Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3883850
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 144036 characters in sequence are not A, C, G, or T
File 23 of 24
Found at i:3576273 original size:13 final size:13
Alignment explanation
Indices: 3576255--3576280 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3576245 CAATTTTTGG
3576255 TGTATCGATACAT
1 TGTATCGATACAT
3576268 TGTATCGATACAT
1 TGTATCGATACAT
3576281 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3576292 original size:32 final size:33
Alignment explanation
Indices: 3576235--3576298 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
3576225 TACAAGCCAA
**
3576235 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
3576268 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
3576299 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:3576305 original size:19 final size:18
Alignment explanation
Indices: 3576235--3576305 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
3576225 TACAAGCCAA
3576235 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
3576255 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
3576268 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
3576287 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
3576306 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:3583441 original size:51 final size:51
Alignment explanation
Indices: 3583364--3583481 Score: 191
Period size: 51 Copynumber: 2.3 Consensus size: 51
3583354 CGAAAATAAT
*
3583364 GGGGTTGGAGTATCCCCAATTATGAGAAACCAATATTTTAGAAAGAAAGTC
1 GGGGTTGGAGTATCCCCAATTATGAGAAACCAATAGTTTAGAAAGAAAGTC
* * * *
3583415 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATAGTTTAGAAATAAAGTC
1 GGGGTTGGAGTATCCCCAATTATGAGAAACCAATAGTTTAGAAAGAAAGTC
3583466 GGGGTTGGAGTATCCC
1 GGGGTTGGAGTATCCC
3583482 TTCGAAAATA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCAATTATGAGAAACCAATAGTTTAGAAAGAAAGTC
Found at i:3583516 original size:27 final size:28
Alignment explanation
Indices: 3583468--3583540 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
3583458 ATAAAGTCGG
3583468 GGTTGGAGTATCCCTTCG--AAAATAACGA
1 GGTTGGAGTATCCC--CGATAAAATAACGA
*
3583496 GG-TGGAGTATCCTCGATAAAATAACGA
1 GGTTGGAGTATCCCCGATAAAATAACGA
*
3583523 GGTTGGTGTATCCCCGAT
1 GGTTGGAGTATCCCCGAT
3583541 TATGAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
25 2 0.05
27 22 0.56
28 15 0.38
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGATAAAATAACGA
Found at i:3583585 original size:51 final size:52
Alignment explanation
Indices: 3583521--3583640 Score: 154
Period size: 52 Copynumber: 2.3 Consensus size: 52
3583511 ATAAAATAAC
* * **
3583521 GAGGTTGGTGTATCCCC-GATTATGAAAAAATGGTGTTTTGGAAATAAAATCA
1 GAGGTTGGAGTATCCCCAAATTATGAAAAAATGGTGTTTTAAAAATAAAA-CA
* * *
3583573 GA-GTTGGAGTATCCCCAAATTGTGAAAAATTGGTGTTTTAAAAATAAAACC
1 GAGGTTGGAGTATCCCCAAATTATGAAAAAATGGTGTTTTAAAAATAAAACA
3583624 GAGGTTGGAGTATCCCC
1 GAGGTTGGAGTATCCCC
3583641 TCAGAAATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 16 0.27
52 43 0.73
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (52 bp):
GAGGTTGGAGTATCCCCAAATTATGAAAAAATGGTGTTTTAAAAATAAAACA
Found at i:3586798 original size:61 final size:59
Alignment explanation
Indices: 3586703--3587337 Score: 664
Period size: 61 Copynumber: 10.8 Consensus size: 59
3586693 TGAAATGGGT
* * ** * *
3586703 CTGCTCTTTGGGGACT-AGAAGCTGCCACCAACTTGTATGGGCTTTGCAAGAATAAAGCATC
1 CTGCTCTTTGAGGACTGA-AAG-TGCCACCAACTTGTGTGGGCTTTAAAAGAA-AAGGCGTC
* * *
3586764 CTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGCGTAGGGCTTTAAAAGAAAAAGGCGTT
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGT-GGGCTTTAAAAG-AAAAGGCGTC
* * *
3586826 CTACTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGAGTC
1 CTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTC
3586887 CTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTC
1 CTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTC
** * *
3586948 CCACTCTTTGAGGACTAAAACGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTC
* * * *
3587009 CCGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTT----G-AAAGGCATC
1 CTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTC
* * *
3587063 CTCCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTC
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTC
* * *
3587118 CTGCTCTTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTC
1 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTC
* * * *
3587179 CCGCTCTTTGAGGACTGCAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTC
1 CTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTC
* *
3587233 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTT
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTC
* *
3587288 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
1 CTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
3587338 GTATCCTACT
Statistics
Matches: 506, Mismatches: 48, Indels: 42
0.85 0.08 0.07
Matches are distributed among these distances:
54 49 0.10
55 152 0.30
59 1 0.00
60 51 0.10
61 200 0.40
62 50 0.10
63 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (59 bp):
CTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTC
Found at i:3587108 original size:55 final size:54
Alignment explanation
Indices: 3586762--3587358 Score: 502
Period size: 55 Copynumber: 10.3 Consensus size: 54
3586752 GAATAAAGCA
* ** *
3586762 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGCGTAGGGCTTTAAAAGAAAAAGGCG
1 TCCTCCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGT-GGGCTTT----G--AAAGGCG
* * * *
3586824 TTCTACTCCTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGAG
1 TCCTCCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
*
3586885 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTCCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
*
3586946 TCC-CACTCTTTGAGGACT-AAAACGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTC-CTCTTTGAGGACTGAAAA--TGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
** * *
3587007 TCC-CGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCA
1 TCCTC-CTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
3587061 TCCTCCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTCCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
3587116 TCCTGCTCTTTAAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTG
1 TCCTCCTCTTTGAGGACTGAAAA--TGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* ** *
3587177 TCC-CGCTCTTTGAGGACTGCAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTC-CTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
3587231 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTCCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * **
3587286 TTCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTA
1 TCCTCCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
3587341 TCCTACTTTTTGAGGACT
1 TCCTCCTCTTTGAGGACT
3587359 AAAGGGTGAA
Statistics
Matches: 475, Mismatches: 41, Indels: 45
0.85 0.07 0.08
Matches are distributed among these distances:
53 4 0.01
54 45 0.09
55 174 0.37
60 50 0.11
61 165 0.35
62 37 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (54 bp):
TCCTCCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:3587185 original size:170 final size:169
Alignment explanation
Indices: 3586703--3587338 Score: 765
Period size: 170 Copynumber: 3.6 Consensus size: 169
3586693 TGAAATGGGT
* * ** * * *
3586703 CTGCTCTTTGGGGACTAGAAGCTGCCACCAACTTGTATGGGCTTTGCAAGAATAAAGCATCCTGC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-A-AAGGCGTCCTGC
* * * * ** *
3586768 TCTTTGAGGACTAGAAGGTGCCACCAACTTGCGTAGGGCTTTAAAAGAAAAAGGCGTTCTACTCC
60 TCTTTGAGGACTAAAAGGTGCCACCAACTTGTGT-GGGCTTTAAAAGGAAAAGGCGTCCCGCTCT
*
3586833 TTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGAGTC
124 TTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGA-TC
**
3586887 CTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCCA
1 CTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTG
* *
3586951 CTCTTTGAGGACTAAAACGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCCGCTCT
59 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCCGCTCT
*
3587016 TTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATC
124 TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-ATC
* * *
3587063 CTCCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTA
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
*
3587128 AGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCCGCTCTTTGAGGA
66 AGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCCGCTCTTTGAGGA
* *
3587193 CTGCAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTC
131 CTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-ATC
*
3587233 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTTCTGCTCTTTG
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
*
3587298 AGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTGAAAGG
66 AGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
3587339 TATCCTACTT
Statistics
Matches: 407, Mismatches: 39, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
170 209 0.51
171 1 0.00
172 4 0.01
176 44 0.11
177 7 0.02
182 25 0.06
183 37 0.09
184 76 0.19
185 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (169 bp):
CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
AGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCCGCTCTTTGAGGA
CTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGATC
Found at i:3588361 original size:13 final size:13
Alignment explanation
Indices: 3588343--3588367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3588333 CATAAAGTGT
3588343 TGTATCGATACAA
1 TGTATCGATACAA
3588356 TGTATCGATACA
1 TGTATCGATACA
3588368 CAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3588378 original size:32 final size:33
Alignment explanation
Indices: 3588323--3588386 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
3588313 TTCAACGATT
3588323 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
3588356 TGTATCGATACA-CAAGTGTTGTATCGATACA
1 TGTATCGATACATAAAGTGTTGTATCGATACA
3588387 TAAGTTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:3588380 original size:19 final size:19
Alignment explanation
Indices: 3588322--3588405 Score: 90
Period size: 19 Copynumber: 4.7 Consensus size: 19
3588312 TTTCAACGAT
*
3588322 TTGTATCGATACATAAAGTG
1 TTGTATCGATACA-CAAGTG
3588342 TTGTATCGAT--ACAA---
1 TTGTATCGATACACAAGTG
3588356 -TGTATCGATACACAAGTG
1 TTGTATCGATACACAAGTG
* *
3588374 TTGTATCGATACATAAGTT
1 TTGTATCGATACACAAGTG
3588393 TTGTATCGATACA
1 TTGTATCGATACA
3588406 ATGTAAGCTA
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
13 9 0.16
15 4 0.07
17 2 0.04
18 1 0.02
19 29 0.53
20 10 0.18
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACACAAGTG
Found at i:3588431 original size:52 final size:52
Alignment explanation
Indices: 3588323--3588439 Score: 130
Period size: 52 Copynumber: 2.2 Consensus size: 52
3588313 TTCAACGATT
* ****
3588323 TGTATCGATACATAAAGTGTTGTATCGATACAATGTATCGATACACAAGTGT
1 TGTATCGATACATAAAGTGTTGTATCGATACAATGTATAGATACACAAAAAA
* * *
3588375 TGTATCGATACAT-AAGTTTTGTATCGATACAATGTA-AGCTACTGCCAAAAAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAATGTATAGATAC--ACAAAAAA
3588427 TGTATCGATACAT
1 TGTATCGATACAT
3588440 TACTCAAATA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
50 4 0.07
51 22 0.40
52 29 0.53
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (52 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAATGTATAGATACACAAAAAA
Found at i:3588524 original size:52 final size:52
Alignment explanation
Indices: 3588481--3588609 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
3588471 CACTGATCTT
* *
3588481 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
* *
3588533 TGTATCGATACATTCAGGCAAATTTGCCAAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
3588585 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
3588610 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
Found at i:3594878 original size:19 final size:18
Alignment explanation
Indices: 3594854--3594951 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
3594844 TAGCTTACAT
3594854 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
3594873 TGTATCGATAC--A---A
1 TGTATCGATACAAACTTA
3594886 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
3594905 TGTATCGATAC--AC---
1 TGTATCGATACAAACTTA
3594918 TGTATCGATACAATACATTA
1 TGTATCGATACAA-AC-TTA
3594938 TGTATCGATACAAA
1 TGTATCGATACAAA
3594952 TCATTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 23 0.35
16 6 0.09
19 24 0.36
20 13 0.20
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:3594890 original size:13 final size:13
Alignment explanation
Indices: 3594872--3594931 Score: 57
Period size: 13 Copynumber: 4.2 Consensus size: 13
3594862 TACAAAACTT
3594872 ATGTATCGATACA
1 ATGTATCGATACA
3594885 ATGTATCGATACAACA
1 ATGTATCGAT---ACA
3594901 CTTATGTATCGATACA
1 ---ATGTATCGATACA
*
3594917 CTGTATCGATACA
1 ATGTATCGATACA
3594930 AT
1 AT
3594932 ACATTATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
13 23 0.59
16 6 0.15
19 10 0.26
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3594891 original size:32 final size:32
Alignment explanation
Indices: 3594849--3594950 Score: 159
Period size: 32 Copynumber: 3.2 Consensus size: 32
3594839 GGCAGTAGCT
*
3594849 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACAATGTATCGATACAAAACTTATGTATCGA
*
3594881 TACAATGTATCGATACAACACTTATGTATCGA
1 TACAATGTATCGATACAAAACTTATGTATCGA
* *
3594913 TACACTGTATCGATACAATACATTATGTATCGA
1 TACAATGTATCGATACAAAAC-TTATGTATCGA
3594946 TACAA
1 TACAA
3594951 ATCATTGAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (32 bp):
TACAATGTATCGATACAAAACTTATGTATCGA
Found at i:3594956 original size:20 final size:20
Alignment explanation
Indices: 3594885--3594950 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 20
3594875 TATCGATACA
*
3594885 ATGTATCGATACAACAC-TT
1 ATGTATCGATACAATACATT
3594904 ATGTATCGATAC---AC---
1 ATGTATCGATACAATACATT
3594918 -TGTATCGATACAATACATT
1 ATGTATCGATACAATACATT
3594937 ATGTATCGATACAA
1 ATGTATCGATACAA
3594951 ATCATTGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.28
16 4 0.10
19 12 0.30
20 13 0.32
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATACATT
Found at i:3595776 original size:49 final size:49
Alignment explanation
Indices: 3595657--3595779 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
3595647 ATATGCGGCT
* *
3595657 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
1 AGCGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCC
*
3595706 AGCGACATTGGACTTAAAGATGATGGTGCCAATGTGCTGATTCAAGGCC
1 AGCGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCC
3595755 AGCGACATTGGACTTAAAGATGAAG
1 AGCGACATTGGACTTAAAGATGAAG
3595780 ATGAGAAAAG
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.24
Consensus pattern (49 bp):
AGCGACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCC
Found at i:3596000 original size:49 final size:49
Alignment explanation
Indices: 3595799--3597291 Score: 1590
Period size: 49 Copynumber: 30.8 Consensus size: 49
3595789 GTGATAAAGA
* * * *
3595799 TGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA--AG---AAGG
* * * * * * * *
3595853 ATGTCAATGTGCTGATTCAAGGCCAACTACATTGAACTTAAAGATGGAAAATG
1 -TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA---AGAAGG
* **
3595906 TGCCAATATGCTGATTCAAAGCCAGCTCTATTGGACTT-----A-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * *
3595949 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
3595998 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-----A-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * * * *
3596041 TGCCAGTGTGCTGATTCAAGG-CAGCTACATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
*
3596089 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-----A-AAGC
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * * * *
3596132 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGACAAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA--A-GAAGG
*
3596184 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * * * ** *
3596233 TGACAATGTGCTGATTTAAGGCTAGCGGCATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA--A-GAAGG
*
3596285 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATA-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AGAAGG
*
3596334 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT---G--G-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * *
3596377 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * *
3596426 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGCCAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAG---AAGG
*
3596478 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * *
3596527 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA--A-GAAGG
* *
3596579 CGCCAATATGCGGATTCAAGGCCAGCGATATTGGACTTAAAGATA-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AGAAGG
* *
3596628 TGCTAATATGCTGATTCAAGGCCAGTGATATTGGACTT---G--G-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * *
3596671 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* *
3596720 TGCCAATATGCTGATTCAAGGCCAGCGATATTCGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* *
3596769 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT-----A-AAGT
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * *
3596812 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGACA-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA---GA-AGAAGG
*
3596864 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * *
3596913 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA--A-GAAGG
* *
3596965 CGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATA-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AGAAGG
* **
3597014 TGCTAATATAATGATTCAAGGCCAGCGATATTGGACTTAAAGACA-AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AGAAGG
* *
3597063 CGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * * * *
3597112 TGACAATGTGCTGATTCAAGGCCAGCTACATCGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
*
3597161 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATA-AAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-AGAAGG
3597210 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
* * * *
3597253 TGCCATTGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
3597292 GTAGGGTTGC
Statistics
Matches: 1227, Mismatches: 148, Indels: 137
0.81 0.10 0.09
Matches are distributed among these distances:
42 14 0.01
43 244 0.20
44 2 0.00
46 5 0.00
48 26 0.02
49 603 0.49
50 2 0.00
51 3 0.00
52 288 0.23
53 3 0.00
55 35 0.03
56 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAAGAAGG
Found at i:3596290 original size:101 final size:100
Alignment explanation
Indices: 3595786--3597247 Score: 1795
Period size: 101 Copynumber: 15.0 Consensus size: 100
3595776 GAAGATGAGA
* * * * *
3595786 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAA
1 AAAGATGA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G---A
* * * *
3595850 AGGATGTCAATGTGCTGATTCAAGGCCAACTACATTGAACTT
60 AGG-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * **
3595892 AAAGATGGAAAATGTGCCAATATGCTGATTCAAAGCCAGCTCTATTGGACTT----A--AAGGTG
1 AAAGAT-GAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
*
3595951 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
*
3595987 AAAGA--AGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
3596044 CAGTGTGCTGATTCAAGG-CAGCTACATTGGACTT
66 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
*
3596078 AAAGATG--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGCTGC
1 AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
3596135 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
66 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
*
3596170 AAAGATGACAAAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
1 AAAGATGA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
* * * *
3596235 ACAATGTGCTGATTTAAGGCTAGCGGCATTGGACTT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* *
3596271 AAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTG
1 AAAGATGA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
* * *
3596336 CCAATATGCTGATTCAAGGCTAGCGATATTGGACTT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * * *
3596372 ---G--G---AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
1 AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
3596429 CAATATGCTGATTCAAGGCCAGCTACATTGGACTT
66 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
*
3596464 AAAGATGCCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
1 AAAGATG-AAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
3596529 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
3596565 AAAGATGACAAAGGCGCCAATATGCGGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGGTG
1 AAAGATGA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
* * * *
3596630 CTAATATGCTGATTCAAGGCCAGTGATATTGGACTT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * * *
3596666 ---G--G---AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
1 AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
3596723 CAATATGCTGATTCAAGGCCAGCGATATTCGACTT
66 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
*
3596758 AAAGATG--AAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAG-T-----TGC
1 AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
3596815 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
66 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
*
3596850 AAAGGTGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
1 AAAGATGA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
3596915 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
3596951 AAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAAAGGTG
1 AAAGATGA-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTG
* * ** *
3597016 CTAATATAATGATTCAAGGCCAGCGATATTGGACTT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
3597052 AAAGA--CAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGA
1 AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
3597115 CAATGTGCTGATTCAAGGCCAGCTACATCGGACTT
66 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
3597150 AAAGA--AGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAAAGATGC
1 AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
3597213 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT
66 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
3597248 GGAGGTGCCA
Statistics
Matches: 1207, Mismatches: 110, Indels: 86
0.86 0.08 0.06
Matches are distributed among these distances:
91 87 0.07
92 288 0.24
95 128 0.11
96 7 0.01
97 2 0.00
98 213 0.18
99 1 0.00
101 439 0.36
103 1 0.00
106 4 0.00
107 35 0.03
108 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (100 bp):
AAAGATGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
Found at i:3596483 original size:294 final size:292
Alignment explanation
Indices: 3595847--3597291 Score: 1950
Period size: 294 Copynumber: 5.0 Consensus size: 292
3595837 AAAGATGAGA
* * * * * *
3595847 AAAAGGATGTCAATGTGCTGATTCAAGGCCAACTACATTGAACTTAAAGATGGAAAATGTGCCAA
1 AAAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GCAAAGGTGCCAA
* **
3595912 TATGCTGATTCAAAGCCAGCTCTATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGC
64 TATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGC
*
3595971 CAGCTACATTGGACTTAAAGA--A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
129 CAGCTACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* * * *
3596033 C-T-----TAAAGGTGCCAGTGTGCTGATTCAAGG-CAGCTACATTGGACTTAAAGATGAAGGTG
194 CTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTG
* * *
3596091 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----
253 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* * *
3596127 -AAAGCTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGACAAAAGTGCCAAT
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-CAAAGGTGCCAAT
* * *
3596191 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGACAATGTGCTGATTTAAGGCT
65 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCC
** *
3596256 AGCGGCATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
130 AGCTACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
3596321 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTGGAGGTGCCAATGT
195 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGT
3596386 GCTGATTCAAGGCCAGCTACATTGGACTTAAAG
260 GCTGATTCAAGGCCAGCTACATTGGACTTAAAG
