistics
Matches: 474, Mismatches: 67, Indels: 48
0.80 0.11 0.08
Matches are distributed among these distances:
27 44 0.09
28 2 0.00
31 6 0.01
32 48 0.10
33 150 0.32
34 195 0.41
35 22 0.05
36 7 0.01
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.36
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
Found at i:3230467 original size:128 final size:128
Alignment explanation
Indices: 3230184--3230667 Score: 598
Period size: 128 Copynumber: 3.7 Consensus size: 128
3230174 CTTTTTTTCA
* * * * * *
3230184 AAGTCCACACCTCAGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTCCCTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTT
*
3230249 TTAAGTCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTCC
66 TTAAGTCCACAACTCCGTGGCAC-C-----CCTTTTAAGTCCACAACTCCGTGACATCTTTTTCC
3230314 TTTT
125 TTTT
*
3230318 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * *
3230383 TTTAAGTCCACGACTCCGTGGCA-CCCTTTTAAGTCCATAACCCCGTGACATCTTTTTCCTTTT
65 TTTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGACATCTTTTTCCTTTT
* * *
3230446 AAGTCCACCACTCCATGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
* * * * *
3230511 TTTAAGTTCACAACTCCATGGCA-CCCTTTTAAGTCTACAACTCCGTGACACCTTGTTCCTTTT
65 TTTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGACATCTTTTTCCTTTT
* * * ** * *
3230574 AAGTCTACAACTCTGTGGCACC-TTTTCTTTTTAAGTCCATGACTCCATGACAC-CTTTTTCCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTTT-CCT
* * *
3230637 TTTAAGCCCACACCTCCGTGACACCCCTTTT
65 TTTAAGTCCACAACTCCGTGGCACCCCTTTT
3230668 TCTTGTAAGT
Statistics
Matches: 311, Mismatches: 36, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
125 6 0.02
126 38 0.12
127 17 0.05
128 170 0.55
133 1 0.00
134 29 0.09
135 50 0.16
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (128 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTT
TTAAGTCCACAACTCCGTGGCACCCCTTTTAAGTCCACAACTCCGTGACATCTTTTTCCTTTT
Found at i:3230562 original size:27 final size:27
Alignment explanation
Indices: 3230508--3230562 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
3230498 CACTCTTTTT
*
3230508 CCTTTTAAGTTCACAACTCCATGGCAC
1 CCTTTTAAGTTCACAACTCCATGACAC
*
3230535 CCTTTTAAG-TCTACAACTCCGTGACAC
1 CCTTTTAAGTTC-ACAACTCCATGACAC
3230562 C
1 C
3230563 TTGTTCCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.25, C:0.35, G:0.11, T:0.29
Consensus pattern (27 bp):
CCTTTTAAGTTCACAACTCCATGACAC
Found at i:3230756 original size:39 final size:39
Alignment explanation
Indices: 3230704--3231035 Score: 207
Period size: 39 Copynumber: 7.8 Consensus size: 39
3230694 CATTTAAGAT
* *
3230704 CAATGTCGCTGGCCTTGAATCAGGACATTGGCACAAGCC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGCC
* * * *
3230743 CAATATCACTGGCCTTGAATTA-CAATATTGGCACCTTGTCTTTAAGAC
1 CAATATCGCTGGCCTTGAATCAGC-ACATTGGCA------C---AAGCC
*
3230791 CAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGCC
* *
3230830 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTATTTAAGAC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCA-C--------AAGCC
* * * *
3230878 CAATGTCGCTGGCCTTGAATCAGTACATTGCCATAAGCC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGCC
* * *
3230917 TAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGAC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCA------C---AAGCC
* * *
3230965 CAATGTCGTTGGCCTTGAATCAGCACATTGGCACAAGTC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGCC
* * *
3231004 TAATATCGCTAGCCTTGAATCAGCATATTGGC
1 CAATATCGCTGGCCTTGAATCAGCACATTGGC
3231036 GCCTTTGTCA
Statistics
Matches: 227, Mismatches: 37, Indels: 58
0.70 0.11 0.18
Matches are distributed among these distances:
39 125 0.55
40 1 0.00
42 2 0.01
45 1 0.00
48 97 0.43
49 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (39 bp):
CAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGCC
Found at i:3231081 original size:91 final size:90
Alignment explanation
Indices: 3230696--3231668 Score: 1035
Period size: 87 Copynumber: 10.5 Consensus size: 90
3230686 TCGAGGCACA
* * * *
3230696 TTTAAGATCAATGTCGCTGGCCTTGAATCAGGACATTGGCACAAGCCCAATATCACTGGCCTTGA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGA
*
3230761 ATTA-CAATATTGGCACCTTG---TC
66 ATCAGC-ATATTGGCACCTTGTCATC
*
3230783 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGA
3230848 ATCAGCATATTGGCACCTTGT-A--
66 ATCAGCATATTGGCACCTTGTCATC
* * *
3230870 TTTAAGACCAATGTCGCTGGCCTTGAATCAGTACATTGCCATAAG-CCTAATATCGCTGGCCTTG
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCC-AATATCGCTGGCCTTG
3230934 AATCAGCATATTGGCACCTTG---TC
65 AATCAGCATATTGGCACCTTGTCATC
* * *
3230957 TTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACAAGTCTAATATCGCTAGCCTTGA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGA
*
3231022 ATCAGCATATTGGCGCCTTTGTCATC
66 ATCAGCATATTGGCACC-TTGTCATC
*
3231048 TTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGA
*
3231113 ATCAGCATATTGGCGCCTTTGTCATC