3596419 AAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGCCAAAGGTGCCAA
1 AA-AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-CAAAGGTGCCAA
3596484 TATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGC
64 TATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGC
* * *
3596549 CAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCGGATTCAAGGCCAGCGATATTGGA
129 CAGCTACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
* *
3596614 CTTAAAGATAAAGGTGCTAATATGCTGATTCAAGGCCAGTGATATTGGACTTGGAGGTGCCAATG
194 CTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATG
3596679 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
259 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* * *
3596713 AAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTCGACTTAAAGATG--AAGGTGCCAAT
1 AA-AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGCAAAGGTGCCAAT
*
3596776 ATGCTGATTCAAGGCTAGCGATATTGGACTTAAAG-T-----TGCCAATGTGCTGATTCAAGGCC
65 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCC
*
3596835 AGCTACATTGGACTTAAAGGTGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
130 AGCTACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
3596900 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGG
195 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G----AGG
* * * * *
3596965 CGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
251 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* ** * * *
3597007 ATAAAGGTGCTAATATAATGATTCAAGGCCAGCGATATTGGACTTAAAGA--CAAAGGCGCCAAT
1 A-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGCAAAGGTGCCAAT
*
3597070 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGACAATGTGCTGATTCAAGGCC
65 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCC
* *
3597135 AGCTACATCGGACTTAAAGA--A-GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
130 AGCTACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
3597197 TTAAAGATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCATTGT
195 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGT
3597262 GCTGATTCAAGGCCAGCTACATTGGACTTA
260 GCTGATTCAAGGCCAGCTACATTGGACTTA
3597292 GTAGGGTTGC
Statistics
Matches: 1050, Mismatches: 74, Indels: 74
0.88 0.06 0.06
Matches are distributed among these distances:
277 1 0.00
278 80 0.08
279 4 0.00
282 1 0.00
284 42 0.04
285 130 0.12
286 1 0.00
287 39 0.04
288 76 0.07
289 1 0.00
290 2 0.00
291 46 0.04
292 1 0.00
293 26 0.02
294 470 0.45
295 2 0.00
297 87 0.08
298 1 0.00
300 40 0.04
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (292 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGCAAAGGTGCCAATA
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCA
GCTACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
TAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGTG
CTGATTCAAGGCCAGCTACATTGGACTTAAAG
Found at i:3597464 original size:65 final size:64
Alignment explanation
Indices: 3597296--3597518 Score: 349
Period size: 65 Copynumber: 3.4 Consensus size: 64
3597286 GACTTAGTAG
*
3597296 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGGTTGCCACCAACTTGTGTGGGCTTTAGAAGA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAG-ATGGTTGCCACCGACTTGTGTGGGCTTTAG-AGA
3597361 A
64 A
* * * *
3597362 TGTTCCCACCGACTTCTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAG-AGATGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA
3597427 GGTTGCCACCGACTTGTGTGGGCTTTAGAGATGGGTTGCCACCGACTTGTGTGGGCTTT-GAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTAGAGAT-GGTTGCCACCGACTTGTGTGGGCTTTAGAGAA
3597491 GGGTTGCCACCGACTTGTGTGGGCTTTA
1 -GGTTGCCACCGACTTGTGTGGGCTTTA
3597519 AAAAGGGTGA
Statistics
Matches: 145, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
64 8 0.06
65 82 0.57
66 53 0.37
67 2 0.01
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.30
Consensus pattern (64 bp):
GGTTGCCACCGACTTGTGTGGGCTTTAGAGATGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA
Found at i:3597525 original size:32 final size:33
Alignment explanation
Indices: 3597294--3597526 Score: 350
Period size: 33 Copynumber: 7.2 Consensus size: 33
3597284 TGGACTTAGT
3597294 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGA
* *
3597327 ATGGTTGCCACCAACTTGTGTGGGCTTTAGAAGA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGA
* * *
3597361 A-TGTTCCCACCGACTTCTGTGGGCTTTAGAAGA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGA
3597394 A-GGTTGCCACCGACTTGTGTGGGCTTTAGAGA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGA
3597426 A-GGTTGCCACCGACTTGTGTGGGCTTTAGAGA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGA
*
3597458 TGGGTTGCCACCGACTTGTGTGGGCTTT-GAGA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGA
*
3597490 AGGGTTGCCACCGACTTGTGTGGGCTTTA-AAA
1 AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGA
3597522 AGGGT
1 AGGGT
3597527 GAAAGGTGCC
Statistics
Matches: 185, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
32 73 0.39
33 108 0.58
34 4 0.02
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.29
Consensus pattern (33 bp):
AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGA
Found at i:3597674 original size:61 final size:63
Alignment explanation
Indices: 3597530--3598275 Score: 452
Period size: 65 Copynumber: 11.4 Consensus size: 63
3597520 AAAGGGTGAA
* * * *
3597530 AGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAG-GTGCCACGGAGTTATGGGCTTTGAAAAG
1 AGGTGCCACGGAGTTGTGGACTTAGAAGGAA-AAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
*
3597593 AAGGTGCCACGGAGTTGTGGACTTAGAAGGACAAAGAGTGCCACGGAGTTGTGGAC-TT-AAACG
1 -AGGTGCCACGGAGTTGTGGACTTAGAAGGA-AAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
* * *
3597656 -GGTGCGACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTT-AAAAGG
1 AGGTGCCACGGAGTTGTGGACTTAGAAGG-AAAAGAGTGCCACGGAGTTGTGGACTTTGAAAA--
3597719 G
63 G
* * * *
3597720 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AAGAAG-GTGCCACGGAGTCGTGGACTTAAG
1 ----AG-GTGCCACGGAGTTGTGGACTTAGAAGGAA-AAGAGTGCCACGGAGTTGTGGACTT-TG
3597782 AGGAACA-
59 A--AA-AG
* * *
3597789 AGGTGCCACGGAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGACAA
1 AGGTGCCACGGAGTTGTGGAC-TTAGAA-GG-AAAAGAGTGCCACGGAGTTGTGGACTTTGAAAA
3597854 G
63 G
* *
3597855 AAGGTGCCACAGAGTTGTGGACTTA-AGAGGAACAAG-GTGCCACTGGAGTTGCGGACTTT-AAA
1 -AGGTGCCACGGAGTTGTGGACTTAGA-AGGAA-AAGAGTGCCAC-GGAGTTGTGGACTTTGAAA
3597917 AGGG
62 A--G
** * * * *
3597921 AAAAAGAGTGCCATAGAGTTGTGGGCTTTGAA--AATAAG-GTGCCACGAAGTTGTGGACTTAGA
1 ----AG-GTGCCACGGAGTTGTGGACTTAGAAGGAA-AAGAGTGCCACGGAGTTGTGGACTTTG-
*
3597983 AAGGAAA
59 AA--AAG
* * * *
3597990 AGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAA-AGATGCCACAGAGTTGTGGGCTTTGAAA
1 AG-GTGCCACGGAGTTGTGGAC-TT-AGAAGGAAAAGAG-TGCCACGGAGTTGTGGACTTTGAAA
3598054 AG
62 AG
* * * ** *
3598056 AAGGTGCCACAGAGTTGTGGGCTTTAAAAAGGAAAATGA-TGCCACAAAGTTGTGGGCTTTGAAA
1 -AGGTGCCACGGAGTTGTGGAC-TT-AGAAGGAAAA-GAGTGCCACGGAGTTGTGGACTTTG-AA
*
3598120 AAA
61 AAG
* * * * * *
3598123 ATGTGCCACGGAGTCGTGGACTTTGAAAAGAAAA-AGGTGCCACGGAGTCGTGGAATTTGAGACA
1 AGGTGCCACGGAGTTGTGGACTTAG-AAGGAAAAGA-GTGCCACGGAGTTGTGGACTTTGA-A-A
3598187 AG
62 AG
** * * * *
3598189 A--TGCCACTAAGTCGTGGACTTAAAAGGAACAAAGAGTGCCACGAAGTTGTGGCCTTTGAAAAG
1 AGGTGCCACGGAGTTGTGGACTTAGAAGG-A-AAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
* **
3598252 AAGGTGCCACAGAGTCATGGACTT
1 -AGGTGCCACGGAGTTGTGGACTT
3598276 TAAGAAGGTA
Statistics
Matches: 549, Mismatches: 72, Indels: 120
0.74 0.10 0.16
Matches are distributed among these distances:
61 49 0.09
62 6 0.01
63 11 0.02
64 86 0.16
65 114 0.21
66 101 0.18
67 60 0.11
68 26 0.05
69 48 0.09
70 42 0.08
71 5 0.01
72 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (63 bp):
AGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG
Found at i:3597818 original size:100 final size:99
Alignment explanation
Indices: 3597562--3598280 Score: 729
Period size: 100 Copynumber: 7.3 Consensus size: 99
3597552 TAAAAGGAAC
* * * * * *
3597562 AAGGTGCCACGGAGTTATGGGCTT-TGA-AAAGAAGGTGCCACGGAGTTGTGGAC-TTAGAAGGA
1 AAGGTGCCACGGAGTTGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
* * *
3597624 CAAAGAGTGCCACGGAGTTGTGGAC-TT-AAACG
66 AAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* * * *
3597656 --GGTGCGACGGAGTTGTGGACTT-AGAAGGAAAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAG
1 AAGGTGCCACGGAGTTGTGGACTTAAG-AGGAACAAG-GTGCCACGGAGTTGTGGACTTTAAAA-
3597718 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
63 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
*
3597755 AAGGTGCCACGGAGTCGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGG
1 AAGGTGCCACGGAGTTGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAA-GG
*
3597820 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGACAAG
65 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* *
3597855 AAGGTGCCACAGAGTTGTGGACTTAAGAGGAACAAGGTGCCACTGGAGTTGCGGACTTTAAAAGG
1 AAGGTGCCACGGAGTTGTGGACTTAAGAGGAACAAGGTGCCAC-GGAGTTGTGGACTTTAAAA-G
** *
3597920 GAAAAAGAGTGCCATAGAGTTGTGGGCTTTGAAAAT
64 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* * *
3597956 AAGGTGCCACGAAGTTGTGGACTTAGAAAGGAA-AAGAGTGCCACGGAGTTGTGGGCTTTAAAAA
1 AAGGTGCCACGGAGTTGTGGACTTA-AGAGGAACAAG-GTGCCACGGAGTTGTGGACTTT-AAAA
*
3598020 GGAAAAAGA-TGCCACAGAGTTGTGGGCTTTGAAAAG
63 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* * * * ** * *
3598056 AAGGTGCCACAGAGTTGTGGGCTTTAAAAAGGAA-AATGATGCCACAAAGTTGTGGGCTTT-GAA
1 AAGGTGCCACGGAGTTGTGGAC-TT-AAGAGGAACAA-GGTGCCACGGAGTTGTGGACTTTAAAA
* * *
3598119 --AAAAA-TGTGCCACGGAGTCGTGGACTTTGAAAAG
63 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* * * * ** *
3598153 AAAAAGGTGCCACGGAGTCGTGGAATT-TGA-G-ACAAGATGCCACTAAGTCGTGGAC-TTAAAA
1 ---AAGGTGCCACGGAGTTGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAA
* *
3598214 GGAACAAAGAGTGCCACGAAGTTGTGGCCTTTGAAAAG
63 GGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
* **
3598252 AAGGTGCCACAGAGTCATGGACTTTAAGA
1 AAGGTGCCACGGAGTTGTGGAC-TTAAGA
3598281 AGGTATTTGA
Statistics
Matches: 535, Mismatches: 61, Indels: 54
0.82 0.09 0.08
Matches are distributed among these distances:
92 20 0.04
93 1 0.00
94 7 0.01
95 37 0.07
96 27 0.05
97 60 0.11
98 7 0.01
99 33 0.06
100 164 0.31
101 158 0.30
102 21 0.04
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (99 bp):
AAGGTGCCACGGAGTTGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
AAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
Found at i:3597929 original size:201 final size:198
Alignment explanation
Indices: 3597508--3598280 Score: 785
Period size: 201 Copynumber: 3.9 Consensus size: 198
3597498 CACCGACTTG
** * * ** *
3597508 TGTGGGCTTTAAAAAGGGTGAAAG-GTGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCAC
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AAGAAGGTGCCAC
** * * * * * *
3597572 GGAGTTATGGGCTT-TGA-AAAGAAGGTGCCACGGAGTTGTGGACTTAGAAGGACAAAGAGTGCC
63 GGAGTCGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCC
* * * *
3597635 ACGGAGTTGTGGAC-TT-AAACG--GGTGCGACGGAGTTGTGGAC-TT-AGAAGGAAAAAGAGTG
128 ACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTTGTGGACTTTAAG-AGG-AAAAG-GTG
3597694 CCACGAAGT
190 CCACGAAGT
3597703 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGA
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGA
3597768 GTCGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCA
66 GTCGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGAC-TTAAAA-GGAAAAAGAGTGCCA
*
3597833 CGGAGTTGTGGGCTTTGACAAGAAGGTGCCACAGAGTTGTGGAC-TTAAGAGGAACAAGGTGCCA
129 CGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTTGTGGACTTTAAGAGGAA-AAGGTGCCA
*
3597897 CTGGAGT
193 C-GAAGT
* * ** * *
3597904 TGCGGACTTTAAAAGGGAAAAAGAGTGCCATAGAGTTGTGGGCTTTGAAAATAAGGTGCCACGAA
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGA
* * *
3597969 GTTGTGGACTTAGAAAGGAA-AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGA-TGC
66 GTCGTGGACTTA-AGAGGAACAAG-GTGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAAGAGTGC
* * * *
3598032 CACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTTGTGGGCTTTAAAAAGGAAAATGATG
127 CACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTTGTGGACTTT-AAGAGGAAAA-GGTG
*
3598097 CCACAAAGT
190 CCACGAAGT
* * * *
3598106 TGTGGGCTTT-GAA---AAAAA-TGTGCCACGGAGTCGTGGACTTTGAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG---AAGGTGCCAC
* * * ** *
3598166 GGAGTCGTGGAATT-TGA-G-ACAAGATGCCACTAAGTCGTGGACTTAAAAGGAACAAAGAGTGC
63 GGAGTCGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA-AAAGAGTGC
* * **
3598228 CACGAAGTTGTGGCCTTTGAAAAGAAGGTGCCACAGAGTCATGGACTTTAAGA
127 CACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTTGTGGACTTTAAGA
3598281 AGGTATTTGA
Statistics
Matches: 491, Mismatches: 63, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
193 23 0.05
194 21 0.04
195 65 0.13
196 66 0.13
197 53 0.11
198 8 0.02
199 3 0.01
200 30 0.06
201 151 0.31
202 53 0.11
203 18 0.04
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (198 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGA
GTCGTGGACTTAAGAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACG
GAGTTGTGGGCTTTGAAAAGAAGGTGCCACAGAGTTGTGGACTTTAAGAGGAAAAGGTGCCACGA
AGT
Found at i:3598009 original size:166 final size:163
Alignment explanation
Indices: 3597788--3598230 Score: 482
Period size: 166 Copynumber: 2.7 Consensus size: 163
3597778 TAAGAGGAAC
3597788 AAGGTGCCACGGAGTTGTGGACTTTA-AAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAC
1 AAGGTGCCACGGAGTTGTGGAC-TTAGAAA-GG-AAAAGAGTGCCACGGAGTTGTGGGCTTTGA-
* *
3597852 AAGAAGGTGCCACAGAGTTGTGGACTTAAGAGGAACAAGGTGCCACTGGAGTTGCGGACTTTAAA
62 AAGAAGATGCCACAGAGTTGTGGACTTAAGAGGAACAAGGTGCCAC-AGAGTTGCGGACTTTAAA
* * * *
3597917 AGGGAAAAAGAGTGCCATAGAGTTGTGGGCTTTGAAAAT
126 AAGGAAAAAGA-TGCCACAAAGTTGTGGGCTTTGAAAAA
* *
3597956 AAGGTGCCACGAAGTTGTGGACTTAGAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAGGTGCCACGGAGTTGTGGACTTAGAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTT-GAAA-
* * * * * *
3598021 GAAAAAGATGCCACAGAGTTGTGGGCTT-TGA-AAAGAAGGTGCCACAGAGTTGTGGGCTTTAAA
64 G---AAGATGCCACAGAGTTGTGGACTTAAGAGGAACAAGGTGCCACAGAGTTGCGGACTTTAAA
*
3598084 AAGGAAAATGATGCCACAAAGTTGTGGGCTTTGAAAAA
126 AAGGAAAAAGATGCCACAAAGTTGTGGGCTTTGAAAAA
* * * * * ** * *
3598122 AATGTGCCACGGAGTCGTGGACTTTGAAAAGAAAA-AGGTGCCACGGAGTCGTGGAATTTGAGAC
1 AAGGTGCCACGGAGTTGTGGACTTAGAAAGGAAAAGA-GTGCCACGGAGTTGTGGGCTTTGAAAG
* *
3598186 AAGATGCCACTA-AGTCGTGGACTTAAAAGGAACAAAGAGTGCCAC
65 AAGATGCCAC-AGAGTTGTGGACTTAAGAGGAAC-AAG-GTGCCAC
3598231 GAAGTTGTGG
Statistics
Matches: 231, Mismatches: 32, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
161 20 0.09
162 2 0.01
163 2 0.01
164 3 0.01
165 10 0.04
166 103 0.45
167 31 0.13
168 36 0.16
169 2 0.01
170 22 0.10
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.21
Consensus pattern (163 bp):
AAGGTGCCACGGAGTTGTGGACTTAGAAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAGA
AGATGCCACAGAGTTGTGGACTTAAGAGGAACAAGGTGCCACAGAGTTGCGGACTTTAAAAAGGA
AAAAGATGCCACAAAGTTGTGGGCTTTGAAAAA
Found at i:3598156 original size:36 final size:34
Alignment explanation
Indices: 3597656--3598182 Score: 175
Period size: 31 Copynumber: 15.7 Consensus size: 34
3597646 GACTTAAACG
* * * * *
3597656 GGTGCGACGGAGTTGTGGACTTAG-AAGGAAAAA
1 GGTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
* * **
3597689 GAGTGCCACGAAGTTGTGGGCTTT-AAAAGGGAAAAA
1 G-GTGCCACGGAGTCGTGGAATTTGAAAA--GAAAAA
* **
3597725 GAGTGCCACGGAGTTGTGGGCTTTGAAAAG---AA
1 G-GTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
* * *
3597757 GGTGCCACGGAGTCGTGG-ACTT-AAGAGGAACAA
1 GGTGCCACGGAGTCGTGGAATTTGAA-AAGAAAAA
* *
3597790 GGTGCCACGGAGTTGTGGACTTT-AAAAGGGAAAAA
1 GGTGCCACGGAGTCGTGGAATTTGAAAA--GAAAAA
* ** *
3597825 GAGTGCCACGGAGTTGTGGGCTTTGACAAG---AA
1 G-GTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
* * * * *
3597857 GGTGCCACAGAGTTGTGG-ACTT-AAGAGGAACAA
1 GGTGCCACGGAGTCGTGGAATTTGAA-AAGAAAAA
* * *
3597890 GGTGCCACTGGAGTTGCGGACTTT-AAAAGGGAAAAA
1 GGTGCCAC-GGAGTCGTGGAATTTGAAAA--GAAAAA
** * ** *
3597926 GAGTGCCATAGAGTTGTGGGCTTTG--AA-AATAA
1 G-GTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
* * * * *
3597958 GGTGCCACGAAGTTGTGGACTTAG-AAAGGAAAA
1 GGTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
* ** *
3597991 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAA
1 G-GTGCCACGGAGTCGTGGAATTTGAAAA-GAAAAA
* * * **
3598027 GATGCCACAGAGTTGTGGGCTTTGAAAAG---AA
1 GGTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
* * ** * *
3598058 GGTGCCACAGAGTTGTGGGCTTTAAAAAGGAAAAT
1 GGTGCCACGGAGTCGTGGAATTTGAAAA-GAAAAA
* ** * **
3598093 GATGCCACAAAGTTGTGGGCTTTG--AA-AAAAA
1 GGTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
* *
3598124 TGTGCCACGGAGTCGTGGACTTTGAAAAGAAAAA
1 GGTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
3598158 GGTGCCACGGAGTCGTGGAATTTGA
1 GGTGCCACGGAGTCGTGGAATTTGA
3598183 GACAAGATGC
Statistics
Matches: 395, Mismatches: 63, Indels: 71
0.75 0.12 0.13
Matches are distributed among these distances:
29 3 0.01
30 8 0.02
31 100 0.25
32 14 0.04
33 39 0.10
34 81 0.21
35 63 0.16
36 74 0.19
37 13 0.03
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (34 bp):
GGTGCCACGGAGTCGTGGAATTTGAAAAGAAAAA
Found at i:3606609 original size:13 final size:13
Alignment explanation
Indices: 3606591--3606615 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3606581 CAAAGATCAG
3606591 TGTATCGATACAA
1 TGTATCGATACAA
3606604 TGTATCGATACA
1 TGTATCGATACA
3606616 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3606682 original size:19 final size:18
Alignment explanation
Indices: 3606658--3606755 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
3606648 TAGCTTACAT
3606658 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
3606677 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
3606690 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
3606709 TGTATCGATAC--AC---
1 TGTATCGATACAAACTTA
3606722 TGTATCGATACAATACTTTA
1 TGTATCGATACAA-AC-TTA
3606742 TGTATCGATACAAA
1 TGTATCGATACAAA
3606756 TCATTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 1 0.02
16 6 0.09
18 1 0.02
19 23 0.35
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:3606694 original size:32 final size:32
Alignment explanation
Indices: 3606653--3606753 Score: 166
Period size: 32 Copynumber: 3.1 Consensus size: 32
3606643 GGTAGTAGCT
3606653 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
*
3606685 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
* *
3606717 TACACTGTATCGATACAATACTTTATGTATCGA
1 TACATTGTATCGATACAAAAC-TTATGTATCGA
3606750 TACA
1 TACA
3606754 AATCATTGAA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 50 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCGA
Found at i:3606695 original size:13 final size:13
Alignment explanation
Indices: 3606677--3606733 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
3606667 ACAAAACTTA
3606677 TGTATCGATACAT
1 TGTATCGATACAT
3606690 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
*
3606708 ATGTATCGATACAC
1 -TGTATCGATACAT
3606722 TGTATCGATACA
1 TGTATCGATACA
3606734 ATACTTTATG
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 21 0.57
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3607597 original size:19 final size:17
Alignment explanation
Indices: 3607553--3607598 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 17
3607543 TTTTTCTCTC
*
3607553 TTTTTTTCTTTGTTTTG
1 TTTTTTTTTTTGTTTTG
3607570 TTTTTTTTTGTTGTTTTG
1 TTTTTTTTT-TTGTTTTG
3607588 TTTTTTTTTTT
1 TTTTTTTTTTT
3607599 AAAAAAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 10 0.37
18 17 0.63
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (17 bp):
TTTTTTTTTTTGTTTTG
Found at i:3622208 original size:52 final size:52
Alignment explanation
Indices: 3622130--3622257 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
3622120 CGAAATATGA
*
3622130 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
*
3622182 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
*
3622234 AAATTTGCCT-AATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
3622258 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 13 0.18
52 60 0.82
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
Found at i:3622270 original size:51 final size:52
Alignment explanation
Indices: 3622130--3622277 Score: 194
Period size: 52 Copynumber: 2.9 Consensus size: 52
3622120 CGAAATATGA
* * *
3622130 AAATTTACCTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGAATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGC
* ***
3622182 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGAATGTATCGATACATAAGATAGTGTATCGATACATCTGGGC
3622234 AAATTTGCCT-AATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGAATGTATCGATACATAAGAT-AGTGTATCGATACA
3622278 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
50 2 0.02
51 29 0.33
52 57 0.65
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGAATGTATCGATACATAAGATAGTGTATCGATACATCTGGGC
Found at i:3622284 original size:13 final size:13
Alignment explanation
Indices: 3622266--3622290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3622256 CAAAGATCAG
3622266 TGTATCGATACAA
1 TGTATCGATACAA
3622279 TGTATCGATACA
1 TGTATCGATACA
3622291 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3622370 original size:13 final size:13
Alignment explanation
Indices: 3622352--3622376 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3622342 ACAAAACTTA
3622352 TGTATCGATACAT
1 TGTATCGATACAT
3622365 TGTATCGATACA
1 TGTATCGATACA
3622377 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3622372 original size:32 final size:33
Alignment explanation
Indices: 3622331--3622396 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
3622321 AGTAGCTTAA
3622331 ATTGTATCGATACAAAAC-TTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
*
3622363 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
3622396 A
1 A
3622397 AATCGTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAAAACTTTATGTATCGATAC
Found at i:3623239 original size:67 final size:68
Alignment explanation
Indices: 3623117--3623243 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
3623107 ATTGGGTTTT
* * *
3623117 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
3623182 AGA
66 AGA
* * * *
3623185 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
3623244 GAAAAAGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:3623293 original size:55 final size:52
Alignment explanation
Indices: 3623193--3623530 Score: 240
Period size: 49 Copynumber: 6.9 Consensus size: 52
3623183 GAAAAGTGAT
* * * * * * **
3623193 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G-A
* *
3623247 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
3623300 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
3623343 AAAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGA-CG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
3623393 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
3623435 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
3623485 -TAGGTGCAAATATGCTGATTCAAGGCCAG-TGATATTGGACTTAAAG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCT-ACATTGAACTTAAAG
3623531 GTAGATGCCA
Statistics
Matches: 237, Mismatches: 28, Indels: 43
0.77 0.09 0.14
Matches are distributed among these distances:
43 75 0.32
44 2 0.01
46 1 0.00
48 2 0.01
49 77 0.32
51 1 0.00
52 32 0.14
53 6 0.03
54 5 0.02
55 36 0.15
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
Found at i:3623416 original size:49 final size:48
Alignment explanation
Indices: 3623256--3623530 Score: 311
Period size: 43 Copynumber: 5.8 Consensus size: 48
3623246 AAAAGGATGT
* *
3623256 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--G--AAGGTGC
*
3623308 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGC
* *
3623351 CAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGACGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-GAAGGTGC
* *
3623400 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGC
* *
3623443 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGTAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-GAAGGTGC
* *
3623492 AAATATGCTGATTCAAGGCCAG-TGATATTGGACTTAAAG
1 CAATATGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAG
3623531 GTAGATGCCA
Statistics
Matches: 193, Mismatches: 17, Indels: 29
0.81 0.07 0.12
Matches are distributed among these distances:
43 78 0.40
45 1 0.01
47 2 0.01
48 2 0.01
49 78 0.40
52 32 0.17
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (48 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGC
Found at i:3623431 original size:92 final size:92
Alignment explanation
Indices: 3623247--3623532 Score: 455
Period size: 92 Copynumber: 3.1 Consensus size: 92
3623237 AAGATGAGAA
* * *
3623247 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-CG--AAGGTGCCAAT
*
3623312 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
*
3623343 AAAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGACGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACGAAGGTGCCAATATGC
3623408 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
3623435 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGTAGGTGCAAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACGAAGGTGCCAATATGC
*
3623500 TGATTCAAGGCCAGTGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
3623527 AAAGGT
1 AAAGGT
3623533 AGATGCCACC
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
92 134 0.74
94 1 0.01
95 40 0.22
96 5 0.03
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGACGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:3623573 original size:33 final size:33
Alignment explanation
Indices: 3623536--3623860 Score: 435
Period size: 33 Copynumber: 9.9 Consensus size: 33
3623526 TAAAGGTAGA
* *
3623536 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGG-T
1 TGCCACCGACTTGTGTGGGCTTTAG-AGAAGGTT
* * * *
3623569 TGCCACAGACTTGTGTGGCCTTTAGAG-GGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
* *
3623601 TGCCACCAACTTGTGTGGGCTTTAGAGAGGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
*
3623634 T-CCACCGACTTGTGTGGGCTTTAGAAGAAAG-T
1 TGCCACCGACTTGTGTGGGCTTTAG-AGAAGGTT
3623666 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
**
3623699 TGCCACCGACTTGTGTGGGCTTTAGAGGCGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
*
3623732 TGCCACCGACTTGTGTGGGCTTTAGAGACGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
* * **
3623765 TGTCACCGACTTGTGTAGGCTTTAGAGGCGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
*
3623798 TGCCACTGACTTGTGTGGGCTTTAGAGAAGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
*
3623831 TACCACCGACTTGTGTGGGCTTTAGA-AAGG
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGG
3623861 GTGAAAGATG
Statistics
Matches: 261, Mismatches: 26, Indels: 11
0.88 0.09 0.04
Matches are distributed among these distances:
31 2 0.01
32 60 0.23
33 199 0.76
ACGTcount: A:0.18, C:0.19, G:0.33, T:0.30
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
Found at i:3623943 original size:36 final size:35
Alignment explanation
Indices: 3623864--3624511 Score: 561
Period size: 36 Copynumber: 19.8 Consensus size: 35
3623854 AGAAAGGGTG
*
3623864 AAAGA-TGCCACGAAGTTGTGGAC-TTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
3623896 CAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-GGAA
*
3623931 AAAGAGTGCCACGGAGTTGTGGAC-TTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
3623965 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
*
3624000 AAAG-GTGCCACGGAGTTGTGGAC-TTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
3624033 AAAGAGTGCCACAGAGTTGTGGGC-TTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
3624064 ---G-GTGCCACGGAGTTGTGGAC-TTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
3624094 AAAGAGTGCCACGGAGTTGTGGGC-TTAATA-G--
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
*
3624125 ---G-GTGCCACGGAGTTGTGGAC-TTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
3624155 AAAAAGTGCCACGGAGTTGTGGGC-TTAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
*
3624186 ---G-GTGCCACGGAGTTGTGGATTTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-GGAA
* *
3624218 AAAGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-GGAA
* *
3624254 AAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-GGAA
*
3624290 AAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGACTTT-AAAAGGAA
* * * * * *
3624323 -AAG-GTCCCACAGAATCGTAGACTTTGAAAGG--
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
*
3624354 -AAG-GTGCCACGGAGTCGTGGAC-TTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* * *
3624386 TAAG-GTGCCACGGGGTTGTGGACTTTAAAAGGGGA
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAA-GGAA
* *
3624421 AAAGAGTGCCACGGAATTGTGGGCTTTGAAAA-G--
1 AAAGAGTGCCACGGAGTTGTGGACTTT-AAAAGGAA
*
3624454 -AAG-GTGCCACGGAGTTGTGGACTTTGAAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* *
3624486 AAAGA-TCCCACTGAGTTGTGGACTTT
1 AAAGAGTGCCACGGAGTTGTGGACTTT
3624512 GAGACAAAAT
Statistics
Matches: 515, Mismatches: 58, Indels: 85
0.78 0.09 0.13
Matches are distributed among these distances:
27 62 0.12
28 10 0.02
30 14 0.03
31 56 0.11
32 25 0.05
33 64 0.12
34 119 0.23
35 32 0.06
36 125 0.24
37 8 0.02
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (35 bp):
AAAGAGTGCCACGGAGTTGTGGACTTTAAAAGGAA
Found at i:3624062 original size:27 final size:27
Alignment explanation
Indices: 3624032--3624203 Score: 146
Period size: 27 Copynumber: 5.9 Consensus size: 27
3624022 CTTAGAAGGA
*
3624032 AAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTT
* *
3624059 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTT
3624086 AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 -------AAAAGAGTGCCACGGAGTTGTGGGCTT
* * *
3624120 AATAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTT
*
3624147 AGAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTT
1 -------AAAAGAGTGCCACGGAGTTGTGGGCTT
*
3624181 AAAAGGGTGCCACGGAGTTGTGG
1 AAAAGAGTGCCACGGAGTTGTGG
3624204 ATTTTAAAAG
Statistics
Matches: 117, Mismatches: 14, Indels: 28
0.74 0.09 0.18
Matches are distributed among these distances:
27 69 0.59
34 48 0.41
ACGTcount: A:0.30, C:0.13, G:0.37, T:0.20
Consensus pattern (27 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTT
Found at i:3624098 original size:61 final size:62
Alignment explanation
Indices: 3623998--3624506 Score: 514
Period size: 61 Copynumber: 7.9 Consensus size: 62
3623988 CTTTAAAAAG
* * *
3623998 AAAAAGGTGCCACGGAGTTGTGGAC-TTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
3624059 AAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* * *
3624120 AATAGGGTGCCACGGAGTTGTGGAC-TTAGAAGGAAAAAAAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* *
3624181 AAAAGGGTGCCACGGAGTTGTGGATTTTAAAAGGGAAAAAGAGTGCCACGAAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGC-TT
*
3624245 AAAAGGGAAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGT
1 AAAA-GG-------GTGCCACGGAGTTGTGGACTTTAAAA-GGAAAAAGAGTGCCACGGAGTTGT
3624310 GGGCTTT
57 GGGC-TT
* * * * * * * *
3624317 GAAAAGAAGGTCCCACAGAATCGTAGACTTTGAAAGG---AAG-GTGCCACGGAGTCGTGGACTT
1 -AAAAG--GGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* * *
3624378 AAAAGGAATAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGGAAAAGAGTGCCACGGAATTGTGG
1 AAAA-G-----GGTGCCACGGAGTTGTGGACTTTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGG
3624443 GCTTT
59 GC-TT
* * *
3624448 GAAAAGAAGGTGCCACGGAGTTGTGGACTTTGAAAGG-AAAAGA-TCCCACTGAGTTGTGG
1 -AAAAG--GGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGG
3624507 ACTTTGAGAC
Statistics
Matches: 385, Mismatches: 38, Indels: 47
0.82 0.08 0.10
Matches are distributed among these distances:
60 4 0.01
61 142 0.37
62 22 0.06
63 29 0.08
64 41 0.11
65 10 0.03
66 4 0.01
67 46 0.12
68 3 0.01
69 16 0.04
70 3 0.01
71 4 0.01
72 56 0.15
73 4 0.01
74 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (62 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
Found at i:3624349 original size:31 final size:31
Alignment explanation
Indices: 3624313--3624377 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
3624303 GAGTTGTGGG
3624313 CTTTGAAAAGAAGGTCCCACAGAATCGTAGA
1 CTTTGAAAAGAAGGTCCCACAGAATCGTAGA
* * * * *
3624344 CTTTGAAAGGAAGGTGCCACGGAGTCGTGGA
1 CTTTGAAAAGAAGGTCCCACAGAATCGTAGA
3624375 CTT
1 CTT
3624378 AAAAGGAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (31 bp):
CTTTGAAAAGAAGGTCCCACAGAATCGTAGA
Found at i:3624529 original size:30 final size:30
Alignment explanation
Indices: 3624419--3624608 Score: 186
Period size: 30 Copynumber: 6.1 Consensus size: 30
3624409 TTTAAAAGGG
* * * *
3624419 GAAAAGAGTGCCACGGAATTGTGGGCTTTGA
1 GAAAAGA-TGCCACTGAGTCGTGGACTTTGA
* * * *
3624450 AAAGAAGGTGCCACGGAGTTGTGGACTTTGAAA
1 GAA-AAGATGCCACTGAGTCGTGGACTTTG--A
* *
3624483 GGAAAAGATCCCACTGAGTTGTGGACTTTGA
1 -GAAAAGATGCCACTGAGTCGTGGACTTTGA
3624514 GACAAA-ATGCCACTGAGTCGTGGACTTTGAA
1 GA-AAAGATGCCACTGAGTCGTGGACTTTG-A
3624545 GAAAAGGATGCCACTGAGTCGTGGACTTTGA
1 GAAAA-GATGCCACTGAGTCGTGGACTTTGA
*
3624576 GACAAA-ATGCCACTGAGTCGTGGGCTTTGA
1 GA-AAAGATGCCACTGAGTCGTGGACTTTGA
3624606 GAA
1 GAA
3624609 GGTATTTGAC
Statistics
Matches: 139, Mismatches: 11, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
29 1 0.01
30 51 0.37
31 32 0.23
32 29 0.21
33 24 0.17
34 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.23
Consensus pattern (30 bp):
GAAAAGATGCCACTGAGTCGTGGACTTTGA
Found at i:3624573 original size:62 final size:62
Alignment explanation
Indices: 3624458--3624605 Score: 226
Period size: 62 Copynumber: 2.4 Consensus size: 62
3624448 GAAAAGAAGG
* * *
3624458 TGCCACGGAGTTGTGGACTTTGAAAGGAAAAGATCCCACTGAGTTGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTG-AAGGAAAAGATCCCACTGAGTCGTGGACTTTGAGACAAAA
*
3624521 TGCCACTGAGTCGTGGACTTTGAA-GAAAAGGATGCCACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGGAAAA-GATCCCACTGAGTCGTGGACTTTGAGACAAAA
*
3624583 TGCCACTGAGTCGTGGGCTTTGA
1 TGCCACTGAGTCGTGGACTTTGA
3624606 GAAGGTATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
61 5 0.06
62 54 0.68
63 20 0.25
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (62 bp):
TGCCACTGAGTCGTGGACTTTGAAGGAAAAGATCCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:3625590 original size:14 final size:13
Alignment explanation
Indices: 3625571--3625600 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
3625561 TTTTTGTTTG
3625571 TTTGTTTCTTTTCT
1 TTTGTTTCTTTT-T
3625585 TTTGTTTCTTTTT
1 TTTGTTTCTTTTT
3625598 TTT
1 TTT
3625601 AGAAAATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (13 bp):
TTTGTTTCTTTTT
Found at i:3625864 original size:14 final size:13
Alignment explanation
Indices: 3625837--3625870 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
3625827 CCTTTGCACC
*
3625837 TTTTTTTGTTTTG
1 TTTTTTTGTGTTG
3625850 TTTTTTGTGTGTTG
1 TTTTTT-TGTGTTG
3625864 TTTTTTT
1 TTTTTTT
3625871 TGTCTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (13 bp):
TTTTTTTGTGTTG
Found at i:3625885 original size:25 final size:23
Alignment explanation
Indices: 3625840--3625890 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 23
3625830 TTGCACCTTT
*
3625840 TTTTGTTTTGTTTTTTGTGTGTTG
1 TTTTGTTTTGTCTTTTGTGTG-TG
3625864 TTTT-TTTTGTCTTTTGACTGTGTG
1 TTTTGTTTTGTCTTTTG--TGTGTG
3625888 TTT
1 TTT
3625891 ACTTTTGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 11 0.46
24 9 0.38
25 4 0.17
ACGTcount: A:0.02, C:0.04, G:0.22, T:0.73
Consensus pattern (23 bp):
TTTTGTTTTGTCTTTTGTGTGTG
Found at i:3632875 original size:51 final size:52
Alignment explanation
Indices: 3632750--3632897 Score: 237
Period size: 52 Copynumber: 2.9 Consensus size: 52
3632740 CGAAATATGA
3632750 AAATTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACATCTGGGC
3632802 AAATTTGCCTGCATGTATCGATACATTT-TATAGTGTATCGATACATCT-GGC
1 AAATTTGCCTGCATGTATCGATACATTTAT-TAGTGTATCGATACATCTGGGC
*** *
3632853 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACA
3632898 ATGTATCGAT
Statistics
Matches: 90, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
51 43 0.48
52 47 0.52
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACATCTGGGC
Found at i:3632904 original size:13 final size:13
Alignment explanation
Indices: 3632886--3632910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3632876 CAAAGATCAG
3632886 TGTATCGATACAA
1 TGTATCGATACAA
3632899 TGTATCGATACA
1 TGTATCGATACA
3632911 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3632977 original size:19 final size:20
Alignment explanation
Indices: 3632953--3633005 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
3632943 TAGCTTAAAT
3632953 TGTATCGATACAAAAC-TTA
1 TGTATCGATACAAAACTTTA
*
3632972 TGTATCGATACAACACTTTA
1 TGTATCGATACAAAACTTTA
3632992 TGTATCGATACAAA
1 TGTATCGATACAAA
3633006 TCGTTGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAAAACTTTA
Found at i:3634088 original size:20 final size:20
Alignment explanation
Indices: 3634063--3634110 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
3634053 CCGATTATAG
*
3634063 AAAATCGGTGTTTTGAAAAT
1 AAAATCGATGTTTTGAAAAT
3634083 AAAATCGATGTTTTGAAAAT
1 AAAATCGATGTTTTGAAAAT
3634103 AAAATCGA
1 AAAATCGA
3634111 GGTTGGAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (20 bp):
AAAATCGATGTTTTGAAAAT
Found at i:3634215 original size:79 final size:77
Alignment explanation
Indices: 3634111--3634314 Score: 273
Period size: 79 Copynumber: 2.6 Consensus size: 77
3634101 ATAAAATCGA
* * *
3634111 GGTTGGAGTATCCCTTCGAAAATAACAGGGTTGGGGTATCCCTGATTGTGAGAAATCAAAATTTT
1 GGTT-GAGTATCCC-TCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAAAATTTT
*
3634176 AGAAATATAGCCGG
64 AGAAATAAAGCCGG
*
3634190 GGTTAGAGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTT
1 GGTT-GAGTATCC-CTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAAAATTTT
*
3634255 AGAAATAAAGCTGG
64 AGAAATAAAGCCGG
* * *
3634269 GGTTGAAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCTCCGAT
1 GGTTG-AGTAT-CCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
3634315 GAAATAACGA
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 108 0.96
80 3 0.03
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (77 bp):
GGTTGAGTATCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAAAATTTTAG
AAATAAAGCCGG
Found at i:3634318 original size:28 final size:28
Alignment explanation
Indices: 3634269--3634342 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
3634259 ATAAAGCTGG
* *** * *
3634269 GGTTGAAGTATCCCCTCGGAAATAATGG
1 GGTTGGAGTATCCCCGATGAAATAACGA
*
3634297 GGTTGGAGTATCTCCGATGAAATAACGA
1 GGTTGGAGTATCCCCGATGAAATAACGA
*
3634325 GGTTGGTGTATCCCCGAT
1 GGTTGGAGTATCCCCGAT
3634343 TATGAAAAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.27
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGATGAAATAACGA
Found at i:3634436 original size:51 final size:52
Alignment explanation
Indices: 3634323--3634437 Score: 135
Period size: 51 Copynumber: 2.2 Consensus size: 52
3634313 ATGAAATAAC
* * *
3634323 GAGGTTGGTGTATCCCCGATTATGAAAAAATGGTGTTTTGGAAATAAAATCG
1 GAGGTTGGAGTATCCCCAATTATGAAAAAATGGTGTTTTAGAAATAAAATCG
* * * * * *
3634375 GA-GTTAGAGTATCCCTAATTGTGGAAAATTGGTGTTTTAGAAATAAAA-CT
1 GAGGTTGGAGTATCCCCAATTATGAAAAAATGGTGTTTTAGAAATAAAATCG
3634425 GAGGTTGGAGTAT
1 GAGGTTGGAGTAT
3634438 TTTCTTAGAA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
50 3 0.06
51 47 0.90
52 2 0.04
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (52 bp):
GAGGTTGGAGTATCCCCAATTATGAAAAAATGGTGTTTTAGAAATAAAATCG
Found at i:3637605 original size:31 final size:31
Alignment explanation
Indices: 3637567--3637654 Score: 133
Period size: 31 Copynumber: 2.8 Consensus size: 31
3637557 TACATTGAAA
* *
3637567 AATGTATCGATACATCAGGGTAAAAGGATAG
1 AATGTATCGATACATCAGGGTAAAAAGACAG
3637598 AATGTATCGATACATCTA-GGTAAAAAGACAG
1 AATGTATCGATACATC-AGGGTAAAAAGACAG
*
3637629 AATGTATCGATACATCTGGGTAAAAA
1 AATGTATCGATACATCAGGGTAAAAA
3637655 TGTGATTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
31 51 0.98
32 1 0.02
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (31 bp):
AATGTATCGATACATCAGGGTAAAAAGACAG
Found at i:3645431 original size:159 final size:157
Alignment explanation
Indices: 3643271--3655156 Score: 2071
Period size: 159 Copynumber: 74.7 Consensus size: 157
3643261 GAGAAGACCA
* * * * *
3643271 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG-TATGACAATTCAAT-TTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTACGAGAA-TC-ATGTTTGTCTTATT
* ** * * * * * * *
3643334 TAAGAGACAAACTTTGATTCCATCAA-AAACTATGG-AAAGAAAAGCTTTTCCTACGATACCAAA
63 TAAGGGATGAACTTTGATT---TTAAGAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * *
3643397 GCATCAATGTTAAGTATCCTGAA-GAAAGGAATG
125 GCATCAATATCATGTATCCT-AATGAAAGGAATG
* * * ** *
3643430 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCGATGCTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
* * * * ** ** *
3643495 AGGGATAAACTTTGATTTTATGGAAAATAGGGTAAAGAAAAGATTTTCACGCAAAAGAAAATCAT
65 AGGGATGAACTTTGATTTTA-AGAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
* * *
3643560 CAATATCATTTATCCTATTGAGAA-GAATA
129 CAATATCATGTATCCTAATGA-AAGGAATG
* * ** ** * * *
3643589 TGCTTATAGTGCCTAATC-ACAGAATTAATGAAGA-TCTT-CGCTAGAATCCATGTTTGTCTCAT
1 TGTTTATGGTGCCTAATCTTGA-AAAGAATGGAGATTGTTACG--AGAAT-CATGTTTGTCTTAT
* * * * * ** * **
3643651 TTAAGGCACGAACTTAGACTTTACA-AAAAT-TGGC-GGGAAAATGCCTTTCTTGTGAAACCAAA
62 TTAAGGGATGAACTTTGATTTTA-AGAAAATAGGGCAAAGAAAA-GCTTTTCTTGCAAAACCAAA
* * * * *
3643713 GCATCCATATCGTGTATCCTAACAAGAAA--ACTA
125 GCATCAATATCATGTATCCT-A-ATGAAAGGAATG
* * * * * * * * * *
3643746 TGTTTATGGTGCCTAA-CCTAAAAAAAACGGGGAATAG-TATGAGTATTCAAGTTTTTCTTATTT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTACGAG-AATCATGTTTGTCTTATTT
* ** * ** *
3643809 AAGAGACAAACTTTGATTCTATAA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAG
64 AAGGGATGAACTTTGATT-T-TAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * *
3643872 CATCAGTGTCATTTATCCTAAT-AAAGGGAATG
126 CATCAATATCATGTATCCTAATGAAA-GGAATG
* ** * * * * * **
3643904 TGTTT-TAGGT-TCTCAATCCAGAAAATAATGGAGACTGCTATGAGAATCGATGCTCATCTTATT
1 TGTTTAT-GGTGCCT-AATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATT
* * * * * ** *
3643967 TAAGGGATTAACTTTGATTATAAGGAAAATAGGGAAAAGAAAAG-ATTTCTAAGCAAAAGAAAAT
63 TAAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCT-TGCAAAACCAAAG
* * * *
3644031 CTTCAATATCATTTATCCTAAT-TAGGAGAATG
126 CATCAATATCATGTATCCTAATGAAAG-GAATG
* * ** * * *** * * *
3644063 TGCTTATAGG-ACCTAATCACGAAATGAATGAAGATCAATACCAGAATCTACGTTTGTCTCATTT
1 TGTTTAT-GGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * * * * *
3644127 GAGGCAGGAACTTAGACTTTACA-AAAATTCTTATGG-AAA-ATAA-C-TTTCTTGCGAATCCAA
64 AAGGGATGAACTTTGATTTTA-AGAAAA----TAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAA
* ** ***
3644187 AGCATTAATATCGCGTATCCTAATGAGAA-GACCA
124 AGCATCAATATCATGTATCCTAATGA-AAGGAATG
* * * * *
3644221 TGTTTATGGTGCCTAATCCTAAAAAGAATAGG-GATTAG-TATGACAATTCAAT-TTTGTGTTAT
1 TGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATT-GTTACGAGAA-TC-ATGTTTGTCTTAT
** * * *
3644283 TT-AGGAGACAAACTTTGATTCCATCAA-AAACT-GTGG-AAAGAAAAGCTTTTCCTATG--ATA
62 TTAAGG-GATGAACTTTGATT---TTAAGAAAATAG-GGCAAAGAAAAGCTTTT-CT-TGCAAAA
* * * * *
3644342 CCAAAGCATCAATGTTAAGTATCTTAAAGAAAGGAATG
120 CCAAAGCATCAATATCATGTATCCTAATGAAAGGAATG
* * * *
3644380 TGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
* * * * * ** *
3644445 AGGGATGAAC-TTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATACAAAAGAAAATCAT
65 AGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
*
3644509 CAATATCATTTATCCTAATGAGAA-GAATG
129 CAATATCATGTATCCTAATGA-AAGGAATG
* * * ** * * * * *
3644538 TGCTTATTGTGCTTAATC-ACAAAATGAATGAAGATTTTTGCTAGAATCCATGTTTGTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * * * * *
3644602 GAGGCACGAACTTAGACTTTACA-AAAAT-TGGCAGGAA-AAATGCCTTTCTTGCAAAACCAATG
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGGGCA--AAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * * *
3644664 CATCCATATCGTGTATCCGAAT--AAGAAACTA
126 CATCAATATCATGTATCCTAATGAAAGGAA-TG
* * * * * *
3644695 TGTTTATGGTGCCTAATCTTGAAAA-AATGGGGAATAG-TATGAGTATTCAAGTTTTTCTTATTT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTACGAG-AATCATGTTTGTCTTATTT
* ** * * ** *
3644758 AAGAGACCAACTTTGATTCTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAG
64 AAGGGATGAACTTTGATT-T-TAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
** * * *
3644821 CATCGGTGTCATTTATCCTAATGAAGGGAATG
126 CATCAATATCATGTATCCTAATGAAAGGAATG
* * * * * * * *
3644853 TGTTT-TAGGT-TCTCAATCCAT-AAAATAATGGAGATTGCTACGAGAATCGAAGCTCGTCTCAT
1 TGTTTAT-GGTGCCT-AAT-CTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTAT
* * * * * * * * ** *
3644915 TTAAGGGATTAACTTTGATTATAAGGAAAATAGAGAAAACAAAAGATTTCCATGCAAAAGAAAAT
62 TTAAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
*
3644980 CATCAATATCATTTATCCTAATGAGAA-GAATG
126 CATCAATATCATGTATCCTAATGA-AAGGAATG
* * * * * * * *
3645012 TGCTTATAGTGCCTAATC---ACAA-AATGAATATCT-TTGCTAGAATCAATGTTTGTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGAT-TGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * * * *
3645072 GAGGCATGAACTTAGACTTTACA-AAAAT-TGGCAGGAA-AAATGCCTTTCTTGCGAAACCAAAG
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGGGCA--AAGAAAAGCTTTTCTTGCAAAACCAAAG
** * * * * * *
3645134 CATCCTTATTATGTATCCGAA-CAAGAAGACTA
126 CATCAATATCATGTATCCTAATGAA-AGGAATG
* * * * * * * *
3645166 TGTTTATGGTGCCTAATCCTGAAAAAAAATGGGGAATATTATGAGTATTCAGGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCTTG-AAAAGAATGGAGATTGTTACGAG-AATCATGTTTGTCTTATTT
* ** * *
3645231 AAGAGACAAACTTTGATTTTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAG
64 AAGGGATGAACTTTGATTTTA--AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* *
3645294 CATCAATGTCATGTATCCTATTGAAAGGAATG
126 CATCAATATCATGTATCCTAATGAAAGGAATG
* * * * *
3645326 TGTTTTTGGCT-CCCAATCTTCAAAAGAACGGAGATTGTTACCAGAATCGATGTTTGTCTTATTT
1 TGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* ** ** *
3645390 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAGGCAAAAGAAAATCA
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* *
3645455 TCAATATCATTTATCCTAATGAAAAGAATG
128 TCAATATCATGTATCCTAATGAAAGGAATG
* * * ** * ** * *
3645485 TGCTTATAGTGCCTAGTC-ACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * * * * *
3645549 GAGGCACGAACTTAGACTTTACA-AAAATTAATAGG--AA-AAATGCCTATCTTGCAAAACCAAA
64 AAGGGATGAACTTTGATTTTA-AGAAAA-T-A-GGGCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * * *
3645610 GCATCCATATCGTGTGTCCTAACGAGAA-GACTAG
125 GCATCAATATCATGTATCCTAATGA-AAGGAAT-G
* * * * * * * * *
3645644 -GTTTATGGTGCCAAATCCTGAAAAAAAAATTGG-GAATATTATGAGTATTCAAGTTTGTCTTTT
1 TGTTTATGGTGCCTAATCTTG--AAAAGAA-TGGAGATTGTTACGAG-AATCATGTTTGTCTTAT
* ** * * * * *
3645707 TTAAGAGACAAACTTTGATTCTATAA-AAAA-CGGTGGAAAGAAAAGTTTTTCTTGCCACACCAA
62 TTAAGGGATGAACTTTGATT-T-TAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAA
* * *
3645770 AGCGTCAATGTCATGTATCCT-ATTAAAGGGAATG
124 AGCATCAATATCATGTATCCTAATGAAA-GGAATG
* * * * * * *
3645804 TGTTTTTGGTTCGC-AATCTTGAAAAGAATGGATATTGTTACGAGTATCGGTGCTTATCTTATTT
1 TGTTTATGGTGC-CTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * ** *
3645868 AAGGGATGAACTTTGATTTTAAGGAAAATATGGCAATGAAAAG-ATTTCAATACAAAATAAAATC
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTC-TTGCAAAACCAAAGC
* * *
3645932 ATCAGTATCATTTATCCTAATG-AAGAGAATA
127 ATCAATATCATGTATCCTAATGAAAG-GAATG
* ** * * * ** * * *
3645963 TGCTTATAATTCCTAATCAT-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTGTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * ** * * * *
3646027 GAGGCATGAACTTAGACTTTACA-AAAATTGGTGGGAA-AAATGCCTTTCTTGCGAAACCAAAAC
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
** * * *
3646090 ATCAATATCGCGTATCCTAGTGAGAA-GACTA
127 ATCAATATCATGTATCCTAATGA-AAGGAATG
* * * * * * * ** *
3646121 TGTTTATGGTGCCAAATCCTGAAAAAAAATGGGGAATAGAATA--AGTATTCAAATTTGTCTTTT
1 TGTTTATGGTGCCTAATCTTG-AAAAGAATGGAG-ATTG-TTACGAG-AATCATGTTTGTCTTAT
* * ** * ** *
3646184 TTGAGAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAGAAACA-CTTTTCTTGCAACAA-CA
62 TTAAGGGATGAACTTTGATTTTAAGAAAATA-GG-GCAAAGAAA-AGCTTTTCTTGCAA-AACCA
* * * * *
3646246 AAGCATCAA-AGTCATATATCTTATTGAATGGACTG
123 AAGCATCAATA-TCATGTATCCTAATGAAAGGAATG
* * * * * *
3646281 CGTTTTTGACT-CCCAATCATGAAAAGAATGGAGATTGTTA-GAAGAATCGATGCTTGTCTTATT
1 TGTTTATG-GTGCCTAATCTTGAAAAGAATGGAGATTGTTACG-AGAATC-ATGTTTGTCTTATT
* * * * * ** *
3646344 TAAGCGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
63 TAAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * *
3646409 AACAATTTCAT-TCATCC-AATTAAGGAGAATG
127 ATCAATATCATGT-ATCCTAATGAAAG-GAATG
* * * * *** * *
3646440 TGCTTATATAGTGCCTAATCAT-AAAATAAATGAAGATCACTACTAGAATCTATGTTTGTCTCAT
1 TG-TT-TATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTAT
* * * * * * * *
3646504 TT-GGGGCATGAAATTAGACTATACAAAAAATGGAGGG--AA-AAAAGCTTTTCTTTCGAAACCA
62 TTAAGGG-ATGAACTTTGATTTTA-AGAAAAT--AGGGCAAAGAAAAGCTTTTCTTGCAAAACCA
* * * * *
3646565 AAACATCATTGTCGTGTATCCTAATGAGAA-GACTG
123 AAGCATCAATATCATGTATCCTAATGA-AAGGAATG
* * * * * *
3646600 TGTTTATGGTGCCTAATCCTAAAAAGAATCGAGATTAG-TATC-ACTATTCTTGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTA-CGA-GAATCATGTTTGTCTTATT