66 ATCAGCATATTGGCACC-TTGTCATC
* *
3231139 TTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACAAATCCAATATCGCTGGCCTTGA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGA
3231204 ATCAGCATATTGGCACCTTTGTCATC
66 ATCAGCATATTGGCACC-TTGTCATC
* *
3231230 TTTAAGTCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG------CA-C---AAGTCCAATATCG
* *
3231295 CTGGCCTTGAATCAGCATATTGGCGCTTTTGTCATC
56 CTGGCCTTGAATCAGCATATTGGCAC-CTTGTCATC
* ** *
3231331 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCTGATATCA
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG------CA-C---AAGTCCAATATCG
* *
3231396 CCGGCCTTGAATCAGCATATTGGCACCTT-T-ATT
56 CTGGCCTTGAATCAGCATATTGGCACCTTGTCATC
* * * * *
3231429 TTTAAGACCAATGTCGTTGGCTTTGATTCAGCACATTGGCATCTTCATCTTTAAGACCAGTATCG
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG------CA-C---AAGTCCAATATCG
3231494 CTGGCCTTGAATCAGCATATTGGCA-C-TGTCATC
56 CTGGCCTTGAATCAGCATATTGGCACCTTGTCATC
* *
3231527 TTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCGATATCG
1 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG------CA-C---AAGTCCAATATCG
* *
3231592 TTGGCCTTGAATCAGCATATTGGCATCTT-TAACAT-
56 CTGGCCTTGAATCAGCATATTGGCACCTTGT--CATC
* **
3231627 TCTTAAGCCCAATGTCGCTGGCCTTGGCTCAGCACATTGGCA
1 T-TTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
3231669 TTCTTCTTCA
Statistics
Matches: 800, Mismatches: 57, Indels: 50
0.88 0.06 0.06
Matches are distributed among these distances:
86 2 0.00
87 231 0.29
88 5 0.01
91 216 0.27
95 2 0.00
96 1 0.00
97 4 0.00
98 166 0.21
99 3 0.00
100 4 0.00
101 166 0.21
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (90 bp):
TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGA
ATCAGCATATTGGCACCTTGTCATC
Found at i:3231297 original size:49 final size:49
Alignment explanation
Indices: 3231184--3231711 Score: 569
Period size: 49 Copynumber: 10.6 Consensus size: 49
3231174 TTGGCACAAA
* *
3231184 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAG
*
3231236 TCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * * *
3231285 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTTGTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC--CT-TCATCTTTAAG
*
3231337 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
** * * * * * *
3231386 TCTGATATCACCGGCCTTGAATCAGCATATTGGCACCTTTATTTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * * * *
3231435 ACCAATGTCGTTGGCTTTGATTCAGCACATTGGCATCTTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * * *
3231484 ACCAGTATCGCTGGCCTTGAATCAGCATATTGGCA-CTGTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCATCTTTAAG
* *
3231533 ACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * * * *
3231582 TCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAACAT-TCTTAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CATCT-TTAAG
* ** * *
3231634 CCCAATGTCGCTGGCCTTGGCTCAGCACATTGGCA--TTCTTCTTCAAG
1 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * *
3231681 TCTAATGTTGCTGGCCATGAATCAGCACATT
1 TCCAATGTCGCTGGCCTTGAATCAGCACATT
3231712 ATCATTCGTC
Statistics
Matches: 399, Mismatches: 67, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
47 31 0.08
48 3 0.01
49 243 0.61
50 7 0.02
51 2 0.01
52 113 0.28
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (49 bp):
TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
Found at i:3231364 original size:101 final size:100
Alignment explanation
Indices: 3231184--3231707 Score: 684
Period size: 101 Copynumber: 5.3 Consensus size: 100
3231174 TTGGCACAAA
*
3231184 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATGTCGCTG
1 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTTGTCATCTTTAAGACCAATGTCGCTG
*
3231249 GCCTTGAATTAGCACATTGGCACCTTCATCTTTAAG
65 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* *
3231285 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTTGTCATCTTTAAGTCCAATGTCGCTG
1 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC-TTTGTCATCTTTAAGACCAATGTCGCTG
*
3231350 GCCTTGAATCAGCACATTGGCATCTTCATCTTTAAG
65 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
** * * * * *
3231386 TCTGATATCACCGGCCTTGAATCAGCATATTGGCACCTT-T-ATTTTTAAGACCAATGTCGTTGG
1 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTGTCATCTTTAAGACCAATGTCGCTGG
* * *
3231449 CTTTGATTCAGCACATTGGCATCTTCATCTTTAAG
66 CCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * *
3231484 ACCAGTATCGCTGGCCTTGAATCAGCATATTGGCAC--TGTCATCTTTAAGACCAATGTTGCTGG
1 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTGTCATCTTTAAGACCAATGTCGCTGG
3231547 CCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
66 CCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * ** *
3231582 TCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAACAT-TCTTAAGCCCAATGTCGCT
1 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTTGTCATCT-TTAAGACCAATGTCGCT