* * ** ** * * * * *
3646663 TAAGAGATAAACTTTGATTCCATCCAAAA-CGGTGGAATGAAAAGCTTTGCTTGCAACACCAAAG
63 TAAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * **
3646727 CATCAATATCACGTATCCTATTGATGGGAATG
126 CATCAATATCATGTATCCTAATGAAAGGAATG
* * * * * *
3646759 TGTTTTTGGTTCCCAATCTTGCAAAGAATGGAGATTCTTATGAGAATCGATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
* ** * * ** *
3646824 AGGGATGAACTTTGATTTTACGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCAT
65 AGGGATGAACTTTGATTTTA-AGAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
* * *
3646889 CAATATTATTTATCCTAATGAGAA-AAATG
129 CAATATCATGTATCCTAATGA-AAGGAATG
* * ** * *** * *
3646918 TGCTTATAGTGCCTAATC-ACAAAATGAATGAAGATCACTACTAGAATCCATGTTTGTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * * * * *
3646982 GAGGCATGAA-TTTGGACTATACA-AAAATTAGCGGGAAA-AATA-CCTTTCTTGCGAAACAAAA
64 AAGGGATGAACTTT-GATTTTA-AGAAAA-TAG-GGCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * *
3647043 CCATCCATATCATGTATCC-AACTGAGAA-GACTA
125 GCATCAATATCATGTATCCTAA-TGA-AAGGAATG
* * * * * * * * * *
3647076 TATTTATGTTGCCTAATCCTGAAAAAAATGGGGAATATTATGAGTATTCAAGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAG-AATCATGTTTGTCTTATTTA
* ** * * * *
3647141 AGAGACAAACTTTGATTCTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
65 AGGGATGAACTTTGATT-T-TAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * * *
3647204 ATAAATGTCATGTATCTTATTGAAGGGAATG
127 ATCAATATCATGTATCCTAATGAAAGGAATG
* * *
3647235 TGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
1 TGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * ** *
3647299 AAGGGATGAACTTTGATTTTAAGGAAAAT-GAGGCAAAAAAAAGATTTTCATGCAAAAGAAAATC
64 AAGGGATGAACTTTGATTTTAA-GAAAATAG-GGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * *
3647363 ATCAAAATCATTTATCCTATTG-AGGAGAATG
127 ATCAATATCATGTATCCTAATGAAAG-GAATG
** ** * * * * * *
3647394 TGTTTATAATGCCTAAT-TACATAATGAAAGAAGATCT-TTACTAGAATACAAGTTTGTCTCATT
1 TGTTTATGGTGCCTAATCTTGA-AAAGAATGGAGAT-TGTTACGAGAAT-CATGTTTGTCTTATT
* * ** * * * * * * * *
3647457 TGAGGCACAAACTTAGATATTATA-AAAATTGGTAG-GAA-AAATGCCTTCCTTGGAAAACCAAA
63 TAAGGGATGAACTTTGATTTTA-AGAAAATAGG--GCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* *
3647519 GTATCAATATCATGTATCCTATTGAGAA-GACCAT-
125 GCATCAATATCATGTATCCTAATGA-AAGGA--ATG
* * * **
3647553 T-TTTATGGTGCCTAATCCTAAAAATAATGGAGATTAGTATA--ATTATACATGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GT-TACGAGAAT-CATGTTTGTCTTATT
* ** * ** * *
3647615 TAAGAGACAAACTTTGATTCTACCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAG
63 TAAGGGATGAACTTTGATTTTAAGAAAATA-GG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * *
3647679 CATCAATGTCATGTATCCTATTGAAGGGAATG
126 CATCAATATCATGTATCCTAATGAAAGGAATG
* * * *
3647711 TGTTTTTGGCT-CCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
1 TGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * ** *
3647775 ACGGGATGAACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA
64 AAGGGATGAACTTTGATTTT-AAGAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* *
3647840 TCAACATCAT-TCATCCTAATG-AGGAGAATG
128 TCAATATCATGT-ATCCTAATGAAAG-GAATG
* * ** * * ** * * *
3647870 TGCTTATAGTGCCTAATC-ACAAAATAAATGAAGATCATTACTAGAATCCATGTTTTTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * ** **** * *
3647934 GAGGTATGAACTTAGACTTTACA-AAAATTGGTGGGAA-AAATTAATTTCTTGCGAAAGCAAAGC
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * **
3647997 ATCAATATCGTGTATCGTAATGAGAA--AACCA
127 ATCAATATCATGTATCCTAATGA-AAGGAA-TG
* * * * *
3648028 TGTTTATGGTGCCTAATCCTGAAATGAATTGG-GATTAG-TATGACAATTCATGTTTATCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAA-TGGAGATT-GTTACGAGAA-TCATGTTTGTCTTATT
* * * * * * * * **
3648091 TAAGAGTTTAAATGTTGATTCCATCAA-AAACT-GTGG-AAATAAAAGCTTTTCTTGCGATGCCA
63 TAAGGGATGAACT-TTGATT---TTAAGAAAATAG-GGCAAAGAAAAGCTTTTCTTGCAAAACCA
* * * * *
3648153 AAGCATCAATGTTAAGCATCCTAAAGAAAGGAATG
123 AAGCATCAATATCATGTATCCTAATGAAAGGAATG
* * * * *
3648188 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
** * * * ** **
3648253 AGGGATGAACTTTGATTTTAAGGAAAATAGGAAAAAGAAAAGATTTTCATGCTAAAGAAAATTAT
65 AGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
* *
3648318 CAATATCGTTTATCCTAATGAGAA-GAATG
129 CAATATCATGTATCCTAATGA-AAGGAATG
* * * ** * ** ** * *
3648347 TGCTTCTAGTGCCTAATC-ACAAAATGAATGAAGATCATTATTAGAATCAATGTTTGGCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * * * * * *
3648411 GAGGCACGAACTTAGACTTTACA-AAAATTGGTG-AAA-AAATGCCTTTT-TTACGAGACCAAAG
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAG-CTTTTCTTGCAAAACCAAAG
*
3648472 CATCAATATCGTGTATCCTAATGAGAA-GAATAG
126 CATCAATATCATGTATCCTAATGA-AAGGAAT-G
* ** * * * *
3648505 -GTGTATGGTGCCTAATCCAGAAAAGAATAGG-GATTGGTATGA-ATATTCCTGTTTGACTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAAT-GGAGATTGTTACGAGA-A-TCATGTTTGTCTTATT
* ** ** * * * *
3648567 TAAGAGACAAACTTTG-TTTCTATCAAAA-ACGGTGGAAATAAAAGCTTTTCTTGCGACACCAAA
63 TAAGGGATGAACTTTGATTT-TAAGAAAATA-GG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* ** * *
3648630 GCATCAATGTTGTGTATCCTATTGAACGGAATG
125 GCATCAATATCATGTATCCTAATGAAAGGAATG
* * * * * * * *
3648663 TGTTT-TAGGTTCCTAATCCTGAAAATAATGGAGACTGCTAGGAGAATCAATGCTCGTCTTATTT
1 TGTTTAT-GGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * * * *
3648727 AAGGGATGAACTTTGATTATAAAGAAAATAGGGCAAAGAAAAGATATCCATGCTACACCAAGGCA
64 AAGGGATGAACTTTGATT-TTAAGAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* *
3648792 TCAATGTCATGTATCCTAATGAAGGGAATG
128 TCAATATCATGTATCCTAATGAAAGGAATG
* * * ** * *
3648822 TGTTTTTGGCT-CCCAATCTTGAAAAGAACGGAGATTGTTGTGAGAATTGATGCTTGTCTTATTT
1 TGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAA-TCATGTTTGTCTTATTT
* * * ** * ** *
3648886 AAGGGATGAACTTTG-TCTCTT----AAATAAGACAAACATGAATA-CTCATCCT--AATCCCCA
64 AAGGGATGAACTTTGAT-T-TTAAGAAAATAGGGC-AA-A-GAAAAGCTTTTCTTGCAAAACCAA
** * * * * ** * *
3648943 TTCTTTTCAAGATTA-GGAT-AGAATCAAA-GCA--
124 AGC--ATCAATATCATGTATCCTAATGAAAGGAATG
*** * * * * * * *** **
3648974 TCAATAT--CGCGT-ATCCT-AAAGAGAA--GACCA-TGTTTACGGTGCCTAATCCTGAAAAGAA
1 TGTTTATGGTGCCTAATCTTGAAA-AGAATGGA-GATTG-TTAC-GAG---AATCATG-TTTGTC
* * * *** ***
3649032 TTGGGA-TT-A-GTATG-GCTATTCATGTTT--G-TCTTA-TTTAAGAGACAAA-CTTTGATTCT
58 TT---ATTTAAGGGATGAACT-TTGAT-TTTAAGAAAATAGGGCAA-AGA-AAAGC-TT--TTCT
** * * * * * * **
3649088 AT-CAAAAGTGGTGGAAAGAAT-AGCTTATCTTGCGATACC-AAAG-CATCAA--
113 -TGCAAAA-----CCAAAGCATCA--ATATCATG-TAT-CCTAATGAAAGGAATG
* * * *** * * ** * * * * * * ** *
3649137 TG-TCAT-GTATCCTAGTGAAGAGAATGTATTTCAGGTTCCTAATCCTAAAAATAATG-GAGACT
1 TGTTTATGGT-GCCTAATCTTGA-AAAG-AATGGAGATT-GT--TAC-GAGAATCATGTTTGTCT
** ** *** * ** * *** *
3649199 GCTATGAGAATCGATG--C-TTG-TTTT-A-TTTA-AGGG--ATGAACTTTGATTTTAAGGAAAA
59 --TAT-TTAAGGGATGAACTTTGATTTTAAGAAAATAGGGCAAAGAA--AAGCTTTTCTTG-CAA
* ** * * *
3649255 TAAGGCAAA-CAAAAATTTCCATGTA----AAAG-AA--AATCA
118 -AA-CCAAAGCATCAATAT-CATGTATCCTAATGAAAGGAAT-G
*** ** * * ** * * * * *
3649291 TCAATATAAT-TC-ATTCTAATGAGGAGAATGTGCTTATAATGCCTAATCAC-AAAATGAATG-A
1 TGTTTATGGTGCCTAATCT--TGAAAAGAATG-G---AGATTG--T--T-ACGAGAAT-CATGTT
* * ** *** * * * *
3649352 AGATCAATACTAGAATCCATGTTTACCTCATTTGAGGCACGAACTTAGACTTTACAAAA-ATTGG
54 TG-TC-TTA-TTTAAGGGATG---A--AC-TTT-------G-A-TT----TTAAGAAAATA-GGG
**** ** * * *** ***
3649416 TGTGGAAAATGC-TTTCTTGTGAAACCAAAACATTAATATTGCGTATCCTAATGAGAA-GACCA
96 CAAAGAAAA-GCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATG
* * * *
3649478 TGTTTATGTTGCCTAATCCTGAAAAGAAT-GAGGATTAG-TATGACAATTCATGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGA-GATT-GTTACGAGAA-TCATGTTTGTCTTATT
* * ** ** * * *
3649541 TAAGAGACGAACTTTGATTCCATTAAAA-AGGGTAGAAAGAAAAGCTTTTCTTGCGATACCAAAG
63 TAAGGGATGAACTTTGATTTTAAGAAAATAGGG--CAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * *
3649605 CATCAATGTTAAGTATCCTAAAGAAAGGAATG
126 CATCAATATCATGTATCCTAATGAAAGGAATG
** * * * * * *
3649637 CATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTATCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
** * * * ** * *
3649702 AGGGATGAACTTTGATTTTAAGGAAAATATAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCTT
65 AGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
*
3649767 CAATATCATTTATCCTAATGATAA-GAATG
129 CAATATCATGTATCCTAATGA-AAGGAATG
* * * * * ** * *
3649796 TGCTTATAGTGCCTAATCAT-AAAATGAATGAAAATCATTACTAGAATCCATTGTTTGTCTCATT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CA-TGTTTGTCTTATT
* * * * * * * * * * *
3649860 TCAGGCACGAACTTAGACTTTACA-AAAAT-TGGCAGGAA-AAATGCCTTCCTTACGAAACCAAA
63 TAAGGGATGAACTTTGATTTTA-AGAAAATAGGGCA--AAGAAAAGCTTTTCTTGCAAAACCAAA
* * * *
3649922 GCATCCATATCTTGTATCCTAATGAGAA-GACTA
125 GCATCAATATCATGTATCCTAATGA-AAGGAATG
* * * *
3649955 TGTTTATGTTGCCTAATCCTGAAAAGAAT-GAGGATTAG-TATGACAATTCATGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGA-GATT-GTTACGAGAA-TCATGTTTGTCTTATT
* * * * * *
3650018 TAAGAGACGAACTTTGATTCCATCAA-AAACGATA--G-AAAAAAAAGCTTTTCTTGCGATACCA
63 TAAGGGATGAACTTTGATT---TTAAGAAA--ATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCA
* * * *
3650079 AAGCATCAATGTTAAGTATCCTAAAGAAAGGAATG
123 AAGCATCAATATCATGTATCCTAATGAAAGGAATG
** * * * ** *
3650114 CATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCGATGCTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
* * * * ** * *
3650179 AGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCTT
65 AGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
* *
3650244 CAATATCTTTTATCCTAATGAGAA-GAATG
129 CAATATCATGTATCCTAATGA-AAGGAATG
* * * * ** * *
3650273 TGCTTATAGTGCCTAATCAT-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCATATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * * * * *
3650337 CAGGCATGAACTTAGACTTTACA-AAAAT-TGGCAGGAA-AAATA-CCTTCCTTGCGAAGCCAAA
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGGGCA--AAGAAA-AGCTTTTCTTGCAAAACCAAA
* * * * *
3650398 GCATCCATATCGTGTATCCTACTGAGAA-GACTA
125 GCATCAATATCATGTATCCTAATGA-AAGGAATG
* * * * * * * *
3650431 TGTTTATGGTGCCTAATCCTGAAATA-ATTGGGGAATATTATGAGTATTCAAGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCTTGAAA-AGAATGGAGATTGTTACGAG-AATCATGTTTGTCTTATTT
* ** * * * *
3650495 AAGAGACAAACTTTGATTCTATAA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTACGACACCAAAG
64 AAGGGATGAACTTTGATT-T-TAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
** * *
3650558 CATCAATGCCATGTATCCTATTGAAAGGAATA
126 CATCAATATCATGTATCCTAATGAAAGGAATG
* * * * * *
3650590 TGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAAATTTTTATGAGAATCGATGCTTGTCTTATTT
1 TGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* ** * * ** *
3650654 AAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCA
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* * ** *
3650719 TTAATATCATTTATCCTGTTG-AGGAGAATG
128 TCAATATCATGTATCCTAATGAAAG-GAATG
* ** * *** * *
3650749 TGTTTATAGCT-CCTAATC-ACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATT
1 TGTTTAT-GGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATT
* ** * * * ** * ***
3650812 TAAGGCACAAACTTAGACTTTACA-AAAATTGGTG--TGGAAAATGCCTTTCTTATGAAACCAAA
63 TAAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAA-GCTTTTCTTGCAAAACCAAA
* * *** ***
3650874 ACATTAATATTGCGTATCCTAATGAGAA-GACCA
125 GCATCAATATCATGTATCCTAATGA-AAGGAATG
** * *
3650907 TGTTTATGGTGCCTAATCCAGAAAAGAATGG-GATTAG-TATGACAATTCATGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTACGAGAA-TCATGTTTGTCTTATTT
* ** * * * * ** *
3650970 AAGAGACAAACTTTGATTCCATAA-AAAA-CGGTGGAAATAAAAGCTTTTCTTGTGATACCAAAG
64 AAGGGATGAACTTTGATT--TTAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * * *
3651033 CATCAATGTTAAGTATTCTAAAGAAAGGAATG
126 CATCAATATCATGTATCCTAATGAAAGGAATG
** * * * * *
3651065 CATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTAGTCTTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
* * * * * * ** ** *
3651130 AGAGATAAACTCTAATTTTAAGGAAAATATGGCAAAGAAAAGATTTTCAGGCAAAAGAAAATCAT
65 AGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
* * *
3651195 CAATATCGTTTATCCTAATGAAAAGAATG
129 CAATATCATGTATCCTAATGAAAGGAATG
* ** * ** * ** ** **
3651224 TGGTTATAATGCCTAGTC-ACAAAATGAATGAAGATCATTACCTGAATCTATGTTTGTCTCGTTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * ** * * **
3651288 GAA-GCATGAACTTAGACTTTTCA-AAAATTGGTGGGAA-AAATGCCTTTCTTGTGAAACCAAAG
64 -AAGGGATGAACTTTGA-TTTTAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
** * * **
3651350 CATCAATATTTTGTATCCTAGT-AAGAAGAACA
126 CATCAATATCATGTATCCTAATGAA-AGGAATG
** * * * * * * *
3651382 ACTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTAGTGCTTGTCTTATAT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCA-TGTTTGTCTTATTT
* * ** * * ** * *
3651446 AAGAGATAAACTTTGATCCTAACAAAA-ACGGTGGAAAGCGAAGCTTTTCTTGCAACACCAAAGT
64 AAGGGATGAACTTTGATTTTAAGAAAATA-GG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * * *
3651510 GTCAATGTCATGTATCCTATTGAAGGGACTG
127 ATCAATATCATGTATCCTAATGAAAGGAATG
* * * *
3651541 TGTTTTTTGCT-CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGGTTGTCTTATTT
1 TG-TTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * ** * *
3651605 AAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAACAGATTTCCAGGGAAAA-GAAAGTC
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAG-C
* * *
3651669 ATCATTATCATTTATCCTAATGAAAAGAATG
127 ATCAATATCATGTATCCTAATGAAAGGAATG
* ** ** ** * *
3651700 TGCTTATATTGCCTAATC-ACAAAATGAA-GGAAGATCATTACTAGAATCTATGTTTGTCTCATT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGG-AGATTGTTACGAGAATC-ATGTTTGTCTTATT
* ** * * * * ** * * *
3651763 TGAGACACGAACTTAGACTTTACA-AAAATTGGTGTGAA-AAATGCCTTTCTTGCGAAACCAAAG
63 TAAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * * *
3651826 CGTCCATATCGTGTATCCTAATGAGAA-GACTA
126 CATCAATATCATGTATCCTAATGA-AAGGAATG
* * * * * * * * *
3651858 TGTTTATGGTGCCTAATCCTGAAAAAAATGGGGAATATTATGAGTATTCAAGTTTGTCTTTTTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAG-AATCATGTTTGTCTTATTTA
** ** * * *
3651923 AGACACAAACTTTGATTCTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAATACCAAAGC
65 AGGGATGAACTTTGATT-T-TAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * * *
3651986 ATTAATGTCTTGTATCCTATTGAAGGGAATG
127 ATCAATATCATGTATCCTAATGAAAGGAATG
* * * * * * *
3652017 TGTTTTTGGTTTCC-AATCTTGAAATGAATGGAGATTGCTATGAGAATCGATGCTTATCTTATTT
1 TGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * ** *
3652081 AAGGGATCAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTCGATACAAAAGAAAATC
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTC-TTGCAAAACCAAAGC
* * *
3652145 ATCAATATCATTTATCCTAGTG-AGGAGAATG
127 ATCAATATCATGTATCCTAATGAAAG-GAATG
* * * ** * ** * **
3652176 TGCTTATAGTTCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * * * * * *
3652240 GAGGCACGAACTTAGACTTTACA-AAAATTAGTGG-GAA-AAATGCCTTTCTTGCGAAATCGAAA
64 AAGGGATGAACTTTGATTTTA-AGAAAA-TAG-GGCAAAGAAAAGCTTTTCTTGC-AAAACCAAA
* ** * *
3652302 -CATCAAAATCGCGTATCCTAATGAGAA-GACTA
125 GCATCAATATCATGTATCCTAATGA-AAGGAATG
* ** * * * * * * ** * *
3652334 TGCTTATGGCACCTAATCTTGAAAAAAACGGGGAATAG-AATGAGTTTTCAAGTTTGTCTTTTTT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAG-ATTGTTACGAG-AATCATGTTTGTCTTATTT
** ** * ** * * * *
3652398 GCGGGACAAACTTTGATTCTATCAAAA-ACGGTGGAAA-AAATGCTTTTCTTGCGAGACCAAAGC
64 AAGGGATGAACTTTGATTTTAAGAAAATA-GG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * *
3652461 ATCAA-AGTCATGTATCCTATTGAACGGACTT
127 ATCAATA-TCATGTATCCTAATGAAAGGAATG
* * * *
3652492 TGTTTTTGGCT-CCCAATC-AGTAAAAGAATGGAGATTGTTACGAGAATCCATGCTTGTCTTATT
1 TGTTTATGG-TGCCTAATCTTG-AAAAGAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATT
* * * ** *
3652555 TAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCGTGCAAAAAAAAATC
63 TAAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* *
3652620 ATCAATATCAT-TCATCCTTATG-AGGAGAATG
127 ATCAATATCATGT-ATCCTAATGAAAG-GAATG
* * * ** * * * * * *
3652651 TGCTTATAGCGCCTAATC-AAAAAATAAAAGAAGATTGTTACTAGAATCCATGTTTTTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * * * * *
3652715 GAGGTG-CGAACTTAGACTTTACA-AAAATTAGAGG-GAA-AAATGCCTTTCTTGCGAAAGCAAA
64 AAGG-GATGAACTTTGATTTTA-AGAAAA-TAG-GGCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* ***
3652776 GCATTAATATCATGTATCCTAATGAGAA-GACCA
125 GCATCAATATCATGTATCCTAATGA-AAGGAATG
* ** * *
3652809 TGTTTCTGGTGCCTAATCCAGAAAAGAATTGG-GATTAG-TATGACAATTCATGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAA-TGGAGATT-GTTACGAGAA-TCATGTTTGTCTTATT
* ** * * *** * *
3652872 TAAGAGACAAACTTTGATTCCATCAA-AAATTA-TAAAAAGAAAAGCTTTTCTTGTGACAA-CAA
63 TAAGGGATGAACTTTGATT---TTAAGAAAATAGGGCAAAGAAAAGCTTTTCTTG-CAAAACCAA
** * * * * *
3652934 AGCATTGATGTTAAGTATCCTAAAGAAATGAATG
124 AGCATCAATATCATGTATCCTAATGAAAGGAATG
* * *
3652968 TGTTTTTCGTTCAC-AATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGTTTGTCTTATTT
1 TGTTTATGGTGC-CTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * ** * ** *
3653032 AAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCTAAAGAAAATCA
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* * * * *
3653097 TAAATATCGTTTATAGTGCCTAATCAATAAAAGAATG
128 TCAATATC--ATGTA-T-CCTAAT---GAAAGGAATG
* * * * * * *
3653134 AAGATCATTACTAGAATCCTTGTTTGTCTCAT-TTGAGGCACGAACT-TAGACT-TTAC-A-AA-
1 -TG-T--TTA-T-G-------G--TGCCTAATCTTGA--AAAGAA-TGGAGATTGTTACGAGAAT
* * * *** * ** ** * **** * * *
3653193 -A--ATTGAC-GAGAAAAATGCCT-TTCTTGCGAGAGGAAAGCATCAATATTGTGCGAAGAAAAG
48 CATGTTTGTCTTA-TTTAAGGGATGAACTT-TGA-TTTTAAG-A--AA-ATAGGGCAAAGAAAAG
* * * ** * * * *
3653253 ATTTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAAT-AAGAAGAATG
106 CTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAA-AGGAATG
* ** ** ** * * * *
3653305 TGCTTATAATGCCTAATC-ACAAAATGAATTAAGATCGTTACAAGAATCCTTGTTTGTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * ** * * * * * * ** * *
3653369 GAGGTACAAACTTAGACTTTACA-AAAATTGGTGGAAA-AAATGCCTTTCTTTTAAAACGAAAAC
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * *
3653432 ATCAATATCGTATATCCTAATGGGAA-GACCT-
127 ATCAATATCATGTATCCTAAT-GAAAGGA-ATG
* * *
3653463 TGTTTATGGTGCCTAATCCT-AAAAGGAATGGAGATTAG-TATGAGTATTCATGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATT-GTTACGAG-AATCATGTTTGTCTTATT
* ** * * * *
3653526 TAAGAGACAAACATTGATTCTATCA-AAAAT-GGTGAAAAGAAAAGCTTTTCTTG-AGACACCAA
63 TAAGGGATGAACTTTGATT-T-TAAGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCA-AAACCAA
* * ** *
3653588 AGCATCAATGTCAAGTATCCTAAAAAAAGGATTG
124 AGCATCAATATCATGTATCCTAATGAAAGGAATG
* * * * * * * * * * *
3653622 TGTTT-TAGGTTCCCAATCCTAAAAATATTGGAGACTGTAACAAGAATCGAGGCTTGTCTTATTT
1 TGTTTAT-GGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * ** *
3653686 AAGGGATGAACTATGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAAAAAAATC
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGC-AAAACCAAAGC
* * *
3653751 ATCAATATGATTTATCCTAATG-AGGAGAATG
127 ATCAATATCATGTATCCTAATGAAAG-GAATG
* ** ** * * * * *
3653782 TGCTTATAATGCCTAATC-AAAAAATGAATGAAGATCGTTACTAGAATCCTTGTTTGTCTCATTT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
** ** * * * * ** * * *** *
3653846 AAGTCACAAACATAGACTTTACA-AAAATTGGTGTGAA-AAATGCCTTTCTTATGAAACCAAAAC
64 AAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * ***
3653909 ATAAATATCATATATCCTAATGGGAA-GACCA
127 ATCAATATCATGTATCCTAAT-GAAAGGAATG
*** * * * * *
3653940 TGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAG-TATGAGTATTTAGGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTACGAG-AATCATGTTTGTCTTATTT
* * * ** * * *
3654004 AAGAGATAAACTTTGATTCTATCAAAA-ACGGTAG-AAAGAAAAGCTTTTCTTACGACACCAAAG
64 AAGGGATGAACTTTGATTTTAAGAAAATA-GG--GCAAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * *
3654067 CAAT-AATGTCAAGTATCCTAAAGAAAGGATTG
126 C-ATCAATATCATGTATCCTAATGAAAGGAATG
* * * * ** * * *
3654099 TGTTT-TAGGTTCCTAATCTTGAAAATATTAGAGACAGTAATGAGAATCGATGCTTGTCTTATTT
1 TGTTTAT-GGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * ** *
3654163 AAGGGATGAA-TTATGATTCTGAGGAAAATAGGGCAAAGAAAAG-ATTTCAATGCAAAAGAAAAT
64 AAGGGATGAACTT-TGATT-TTAAGAAAATAGGGCAAAGAAAAGCTTTTC-TTGCAAAACCAAAG
*
3654226 CATCAATATCAT-TAATCCCAATGAGAA-GAATG
126 CATCAATATCATGT-ATCCTAATGA-AAGGAATG
* * * * ** * * *
3654258 TGCTTATAGTGCCTAATCAT-AAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCA-TT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCTTATTT
* * * * * * ** * * **
3654321 -CGAGAAGCAAACTTAGATATTACA-AAAATTGGTGGGAA-AAATGCTTTTGTTGTGAAACCAAA
64 AAGGGATG--AACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * ***
3654383 ACATCAATATCATATATCCTAATGGGAA-GACCA
125 GCATCAATATCATGTATCCTAAT-GAAAGGAATG
* * * * * * *
3654416 TATTTATGGTGCATAATCCTAAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTACGAG-AATCATGTTTGTCTTATTT
* ** * * ** * * * * *
3654480 AAGAGACAAACTTTGATTCTACAAAAAACGGTGGAAAAAAAAAGCTTTTCTTACGACACCAAAGC
64 AAGGGATGAACTTTGATTTTA-AGAAAATAG-GGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * *
3654545 AAT-AAT-GCCTAGTATCCTAAAGAAAGGATTG
127 -ATCAATATCAT-GTATCCTAATGAAAGGAATG
* * * * * * * **
3654576 TGTTTA-GGTTCCCAA-CTCTGAAAATAATGGAGACTGCTATGAGAAGCGATGTTCATCTTATTT
1 TGTTTATGGTGCCTAATCT-TGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTT
* * * * * ** *
3654639 AAGGGATAAACTTTGATTATAAGGAGAATAGGGCAAAGAAAAGATTTCCTTGCAAAAAAAAATCA
64 AAGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
*
3654704 TCAATATCACT-TATCCTAATGAAAAGAATG
128 TCAATATCA-TGTATCCTAATGAAAGGAATG
** * * ** * * *
3654734 TGTTTACAGTGCCTAATCCT-AAAATGAATGAAGATCATTTCTAAAATCCATGTTTGTCTCT-TT
1 TGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTACGAGAAT-CATGTTTGTCT-TATT
* * ** * * * *** * **
3654797 TTAGGCACAAACTTAGACTTTACA-AAAATTGGTGGGGAGAAAA-CCTTTCTTGCGAAAA-TGAA
63 TAAGGGATGAACTTTGATTTTA-AGAAAATAGG-GCAAAGAAAAGCTTTTCTTGC-AAAACCAAA
* * *
3654859 GCATTAATATCACGTATCCTAATGAGAA-GAATA
125 GCATCAATATCATGTATCCTAATGA-AAGGAATG
* ** * * * *
3654892 TGTTTATTGTGCCTAATCTTGAAAAG-ATTAAGGATTAG-CATGACAATTCAAGTTTGTCTTATT
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGA-GATT-GTTACGAGAA-TCATGTTTGTCTTATT
* ** ** * * *
3654955 TAAGAGACAAACTTTGATTCCACA-AAACACTATGG-AAAGAAAAGCTTTTCTTGCGATACCAAA
63 TAAGGGATGAACTTTGATTTTA-AGAAA-A-TAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * * * *
3655018 TCATCAATGTCCTATATCCTATTGAAGGGAATG
125 GCATCAATATCATGTATCCTAATGAAAGGAATG
* * * * *
3655051 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGT-TTATTTA
1 TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGTTTGTCTTATTTA
* * *
3655115 AGGGATGAACTATAATTTTAAGGAAAATAGGGCAAAAAAAAG
65 AGGGATGAACTTTGATTTTAA-GAAAATAGGGCAAAGAAAAG
3655157 GGTTTCCATG
Statistics
Matches: 8252, Mismatches: 2690, Indels: 1571
0.66 0.21 0.13
Matches are distributed among these distances:
147 4 0.00
148 6 0.00
149 10 0.00
150 3 0.00
151 13 0.00
152 18 0.00
153 18 0.00
154 67 0.01
155 83 0.01
156 130 0.02
157 405 0.05
158 2289 0.28
159 4049 0.49
160 665 0.08
161 184 0.02
162 27 0.00
163 27 0.00
164 11 0.00
165 5 0.00
166 17 0.00
167 9 0.00
168 9 0.00
169 6 0.00
170 5 0.00
171 13 0.00
172 1 0.00
173 4 0.00
174 19 0.00
175 4 0.00
176 4 0.00
177 9 0.00
178 42 0.01
179 12 0.00
180 8 0.00
181 16 0.00
182 18 0.00
183 6 0.00
184 7 0.00
185 5 0.00
186 3 0.00
187 16 0.00
188 2 0.00
189 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
TGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCATGTTTGTCTTATTTAA
GGGATGAACTTTGATTTTAAGAAAATAGGGCAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCA
ATATCATGTATCCTAATGAAAGGAATG
Found at i:3645980 original size:951 final size:948
Alignment explanation
Indices: 3642771--3653238 Score: 12342
Period size: 951 Copynumber: 11.0 Consensus size: 948
3642761 AGGATAGAAT
* * * *
3642771 CAAAGCATTAAAATTGTGTATCCTAGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG--AAAAA
* * * * *
3642836 AATGGGGAAAAGTATAAGTGTTCAAGTTTTTCTTATTTAAGAGACAAACTTTGATTTTATCAAAA
64 AATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * ** *
3642901 ACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAGTGTCATCAATCCTAATGAAGGGA
129 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGA
* * * * * ** * *
3642966 ATGTGTTTTAGGTTCTCAATCTAGAAAATAATGGAGACTAATGCGAGAATCGATGCTCGTCTTAT
194 ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
* * * * * **
3643031 TTAAGGGATTAACTTTGATTATAAGGAAAATAGGGAAAAGAAAATATTTCTAACCAAAAGAAAAT
259 TTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * *
3643096 CATCAATATCATTTATCCTAATTAAGAGAATGTGCTTATAGTACCCAATCACAAAATGAATGAAG
324 CATCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT----
* * * *
3643161 ATCAATACCAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAGAAATT--CTT
385 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGC-A
*