** * *
3231646 GGCCTTGGCTCAGCACATTGGCA--TTCTTCTTCAAG
64 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
* * * *
3231681 TCTAATGTTGCTGGCCATGAATCAGCA
1 TCCAATATCGCTGGCCTTGAATCAGCA
3231708 CATTATCATT
Statistics
Matches: 372, Mismatches: 44, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
96 1 0.00
97 1 0.00
98 166 0.45
99 33 0.09
100 4 0.01
101 167 0.45
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (100 bp):
TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTGTCATCTTTAAGACCAATGTCGCTGG
CCTTGAATCAGCACATTGGCACCTTCATCTTTAAG
Found at i:3231482 original size:98 final size:99
Alignment explanation
Indices: 3231188--3231674 Score: 658
Period size: 98 Copynumber: 4.9 Consensus size: 99
3231178 CACAAATCCA
*
3231188 ATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCT
1 ATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-TCATCTTTAAGACCAATGTCGCTGGCCT
* * *
3231253 TGAATTAGCACATTGGCACCTTCATCTTTAAGTCCA
64 TGAATCAGCACATTGGCATCTTCATCTTTAAGTCCG
* * *
3231289 ATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTTGTCATCTTTAAGTCCAATGTCGCTGGCCT
1 ATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTT-TCATCTTTAAGACCAATGTCGCTGGCCT
*
3231354 TGAATCAGCACATTGGCATCTTCATCTTTAAGTCTG
64 TGAATCAGCACATTGGCATCTTCATCTTTAAGTCCG
* * * * *
3231390 ATATCACCGGCCTTGAATCAGCATATTGGCACCTTT-ATTTTTAAGACCAATGTCGTTGGCTTTG
1 ATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGACCAATGTCGCTGGCCTTG
* *
3231454 ATTCAGCACATTGGCATCTTCATCTTTAAGACC-
66 AATCAGCACATTGGCATCTTCATCTTTAAGTCCG
* *
3231487 AGTATCGCTGGCCTTGAATCAGCATATTGGCA-CTGTCATCTTTAAGACCAATGTTGCTGGCCTT
1 A-TATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGACCAATGTCGCTGGCCTT
*
3231551 GAATCAGCACATTGGCACCTTCATCTTTAAGTCCG
65 GAATCAGCACATTGGCATCTTCATCTTTAAGTCCG
* * *
3231586 ATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAACAT-TCTTAAGCCCAATGTCGCTGGCC
1 ATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT--CATCT-TTAAGACCAATGTCGCTGGCC
**
3231650 TTGGCTCAGCACATTGGCATTCTTC
63 TTGAATCAGCACATTGGCA-TCTTC
3231675 TTCAAGTCTA
Statistics
Matches: 343, Mismatches: 34, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
97 4 0.01
98 165 0.48
99 5 0.01
100 3 0.01
101 162 0.47
102 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (99 bp):
ATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGACCAATGTCGCTGGCCTTG
AATCAGCACATTGGCATCTTCATCTTTAAGTCCG
Found at i:3232608 original size:33 final size:33
Alignment explanation
Indices: 3232564--3232629 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3232554 GCCAAGGAAA
*
3232564 TGTATCGATACATT-ATTCAATGTATCGATACAT
1 TGTATCAATACATTGA-TCAATGTATCGATACAT
**
3232597 TGTATCAATACATTGATCTTTGTATCGATACAT
1 TGTATCAATACATTGATCAATGTATCGATACAT
3232630 CTGGGAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (33 bp):
TGTATCAATACATTGATCAATGTATCGATACAT
Found at i:3233583 original size:20 final size:19
Alignment explanation
Indices: 3233546--3233587 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
3233536 TAAACCTTGA
*
3233546 TCATGCATTTTTACCATGCT
1 TCATGCATTTATACCATG-T
*
3233566 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
3233585 TCA
1 TCA
3233588 GCACCTCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (19 bp):
TCATGCATTTATACCATGT
Found at i:3237070 original size:158 final size:158
Alignment explanation
Indices: 3236330--3238497 Score: 697
Period size: 158 Copynumber: 13.8 Consensus size: 158
3236320 TTTTCCTTAA
* * * *
3236330 AATCAAAGTTCAT-TCCTTAAATAAGACAAGCATCGA-TTCTCGTAACAATCTCC-ATTCTTTTC
1 AATCAAAGTTCGTCT-CTTAAATAAGACAAACAT-GAGTACTCGTAATAATC-CCAATTCTTTTC
* * * * * * * *
3236392 AAGATT-GGGAACAAAAAGCACATTCAT-TTCATTAGGATACATGACATTGATGCTTTGGTGTTA
63 AAGATTAGGCACCACAAA-CATAGTC-TCCTCATTAGGATACATGACATTGATGCTTTGGTTTTG
*
3236455 CAAGAAAAGCTTTTTTT-CACCG-TTTTGATAG
126 CAAGAAAAGCTTTTTTTCCACCGTTTTTGGTAG
** * * * * *
3236486 AATCAAAGTTTATCTCTTAAATAAGACAAACATAAGTAGTCATACTAATCCCCATTCTTTTC-AG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATGAGTACTCGTAATAATCCCAATTCTTTTCAAG
* * * * * *
3236550 AATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGCT-ATATTGATGTTTTGGTTTTACAA
66 -ATTAGGCACCACAAACATAGTCTCCTCATTAGGATAC-ATGACATTGATGCTTTGGTTTTGCAA
* * *
3236614 GAAATG-TATTTTTCCCACCAATTTTT-GTA-
129 GAAAAGCT-TTTTTTCCACC-GTTTTTGGTAG
* * * ** * * * * * **
3236643 AAGTCTAAGTGCG-CGCCTCGAATGAGACAAACATGAATTCTAGTAATGATTTTC-ATTCATTTT
1 AA-TCAAAGTTCGTC-TCTTAAATAAGACAAACATGAGTACTCGTAAT-AATCCCAATTC-TTTT
* ** ** * * * * * * * *
3236706 -GAGATTAGGCATTATGAGCACATTCTACTTATTAGGAT--A--A-A-TGAAG--TT-GATTTAC
62 CAAGATTAGGCACCACAAACATAGTCTCCTCATTAGGATACATGACATTGATGCTTTGGTTTTGC
* * ** *
3236761 ATAG-AAATCTTTTCTTTGC-CC-TATTTTCCATAA
127 A-AGAAAAGCTTTT-TTTCCACCGT-TTTT-GGTAG
* * * * * * * * * * *
3236794 AATCAAAGTTCATCCCTAAAATATGACAAGCTTCGA-TTCTTGTAACAATCTCC-ACTGTTTTCA
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACAT-GAGTACTCGTAATAATC-CCAATTCTTTTCA