3643224 GTGGAAAATAG-CTTTCTT--G----CAAA--A-C----T--TGTATCCTAATGAGAAGACCATG
449 G-GAAAAAT-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATG
* *
3643273 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACAATTCAATTTTGTCTTATTTAAG
512 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAG
* * *
3643338 AGACAAACTTTGATTCCATCAAAAACT-ATGGAAAGAAAAGCTTTTCCTACGATACCAAAGCATC
577 AGACAAACTTTGATTCCATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATC
*
3643402 AATGTTAAGTATCCTGAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTG
641 AATGTTAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTG
* * * *
3643467 TTATAAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTATGGAAAATAGGGTAAAG
706 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
3643532 AAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGAAGAATATGCTTATA
771 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATA
* * * *
3643597 GTGCCTAATCACAGAATTAATGAAGATC-TTCGCTAGAATCCATGTTTGTCTCATTTAAGGCACG
836 GTGCCTAATCACAAAATGAATGAAGATCATT-ACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
3643661 AACTTAGACTTTACAAAAATTGG-CGGGAAAATGCCTTTCTTGTGAAAC
900 AACTTAGACTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAAC
* ** * *
3643709 CAAAGCATCCATATCGTGTATCCTAACAAGAAAACTATGTTTATGGTGCCTAA-CCTAAAAAAAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
* * * *
3643773 CGGGGAATAGTATGAGTATTCAAGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT
66 TGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * *
3643838 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAGTGTCATTTATCCTAATAAAGGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT
* * ** * * * * **
3643903 GTGTTTTAGGTTCTCAATCCAGAAAATAATGGAGACTGCTATGAGAATCGATGCTCATCTTATTT
196 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* * * * * *
3643968 AAGGGATTAACTTTGATTATAAGGAAAATAGGGAAAAGAAAAGATTTCTAAGCAAAAGAAAATCT
261 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * *
3644033 TCAATATCATTTATCCTAATTAGGAGAATGTGCTTATAG-GACCTAATCACGAAATGAATGAAGA
326 TCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTG-CCTAATCAC--AA--AATGAATA
* * * * * ***
3644097 TCAATACCAGAATCTACGTTTGTCTCATTTGAGGCAGGAACTTAGACTTTACAAAAATTCTTATG
386 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCA-G
** * * *
3644162 G-AAAATAACTTTCTTGCGAATCCAAAGCATTAATATCGCGTATCCTAATGAGAAGACCATGTTT
450 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTT
* * * * *
3644226 ATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACAATTCAATTTTGTGTTATTTAGGAGA
515 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAGA
* **
3644291 CAAACTTTGATTCCATCAAAAACT-GTGGAAAGAAAAGCTTTTCCTATGATACCAAAGCATCAAT
580 CAAACTTTGATTCCATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAAT
* *
3644355 GTTAAGTATCTTAAAGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTGTTA
644 GTTAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTA
* *
3644420 TGAGAATCAATGCTTGTCTTATTTAAGGGATGAAC-TTGACTTTAAGGAAAATAGGGCAAAGAAA
709 TGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * *
3644484 AGATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATTGTG
774 AGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTG
* ** *
3644549 CTTAATCACAAAATGAATGAAGATTTTTGCTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
839 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* *
3644614 TAGACTTTACAAAAATTGGCAGGAAAAATGCCTTTCTTGCAAAAC
904 TAGACTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAAC
* * * * *
3644659 CAATGCATCCATATCGTGTATCCGAATAAGAA-ACTATGTTTATGGTGCCTAATCTTG-AAAAAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
* * *
3644722 TGGGGAATAGTATGAGTATTCAAGTTTTTCTTATTTAAGAGACCAACTTTGATTCTATCAAAAAT
66 TGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* ** * *
3644787 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCGGTGTCATTTATCCTAATGAAGGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT
* * * * * * * *
3644852 GTGTTTTAGGTTCTCAATCCAT-AAAATAATGGAGATTGCTACGAGAATCGAAGCTCGTCTCATT
196 GTGTTTTTGGTTCCCAAT-CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* * * * *
3644916 TAAGGGATTAACTTTGATTATAAGGAAAATAGAGAAAACAAAAGATTTCCATGCAAAAGAAAATC
260 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
*
3644981 ATCAATATCATTTATCCTAATG-AGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATATCT
325 ATCAATATCATTTATCCTAATGAAG-AGAATGTGCTTATAGTGCCTAATCACAAAATGAATATCA
* *
3645045 TTGCTAGAATCAATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAGGAAA
389 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAGGAAA
** ** * ** *
3645110 AATGCCTTTCTTGCGAAACCAAAGCATCCTTATTATGTATCCGAACAAGAAGACTATGTTTATGG
454 AATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGG
* * * ** *
3645175 TGCCTAATCCTGAAAAAAAATGGGGAATATTATGAGTATTCAGGTTTGTCTTATTTAAGAGACAA
519 TGCCTAATCCTG-AAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAGACAA
** * * *
3645240 ACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
583 ACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTA
* ** * * * **
3645305 TGTATCCTATTGAAAGGAATGTGTTTTTGGCTCCCAATCTTCAAAAGAACGGAGATTGTTACCAG
648 AGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAG
*
3645370 AATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
713 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* *
3645435 TTTCAGGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAAAGAATGTGCTTATAGTGCCTA
778 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGCCTA
* *
3645500 GTCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGA
843 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
** * *
3645565 CTTTACAAAAATTAATAGGAAAAATGCCTATCTTGCAAAAC
908 CTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAAC
* * * * *
3645606 CAAAGCATCCATATCGTGTGTCCTAACGAGAAGACTAGGTTTATGGTGCCAAATCCTGAAAAAAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG--AAAAA
* * * *
3645671 AATTGGGAATATTATGAGTATTCAAGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATAAAAA
64 AATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * *
3645736 ACGGTGGAAAGAAAAGTTTTTCTTGCCACACCAAAGCGTCAATGTCATGTATCCTATTAAAGGGA
129 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGA
* * * * *
3645801 ATGTGTTTTTGGTTCGCAATCTTGAAAAGAATGGATATTGTTACGAGTATCGGTGCTTATCTTAT
194 ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTAT
* * * * *
3645866 TTAAGGGATGAACTTTGATTTTAAGGAAAATATGGCAATGAAAAGATTTCAATACAAAATAAAAT
259 TTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * * *
3645931 CATCAGTATCATTTATCCTAATGAAGAGAATATGCTTATAATTCCTAATCATAAAATGAATGAAG
324 CATCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT----
* **
3645996 ATCATTACTAGAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
385 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAG
* * * *
3646061 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAGTGAGAAGACTATGTTT
450 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTT
* * * * * ** * * *
3646126 ATGGTGCCAAATCCTGAAAAAAAATGGGGAATAGAATAAGTATTCAAATTTGTCTTTTTTGAGAG
515 ATGGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAG
* * * * *
3646191 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAACA-CTTTTCTTGCAACAACAAAGCATCAA
579 ACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAA-AGCTTTTCTTGCGATACCAAAGCATCAA
* * * ** * * * ** *
3646255 AGTCATA-TATCTTATTGAATGGACTGCGTTTTTGACTCCCAATCATGAAAAGAATGGAGATTGT
643 TGTTA-AGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGT
* *
3646319 TA-GAAGAATCGATGCTTGTCTTATTTAAGCGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG
707 TATG-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
3646383 AAAAGATTTCCATGCAAAAGAAAATCAACAATTTCATTCATCC-AATTAAGGAGAATGTGCTTAT
771 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGAAGAATGTGC-T-T
* * * * *
3646447 ATAGTGCCTAATCATAAAATAAATGAAGATCACTACTAGAATCTATGTTTGTCTCATTTGGGGCA
833 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * * * *
3646512 TGAAATTAGACTATACAAAAAATGG-AGGGAAAAAAGCTTTTCTTTCGAAAC
898 CGAACTTAGACTTTACAAAAATTGGTA-GGAAAAATGCCTTTCTTGCGAAAC
* * * *
3646563 CAAAACATCATTGTCGTGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCCT-AAAAAGA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-A
* * * * * ** * * *
3646627 ATCGAGATTAGTATCACTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCCAAAA
65 ATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * * *
3646692 CGGTGGAATGAAAAGCTTTGCTTGCAACACCAAAGCATCAATATCACGTATCCTATTGATGGGAA
130 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA
* * * *
3646757 TGTGTTTTTGGTTCCCAATCTTGCAAAGAATGGAGATTCTTATGAGAATCGATGTTTGTCTTATT
195 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* *
3646822 TAAGGGATGAACTTTGATTTTACGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATC
260 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* *
3646887 ATCAATATTATTTATCCTAATG-AGAAAAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAG
325 ATCAATATCATTTATCCTAATGAAG-AGAATGTGCTTATAGTGCCTAATCACAAAATGAAT----
* * * * * *
3646951 ATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTGGACTATACAAAAATTAGCGG
385 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAG
* * * * * * *
3647016 GAAAAATACCTTTCTTGCGAAACAAAACCATCCATATCATGTATCC-AACTGAGAAGACTATATT
450 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA-TGAGAAGACCATGTT
* * * * **
3647080 TATGTTGCCTAATCCTGAAAAAAATGGGGAATATTATGAGTATTCAAGTTTGTCTTATTTAAGAG
514 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAG
* * *
3647145 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAAT
579 ACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAAT
* * * ** * *
3647210 GTCATGTATCTTATTGAAGGGAATGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTA
644 GTTAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTA
* *
3647275 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-GAGGCAAAAAA
709 TGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GGCAAAGAA
* * * * *
3647339 AAGATTTTCATGCAAAAGAAAATCATCAAAATCATTTATCCTATTGAGGAGAATGTGTTTATAAT
773 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGT
* * * * * * *
3647404 GCCTAATTACATAATGAAAGAAGATCTTTACTAGAATACAAGTTTGTCTCATTTGAGGCACAAAC
838 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* *
3647469 TTAGA-TATTATAAAAATTGGTAGGAAAAATGCCTTCCTTG-GAAAAC
903 TTAGACT-TTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCG-AAAC
* * * * *
3647515 CAAAGTATCAATATCATGTATCCTATTGAGAAGACCATTTTTATGGTGCCTAATCCT-AAAAATA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-A
* * * * * * *
3647579 ATGGAGATTAGTATAATTATACATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCAAAAA
65 ATGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
*
3647644 CGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA
130 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA
* *
3647709 TGTGTTTTTGGCTCCCAATCATGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
195 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* * * *
3647774 TACGGGATGAACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC
260 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * *
3647839 ATCAACATCATTCATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATAAATGAAGA
325 ATCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTGCCTAATCAC---A-AAATGAATA
* * **
3647904 TCATTACTAGAATCCATGTTTTTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGG
386 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAGG
*** * * *
3647969 AAAAATTAATTTCTTGCGAAAGCAAAGCATCAATATCGTGTATCGTAATGAGAAAACCATGTTTA
451 AAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTA
* * * * *
3648034 TGGTGCCTAATCCTGAAATGAATTGGGATTAGTATGACAATTCATGTTTATCTTATTTAAGAGTT
516 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAG-A
* * *
3648099 TAAA-TGTTGATTCCATCAAAAACT-GTGGAAATAAAAGCTTTTCTTGCGATGCCAAAGCATCAA
580 CAAACT-TTGATTCCATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAA
*
3648162 TGTTAAGCATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTT
643 TGTTAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTT
* **
3648227 ATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGAAAAAGAA
708 ATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * *
3648292 AAGATTTTCATGCTAAAGAAAATTATCAATATCGTTTATCCTAATGAGAAGAATGTGCTTCTAGT
773 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGT
* * *
3648357 GCCTAATCACAAAATGAATGAAGATCATTATTAGAATCAATGTTTGGCTCATTTGAGGCACGAAC
838 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * * *
3648422 TTAGACTTTACAAAAATTGGT-GAAAAAATGCCTTTTTTACGAGAC
903 TTAGACTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAAC
* * * * *
3648467 CAAAGCATCAATATCGTGTATCCTAATGAGAAGAATAGGTGTATGGTGCCTAATCCAGAAAAGAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
* * * * ** * *
3648532 TAGGGATTGGTATGAATATTCCTGTTTGACTTATTTAAGAGACAAACTTTGTTTCTATCAAAAAC
66 TGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* ** *
3648597 GGTGGAAATAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTGTGTATCCTATTGAACGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT
* * * * * * * * *
3648662 GTGTTTTAGGTTCCTAATCCTGAAAATAATGGAGACTGCTAGGAGAATCAATGCTCGTCTTATTT
196 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* * * * * ** **
3648727 AAGGGATGAACTTTGATTATAAAGAAAATAGGGCAAAGAAAAGATATCCATGCTACACCAAGGCA
261 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * * * * * * * *
3648792 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCT-CCCAATCTTGAAAAGAACGGAGA
326 TCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAG-TGCCTAATC---ACAA-AATGAATA
** * ** * * * * * * ****
3648856 TTGTT-GTGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGTCTCTTA-AATAAGACAAA
386 TCATTACT-AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACT-TTACAA-AA-ATTGG
* * *
3648919 CATGAATACTCATCCTAATCCCCATTCTTTTCAAGATTAG-GATAGAATCAAAGCATCAATATCG
447 CA-GGA-A---A----AAT--GC---C-TTTC----TT-GCG--A-AACCAAAGCATCAATATCG
* * * * *
3648983 CGTATCCTAAAGAGAAGACCATGTTTACGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGGC
489 TGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
3649048 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAGTGGTGGAAAGAATAGCT
554 AATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCT
* * * ** * ** *
3649113 TATCTTGCGATACCAAAGCATCAATGTCATGTATCCTAGTG-AAGAGAATGTATTTCAGGTTCCT
619 TTTCTTGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGAAAG-GAATGTGTTTTTGGTTCCC
* * * * * *
3649177 AATCCTAAAAATAATGGAGACTGCTATGAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTG
683 AATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * * * *
3649242 ATTTTAAGGAAAATAAGGCAAACAAAA-ATTTCCATGTAAAAGAAAATCATCAATATAATTCATT
748 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
3649306 CTAATGAGGAGAATGTGCTTATAATGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
813 CTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
** *
3649371 TGTTTACCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GTGGAAAATG-CTTTCTT
878 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAG-GAAAAATGCCTTTCTT
*
3649434 GTGAAAC
942 GCGAAAC
* * * * * * *
3649441 CAAAACATTAATATTGCGTATCCTAATGAGAAGACCATGTTTATGTTGCCTAATCCTGAAAAGAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
* * ** * * * * *
3649506 TGAGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCCATTAAAAAG
66 TGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * ** *
3649571 GGTAGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGAAAGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT
** * *
3649636 GCATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTATCTTATTT
196 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
** *
3649701 AAGGGATGAACTTTGATTTTAAGGAAAATATAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCT
261 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
*
3649766 TCAATATCATTTATCCTAATGATA-AGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAAA
326 TCAATATCATTTATCCTAATGA-AGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT----A
* *
3649830 TCATTACTAGAATCCATTGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGCAG
386 TCATTACTAGAATCCA-TGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAG
* * * * *
3649895 GAAAAATGCCTTCCTTACGAAACCAAAGCATCCATATCTTGTATCCTAATGAGAAGACTATGTTT
450 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTT
* * *
3649960 ATGTTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGA
515 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAGA
* * * * *
3650025 CGAACTTTGATTCCATCAAAAACGATAGAAAAAAAAGCTTTTCTTGCGATACCAAAGCATCAATG
580 CAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATG
**
3650090 TTAAGTATCCTAAAGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAT
645 TTAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAT
* *
3650155 AAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAA
710 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * *
3650220 GATTTCCATGCAAAAGAAAATCTTCAATATCTTTTATCCTAATGAGAAGAATGTGCTTATAGTGC
775 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGC
* * *
3650285 CTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCAT-ATTTCAGGCATGAACT
840 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACT
* * * *
3650349 TAGACTTTACAAAAATTGGCAGGAAAAATACCTTCCTTGCGAAGC
904 TAGACTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAAC
* * * *
3650394 CAAAGCATCCATATCGTGTATCCTACTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAATAAT
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
* * *
3650459 TGGGGAATATTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAT
66 TGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * *
3650524 GGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGCCATGTATCCTATTGAAAGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT
* * * * *
3650589 ATGTTTTTGGCTCCCAATCTTGAAAAGAATGGAAATTTTTATGAGAATCGATGCTTGTCTTATTT
196 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* *
3650654 AAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCA
261 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* ** * *
3650719 TTAATATCATTTATCCTGTTGAGGAGAATGTGTTTATAGCT-CCTAATCACAAAATGAATGAAGA
326 TCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAG-TGCCTAATCACAAAATGAAT----A
* * ** *
3650783 TCAATACTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGG-TGT
386 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAG-
* ** * * * *
3650847 GGAAAATGCCTTTCTTATGAAACCAAAACATTAATATTGCGTATCCTAATGAGAAGACCATGTTT
450 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTT
* *
3650912 ATGGTGCCTAATCCAGAAAAGAAT-GGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGA
515 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAGA
* * * *
3650976 CAAACTTTGATTCCATAAAAAACGGTGGAAATAAAAGCTTTTCTTGTGATACCAAAGCATCAATG
580 CAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATG
* ** *
3651041 TTAAGTATTCTAAAGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAC
645 TTAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAT
* * * * * * *
3651106 GAGAATCAATGCTAGTCTTATTTAAGAGATAAACTCTAATTTTAAGGAAAATATGGCAAAGAAAA
710 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
3651171 GATTTTCAGGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAAAAGAATGTGGTTATAATGC
775 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGC
* * * * *
3651236 CTAGTCACAAAATGAATGAAGATCATTACCT-GAATCTATGTTTGTCTCGTTTGAAGCATGAACT
840 CTAATCACAAAATGAATGAAGATCATTA-CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * *
3651300 TAGACTTTTCAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAAC
904 TAGACTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAAC
** * * ** *
3651345 CAAAGCATCAATATTTTGTATCCTAGTAAGAAGAAC-AACTTTATGGTGCCTAATCCTGAAAAGA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAAA
* * * * *
3651409 ATGGGGATTAGTATGAGTATT--AGTGCTTGTCTTATATAAGAGATAAACTTTGATCCTAACAAA
65 ATGGGGAATAGTATGAGTATTCAAGT--TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
** * **
3651472 AACGGTGGAAAGCGAAGCTTTTCTTGCAACACCAAAGTGTCAATGTCATGTATCCTATTGAAGGG
128 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGG
* * * *
3651537 ACTGTGTTTTTTGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGGTTGTCTTA
193 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTA
* * * * *
3651602 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAACAGATTTCCAGGGAAAAGAAAG
258 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
3651667 TCATCATTATCATTTATCCTAATGAAAAGAATGTGCTTATATTGCCTAATCACAAAATGAAGGAA
323 TCATCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTGCCTAATCACAAAAT----GAA
* * * * *
3651732 GATCATTACTAGAATCTATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGG-T
384 TATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCA
* * *
3651796 GTGAAAAATGCCTTTCTTGCGAAACCAAAGCGTCCATATCGTGTATCCTAATGAGAAGACTATGT
449 G-GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGT
* * * ** *
3651861 TTATGGTGCCTAATCCTGAAAAAAATGGGGAATATTATGAGTATTCAAGTTTGTCTTTTTTAAGA
513 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGA
* * * *
3651926 CACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAATACCAAAGCATTAA
578 GACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAA
* ** * * * *
3651991 TGTCT-TGTATCCTATTGAAGGGAATGTGTTTTTGGTTTCCAATCTTGAAATGAATGGAGATTGC
643 TGT-TAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGT
* *
3652055 TATGAGAATCGATGCTTATCTTATTTAAGGGATCAACTTTGATTTTAAGGAAAATAGGGCAAAGA
707 TATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
3652120 AAAGA-TTTCGATACAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATA
772 AAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATA
* *
3652184 GTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACGA
836 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* *
3652249 ACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAATC
901 ACTTAGACTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAA-C
* * * * ** *
3652298 GAAA-CATCAAAATCGCGTATCCTAATGAGAAGACTATGCTTATGGCACCTAATCTTGAAAAAAA
1 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
* * * * ** *
3652362 CGGGGAATAGAATGAGTTTTCAAGTTTGTCTTTTTTGCGGGACAAACTTTGATTCTATCAAAAAC
66 TGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * *
3652427 GGTGGAAA-AAATGCTTTTCTTGCGAGACCAAAGCATCAAAGTCATGTATCCTATTGAACGGACT
131 GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT
* * * *
3652491 TTGTTTTTGGCTCCCAATC-AGTAAAAGAATGGAGATTGTTACGAGAATCCATGCTTGTCTTATT
196 GTGTTTTTGGTTCCCAATCTTG-AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATT
* * * *
3652555 TAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCGTGCAAAAAAAAATC
260 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * * * *
3652620 ATCAATATCATTCATCCTTATGAGGAGAATGTGCTTATAGCGCCTAATCAAAAAATAAAAGAAGA
325 ATCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTGCCTAATCACAAAAT----GAATA
** * *** *
3652685 TTGTTACTAGAATCCATGTTTTTCTCATTTGAGGTGCGAACTTAGACTTTACAAAAATTAG-AGG
386 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCA-G
* * *
3652749 GAAAAATGCCTTTCTTGCGAAAGCAAAGCATTAATATCATGTATCCTAATGAGAAGACCATGTTT
450 GAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTT
* * * *
3652814 CTGGTGCCTAATCCAGAAAAGAATTGGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGA
515 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAGA
** ** * * * **
3652879 CAAACTTTGATTCCATCAAAAATTATAAAAAGAAAAGCTTTTCTTGTGACAACAAAGCATTGATG
580 CAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATG
* * * *
3652944 TTAAGTATCCTAAAGAAATGAATGTGTTTTTCGTTCACAATCTTGAAAAGAATGGAGATTGTTAC
645 TTAAGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAT
* *
3653009 GAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
710 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * *
3653074 GATTTCCACGCTAAAGAAAATCAT--A-A--A--TAT-C-------------GT--TTATAGTGC
775 GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGC
* *
3653116 CTAATCA-ATAAAAGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGCACGAACT
840 CTAATCACA-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* *
3653180 TAGACTTTACAAAAATT-G-ACGAGAAAAATGCCTTTCTTGCGAGAG
904 TAGACTTTACAAAAATTGGTA-G-GAAAAATGCCTTTCTTGCGAAAC
*
3653225 GAAAGCATCAATAT
1 CAAAGCATCAATAT
3653239 TGTGCGAAGA
Statistics
Matches: 8233, Mismatches: 1142, Indels: 320
0.85 0.12 0.03
Matches are distributed among these distances:
927 7 0.00
928 113 0.01
930 2 0.00
935 362 0.04
936 1 0.00
937 7 0.00
938 45 0.01
939 6 0.00
941 4 0.00
943 2 0.00
944 5 0.00
945 126 0.02
946 182 0.02
947 217 0.03
948 25 0.00
949 476 0.06
950 305 0.04
951 1944 0.24
952 1671 0.20
953 685 0.08
954 285 0.03
955 804 0.10
956 11 0.00
957 147 0.02
958 3 0.00
959 2 0.00
962 1 0.00
963 3 0.00
964 3 0.00
968 1 0.00
969 4 0.00
970 4 0.00
971 4 0.00
972 2 0.00
973 7 0.00
974 471 0.06
975 196 0.02
976 100 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (948 bp):
CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
TGGGGAATAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT
GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
TCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATATCATT
ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAGGAAAAA
TGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTG
CCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCAAGTTTGTCTTATTTAAGAGACAAACT
TTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTAAGT
ATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAAT
CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGCCTAATC
ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
TACAAAAATTGGTAGGAAAAATGCCTTTCTTGCGAAAC
Found at i:3647183 original size:476 final size:476
Alignment explanation
Indices: 3643250--3653238 Score: 12027
Period size: 476 Copynumber: 21.0 Consensus size: 476
3643240 TTGCAAAACT
*
3643250 TGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-AATGGGGATTAGTATGA
** * * *
3643314 CAATTCAATTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACT-ATGGAAAGAAAAG
65 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAG
* * * * * *
3643378 CTTTTCCTACGATACCAAAGCATCAATGTTAAGTATCCTGA-AGAAAGGAATGTGTTTTTGGTTC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATTGAAAGGAATGTGTTTTTGGTTC
* *
3643442 CCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCGATGCTTGTCTTATTTAAGGGATAAACTT
193 CCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
3643507 TGATTTTATGGAAAATAGGGTAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTA
258 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * * *
3643572 TCCTATTGAGAAGAATATGCTTATAGTGCCTAATCACAGAATTAATGAAGATC-TTCGCTAGAAT
323 TCCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT-ACTAGAAT
* *
3643636 CCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGCGGG-AAAATGCCTTTC
387 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* *
3643700 TTGTGAAACCAAAGCATCCATATCG
452 TTGCGAAACCAAAGCATCAATATCG
** * * * *
3643725 TGTATCCTAACAAGAAAACTATGTTTATGGTGCCTAA-CCTAAAAAAAACGGGGAATAGTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* *
3643789 TATTCAAGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * * * *
3643854 TTTCTTGTGACACCAAAGCATCAGTGTCATTTATCCTAAT-AAAGGGAATGTGTTTTAGGTTCTC
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAA-GGAATGTGTTTTTGGTTCCC
** * * * ** *
3643918 AATCCAGAAAATAATGGAGACTGCTATGAGAATCGATGCTCATCTTATTTAAGGGATTAACTTTG
195 AATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * *
3643983 ATTATAAGGAAAATAGGGAAAAGAAAAGATTTCTAAGCAAAAGAAAATCTTCAATATCATTTATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * *
3644048 CTAATTAGGAGAATGTGCTTATAG-GACCTAATCACGAAATGAATGAAGATCAATACCAGAATCT
325 CTAATGAGAAGAATGTGCTTATAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * ** * **
3644112 ACGTTTGTCTCATTTGAGGCAGGAACTTAGACTTTACAAAAATTCTTATGG-AAAATAACTTTCT
389 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATGCCTTTCT
* *
3644176 TGCGAATCCAAAGCATTAATATCG
453 TGCGAAACCAAAGCATCAATATCG
* * *
3644200 CGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCT-AAAAAGAATAGGGATTAGTATGA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-AATGGGGATTAGTATGA
** * * * *
3644264 CAATTCAATTTTGTGTTATTTAGGAGACAAACTTTGATTCCATCAAAAACT-GTGGAAAGAAAAG
65 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAG
* ** * * * * **
3644328 CTTTTCCTATGATACCAAAGCATCAATGTTAAGTATCTTAAAGAAAGGAATGTGTTTTTGGTTCC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCC
* *
3644393 TAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAAC-TT
194 CAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* *
3644457 GACTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTAT
259 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * ** *
3644522 CCTAATGAGAAGAATGTGCTTATTGTGCTTAATCACAAAATGAATGAAGATTTTTGCTAGAATCC
324 CCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
**
3644587 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCAGGAAAAATGCCTTTCTT
389 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
* * *
3644652 GCAAAACCAATGCATCCATATCG
454 GCGAAACCAAAGCATCAATATCG
* * * *
3644675 TGTATCCGAATAAGAA-ACTATGTTTATGGTGCCTAATCTTG-AAAAAATGGGGAATAGTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* *
3644738 TATTCAAGTTTTTCTTATTTAAGAGACCAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* ** * * * * *
3644803 TTTCTTGTGACACCAAAGCATCGGTGTCATTTATCCTAATGAAGGGAATGTGTTTTAGGTTCTCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
* * * * * * * *
3644868 ATCCAT-AAAATAATGGAGATTGCTACGAGAATCGAAGCTCGTCTCATTTAAGGGATTAACTTTG
196 AT-CTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * *
3644932 ATTATAAGGAAAATAGAGAAAACAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
3644997 CTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT----ATCTTTGCTAGAATCAA
325 CTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* **
3645058 TGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCAGGAAAAATGCCTTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
** **
3645123 CGAAACCAAAGCATCCTTATTA
455 CGAAACCAAAGCATCAATATCG
* ** * *
3645145 TGTATCCGAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAATGGGGAATATTATGA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAAAATGGGGATTAGTATGA
* *
3645210 GTATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGC
65 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
* *
3645275 TTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGCTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCC
* * ** *
3645340 AATCTTCAAAAGAACGGAGATTGTTACCAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTG
195 AATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* *
3645405 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAGGCAAAAGAAAATCATCAATATCATTTATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
3645470 CTAATGAAAAGAATGTGCTTATAGTGCCTAGTCACAAAATGAATGAAGATCATTACTAGAATCTA
325 CTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
** * *
3645535 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAATAGGAAAAATGCCTATCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* *
3645600 CAAAACCAAAGCATCCATATCG
455 CGAAACCAAAGCATCAATATCG
* * * * * * *
3645622 TGTGTCCTAACGAGAAGACTAGGTTTATGGTGCCAAATCCTGAAAAAAAAATTGGGAATATTATG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG--AAAAAAATGGGGATTAGTATG
* * *
3645687 AGTATTCAAGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAG
64 AGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* * *
3645752 TTTTTCTTGCCACACCAAAGCGTCAATGTCATGTATCCTATT-AAAGGGAATGTGTTTTTGGTTC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAA-GGAATGTGTTTTTGGTTC
* * * * * *
3645816 GCAATCTTGAAAAGAATGGATATTGTTACGAGTATCGGTGCTTATCTTATTTAAGGGATGAACTT
193 CCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
3645881 TGATTTTAAGGAAAATATGGCAATGAAAAGATTTCAATACAAAATAAAATCATCAGTATCATTTA
258 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * *
3645946 TCCTAATGA-AGAGAATATGCTTATAATTCCTAATCATAAAATGAATGAAGATCATTACTAGAAT
323 TCCTAATGAGA-AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
3646010 CCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
387 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
*
3646075 TTGCGAAACCAAAACATCAATATCG
452 TTGCGAAACCAAAGCATCAATATCG
* * * * * *
3646100 CGTATCCTAGTGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAAAAATGGGGAATAGAATAA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAAAATGGGGATTAGTATGA
* * * *
3646165 GTATTCAAATTTGTCTTTTTTGAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAACA-
65 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA-AG
* * * * * * * * **
3646229 CTTTTCTTGCAACAACAAAGCATCAAAGTCATATATCTTATTGAATGGACTGCGTTTTTGACTCC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCC
* *
3646294 CAATCATGAAAAGAATGGAGATTGTTA-GAAGAATCGATGCTTGTCTTATTTAAGCGATGAACTT
194 CAATCTTGAAAAGAATGGAGATTGTTATG-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
3646358 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATTTCATTCA
258 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * * *
3646423 TCC-AATTAAGGAGAATGTGCTTATATAGTGCCTAATCATAAAATAAATGAAGATCACTACTAGA
323 TCCTAA-TGAGAAGAATGTGC-T-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * * * * * *
3646487 ATCTATGTTTGTCTCATTTGGGGCATGAAATTAGACTATACAAAAAATGGAGGGAAAAAAGCTTT
385 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * *
3646552 TCTTTCGAAACCAAAACATCATTGTCG
450 TCTTGCGAAACCAAAGCATCAATATCG
* * * *
3646579 TGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCCT-AAAAAGAATCGAGATTAGTATCA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-AATGGGGATTAGTATGA
* ** * * * * *
3646643 CTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCCAAAACGGTGGAATGAAAAGC
65 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
* * * * **
3646708 TTTGCTTGCAACACCAAAGCATCAATATCACGTATCCTATTGATGGGAATGTGTTTTTGGTTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCC
* * *
3646773 AATCTTGCAAAGAATGGAGATTCTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTG
195 AATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * *
3646838 ATTTTACGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATTATTTATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* *
3646903 CTAATGAGAAAAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCACTACTAGAATCCA
325 CTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * * *
3646968 TGTTTGTCTCATTTGAGGCATGAATTTGGACTATACAAAAATTAGCGGGAAAAATACCTTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* * * *
3647033 CGAAACAAAACCATCCATATCA
455 CGAAACCAAAGCATCAATATCG
* * * *
3647055 TGTATCC-AACTGAGAAGACTATATTTATGTTGCCTAATCCTGAAAAAAATGGGGAATATTATGA
1 TGTATCCTAA-TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGA
3647119 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
65 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
* * * *
3647184 TTTTCTTGCGACACCAAAGCATAAATGTCATGTATCTTATTGAAGGGAATGTGTTTTTGGCTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCC
*
3647249 AATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
195 AATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * *
3647314 ATTTTAAGGAAAAT-GAGGCAAAAAAAAGATTTTCATGCAAAAGAAAATCATCAAAATCATTTAT
260 ATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * * * * * *
3647378 CCTATTGAGGAGAATGTGTTTATAATGCCTAATTACATAATGAAAGAAGATCTTTACTAGAATAC
324 CCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
3647443 AAGTTTGTCTCATTTGAGGCACAAACTTAGA-TATTATAAAAATTGGTAGGAAAAATGCCTTCCT
389 ATGTTTGTCTCATTTGAGGCACGAACTTAGACT-TTACAAAAATTGGTGGGAAAAATGCCTTTCT
* *
3647507 TG-GAAAACCAAAGTATCAATATCA
453 TGCG-AAACCAAAGCATCAATATCG
* * * * *
3647531 TGTATCCTATTGAGAAGACCATTTTTATGGTGCCTAATCCT-AAAAATAATGGAGATTAGTATAA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA-AATGGGGATTAGTATGA
* * * * *
3647595 TTATACATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCAAAAACGGTGGAAAGAAAAGC
65 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
* * *
3647660 TTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCC
* * *
3647725 AATCATGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTACGGGATGAACTTTG
195 AATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * *
3647790 ATTTTAAAGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTCATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* *
3647855 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCA
325 CTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * ***
3647920 TGTTTTTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATTAATTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
*
3647985 CGAAAGCAAAGCATCAATATCG
455 CGAAACCAAAGCATCAATATCG
* * * ** * *
3648007 TGTATCGTAATGAGAAAACCATGTTTATGGTGCCTAATCCTGAAATGAATTGGGATTAGTATGAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* * * ** * *
3648072 AATTCATGTTTATCTTATTTAAGAGTTTAAA-TGTTGATTCCATCAAAAACT-GTGGAAATAAAA
66 TATTCAAGTTTGTCTTATTTAAGAG-ACAAACT-TTGATTCTATCAAAAA-TGGTGGAAAGAAAA
** * * * **
3648135 GCTTTTCTTGCGATGCCAAAGCATCAATGTTAAGCATCCTAAAGAAAGGAATGTGTTTTTGGTTC
128 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTC
*
3648200 CCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTT
193 CCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
** * * * *
3648265 TGATTTTAAGGAAAATAGGAAAAAGAAAAGATTTTCATGCTAAAGAAAATTATCAATATCGTTTA
258 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* *
3648330 TCCTAATGAGAAGAATGTGCTTCTAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATC
323 TCCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
3648395 AATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GAAAAAATGCCTTTTT
388 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* *
3648459 TACGAGACCAAAGCATCAATATCG
453 TGCGAAACCAAAGCATCAATATCG
* * * * * * * *
3648483 TGTATCCTAATGAGAAGAATAGGTGTATGGTGCCTAATCCAGAAAAGAATAGGGATTGGTATGAA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
** * * * *
3648548 TATTCCTGTTTGACTTATTTAAGAGACAAACTTTGTTTCTATCAAAAACGGTGGAAATAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
** * * *
3648613 TTTCTTGCGACACCAAAGCATCAATGTTGTGTATCCTATTGAACGGAATGTGTTTTAGGTTCCTA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
* * * * * * *
3648678 ATCCTGAAAATAATGGAGACTGCTAGGAGAATCAATGCTCGTCTTATTTAAGGGATGAACTTTGA
196 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * * * ** ** * *
3648743 TTATAAAGAAAATAGGGCAAAGAAAAGATATCCATGCTACACCAAGGCATCAATGTCATGTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * ** * * ** *
3648808 TAATGA-AGGGAATGTGTTTTTGGCT-CCCAATCTTGAAAA-GAACGGAGATTGTT-GTGAGAAT
326 TAATGAGA-AGAATGTGCTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCATTACT-AGAAT
** * * * * * * * * **** *
3648869 TGATGCTTGTCTTATTTAAGGGATGAACTTTGTCTCTTAAATAAGACAAACAT-GAATACTCATC
387 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACT-TTACA-AA-A-ATTGGTGGGA-A---A--
* *
3648933 CTAATCCCCATTCTTTTCAAGATTAG-GATAGAATCAAAGCATCAATATCG
442 --AAT--GC---C-TTTC----TT-GCG--A-AACCAAAGCATCAATATCG
* * * * * *
3648983 CGTATCCTAAAGAGAAGACCATGTTTACGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATG-G
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* * *
3649047 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAGTGGTGGAAAGAATAGC
66 -TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
* * * * **
3649112 TTATCTTGCGATACCAAAGCATCAATGTCATGTATCCTAGTG-AAGAGAATGTATTTCAGGTTCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAG-GAATGTGTTTTTGGTTCC
* * * * * * *
3649176 TAATCCTAAAAATAATGGAGACTGCTATGAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTT
194 CAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * * * *
3649241 GATTTTAAGGAAAATAAGGCAAACAAAA-ATTTCCATGTAAAAGAAAATCATCAATATAATTCAT
259 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * *
3649305 TCTAATGAGGAGAATGTGCTTATAATGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
324 CCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
**
3649370 ATGTTTACCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGTGG-AAAATG-CTTTCT
389 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAAAAATGCCTTTCT
* * * *
3649433 TGTGAAACCAAAACATTAATATTG
453 TGCGAAACCAAAGCATCAATATCG
* * * * * *
3649457 CGTATCCTAATGAGAAGACCATGTTTATGTTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* * * * * * *
3649522 AATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCCATTAAAAAGGGTAGAAAGAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * ** **
3649587 TTTCTTGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGAAAGGAATGCATTTTTGGTTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
*
3649652 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTGA
196 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
** *
3649717 TTTTAAGGAAAATATAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCTTCAATATCATTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * *
3649782 TAATGATAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAAATCATTACTAGAATCCAT
326 TAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-
* ** * *
3649847 TGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGCAGGAAAAATGCCTTCCTTA
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* *
3649912 CGAAACCAAAGCATCCATATCT
455 CGAAACCAAAGCATCAATATCG
* * * *
3649934 TGTATCCTAATGAGAAGACTATGTTTATGTTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* * * * * * * *
3649999 AATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCCATCAAAAACGATAGAAAAAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * ** **
3650064 TTTCTTGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGAAAGGAATGCATTTTTGGTTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
*
3650129 ATCTTGAAAAGAATGGAGATTGTTATAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
196 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * *
3650194 TTTTAAGGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCTTCAATATCTTTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
*
3650259 TAATGAGAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCAT
326 TAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * ** * *
3650324 GTTTGTCAT-ATTTCAGGCATGAACTTAGACTTTACAAAAATTGGCAGGAAAAATACCTTCCTTG
391 GTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* *
3650388 CGAAGCCAAAGCATCCATATCG
455 CGAAACCAAAGCATCAATATCG
* * * * *
3650410 TGTATCCTACTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAATAATTGGGGAATATTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
*
3650475 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * *
3650540 TTTCTTACGACACCAAAGCATCAATGCCATGTATCCTATTGAAAGGAATATGTTTTTGGCTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
* * *
3650605 ATCTTGAAAAGAATGGAAATTTTTATGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGA
196 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* *
3650670 TTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATTAATATCATTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
** * * *
3650735 TGTTGAGGAGAATGTGTTTATAGCT-CCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
326 TAATGAGAAGAATGTGCTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* *
3650799 TGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGTGG-AAAATGCCTTTCTT
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAAAAATGCCTTTCTT
** * * *
3650863 ATGAAACCAAAACATTAATATTG
454 GCGAAACCAAAGCATCAATATCG
* * * * *
3650886 CGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCAGAAAAGAAT-GGGATTAGTATGAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* * * * * *
3650950 AATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGTGGAAATAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * * * ** **
3651015 TTTCTTGTGATACCAAAGCATCAATGTTAAGTATTCTAAAGAAAGGAATGCATTTTTGGTTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
* * * * * * *
3651080 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCAATGCTAGTCTTATTTAAGAGATAAACTCTAA
196 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
3651145 TTTTAAGGAAAATATGGCAAAGAAAAGATTTTCAGGCAAAAGAAAATCATCAATATCGTTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * *
3651210 TAATGAAAAGAATGTGGTTATAATGCCTAGTCACAAAATGAATGAAGATCATTACCT-GAATCTA
326 TAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA-CTAGAATCCA
* * * *
3651274 TGTTTGTCTCGTTTGAAGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCTTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* **
3651339 TGAAACCAAAGCATCAATATTT
455 CGAAACCAAAGCATCAATATCG
* * ** *
3651361 TGTATCCTAGTAAGAAGAAC-AACTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
1 TGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGA
* * * * * **
3651425 GTATT--AGTGCTTGTCTTATATAAGAGATAAACTTTGATCCTAACAAAAACGGTGGAAAGCGAA
65 GTATTCAAGT--TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAA
* ** * * * *
3651488 GCTTTTCTTGCAACACCAAAGTGTCAATGTCATGTATCCTATTGAAGGGACTGTGTTTTTTGCTC
128 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTC
* *
3651553 CCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGGTTGTCTTATTTAAGGGATGAACTT
193 CCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
3651618 TGATTTTAAGGAAAATAAGGCAAAGAACAGATTTCCAGGGAAAAGAAAGTCATCATTATCATTTA
258 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * *
3651683 TCCTAATGAAAAGAATGTGCTTATATTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATC
323 TCCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * *
3651748 TATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGTGAAAAATGCCTTTCT
388 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* *
3651813 TGCGAAACCAAAGCGTCCATATCG
453 TGCGAAACCAAAGCATCAATATCG
* *
3651837 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGAATATTATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* *
3651902 TATTCAAGTTTGTCTTTTTTAAGACACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * * * *
3651967 TTTCTTGCAATACCAAAGCATTAATGTCTTGTATCCTATTGAAGGGAATGTGTTTTTGGTTTCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
* * * *
3652032 ATCTTGAAATGAATGGAGATTGCTATGAGAATCGATGCTTATCTTATTTAAGGGATCAACTTTGA
196 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* *
3652097 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCGATACAAAAGAAAATCATCAATATCATTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * *
3652162 TAGTGAGGAGAATGTGCTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
326 TAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* *
3652227 GTTTGTCCCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGC
391 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* *
3652292 GAAATCGAAA-CATCAAAATCG
456 GAAA-CCAAAGCATCAATATCG
* * ** * * * *
3652313 CGTATCCTAATGAGAAGACTATGCTTATGGCACCTAATCTTGAAAAAAACGGGGAATAGAATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* * ** * * *
3652378 TTTTCAAGTTTGTCTTTTTTGCGGGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAATGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * * * * *
3652442 TTTCTTGCGAGACCAAAGCATCAAAGTCATGTATCCTATTGAACGGACTTTGTTTTTGGCTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
* * *
3652507 ATC-AGTAAAAGAATGGAGATTGTTACGAGAATCCATGCTTGTCTTATTTAAGGGATGAACTTTG
196 ATCTTG-AAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * *
3652571 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCGTGCAAAAAAAAATCATCAATATCATTCATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * * **
3652636 CTTATGAGGAGAATGTGCTTATAGCGCCTAATCAAAAAATAAAAGAAGATTGTTACTAGAATCCA
325 CTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* ** * *
3652701 TGTTTTTCTCATTTGAGGTGCGAACTTAGACTTTACAAAAATTAGAGGGAAAAATGCCTTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* * *
3652766 CGAAAGCAAAGCATTAATATCA
455 CGAAACCAAAGCATCAATATCG
* * * * * *
3652788 TGTATCCTAATGAGAAGACCATGTTTCTGGTGCCTAATCCAGAAAAGAATTGGGATTAGTATGAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
* * * ** **
3652853 AATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATTATAAAAAGAAAAGCT
66 TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
* * ** * * ** * * *
3652918 TTTCTTGTGACAACAAAGCATTGATGTTAAGTATCCTAAAGAAATGAATGTGTTTTTCGTTCACA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
* * *
3652983 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGA
196 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* *
3653048 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCTAAAGAAAATCAT--A-A--A--TAT-C
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* *
3653105 -------------GT--TTATAGTGCCTAATCA-ATAAAAGAATGAAGATCATTACTAGAATCCT
326 TAATGAGAAGAATGTGCTTATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCA
** *
3653154 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGACGAGAAAAATGCCTTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* **
3653219 CGAGAGGAAAGCATCAATAT
455 CGAAACCAAAGCATCAATAT
3653239 TGTGCGAAGA
Statistics
Matches: 8211, Mismatches: 1182, Indels: 264
0.85 0.12 0.03
Matches are distributed among these distances:
452 1 0.00
453 113 0.01
455 2 0.00
468 1 0.00
469 2 0.00
470 111 0.01
471 25 0.00
472 3 0.00
473 466 0.06
474 735 0.09
475 1479 0.18
476 2921 0.36
477 1122 0.14
478 677 0.08
479 162 0.02
480 1 0.00
481 4 0.00
482 1 0.00
483 1 0.00
487 3 0.00
488 3 0.00
489 1 0.00
492 2 0.00
493 3 0.00
495 3 0.00
496 1 0.00