* * * * * * **
3236857 AGATTGGGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACA
64 AGATTAGGCACCACAAACATAGTCTCC-TCATTAGGATACATGACATTGATGCTTTGGTTTTGCA
*
3236921 AGAAAAGCTTTTTTCTCCACCGTTTTTTGTAG
128 AGAAAAGCTTTTTT-TCCACCGTTTTTGGTAG
* * *
3236953 AATCAAAGTTTGTCTCTTAAAT-AGAAAAACATGAGTACTCGTACTAATCCCAATTCTTTTCAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATGAGTACTCGTAATAATCCCAATTCTTTTCAAG
* *
3237017 ACTAGGCACCACAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA
66 ATTAGGCACCACAAACATAGTCTCCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA
** * ** **
3237082 ACGGCTTCTTACCCACCAATTTTGGTA-
131 AAAGCTTTTTTTCCACCGTTTTTGGTAG
* * * * * * *
3237109 AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATG-G-ATTTGAGTAATGATCTTC-ATTCATT
1 AA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATGAGTA-CT-CGTAATAATC-CCAATTC-TT
* * * * * * * **
3237170 TT-GAGATTAGGCACTACAAGCATATTCTCCGCATTAGGATAAATGATC-TTGATGTTTTTTTTT
60 TTCAAGATTAGGCACCACAAACATAGTCTCCTCATTAGGATACATGA-CATTGATGCTTTGGTTT
* * * * * ** *
3237233 TGCATGGAAATCTTTTCTTT--GCCTTATTTTCCTAA
124 TGCAAGAAAAGCTTTT-TTTCCACCGT-TTTTGGTAG
* * * * * * * ***
3237268 AATCAATGTTCATCCCTTAAATAAGACAAACATCGA-TTCTCGTAATAGTCTCAATTATTTTTTG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACAT-GAGTACTCGTAATAATCCCAATTCTTTTCAA
* * * * * * * * * * *
3237332 GATTGGGAACAAAAAACACATTC-CCTTCATTA-GATTACGTGACTTTGATACTTTGGTGTCGCA
65 GATTAGGCACCACAAACATAGTCTCC-TCATTAGGA-TACATGACATTGATGCTTTGGTTTTGCA
3237395 AGAAAAGCATTTTTTTCCACCGTTTTTGGTAG
128 AGAAAAGC-TTTTTTTCCACCGTTTTTGGTAG
** * ** * * * *
3237427 AATTTAAGTTTGTCTCTTAAAT-TTACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATGAGTACTCGTAATAATCCCAATTCTTTTCAAG
* *
3237491 ATTAGGCACCACAGACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA
66 ATTAGGCACCACAAACATAGTCTCCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA
* ** **
3237556 AAGGC-TTTTACCCACCAATTTTGGTA-
131 AAAGCTTTTTTTCCACCGTTTTTGGTAG
* * * * * * * *
3237582 AAGTCTAAGTTCATGC-CTCAAATGAGACAAACATG-GATTCTAGTAATGATCTTC-ATTCATTT
1 AA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATGAG-TACTCGTAATAATC-CCAATTC-TTT
* * * * * * * * * * * *
3237644 T-GAGATTTGGCACTATAAGCATATTCTCTTCACTAGGATAAATGATATTGATGATTTTGTTTTG
61 TCAAGATTAGGCACCACAAACATAGTCTCCTCATTAGGATACATGACATTGATGCTTTGGTTTTG
** * * * ** *
3237708 CGTGGAAATCTTTTCTTTGC-CC-TATTTTCTTAA
126 CAAGAAAAGCTTTT-TTTCCACCGT-TTTTGGTAG
* * * * * * * * *
3237741 AATTAAAGTTCATCCCTT-TAT-A-ACAAGCATCGA-TTCTCGTAACAATCTCCACTAC-TTTCA
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACAT-GAGTACTCGTAATAATC-CCAATTCTTTTCA
* * * * * * * * * * * *
3237801 GGATTGGGAACCTA-AAACAGATTCTCTTCATTAAGATACAAGACATTAACGCATTGGTGTTGCA
64 AGATTAGGCACC-ACAAACATAGTCTCCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCA
*** * *
3237865 AGAAAAGCTTTTATTTCTGTCGGTTTTGATAG
128 AGAAAAGCTTTT-TTTCCACCGTTTTTGGTAG
* ** * * * * **
3237897 AATCGAAGTTTATCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCCTTTCTTTTCAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATGAGTACTCGTAATAATCCCAATTCTTTTCAAG
* * * *
3237962 ATTAGGCACCATAAACATCA-TCTTCTCATTAGGATACATGATATTGATG-TATT-GTTTCGCAA
66 ATTAGGCACCACAAACAT-AGTCTCCTCATTAGGATACATGACATTGATGCT-TTGGTTTTGCAA
* * *
3238024 GAAAGGCTTTTTTACCCACCAATTTTT-GTA-
129 GAAAAGCTTTTTT-TCCACC-GTTTTTGGTAG
* * * * * * * * ** *
3238054 AAGTCTAAGTTCG-CAACTCAAATGAGACAAACGTG-GCTACTAGTAATGATCTTCTTTTATTTT
1 AA-TCAAAGTTCGTC-TCTTAAATAAGACAAACATGAG-TACTCGTAATAATC-CCAATTCTTTT
** * * * * * * **
3238117 -GTGATTAGGCACTATAAATACATTCTCCTCATTAGGATA-ATTG-CTATTGATGATTTTCTTTT
62 CAAGATTAGGCACCACAAACATAGTCTCCTCATTAGGATACA-TGAC-ATTGATGCTTTGGTTTT
* * * **** ** *
3238179 GTC-TGAAAACCTTTTCTTTGCTTTATTTTTCTTAA
125 G-CAAGAAAAGCTTTT-TTTCCACCGTTTTTGGTAG
* * * * * *
3238214 AATCAAAGTTCAT-TCCTTAAATAAAACAAGCATCGA-TTCTCGTAACAATCTCC-ATTCTTTCC
1 AATCAAAGTTCGTCT-CTTAAATAAGACAAACAT-GAGTACTCGTAATAATC-CCAATTCTTTTC
* * * * * * * **
3238276 AAGATT-GGGAACAAAAAGCACA-TTTCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
63 AAGATTAGGCACCACAAA-CATAGTCTC-CTCATTAGGATACATGACATTGATGCTTTGGTTTTG
* * *
3238339 CAAGAAAAGCTTTTTTTTCCATCATTTTTGATAG
126 CAAGAAAAGC-TTTTTTTCCACCGTTTTTGGTAG
* * * * * * *
3238373 AATCAAAGTTTGTATCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATGAGTACTCGTAATAATCCCAATTCTTTTCAAG
* * * *
3238438 ATTTGGCACCATAAACATAGTC-CTCTCATTAGGATACACGATATTGATGCTTTGGTTTTG
66 ATTAGGCACCACAAACATAGTCTC-CTCATTAGGATACATGACATTGATGCTTTGGTTTTG
3238498 TAGGAAAGGT
Statistics
Matches: 1449, Mismatches: 436, Indels: 251
0.68 0.20 0.12
Matches are distributed among these distances:
147 1 0.00
148 4 0.00
149 21 0.01
150 67 0.05
151 5 0.00
152 5 0.00
153 1 0.00
154 5 0.00
155 86 0.06
156 161 0.11
157 155 0.11
158 555 0.38
159 350 0.24
160 32 0.02
161 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
AATCAAAGTTCGTCTCTTAAATAAGACAAACATGAGTACTCGTAATAATCCCAATTCTTTTCAAG
ATTAGGCACCACAAACATAGTCTCCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGA
AAAGCTTTTTTTCCACCGTTTTTGGTAG
Found at i:3238418 original size:476 final size:475
Alignment explanation
Indices: 3236184--3238848 Score: 3300
Period size: 476 Copynumber: 5.6 Consensus size: 475
3236174 TTGCGATAGT
* * *
3236184 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTGTGATTAGGCATTATA
1 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATA
* * * * *
3236249 AACACATTCTCCTCATTAGCATAAATGATATTAATGATTTTCTTCTGCACGGAAATCTTTTCTTT
66 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* *
3236314 GCCTTATTTTCCTTAAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAAT
131 GCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAAT
**
3236379 CTCCATTCTTTTCAAGATTGGGAACAAAAAGCACATTCATTTCATTAGGATACATGACATTGATG
195 CTCCATTCTTTTCAAGATTGGGAACAAAAA-CACATTCCCTTCATTAGGATACATGACATTGATG
* ** *
3236444 CTTTGGTGTTACAAGAAAAGC-TTTTTTT-CA-CCGTTTTGATAGAATCAAAGTTTATCTCTTAA
259 CTTTGGTGTCACAAGAAAAGCTTTTTTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
*
3236506 ATAAGACAAACAT-AAGTAGTCATACTAATCCCCATTCTTTTC-AGAATTAGGCACCATAAACAT
324 ATAAGACAAACATGAA-TACTCATACTAATCCCCATTCTTTTCAAG-ATTAGGCACCATAAACAT
* * * *
3236569 AGTCTTCTCATTAGGATACGCT-ATATTGATGTTTTGGTTTTACAAGAAATG-TATTTTT-CCCA
387 AGTCTTCTCATTAGGATAC-ATGATATTGATGCTTTGGTTTTGCAAGAAAGGCT-TTTTTACCCA
*
3236631 CCAATTTTTGTAAAGTCTAAGTGCGC
450 CCAATTTTTGTAAAGTCTAAGTTCGC
* * * * *
3236657 GCCTCGAATGAGACAAACATGAATTCTAGTAATGATTTTCATTCATTTTGAGATTAGGCATTATG
1 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATA
* * * * *
3236722 AGCACATTCTACTTATTAGGATAAATGA-A--GTTGA------TTTACATAGAAATCTTTTCTTT
66 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * *
3236778 GCCCTATTTTCCATAAAATCAAAGTTCATCCCTAAAATATGACAAGCTTCGATTCTTGTAACAAT
131 GCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAAT
* *
3236843 CTCCACTGTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
195 CTCCATTCTTTTCAAGATTGGGAA-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * *
3236908 CTTTGGTGTCACAAGAAAAGCTTTTTTCTCCACCGTTTTTTG-TAGAATCAAAGTTTGTCTCTTA
259 CTTTGGTGTCACAAGAAAAGCTTTTTTTTCCATC-ATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * * *
3236972 AAT-AGAAAAACATGAGTACTCGTACTAATCCCAATTCTTTTCAAGACTAGGCACCACAAACATA
323 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATA
* * *
3237036 GTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAACGGC-TTCTTACCCACCA
388 GTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTACCCACCA
* *
3237100 ATTTTGGTAAAGTCTAAGTTCGT
453 ATTTTTGTAAAGTCTAAGTTCGC
*
3237123 GCCTCAAATGAGACAAACATGGATT-TGAGTAATGATCTTCATTCATTTTGAGATTAGGCACTAC
1 GCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGAGATTAGGCACTAT
* * * * *
3237187 AAGCATATTCTCCGCATTAGGATAAATGATCTTGATGTTTTTTTTTTGCATGGAAATCTTTTCTT
65 AAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * *
3237252 TGCCTTATTTTCCTAAAATCAATGTTCATCCCTTAAATAAGACAAACATCGATTCTCGTAATAGT
130 TGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAAT
* * *** * *
3237317 CTCAATTATTTTTTGGATTGGGAACAAAAAACACATTCCCTTCATTA-GATTACGTGACTTTGAT
195 CTCCATTCTTTTCAAGATTGGGAAC-AAAAACACATTCCCTTCATTAGGA-TACATGACATTGAT
* * * * * * **
3237381 ACTTTGGTGTCGCAAGAAAAGCATTTTTTTCCACCGTTTTTGGTAGAATTTAAGTTTGTCTCTTA
258 GCTTTGGTGTCACAAGAAAAGCTTTTTTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTA
** * *
3237446 AAT-TTACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAGACATA
323 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATA
*
3237510 GTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTTGCAAGAAAGGC--TTTTACCCACCA
388 GTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTACCCACCA
* **
3237573 ATTTTGGTAAAGTCTAAGTTCAT
453 ATTTTTGTAAAGTCTAAGTTCGC
*
3237596 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTTGGCACTATA
1 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATA
* * * * *
3237661 AGCATATTCTCTTCACTAGGATAAATGATATTGATGATTTTGTTTTGCGTGGAAATCTTTTCTTT
66 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* *
3237726 GCCCTATTTTCTTAAAATTAAAGTTCATCCCTT-TAT-A-ACAAGCATCGATTCTCGTAACAATC
131 GCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATC
* * * * * * * * *
3237788 TCCACTAC-TTTCAGGATTGGGAACCTAAAACAGATTCTCTTCATTAAGATACAAGACATTAACG
196 TCCA-TTCTTTTCAAGATTGGGAA-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* ** * ** ** * *
3237852 CATTGGTGTTGCAAGAAAAGCTTTTATTTCTGTCGGTTTTGATAGAATCGAAGTTTATCTCTTAA
259 CTTTGGTGTCACAAGAAAAGCTTTTTTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* *
3237917 ATAAGACAAACTTGAATACTCATACTAATCCCCTTTCTTTTCAAGATTAGGCACCATAAACATCA
324 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACAT-A
*
3237982 -TCTTCTCATTAGGATACATGATATTGATG-TATT-GTTTCGCAAGAAAGGCTTTTTTACCCACC
388 GTCTTCTCATTAGGATACATGATATTGATGCT-TTGGTTTTGCAAGAAAGGCTTTTTTACCCACC
3238044 AATTTTTGTAAAGTCTAAGTTCGC