497 6 0.00
498 9 0.00
499 88 0.01
500 265 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAG
TATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCCA
ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
TAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
GAAACCAAAGCATCAATATCG
Found at i:3654473 original size:476 final size:477
Alignment explanation
Indices: 3653245--3655496 Score: 3001
Period size: 476 Copynumber: 4.7 Consensus size: 477
3653235 ATATTGTGCG
*
3653245 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAATAAGAAGAATGTGCTT
1 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAATGAGAAGAATGTGCTT
* * * *
3653310 ATAATGCCTAATCACAAAATGAATTAAGATCGTTACAAGAATCCTTGTTTGTCTCATTTGAGGTA
66 ATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGAA
* * * *
3653375 CAAACTTAGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTTTAAAACGAAAACATCAATAT
131 CAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATAT
* * * *
3653440 CGTATATCCTAATGGGAAGACCTTGTTTATGGTGCCTAATCCTAAAAGGAATGGAGATTAGTATG
196 CATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATG
* * *
3653505 AGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAATGGTGAAAAGAAAAG
261 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
*
3653570 CTTTTCTTGA-GACACCAAAGC-ATCAATGTCAAGTATCCTAAAAAAAGGATTGTGTTTTAGGTT
326 CTTTTCTT-ACGACACCAAAGCAATCAATGTCAAGTATCCTAAAGAAAGGATTGTGTTTTAGGTT
* * * ** *
3653633 CCCAATCCTAAAAATATTGGAGACTGTAACAAGAATCGAGGCTTGTCTTATTTAAGGGATGAACT
390 CCCAATCTTGAAAATAATGGAGACTGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
*
3653698 ATGATTTTAAGGAAAATAGAGCA
455 ATGATTTTAAGGAAAATAGGGCA
* *
3653721 AAGAAAAGATTTCCATGCAAAAAAAAAATCATCAATATGATTTATCCTAATGAGGAGAATGTGCT
1 AAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATGATTTATCCTAATGAGAAGAATGTGCT
* * * **
3653786 TATAATGCCTAATCAAAAAATGAATGAAGATCGTTACTAGAATCCTTGTTTGTCTCATTTAAGTC
65 TATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGA
* * * *
3653851 ACAAACATAGACTTTACAAAAATTGGTGTGAAAAATGCCTTTCTTATGAAACCAAAACATAAATA
130 ACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATA
*
3653916 TCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTAT
195 TCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
* * * *
3653981 GAGTATTTAGGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAA
260 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
3654046 GCTTTTCTTACGACACCAAAGCAAT-AATGTCAAGTATCCTAAAGAAAGGATTGTGTTTTAGGTT
325 GCTTTTCTTACGACACCAAAGCAATCAATGTCAAGTATCCTAAAGAAAGGATTGTGTTTTAGGTT
* * * * *
3654110 CCTAATCTTGAAAATATTAGAGACAGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATT
390 CCCAATCTTGAAAATAATGGAGACTGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* *
3654175 ATGATTCTGAGGAAAATAGGGCA
455 ATGATTTTAAGGAAAATAGGGCA
* * * *
3654198 AAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTAATCCCAATGAGAAGAATGTGCTT
1 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAATGAGAAGAATGTGCTT
* * * * *
3654263 ATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTCGA-GAA
66 ATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGAA
* *
3654327 GCAAACTTAGA-TATTACAAAAATTGGTGGGAAAAATGCTTTTGTTGTGAAACCAAAACATCAAT
131 -CAAACTTAGACT-TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAAT
* *
3654391 ATCATATATCCTAATGGGAAGACCATATTTATGGTGCATAATCCTAAAAAGAATGGGGATTAGTA
194 ATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA
*
3654456 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA-CAAAAAACGGTGGAAAAAA
259 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGG-AAAGA
* *
3654520 AAAGCTTTTCTTACGACACCAAAGCAAT-AATGCCTAGTATCCTAAAGAAAGGATTGTG-TTTAG
322 AAAGCTTTTCTTACGACACCAAAGCAATCAATGTCAAGTATCCTAAAGAAAGGATTGTGTTTTAG
* *
3654583 GTTCCCAA-CTCTGAAAATAATGGAGACTGCT-ATGAGAAGCGATG-TTCATCTTATTTAAGGGA
387 GTTCCCAATCT-TGAAAATAATGGAGACTG-TAATGAGAATCGATGCTT-GTCTTATTTAAGGGA
* * * *
3654645 TAAACTTTGATTATAAGGAGAATAGGGCA
449 TGAACTATGATTTTAAGGAAAATAGGGCA
* * * * * *
3654674 AAGAAAAGATTTCCTTGCAAAAAAAAATCATCAATATCACTTATCCTAATGAAAAGAATGTGTTT
1 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAATGAGAAGAATGTGCTT
* * * * * * * *
3654739 ACAGTGCCTAATC-CTAAAATGAATGAAGATCATTTCTAAAATCCATGTTTGTCTCTTTTTAGGC
66 ATAATGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGA
* *** * *
3654803 ACAAACTTAGACTTTACAAAAATTGGTGGGGAGAAAA--CCTTTCTTGCGAAAATGAAGCATTAA
130 ACAAACTTAGACTTTACAAAAATTGGT-GGGA-AAAATGCCTTTCTTGTGAAACCAAAACATCAA
** * ** * * * * ** *
3654866 TATCACGTATCCTAATGAGAAGAATATGTTTATTGTGCCTAATCTTGAAAAGATTAAGGATTAGC
193 TATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
** * * **
3654931 ATGACAATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCA-CAAAACACTATGGAAAGA
258 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAGA
* * * * ** * * *
3654995 AAAGCTTTTCTTGCGATACCAAATC-ATCAATGTCCTA-TATCCTATTGAAGGGAATGTGTTTTT
322 AAAGCTTTTCTTACGACACCAAAGCAATCAATGT-CAAGTATCCTAAAGAAAGGATTGTGTTTTA
* * *
3655058 GGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGT-TTATTTAAGGGATG
386 GGTTCCCAATCTTGAAAATAATGGAGACTGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATG
*
3655122 AACTATAATTTTAAGGAAAATAGGGCA
451 AACTATGATTTTAAGGAAAATAGGGCA
* * * * *
3655149 AAAAAAAGGGTTTCCATGCAAAAGAAAATCATCAATATGATTTACCCTAATGTGGAGAATGTGCT
1 AAGAAAA-GATTTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAATGAGAAGAATGTGCT
*
3655214 TATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTCGAGGA
65 TATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGA
** * * * *
3655279 ATGAACTTAAACATTACAAAAATTGGTGGGAAAAATGCCTTTATTTTGAAACCAAAACATCAATA
130 ACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATA
*
3655344 TCATATATCCTAATGGGAAGACCATATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
195 TCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
** *
3655409 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTGAAAACGCTGGAAAGAAAA
260 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
**
3655474 GCTTTTCTTGTGACACCAAAGCA
325 GCTTTTCTTACGACACCAAAGCA
3655497 TCTATATTGA
Statistics
Matches: 1544, Mismatches: 204, Indels: 55
0.86 0.11 0.03
Matches are distributed among these distances:
474 6 0.00
475 105 0.07
476 922 0.60
477 505 0.33
478 6 0.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (477 bp):
AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATGATTTATCCTAATGAGAAGAATGTGCTT
ATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGAA
CAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATAT
CATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATG
AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
CTTTTCTTACGACACCAAAGCAATCAATGTCAAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTC
CCAATCTTGAAAATAATGGAGACTGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTA
TGATTTTAAGGAAAATAGGGCA
Found at i:3657146 original size:12 final size:11
Alignment explanation
Indices: 3657124--3657199 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3657114 AGAGAAAGAA
*
3657124 GAGAGAGGAGG
1 GAGATAGGAGG
3657135 GATGATAGGAGG
1 GA-GATAGGAGG
*
3657147 AGAGACAGGA--
1 -GAGATAGGAGG
*
3657157 GAGATAGTA--
1 GAGATAGGAGG
3657166 GAGATAGGAGG
1 GAGATAGGAGG
3657177 GATGATAGGAGG
1 GA-GATAGGAGG
*
3657189 AGAGACAGGAG
1 -GAGATAGGAG
3657200 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3657175 original size:42 final size:42
Alignment explanation
Indices: 3657114--3657232 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
3657104 TAGCCCTCAA
* *
3657114 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3657156 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3657198 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3657233 GAGAGAAGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3657216 original size:18 final size:18
Alignment explanation
Indices: 3657189--3657238 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
3657179 TGATAGGAGG
*
3657189 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
3657207 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
3657225 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
3657239 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:3664402 original size:42 final size:42
Alignment explanation
Indices: 3664347--3664465 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
3664337 TTCTTCTCTC
* *
3664347 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3664389 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
3664431 CTCCTCCTATTATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3664466 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3664407 original size:24 final size:24
Alignment explanation
Indices: 3664371--3664456 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
3664361 CCTCCTCTCT
* *
3664371 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3664395 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3664416 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3664437 CTATTATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3664457 TCTTTCTCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 13 0.27
22 5 0.10
24 21 0.44
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3664431 original size:18 final size:18
Alignment explanation
Indices: 3664362--3664432 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3664352 CCTGTCATCC
* *
3664362 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3664380 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3664402 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3664422 CTCCTGTCTCT
1 CTCCTGTCTCT
3664433 CCTCCTATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3668228 original size:476 final size:476
Alignment explanation
Indices: 3667327--3669253 Score: 2434
Period size: 476 Copynumber: 4.0 Consensus size: 476
3667317 TCATGGTTGT
* * * *
3667327 CATCATATATCAAGTATCCTAAAGAAAGG-ATCGTGTTTTAGGTTCCCAATCCTAAAAATATTGG
1 CATCA-ATGTCAAGTATCCAAAAGAAAGGAAT-GTGTTTTAGCTTCCCAATCCTAAAAATAATGG
3667391 AGACTATAACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATAGA
64 AGACTATAACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATAGA
* * *
3667456 GCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCAATATGATTTATCCTAATGAGGAGAATGTG
129 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * * * *
3667521 CTTATAATGCTTAATCACAAAATGAATGAATATCATTACTTGATTCCTTGTTTGTCTTATTTGAG
194 CTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAG
* *
3667586 GCACAAACTGAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACTAAAACATCAA
259 GCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAA
* * *
3667651 TATCGTATATCCTAATTG-GAAAACCATGTTTATGGTGCCTAACCCTAAAAAGAATGGGGATTAG
324 TATCGCATATCCTAA-TGAGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * * * *
3667715 TC-TGAGTAATCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCCAAAACAGTGGAAAC
388 -CATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
* * * *
3667779 AAAAACTTTTCTTACTACAGCAAAG
452 AAAAGCTTTTCTTGCGACACCAAAG
* * *
3667804 CATCAATGTCAAGTATCCAAAAGAAAGGATTGTGTTTTAGCTTCCTAATCCTAAAAATATTGGAG
1 CATCAATGTCAAGTATCCAAAAGAAAGGAATGTGTTTTAGCTTCCCAATCCTAAAAATAATGGAG
* * * * *
3667869 ACTATAACAA-AATTCAATGCTCGCCTTATTTAAGGGATGAACTATGATTTTAAGAAAAATAGAT
66 ACTATAACAAGAA-TCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATAGAG
* * *
3667933 CACAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATGATTTATCCTAATGAGGAGAATGTGC
130 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGC
* * *
3667998 TTATAATGCCTATTCACACAAA-GAATGAAGATCATTACTGGAATCCTTATTTGTCTCATTTGAG
195 TTATAATGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAG
* **
3668062 GCATAAACTTACCCTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAA
259 GCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAA
*
3668127 TATCGCATATCCTAATTG-GAAGACCATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAG
324 TATCGCATATCCTAA-TGAGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * *
3668191 TATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCCAAAACGGTGGAAAGA
388 CATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
*
3668256 AAAGCTTTTCTTGCGAGACCAAAG
453 AAAGCTTTTCTTGCGACACCAAAG
* * *
3668280 CATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTAGCTTCCCAATCC-AGAAAATAATGGA
1 CATCAATGTCAAGTATCCAAAAGAAAGGAATGTGTTTTAGCTTCCCAATCCTA-AAAATAATGGA
* * * * * * * * *
3668344 GACAATTACAAGAATCGTTACTTGTTTTATTTAAGGGTTGAATTTTGATTTTAAGGAAAATAGGG
65 GACTATAACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATAGAG
* * * * * *
3668409 CAAAGAAAATATTTCCACGCAAAAAAGAAAATCATCATTATCATTTACCCTAATAAGGAGAATGC
130 CAAAGAAAAGATTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
** * * * * *
3668474 ATTTATAGTACCTAATCACAAAATGAATGAAAATCGTTACTAGAATCCATGTTTGTCTCATTTGA
193 GCTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGA
* *
3668539 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCA
258 GGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCA
* * * * * *
3668604 ATATCGCGTATCGTAATGAAAAGACCATGTTTATGATGCCTAATCCTGAAAAGAAGGGGGATTAG
323 ATATCGCATATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* ** * * *
3668669 CACGACAATTCATGTTTGTCTTATTTACGAGACAAACTTTTATTCTATCAAAAACTGTGGAAAGA
388 CATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
3668734 AAAGCTTTTCTTGCGACACCAAAG
453 AAAGCTTTTCTTGCGACACCAAAG
* * * * * * * *
3668758 CATCAATGATGTTAAGTAT-CATATAG-AAGAGAATGTATTTTTGGTTCCCAATCTTGAAAAGAA
1 CATC-A--ATGTCAAGTATCCA-AAAGAAAG-GAATGTGTTTTAGCTTCCCAATCCTAAAAATAA
* * * * * *
3668821 TGGAGTCTATTACGAGAATCGATGCTTATCTTATTTAAGGCATGAACTTTGATTTTAAGGAAAAT
61 TGGAGACTATAACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAAT
* *
3668886 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAAT
126 AGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * ** * * * **
3668951 GTGCATATAATGCCTCATCTTAAAATGAATAAAGATCATTTCTAGAATCCTTGTCTGTCTTGTTT
191 GTGCTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTT
* ** * * * * * *** * *
3669016 CAGGCATGAAGTTAGTCATTACAAAAATTGGTGGGAATAATGCTTTTCTTAATAAACTAAACCAT
256 GAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACAT
* ** * *
3669081 CAATATTGGGTATCCTAATGAGAAGACCATGTTTATGGTGGCTAATCCTGAAAAGAATGGGGATT
321 CAATATCGCATATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT
* * *
3669146 AGCATGAGTACTCATGTTTGTCATATTTAAGA-ACAAACTTTGATTCTATCAAAAATGGTGGAAA
386 AGCATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
*
3669210 GAAAAGCTTTTCTTGCAACACCAAAG
451 GAAAAGCTTTTCTTGCGACACCAAAG
*
3669236 CATCAATGTCATGTATCC
1 CATCAATGTCAAGTATCC
3669254 TAATGAGAAG
Statistics
Matches: 1256, Mismatches: 177, Indels: 35
0.86 0.12 0.02
Matches are distributed among these distances:
475 12 0.01
476 542 0.43
477 17 0.01
478 344 0.27
479 223 0.18
480 3 0.00
481 115 0.09
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (476 bp):
CATCAATGTCAAGTATCCAAAAGAAAGGAATGTGTTTTAGCTTCCCAATCCTAAAAATAATGGAG
ACTATAACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATAGAGC
AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCT
TATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGC
ACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATA
TCGCATATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGCAT
GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
GCTTTTCTTGCGACACCAAAG
Found at i:3669445 original size:159 final size:158
Alignment explanation
Indices: 3669090--3669462 Score: 527
Period size: 159 Copynumber: 2.4 Consensus size: 158
3669080 TCAATATTGG
* * * * * *
3669090 GTATCCTAATGAGAAGACCATGTTTATGGTGGCTAATCCTGAAAAGAATGGGGATTAGCATGAGT
1 GTATACTAATGAGAAGACAATGTTTATAGTGCCCAATCTTGAAAAGAATGGGGATTAGCATGAGT
*
3669155 ACTCATGTTTGTCATATTTAAGAACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
66 ACTCATGTTTGTCATATTTAAGAACAAACCTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
3669220 TCTTGCAACACCAAAGCATCAATGTCAT
131 TCTTGCAACACCAAAGCATCAATGTCAT
* * *
3669248 GTATCCTAATGAGAAGACCATGTTTATAGTGCCTAATCTTGAAAAGAATGGGGATTAAG-ATGAG
1 GTATACTAATGAGAAGACAATGTTTATAGTGCCCAATCTTGAAAAGAATGGGGATT-AGCATGAG
3669312 TACTCATGTTTGTCATATTTAAGAGACAAACCTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
65 TACTCATGTTTGTCATATTTAAGA-ACAAACCTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
*
3669377 TTTCTTGCGACACCAAAGCATCAATGTCAT
129 TTTCTTGCAACACCAAAGCATCAATGTCAT
* ** * * * *
3669407 GTATACT-GT-AGAAGGGAATGTGTTTTCGATTCCCAATCTTGAAAATAATGGGGATT
1 GTATACTAATGAGAAGACAATGT-TTATAG-TGCCCAATCTTGAAAAGAATGGGGATT
3669463 GCTACGAGAA
Statistics
Matches: 196, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
157 9 0.05
158 87 0.44
159 100 0.51
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (158 bp):
GTATACTAATGAGAAGACAATGTTTATAGTGCCCAATCTTGAAAAGAATGGGGATTAGCATGAGT
ACTCATGTTTGTCATATTTAAGAACAAACCTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
TCTTGCAACACCAAAGCATCAATGTCAT
Found at i:3670422 original size:159 final size:158
Alignment explanation
Indices: 3670164--3677419 Score: 2192
Period size: 159 Copynumber: 45.8 Consensus size: 158
3670154 TTTTCTTAAG
* * * * *
3670164 AAACCAAAGCATCAATATCGTGTATCCAAATG-AGAAGAGCT-TGTTTATGGTGCTTAATCTTGA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGA-ATGTGTTTATGGTGCCTAATCCTGA
* ** * * * *
3670227 AAAGAATGGGGATTAGGATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
64 AAAGAATGGAGATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* *
3670292 AAAAACGGTGGAAAGAAAAGCATTTCTTGTG
128 AAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * *
3670323 ACACCAAAGCATCAATGTCCTGTATCCTATTGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
* * * ***
3670388 AGAATGGAGATTACTATGAGAATCGATGCTTGTCTTATTTAACGGATAAACTTTGATTTTAAGGA
66 AGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAA
* * * *
3670453 AAATAAG-GCAAAGAAAAG-ATTTCCATGCA
130 AAAT-GGTGGAAAGAAAAGCATTT-CTTGTA
** * * * * *
3670482 AAAGAAAATCATCAATATCAAT-TATCCTAATGAAAAGAATGTGCTTATAGTGCCTAATCAT-AA
1 AAACCAAAGCATCAATATC-ATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAA
* ** * * * * *
3670545 AATGAATGAAGATCGTTACT-AGAATCCATG-TTGTCTCATTT-GGGGA-ACGGACTTCGACAT-
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGGATA--AACTTTGA-TTC
* * *
3670605 TA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGCT-
124 TATCAAAAA-TGGTGGAAAGAAAAGCATTTCTTG-TA
* * * ***
3670639 AAACTACAGCATCAATATCGTGTATCCTAATG-AGAAGACCATGTTTATGGTGCCTAATCCTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * *
3670703 AAGAAT-GAGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTATC
65 AAGAATGGA-GATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* * *
3670767 AAAAACGGTGGAAAGAAAAGCTTTTCTTGTG
128 AAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * * * *
3670798 ACACCAAAGCATCAATGTCAAGTATCCTAAAGAA-AGGATTGTGTTT-TAAGTTCCCATTCTTGA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTAT-GGTGCCTAATCCTGA
* * * * ** * * * * * **
3670861 AAATATTGGAGACTATAACAAGAATTGATGCTTGTCTTATTTATGGGATGAACTTTAATTTTAAG
64 AAAGAATGGAGATTATTATGAGAA-TCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* * *
3670926 GAAAATAGGAT--AAAGAAAAG-ATTTCCATGCA
128 AAAAAT-GG-TGGAAAGAAAAGCATTT-CTTGTA
** * * * * * * *
3670957 AAAGAAAATCATCAATATCTTTTATCCTAATG-AGAAGAATGTGCTTATAGTGCCTAAT-ATTAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
** * * * * ** * *
3671020 AATGAATTAAGATCATTACT-AAAATCCATGTTTGTCTTATTTTAGACACAAACTTAGACTT-TA
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGA-TTCTA
** * * *
3671083 -CAAAAATTGGTGGGTA-AAAAGCCTTTCCTGTG
126 TCAAAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * *
3671115 AAACTAAAGCA-CTAATATCTTGTATCTTAGTG-AGAAGACTATGTTTATAGTGCCTAATCCT-A
1 AAACCAAAGCATC-AATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGA
* * * * * * *
3671177 AAAAAATGGAGATTAGTATGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATC
64 AAAGAATGGAGATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* * *
3671242 AAAAACGGTGGAAAGAAAAGCTTTTCTTGTG
128 AAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * * * * *
3671273 ACACCAAAGCTTCAATGTCAAGTATCCTAAAGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
* * * * ** * ***
3671338 AGAGTGGAGATTATTACGAGAATCGACGCTTGTGTTATTTAAGGGATGGACTTTGATTTTAAGGA
66 AGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAA
* *
3671403 AAATGG-GGCAAAGAAAAG-ATTTCCATGAA
130 AAATGGTGG-AAAGAAAAGCATTT-CTTGTA
** * * * * * *
3671432 AAAGAAAATCATCAATATCATTTATCCTAATG-AGAAGAATGTGCTTGTAGTGCCTAATCAT-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * * *
3671495 AATGAATGAAGATCATTACT-AGAATCCATGCTTGAT-TCATTT-GGGGCATGAACTTCGACAT-
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTG-TCTTATTTAAGGG-ATAAACTTTGA-TTC
* * * *
3671556 TA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGTT
124 TATCAAAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* *** *
3671590 AAACCAAAGCATCAATATCGTGTATCCTAATG-AGAAGACCATGTTTATGGTGCCGAATCCT-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * *
3671653 CAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTATC
65 -AAGAATGGAGATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* *
3671718 AAAAACGGTGGAAAGAAAAGCTTTTCTTGTA
128 AAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * *
3671749 ACACCAAAGCATCAATGTCAAGTATCCTAAAGAA-AGGATTGTGTTT-TAGGTTCCCAATCCAGA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTAT-GGTGCCTAATCCTGA
* * ** * * * * * * * **
3671812 AAATAATGGAGACTATTACAAGAATCGTTACTTGTTTTATTTAAGGGTTGAATTTTGATTTTAAG
64 AAAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* * * * * *
3671877 GAAAATAAG-GCAAAGAAAA-TATTTCCATGCAAA
128 AAAAAT-GGTGGAAAGAAAAGCATTT-CTTG--TA
** * * * * * * * * *
3671910 AAAGAAAATCATCAATATCGTTTACCCTAATGAGGAGATTGTGCTTATAGTGCGTAATCAC--AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATC-CTGAA
* * * * ** * ** ** **
3671973 AATGAATGAAAATCATTACT-AGAATCCATGTTTGT-TTCATTTGCGGCACGAACTTCAATAATA
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTT-ATTTAAGGGATAAACTTTGATTCTA
* * * *
3672036 -CAAAAATTAGTGGGAA-AAATGCCTTTCTTGCT-
126 TCAAAAA-TGGTGGAAAGAAAAGCATTTCTTG-TA
* *** *
3672068 AAACCAAAGCATCAATATCGTGTATCCTAATG-AGAAGACCATGTTTATGGTGCCTAATCCTAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * *
3672132 AAGAATGGAGATTAGTATGAGTATTCATTG-TTGTCTTTTTTAAGCGATAAACTTTGATTCCATC
65 AAGAATGGAGATTATTATGAG-AATCA-TGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* **
3672196 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
128 AAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * *
3672227 ACACCAAAGCATCAATGTCAAGTATCCTAAGGAA-AGGATTGTGTTT-TAGGTTCCTATTCCTGA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTAT-GGTGCCTAATCCTGA
* * * * * ** * * * **
3672290 AAATATTTGAGACTATAACAAGAATCGATGCATGTCTTATTTAAGGGATGAACTTTGATTTTAAG
64 AAAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* * *
3672355 GAAAATAGGAT--AAAGAAAAG-ATTTCCATGCA
128 AAAAAT-GG-TGGAAAGAAAAGCATTT-CTTGTA
** * * * * * * *
3672386 AAAGAAAATCATCAATATCATTTATCCTAATGATAG-GAATATGCTTATAGTGCCTAAT-ATTAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGA-AGAGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * * * * *
3672449 AATGAATGAAGATCATTACT-AAAATCCATGTTTGTCTTATTTTAGGCACAAACATAGACTT-TA
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGA-TTCTA
* * *
3672512 -CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGTG
126 TCAAAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* ** * * **
3672544 AAACTAAAGCA-CTAATAT-ATTGTATCCTAGCG-AGAAGACTTTGTTTATATTGCCTAATCCT-
1 AAACCAAAGCATC-AATATCA-TGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTG
* * * * * * *
3672605 AAAAAAATGGGGATTAGTATGAGTATTCATGTTTTTCTTATTTAAGAGATAAACTTTGATTCTAT
63 AAAAGAATGGAGATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTAT
* * **
3672670 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCC
127 CAAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * * * * * *
3672702 ACACCAAAGCATCATTGTCAAGTATTCTAAAGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
* ** * ***
3672767 AGAATGGAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGGACTTTGATTTTAAGGA
66 AGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAA
* * *
3672832 AAATAGG-GCAAAGAAAAG-ATTTCCATGCA
130 AAAT-GGTGGAAAGAAAAGCATTT-CTTGTA
** * * * * * *
3672861 AAAGAAAATCATCAATATCATTTATCCTAATG-AGAAGATTGTGCTTATAGTGCCTAATCAT-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * * * *
3672924 AATGAATGAAGATCATTACT-AGAGTCCATGCTTGTCTCATTT-GGGGCATGAACTTCGACAT-T
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGG-ATAAACTTTGA-TTCT
* * *
3672986 A-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGCT-
125 ATCAAAAA-TGGTGGAAAGAAAAGCATTTCTTG-TA
* * *** * *