452 AATTTTTGTAAAGTCTAAGTTCGC
** * * * * * *
3238068 AACTCAAATGAGACAAACGTGGCTACTAGTAATGATCTTCTTTTATTTTGTGATTAGGCACTATA
1 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATA
** * * * *
3238133 AATACATTCTCCTCATTAGGATAATTGCTATTGATGATTTTCTTTTGTC-TGAAAACCTTTTCTT
66 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG-CATGGAAATCTTTTCTT
** * *
3238197 TGCTTTATTTTTCTTAAAATCAAAGTTCATTCCTTAAATAAAACAAGCATCGATTCTCGTAACAA
130 TGCCCTA-TTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAA
* * *
3238262 TCTCCATTCTTTCCAAGATTGGGAACAAAAAGCACATTTCTTTCATTAGGATACATGACATTGAT
194 TCTCCATTCTTTTCAAGATTGGGAACAAAAA-CACATTCCCTTCATTAGGATACATGACATTGAT
*
3238327 GCTTTGGTGTCACAAGAAAAGCTTTTTTTTCCATCATTTTTGATAGAATCAAAGTTTGTATCTTA
258 GCTTTGGTGTCACAAGAAAAGCTTTTTTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
3238392 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTTGGCACCATAAACATA
323 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATA
* * * *
3238457 GTCCTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGTAGGAAAGG-TATTTTT-CCCACC
388 GTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCT-TTTTTACCCACC
* * *
3238520 AATTTTTTTAAAGTCTAAGTTTGT
452 AATTTTTGTAAAGTCTAAGTTCGC
* * *
3238544 GCCTCGAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCATTGTA
1 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATA
* * * * *
3238609 AGCACATACTGCTCATTAGGATAAATGACATTGATGATTTTCTTTTGCATAGAAATTTTTTCTTT
66 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* ** * * *
3238674 GCCCTATTTTCTAAAAATCAAAGTTCATCCCTT---TTTGATAAGCATCGATTCTCGTAATAGTC
131 GCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATC
* * * * * *
3238736 TCCATTGTTTTCAGGATTAGGATCCTAAAACACATTCCCATCATTAGGATACATGACATTGATGC
196 TCCATTCTTTTCAAGATTGGGA-ACAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * ** * *
3238801 TTTGGTGTCGCAAGAAAAGCTTTTATTTCTGTCATTTTTTATGGAATC
260 TTTGGTGTCACAAGAAAAGCTTTTTTTTCCATCATTTTTGATAGAATC
3238849 CTCATTCTTT
Statistics
Matches: 1887, Mismatches: 260, Indels: 91
0.84 0.12 0.04
Matches are distributed among these distances:
464 150 0.08
465 18 0.01
466 201 0.11
467 28 0.01
468 5 0.00
469 3 0.00
470 139 0.07
471 89 0.05
472 264 0.14
473 304 0.16
474 256 0.14
475 64 0.03
476 348 0.18
477 18 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGAGATTAGGCACTATA
AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
GCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATC
TCCATTCTTTTCAAGATTGGGAACAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGTCACAAGAAAAGCTTTTTTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
TTCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTACCCACCAATT
TTTGTAAAGTCTAAGTTCGC
Found at i:3243146 original size:7 final size:7
Alignment explanation
Indices: 3243134--3243159 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
3243124 TTTAAGCCAC
3243134 ATGTTTT
1 ATGTTTT
3243141 ATGTTTT
1 ATGTTTT
3243148 ATGTTTT
1 ATGTTTT
3243155 ATGTT
1 ATGTT
3243160 CTTGCAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (7 bp):
ATGTTTT
Found at i:3244121 original size:308 final size:310
Alignment explanation
Indices: 3243474--3244284 Score: 993
Period size: 308 Copynumber: 2.6 Consensus size: 310
3243464 ATGTTATTTA
* * * * * **
3243474 AGGGACAAACTTTGATTTTGTCAAAAATGATGGAAAGAAAAG-GTTTCCTTATGGTACCAAAGCA
1 AGGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTT-CTTGTGACACCAAAGCA
* * **** *
3243538 TCAATGTCATGTATCTTAGAGAAGGGAACACATTTTTGGTTCCCAATCTCGAAAAAAATGGAGAC
65 TCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGAC
* * * * ** * *
3243603 TATTACAAGAATCCATGTTTGTCTAATTTGGGGGATGAACTTTGATTTTAAGAAAAATGGGTTGA
130 TGTTACGAGAATCGATGTTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATGGGTT--
* * *
3243668 AGAAAAGCTTTTCTTATGATGTCAAAGCATCAATATCGTGTTTGTAGTGAGGAAAACATATTTAT
193 ---AAAGCTTTTCTTACGAAGTCAAAACATCAATATCGTGTTTGTAGTGA-GAAAACATATTTAT
*
3243733 AGTGCCTAATCGAGTGTAGATAGAGATGGTTATGACAACCCATTATTGTCTCCTTTG
254 AGTGCCTAATCGAGTGTAGATAGAGATGGTTATGACAACCCATGATTGTCTCCTTTG
** *
3243790 AGGGACGGACTTTGATCCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCAT
1 AGGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCAT
* **
3243855 CAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATAAAGACT
66 CAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACT
* *
3243920 GTTACGAGAATCGATGTTTGTCTTATTTATGTGATGAACTTTGATTTTAAGGAAAATGGG-T-CA
131 GTTACGAGAATCGATGTTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATGGGTTAAA
* *
3243983 -CTTTTCTTGCGAAGTCAAAACATCAATATTGTGTTTGTAGTGCA-AAGAACATATTTATAGTGC
196 GCTTTTCTTACGAAGTCAAAACATCAATATCGTGTTTGTAGTG-AGAA-AACATATTTATAGTGC
* * * *
3244046 CTAATTGAGTGTAGATGGAGATGGTTATGGCAACCCATGGTTGTCTCCTTTG
259 CTAATCGAGTGTAGATAGAGATGGTTATGACAACCCATGATTGTCTCCTTTG
* * * *
3244098 AGGGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
1 AGGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCAT
* * * * * * *
3244163 CGATGTCATGTATGCTAATGAAGGGAATGTGTTTTTGATTCCTAATCTTGAAAAGAATGGAGATT
66 CAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACT
** * * * *
3244228 GTTTTGGGAATTGATGCTTGTCTTATTTAAGTGATGAACTTTGATTTCAAGGAAAAT
131 GTTACGAGAATCGATGTTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAAT
3244285 AGGGCAAAGG
Statistics
Matches: 430, Mismatches: 62, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
307 2 0.00
308 264 0.61
309 2 0.00
315 1 0.00
316 158 0.37
317 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (310 bp):
AGGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCAT
CAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACT
GTTACGAGAATCGATGTTTGTCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATGGGTTAAA
GCTTTTCTTACGAAGTCAAAACATCAATATCGTGTTTGTAGTGAGAAAACATATTTATAGTGCCT
AATCGAGTGTAGATAGAGATGGTTATGACAACCCATGATTGTCTCCTTTG
Found at i:3246606 original size:23 final size:22
Alignment explanation
Indices: 3246572--3246616 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
3246562 CCACTAGACG
*
3246572 ATTTTTTCAAATTTTCTCTACA
1 ATTTTTCCAAATTTTCTCTACA
3246594 ATTTTTCCTAAATTTTCTCTACA
1 ATTTTTCC-AAATTTTCTCTACA
3246617 TTTCTCTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTTTCCAAATTTTCTCTACA
Found at i:3246619 original size:11 final size:11
Alignment explanation
Indices: 3246582--3246629 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
3246572 ATTTTTTCAA
3246582 ATTTTCTCTAC
1 ATTTTCTCTAC
*
3246593 AATTTT-TCCTAA
1 -ATTTTCT-CTAC
3246605 ATTTTCTCTAC
1 ATTTTCTCTAC
3246616 A-TTTCTCTAC
1 ATTTTCTCTAC
3246626 ATTT
1 ATTT
3246630 GCAATTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
10 10 0.32
11 12 0.39
12 9 0.29
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (11 bp):
ATTTTCTCTAC
Found at i:3247726 original size:26 final size:26
Alignment explanation
Indices: 3247696--3247756 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
3247686 AAATAATATT
3247696 GAGTCAAAACCAATGAAACCAATGTC
1 GAGTCAAAACCAATGAAACCAATGTC
3247722 GAGTCAAAACCAATGAAACCAATGTC
1 GAGTCAAAACCAATGAAACCAATGTC
3247748 GAGTCAAAA
1 GAGTCAAAA
3247757 TATAGCTAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.48, C:0.21, G:0.16, T:0.15
Consensus pattern (26 bp):
GAGTCAAAACCAATGAAACCAATGTC
Found at i:3248610 original size:46 final size:46
Alignment explanation
Indices: 3248557--3248648 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
3248547 CAAAATGAAT
3248557 GAAGATCATTACTAGAATCCATGTTTGTCTCATTCAAGGCACGAAC
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTCAAGGCACGAAC
*
3248603 GAAGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACGAAC
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTCAAGGCACGAAC
3248649 TTAGACTTTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (46 bp):
GAAGATCATTACTAGAATCCATGTTTGTCTCATTCAAGGCACGAAC
Found at i:3253855 original size:21 final size:20
Alignment explanation
Indices: 3253831--3253877 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
3253821 TTCTATAATT
*
3253831 TGTATCAATACAAATAGTGAA
1 TGTATCAATAC-AATAATGAA
* *
3253852 TGTATGAATACATTAATGAA
1 TGTATCAATACAATAATGAA
3253872 TGTATC
1 TGTATC
3253878 GATAAATGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.34
Consensus pattern (20 bp):
TGTATCAATACAATAATGAA
Found at i:3256218 original size:25 final size:27
Alignment explanation
Indices: 3256161--3256211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
3256151 TTACTATTCG
3256161 CTTTTCTGAGAGGATACTCCAACCCCA
1 CTTTTCTGAGAGGATACTCCAACCCCA
3256188 CTTTTC-GAGAGGATACT-CAACCCC
1 CTTTTCTGAGAGGATACTCCAACCCC
3256212 GTTTTTCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 7 0.29
26 11 0.46
27 6 0.25
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (27 bp):
CTTTTCTGAGAGGATACTCCAACCCCA
Found at i:3264463 original size:19 final size:19
Alignment explanation
Indices: 3264439--3264477 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
3264429 TAGAGATTTC
3264439 ATCATTAATGTAATCAAAG
1 ATCATTAATGTAATCAAAG
3264458 ATCATTAATGTAATCAAAG
1 ATCATTAATGTAATCAAAG
3264477 A
1 A
3264478 GTTGGGAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (19 bp):
ATCATTAATGTAATCAAAG
Found at i:3266051 original size:20 final size:19
Alignment explanation
Indices: 3266026--3266096 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
3266016 ACCCTGAAAA
3266026 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* * **
3266046 GTATCGGTACAGATTGCAT
1 GTATCGATACACATTAAAT
**
3266065 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
3266086 GTATCGATACA
1 GTATCGATACA
3266097 GGACATTGGC
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
19 4 0.10
20 33 0.85
21 2 0.05
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:3266211 original size:21 final size:21
Alignment explanation
Indices: 3266186--3266238 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
3266176 CTGTTCATCA
*
3266186 CGATACATCATCTTCATGTAT
1 CGATACATCACCTTCATGTAT
3266207 CGATACATCACCTTCATGTAT
1 CGATACATCACCTTCATGTAT
3266228 CGATACATCAC
1 CGATACATCAC
3266239 TATTCATAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (21 bp):
CGATACATCACCTTCATGTAT
Found at i:3266334 original size:13 final size:13
Alignment explanation
Indices: 3266316--3266354 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3266306 TCACTATTCA
3266316 TGTATCGATACAT
1 TGTATCGATACAT
*
3266329 TGTATCGATACAG
1 TGTATCGATACAT
3266342 TGTATCGATACAT
1 TGTATCGATACAT
3266355 CATAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3271358 original size:19 final size:19
Alignment explanation
Indices: 3271314--3271388 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
3271304 TTGCCAGTTT
**
3271314 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
3271334 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
3271353 CATGTATCGATATAATGAA
1 CATGTATCGATACAATGAA
3271372 CATGTATCGATACAATG
1 CATGTATCGATACAATG
3271389 TATCGATACA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 36 0.71
20 15 0.29
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:3271391 original size:13 final size:13
Alignment explanation
Indices: 3271373--3271399 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3271363 TATAATGAAC
3271373 ATGTATCGATACA
1 ATGTATCGATACA
3271386 ATGTATCGATACA
1 ATGTATCGATACA
3271399 A
1 A
3271400 AGCAAGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3271415 original size:33 final size:32
Alignment explanation
Indices: 3271354--3271418 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
3271344 TACAATGAAC
* *
3271354 ATGTATCGATATAATGAACATGTATCGATACA
1 ATGTATCGATACAAAGAACATGTATCGATACA
*
3271386 ATGTATCGATACAAAGCAAGATGTATCGATACA
1 ATGTATCGATACAAAG-AACATGTATCGATACA
3271419 TTCAAGGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (32 bp):
ATGTATCGATACAAAGAACATGTATCGATACA
Found at i:3277090 original size:13 final size:13
Alignment explanation
Indices: 3277072--3277097 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3277062 TACACAAAGT
3277072 ATGTATCGATACA
1 ATGTATCGATACA
3277085 ATGTATCGATACA
1 ATGTATCGATACA
3277098 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3277095 original size:32 final size:33
Alignment explanation
Indices: 3277054--3277117 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
3277044 TAGCCAAACT
**
3277054 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
3277086 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
3277118 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:3281194 original size:15 final size:15
Alignment explanation
Indices: 3281174--3281204 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3281164 TAAAAATGTC
*
3281174 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
3281189 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
3281204 C
1 C
3281205 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:3283302 original size:13 final size:13
Alignment explanation
Indices: 3283284--3283322 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3283274 ACATTTTTCT
3283284 TTGTATCGATACA
1 TTGTATCGATACA
3283297 TTGTATCGATACA
1 TTGTATCGATACA
*
3283310 CTGTATCGATACA
1 TTGTATCGATACA
3283323 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3283472 original size:20 final size:20
Alignment explanation
Indices: 3283431--3283476 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
3283421 AAATCTTTTG
3283431 CAAAATACTTGTTTTTCACAT
1 CAAAATACTTGTTTTT-ACAT
*
3283452 CAAATTACTTCGTTTTT-CAT
1 CAAAATACTT-GTTTTTACAT
3283472 CAAAA
1 CAAAA
3283477 CCAGCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 7 0.32
21 9 0.41
22 6 0.27
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (20 bp):
CAAAATACTTGTTTTTACAT
Found at i:3285176 original size:59 final size:60
Alignment explanation
Indices: 3285084--3285206 Score: 232
Period size: 59 Copynumber: 2.1 Consensus size: 60
3285074 GGGGAGAGAA
3285084 TAGATGTATGTATGTGCAAATAAATTTTTGATATGTGTGTAAATTACCTTAT-AAAGGGG
1 TAGATGTATGTATGTGCAAATAAATTTTTGATATGTGTGTAAATTACCTTATAAAAGGGG
3285143 TAGATGTATGTATGTGCAAATAAATTTTTGATATGTGTGTAAATTACCTTATAAAAGGGG
1 TAGATGTATGTATGTGCAAATAAATTTTTGATATGTGTGTAAATTACCTTATAAAAGGGG
3285203 -AGAT
1 TAGAT
3285207 TTTTTTAGTA
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
59 56 0.89
60 7 0.11
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (60 bp):
TAGATGTATGTATGTGCAAATAAATTTTTGATATGTGTGTAAATTACCTTATAAAAGGGG
Found at i:3285963 original size:13 final size:13
Alignment explanation
Indices: 3285945--3285970 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3285935 TACACAAAGT
3285945 ATGTATCGATACA
1 ATGTATCGATACA
3285958 ATGTATCGATACA
1 ATGTATCGATACA
3285971 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Done.