3673019 AAACCAAAGCATCAATATCGTGTATCCTGATG-AGAAGACCATGTTTATTGTGCCTAATCCTAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* ** * * * *
3673083 AAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTATCA
65 AAGAATGGAGATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCA
* * ** *
3673148 AAAATGGTGGAAAAAAAAGCTTTTCCCGTG
129 AAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * *
3673178 ACACCAAAGCATCAATGTCA-GTATCCTAATCAAGGGAATAT-TTTTTAGGTTCC-CATCCTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTAT-GGTGCCTAATCCTGAA
* * * * * * * * **
3673240 AATAATGGAGACTATTATGAGAATTGATGCTTGTCTTATCTATGGAATGAA-TTATGATTTTAAG
65 AAGAATGGAGATTATTATGAGAA-TCATGCTTGTCTTATTTAAGGGATAAACTT-TGATTCTATC
* * * * *
3673304 GAAAATAAGT-CAAAGAAAAG-ATTTCCATGCA
128 AAAAAT-GGTGGAAAGAAAAGCATTT-CTTGTA
* * * * * * * ** *
3673335 AAA-AAAATCATCAATATGATTTATCCTAATGAGGGGATTGTACTTATAGTGCCTAAT-C-GCAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTG-AA
* * * * * ** * * *
3673397 AATGGATGAAGATCATTCTTAGAATCCATATTTGTCTCATTTGAGGTGA-AAACTTAGACTT-TA
65 AA-GAATGGAGATTATTATGAGAAT-CATGCTTGTCTTATTTAAGG-GATAAACTTTGA-TTCTA
* * ** * * *
3673460 -CAAAATTGGTGGGAA-AAATTCCTTTGTTGCA
126 TCAAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * ** * * * * *
3673491 AAACCAAAACATCAATATCGTACATTCTAATGAGGAGACTATGTTTATGGTGCCTAATCTTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
** * * ** * *
3673556 AGAATAGG-GATTAACATGACAATTCATGTTTGTCTTATTTAAGACATAAACTTTGATTCCACCA
66 AGAAT-GGAGATTATTATGAGAA-TCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCA
* * * *
3673620 AAAACT-ATGGAAAGAAAAGCTTTTTTTGTG
129 AAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
** * * * * * * * * *
3673650 ACGCCAAAGCGTCAATGTCATTTGTCCTATTGAA-AGGAATGTGTTTTTGGTTCCCAATCTTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * * *
3673714 AAGAATGGAGATTGTTATAAGAATCGATGATTGTC-TAATTGAGGAGATAAACTTTGGCTT-TAA
65 AAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGG-GATAAACTTT-GATTCTAT
** * * *
3673777 GGAAAATAGG-GCAAAGAAAAG-ATTTCCGTGCA
127 CAAAAAT-GGTGGAAAGAAAAGCATTT-CTTGTA
** * * * ** * * * *
3673809 AAAGAAAATCATCAATATGATTTATCCTAATGGGGGGAATGTGCTTATAGTACCTAAT--T-ACA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGA-A
* * * * * * * * *
3673871 AAGTGAATGAAGATCATTCCT-AGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTT-T
65 AA--GAATGGAGATTATT-ATGAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGA-TTCT
* * **
3673934 A-CAAAAATTGGTGGGAA-AAAGGC----CTTGCG
125 ATCAAAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* * **** * * * **
3673963 AAACTAAAACATCAATATCGCACATCCTAATCAGGAGACTACGTTTATGGTGCCTAATCCTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
* ** * * * ** * * *
3674028 AGAATGGGGATTAGCATGACAATTCATGTTTGTTTTATTTAAGAAACAAACTTTGATTATACCAA
66 AGAATGGAGATTATTATGAGAA-TCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAA
* * *
3674093 AAACT-GTGGAAAGAAATGCTTTTCTTG-C
130 AAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * * * * *
3674121 GATCTCAAAGCATCAATGTTAGGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAA
1 AAAC-CAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * * * ***
3674186 AAGAATGGAGATTGTTATGAGATTCGATTCTT-CCTTATTTAAGGGTTGAACTTTGATTTTAAGG
65 AAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCA
* * * *
3674250 AAAATAGG-GTAGAGAAAAG-ATTTTCATGCA
129 AAAAT-GGTGGAAAGAAAAGCA-TTTCTTGTA
** * * * * * * *
3674280 AAAGAAAATCATCAGTATCATTTATCCTTATG-AGAAGAATGTGCTTAT-ATAGCCTAATCAT-A
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGT-GCCTAATCCTGA
* * * * * * * *
3674342 AAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTT-GGGGCA-AGAAGTTCGACAT
64 AAA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGG-ATA-AACTTTGA-TT
* *
3674404 -TA-CAAAAATTGGTAGG-AA-AAATGCCTTTCTTGCT-
123 CTATCAAAAA-TGGT-GGAAAGAAAAGCATTTCTTG-TA
* * *** *
3674438 AAGCCAAAGCATCAATATCGTGTATCCTAATG-AGAAGACCATGTTTATGGTGCCTAAT-CTCAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCT-GA
* ** * * * *
3674501 AAAGAATGGGGATTAGAATGAGTATTCACGTTTGTCTTATTTAAGAGATTAAACTTTGATTCTAT
64 AAAGAATGGAGATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGA-TAAACTTTGATTCTAT
** * * **
3674566 CAAAAACAGTGGAAAGAAAAGCTTTTCATGCG
127 CAAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * *
3674598 ACACCAAAGCATCAATGTCA-GTATCCTAATCAAGGGAATGT-TTTTTAGGTTCCT-ATGCTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTAT-GGTGCCTAATCCTGAA
* * * * * * * *
3674660 AATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATCTATGGAATGAA-TTATGATTTTAAT
65 AAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTT-TGATTCT-AT
* * * *
3674724 -GAAAATAGG-GCAAAGAAAAG-ATTTTCATGCA
127 CAAAAAT-GGTGGAAAGAAAAGCA-TTTCTTGTA
** * * * * * * * * **
3674755 AAAGAAAATCATCAATATGATTTATCCTAATGAGGGGAATGTGCTTATAGTGCCTTAT-CAAAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
* * * * * * * * *
3674819 ATGAATGAAGATCATTCCT-AGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTT-TA-
66 A-GAATGGAGATTATT-ATGAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGA-TTCTAT
* * * * *
3674881 CAAAATTTGCTAGG-AA-AAATGCCTTTCTTGTG
127 CAAAA-ATGGT-GGAAAGAAAAGCATTTCTTGTA
* * * * * *
3674913 AAACCAAAGCGTCAATATCATGTATCCTAAT-CAGAAAACTATGTTTATGGTGCCTAATCATAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAA-TGTGTTTATGGTGCCTAATCCTGAA
* * * * ** ** *
3674977 AAGAATGGGGATTAGTATGTGTATTCATTTTTGTCTTATTTAATAGACAAACTTTGATTCTATCA
65 AAGAATGGAGATTATTATGAG-AATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCA
* * * ***
3675042 AAAGTGGTAGAAAGAAAAGCTTTTCTTACG
129 AAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * *
3675072 ACACCAAAGCGTCAATGTCATGTATCCTAATGAA-AGGAATGTGTTT-TAGGTTCCCAACTAC-G
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTAT-GGTGCCTAA-TCCTG
* * * ** * * * * *
3675134 AAAATAATAGAGACTGCTACGAGAATCGATGCTCGTCATATTTAAGGGATAAACTTTGATTATAA
63 AAAAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTAT
** * **
3675199 GGAAAAT-ATGGCAAAGAAAAG-ATTTCCTTCCA
127 CAAAAATGGTGG-AAAGAAAAGCATTT-CTTGTA
** * * ** * * *
3675231 AAAGAAAATCATTAATATCACCTATCCTAATGAAAAGAATGTGTTTATAGTGCCTAATCC-CAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
* * * * * * * * ** *
3675295 ATGAATGAAGATCATT-TCTAAAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT-TA-
66 A-GAATGGAGATTATTAT-GAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGA-TTCTAT
* ** * *
3675357 CAAAAATTAGTGG-GGGAGAAGCCTTTCTTGTA
127 CAAAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * *
3675389 AAAACGAAGCATCAATATCGTGTATCCTAAT-AAGAAGACTATGTTTATAGTGCCTAATCCCGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * *
3675453 AAGAATAGG-GATTATTGTGA-ATGTTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
65 AAGAAT-GGAGATTATTATGAGA--ATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTAT
* * * *
3675516 CGAAAACGGTGGAAAGAAAAGCTTTTCTTGCA
127 CAAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * * * * *
3675548 ACACCAAAGCATCACTGGTCAAGTTTCCTAAAGAA-AGGATTGTGTTT-TAGGTTCCCATTCCTA
1 AAACCAAAGCATCAAT-ATCATGTATCCTAATGAAGA-GAATGTGTTTAT-GGTGCCTAATCCTG
* * * * * * * * *
3675611 AAAATATTGGAGACTGTAACGAGAATCGATGCTTGTCTTATTT-AGGAGATGAACTATGATTTTA
63 AAAAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGG-GATAAACTTTGATTCT-
** * * *
3675675 AGGAAAACA-GG-GTAAAGAAAAG-ATTTCCATGGA
125 ATCAAAA-ATGGTGGAAAGAAAAGCATTT-CTTGTA
** * * * * * ***
3675708 AAAGAAAATCATCAATATCATTTATGCTAATGAGGAGAATGTGCTTA-GAGTAAGTAATCAC--A
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATG-GTGCCTAATC-CTGA
* * * * * * * * *
3675770 AAATGAATGAAAATCATTACT-AGAATCCATGTTTATCTTATTTGAGGCATGAACTTAGACTT-T
64 AAA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGA-TTCT
* * * * ***
3675833 A-CAAAAATAGGTGGGAA-AAATGCCTTTCCTACG
125 ATCAAAAAT-GGTGGAAAGAAAAGCATTTCTTGTA
** * * * * * *
3675866 AAACCAAAGCA-CTAATATTGTGTATCTTAATG-AGAAGACTATGTTTATAGTGCCTAATTCTTA
1 AAACCAAAGCATC-AATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGA
* * * * * * * *
3675929 AAAAAAGGGGGATTAATATGAGTATTCAT-CTTTGTCTTATGTAAGAGATAAACTTTGATTCAAT
64 AAAGAATGGAGATTATTATGAG-AATCATGC-TTGTCTTATTTAAGGGATAAACTTTGATTCTAT
* * * **
3675993 TAAAAATGATGGAAAGAAAAGCTTTTCTTGCG
127 CAAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * * *
3676025 ACACCAAAGCATCAATGTCAAGTACCCTAAAGAA-AGGATTGTGTTT-TAGGTTCCCAATCTTG-
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTAT-GGTGCCTAATCCTGA
* * * ** * * * * *
3676087 AAAGTATTGGAGATTGTAACAAGAATCGATGCTTGTCTTATTTAAGAGATGAACTATGATTTTAA
64 AAAG-AATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTAT
** * * * * * *
3676152 GGAAAATAGAGCAATGAAAAG-ATTTTCATGCA
127 CAAAAATGGTGGAAAGAAAAGCA-TTTCTTGTA
** * * * * * * *
3676184 AAAGAAAATCATCAATATGATTTATCCTAAGGAGGAGAATGTGCTTATAGTGCCTAATCAC--AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATC-CTGAA
* * * * * * *** ** * *
3676247 AATGAATGAAGATCATTACT-AGAATCCATGTTTGTGTCATTTGACACACGAACTTAGATTTTA-
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTAT
* * * *
3676310 CAATAATTGGTGGGAA-AAAAGCCTTTCTTGCA
127 CAA-AAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * *
3676342 AAACCAAAGCA-CTAATATCGTGTATCCTAATG-AGAAGACTATGTTTATAGTGCCTAATCCT-A
1 AAACCAAAGCATC-AATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGA
* * * * * *
3676404 AAAGAAATGGGGATTAGTATGAG--TCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
64 AAAG-AATGGAGATTATTATGAGAATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* * *
3676467 AAAAACGGTGGAAAGAAAAGCTTTTCTTGTG
128 AAAAATGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * *
3676498 ACACCAAGGCACCAATGTCTTGTATCCTAATGAAGGGAATGTGTTT-TAGGAGCCCAATCCTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTAT-GGTGCCTAATCCTGAA
* * * * ** * * * * * * * ***
3676562 AATATTGTAGACTATTACAAGAATCAATACTTGTTTTGTTTAAGGGTTGAATTTTGATTTTAAGG
65 AAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCA
* * * *
3676627 AAAAT-ATGACAAAGAAAAG-ATTTTCATGCA
129 AAAATGGTG-GAAAGAAAAGCA-TTTCTTGTA
* ** * * * * * *
3676657 GAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC--AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATC-CTGAA
** ** * * * * ** * *
3676720 AATGAATAAAGACCATTACT-AGAATCCATGGTTGTCTCATTTGAGGCACGAACTTAGGCTT-TA
65 AA-GAATGGAGATTATTA-TGAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTT-TGATTCTA
* * * *
3676783 -CAGAAATTGGT-GAGAA-AAATGCCTTTCTTGCA
126 TCA-AAAATGGTGGA-AAGAAAAGCATTTCTTGTA
* * * ** * *
3676815 AAACGAAAACATCAATATCATGTATCCTATTG-AGAAGACCGTGTTAATGGTGCATAATCCTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * * * *
3676879 AAGAATGGGGATTAGTATGACAATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCA
65 AAGAATGGAGATTATTATGAGAA-TCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCA
* * * *
3676944 AAAACT-GTGGAAAGAAAAGCTTTTTTTATG
129 AAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * * * *
3676974 ACACTAAAGCATCAATGTCATGCATCCTAATGAACGA-CATGTGTTT-TAGGTTCCCAATCTTGA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAA-GAGAATGTGTTTAT-GGTGCCTAATCCTGA
* * * * ** ** * * **
3677037 AAATAATAGAAACTGCTACAAGAATCTGTGCTTGTCTTATTTAAGGGATAAACTTTGATTATAAG
64 AAAGAATGGAGATTATTATGAGAATC-ATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
* * * *
3677102 GAAAATAGG-GCAAAAAAAAAG-ATTTTCTTGCA
128 AAAAAT-GGTG-GAAAGAAAAGCA-TTTCTTGTA
* * * * * * * * *
3677134 AAA-AAAATCATTAATATCATTTATCCTAATGAAAATAATGTGTTTGTAGTGCCTAAT-CTCAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
* * * * * * *
3677197 ATGAATGAAGATCATT-TCTAGAATCCATGTTTGTCTTATTTAAGGCACAAACTTAGACTT-TA-
66 A-GAATGGAGATTATTAT-GAGAAT-CATGCTTGTCTTATTTAAGGGATAAACTTTGA-TTCTAT
** * *
3677259 CAAAAATTGGTGGGGA-AAAAGCCTTTCTTGCA
127 CAAAAA-TGGTGGAAAGAAAAGCATTTCTTGTA
* * * * * *
3677291 AGACCGAAGCATCAATATCGTGTATCCTAATG-AGAAGACTATGTTTATGGTGCCTAATCTTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCCTGAA
* * * * * * *
3677355 AAGAATGGGGATTAGTATGAGTATTCATG-TT-TACTTTTTTGAGAGACAAACTTTGATTCTATC
65 AAGAATGGAGATTATTATGAG-AATCATGCTTGT-CTTATTTAAGGGATAAACTTTGATTCTATC
3677418 AA
128 AA
3677420 TGTTTGTCTT
Statistics
Matches: 5028, Mismatches: 1649, Indels: 841
0.67 0.22 0.11
Matches are distributed among these distances:
153 3 0.00
154 91 0.02
155 51 0.01
156 130 0.03
157 505 0.10
158 1598 0.32
159 2293 0.46
160 258 0.05
161 94 0.02
162 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
AAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCCTGAAA
AGAATGGAGATTATTATGAGAATCATGCTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAAA
AATGGTGGAAAGAAAAGCATTTCTTGTA
Found at i:3671881 original size:476 final size:476
Alignment explanation
Indices: 3669195--3677419 Score: 10083
Period size: 475 Copynumber: 17.3 Consensus size: 476
3669185 TTGATTCTAT
* * * * *
3669195 CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCATCAATGTCATGTATCCTAAT
1 CAAAAATTGGTGGGAA-AAATGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTAAT
* * *
3669258 GAGAAGACCATGTTTATAGTGCCTAATCTTGAAAAGAATGGGGATTAAG-ATGAGTACTCATGTT
64 GAGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT-AGTATGAGTATTCATGTT
* * *
3669322 TGTCATATTTAAGAGACAAACCTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA
128 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * ** * *
3669387 CACCAAAGCATCAATGTCATGTATACTGTAGAAGGGAATGTGTTTTCGATTCCCAATCTTGAAAA
193 CACCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAA
* * * * *
3669452 TAATGGGGATTGCTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTATGATTTTAAGGAA
258 TAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * *
3669517 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGTCAATATCATTCATCCTAATGAGAAT
323 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAG
*
3669582 AATGTG-TGTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
388 AATGTGCT-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * *
3669646 ATTTGAGGCATGAGCTTAGACATTA
452 ATTTGAGGCACGAACTTAGACTTTA
*
3669671 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCG-----AAA-C--C-A-A--GTGTATGCTAATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * ** *
3669724 GAAAACCATGTTTATGGTGCCTAATCCTGAAAAAAAAAGGGATTAGTATGAGTATTCTTGTTTGT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * * * *
3669789 GTTATTTAAGAGACAAAGTTTGATTGTATCAAAAACGAG-GGAAACAAAAACTTTTCTCGCGGCA
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTGGAAAGAAAAGCTTTTCTTGCGACA
* * * * *
3669853 CCAAAGCATCAATGT-TAGTGTCCT-AAGTAGGGGAAAGTGTTTTAGGTTCCC-ATCCTGAAAAT
195 CCAAAGCATCAATGTCAAGTATCCTAAAG-AAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAT
* * * * * * *
3669915 AATGGAGACTGTTATGAAAATCGATGCTTGTCTTATCTATGGAATGAACTATGATTTTGAGGAAA
259 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
* * *
3669980 ATAATGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
324 AT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAG
* * * *
3670045 AATGTG-TTTTAGTCCCTAATCACAGAATGAATG-AGATCAGTACTAGAATCCATGTTTGTCTCA
388 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
**
3670108 TTTGAGTTACGAACTTAGACTTTA
453 TTTGAGGCACGAACTTAGACTTTA
* ** * * * ** *
3670132 TAAAAATTGCCGGGAATAGTGCTTTTCTTAAGAAACCAAAGCATCAATATCGTGTATCCAAATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * * * * *
3670197 GAAGAGCTTGTTTATGGTGCTTAATCTTGAAAAGAATGGGGATTAGGATGAGTACTCATGTTTGT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* *
3670262 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGTGACAC
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
** ** * * *
3670327 CAAAGCATCAATGTCCTGTATCCTATTGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
196 CAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAA
* ** * * *
3670392 TGGAGATTACTATGAGAATCGATGCTTGTCTTATTTAACGGATAAACTTTGATTTTAAGGAAAAT
261 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * *
3670457 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAATTATCCTAATGAAAAGAAT
326 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAAT
* *
3670522 GTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCGTTACTAGAATCCATG-TTGTCTCATTT
391 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * *
3670586 GGGGAACGGACTTCGACATTA
456 GAGGCACGAACTTAGACTTTA
* * *
3670607 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCTAAACTACAGCATCAATATCGTGTATCCTAATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
*
3670672 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
3670737 CTTTTTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACAC
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * *
3670802 CAAAGCATCAATGTCAAGTATCCTAAAGAAAGGATTGTGTTTTAAGTTCCCATTCTTGAAAATAT
196 CAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAA
* * * * * *
3670867 TGGAGACTATAACAAGAATTGATGCTTGTCTTATTTATGGGATGAACTTTAATTTTAAGGAAAAT
261 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
** *
3670932 AGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGAAGAAT
326 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAAT
* * * *
3670997 GTGCTTATAGTGCCTAAT-ATTAAAATGAATTAAGATCATTACTAAAATCCATGTTTGTCTTATT
391 GTGCTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * *
3671061 TTAGACACAAACTTAGACTTTA
455 TGAGGCACGAACTTAGACTTTA
* * * * * *
3671083 CAAAAATTGGTGGGTAAAAA-GCCTTTCCTGTGAAACTAAAGCA-CTAATATCTTGTATCTTAGT
1 CAAAAATTGGTGGG-AAAAATGCCTTTCTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAAT
* * * *
3671146 GAGAAGACTATGTTTATAGTGCCTAATCCT-AAAAAAATGGAGATTAGTATGAGTATTCATGTTT
64 GAGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* *
3671210 TTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGAC
129 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * *
3671275 ACCAAAGCTTCAATGTCAAGTATCCTAAAGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAG
194 ACCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAT
* * * * * *
3671340 AGTGGAGATTATTACGAGAATCGACGCTTGTGTTATTTAAGGGATGGACTTTGATTTTAAGGAAA
259 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
* *
3671405 ATGGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGA
324 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGA
* * *
3671470 ATGTGCTTGTAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGCTTGAT-TCA
389 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG-TCTCA
* * * *
3671534 TTTGGGGCATGAACTTCGACATTA
453 TTTGAGGCACGAACTTAGACTTTA
**
3671558 CAAAAATTGGTGGGAAAAATGCCTTTCTTGTTAAACCAAAGCATCAATATCGTGTATCCTAATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
*
3671623 GAAGACCATGTTTATGGTGCCGAATCCT-AACAAGAATGGGGATTAGTATGAGTATTCATGTTTG
66 GAAGACCATGTTTATGGTGCCTAATCCTGAA-AAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * **
3671687 TCTTTTTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTAACA
130 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * **
3671752 CCAAAGCATCAATGTCAAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAATCCAGAAAATA
195 CCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATA
* * * * * * *
3671817 ATGGAGACTATTACAAGAATCGTTACTTGTTTTATTTAAGGGTTGAATTTTGATTTTAAGGAAAA
260 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * *
3671882 TAAGGCAAAGAAAATATTTCCATGCAAAAAAGAAAATCATCAATATCGTTTACCCTAATGAGGAG
325 TAGGGCAAAGAAAAGATTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGAAG
* * * *
3671947 ATTGTGCTTATAGTGCGTAATCACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTTTCA
388 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* *
3672012 TTTGCGGCACGAACTTCA-A-TAATA
453 TTTGAGGCACGAACTT-AGACT-TTA
* *
3672036 CAAAAATTAGTGGGAAAAATGCCTTTCTTGCTAAACCAAAGCATCAATATCGTGTATCCTAATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* *
3672101 GAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGAGTATTCAT-TGTTG
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT-TTG
* * * * *
3672165 TCTTTTTTAAGCGATAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
130 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * * * * *
3672230 CCAAAGCATCAATGTCAAGTATCCTAAGGAAAGGATTGTGTTTTAGGTTCCTATTCCTGAAAATA
195 CCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATA
* * * * * *
3672295 TTTGAGACTATAACAAGAATCGATGCATGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
260 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
** * *
3672360 TAGGATAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGATAGGAA
325 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
* * * *
3672425 TATGCTTATAGTGCCTAAT-ATTAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCTTAT
390 TGTGCTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
3672489 TTTAGGCACAAACATAGACTTTA
454 TTGAGGCACGAACTTAGACTTTA
* * * ** **
3672512 CAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCA-CTAATATATTGTATCCTAGCG
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAATG
** ** * *
3672576 AGAAGACTTTGTTTATATTGCCTAATCCT-AAAAAAATGGGGATTAGTATGAGTATTCATGTTTT
65 AGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* *
3672640 TCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCCACA
130 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * * * *
3672705 CCAAAGCATCATTGTCAAGTATTCTAAAGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGA
195 CCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATA
* * *
3672770 ATGGAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGGACTTTGATTTTAAGGAAAA
260 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
*
3672835 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAT
325 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
* * *
3672900 TGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAGTCCATGCTTGTCTCATT
390 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
3672965 TGGGGCATGAACTTCGACATTA
455 TGAGGCACGAACTTAGACTTTA
* *
3672987 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCTAAACCAAAGCATCAATATCGTGTATCCTGATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * *
3673052 GAAGACCATGTTTATTGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGAGTATTCATGTTTGT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * ** *
3673117 CTTTTTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCCCGTGACAC
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
** * * *
3673182 CAAAGCATCAATGTC-AGTATCCTAATCAAGGGAATATTTTTTAGGTTCCC-ATCCTGAAAATAA
196 CAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAA
* * * * * *
3673245 TGGAGACTATTATGAGAATTGATGCTTGTCTTATCTATGGAATGAA-TTATGATTTTAAGGAAAA
261 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT-TGATTTTAAGGAAAA
* * * ** *
3673309 TAAGTCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATGATTTATCCTAATGAGGGGAT
325 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
* * * *
3673373 TGTACTTATAGTGCCTAATCGCAAAATGGATGAAGATCATT-CTTAGAATCCATATTTGTCTCAT
390 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC-TAGAATCCATGTTTGTCTCAT
* *
3673437 TTGAGGTGA-AAACTTAGACTTTA
454 TTGAGG-CACGAACTTAGACTTTA
* * * * ** *
3673460 C-AAAATTGGTGGGAAAAATTCCTTTGTTGCAAAACCAAAACATCAATATCGTACATTCTAATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * * * ** **
3673524 GGAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAACATGACAATTCATGTTTGT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * ** * * *
3673589 CTTATTTAAGACATAAACTTTGATTCCACCAAAAACTATGGAAAGAAAAGCTTTTTTTGTGACGC
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* ** * ** * * *
3673654 CAAAGCGTCAATGTCATTTGTCCTATTGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
196 CAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAA
* ** * * * * **
3673719 TGGAGATTGTTATAAGAATCGATGATTGTC-TAATTGAGGAGATAAACTTTGGCTTTAAGGAAAA
261 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTAAGGAAAA
* * * **
3673783 TAGGGCAAAGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATGATTTATCCTAATGGGGGGAA
325 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
* * * *
3673848 TGTGCTTATAGTACCTAATTACAAAGTGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATT
390 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
*
3673913 TGAGGCACAAACTTAGACTTTA
455 TGAGGCACGAACTTAGACTTTA
* * * *** *
3673935 CAAAAATTGGTGGGAAAAA-GGC---CTTGCGAAACTAAAACATCAATATCGCACATCCTAATCA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * * * **
3673996 GGAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGACAATTCATGTTTGT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * * *
3674061 TTTATTTAAGAAACAAACTTTGATTATACCAAAAACTGTGGAAAGAAATGCTTTTCTTGCGATC-
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CA
* * * * *
3674125 TCAAAGCATCAATGTTAGGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
195 CCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATA
* * * * * *
3674190 ATGGAGATTGTTATGAGATTCGATTCTT-CCTTATTTAAGGGTTGAACTTTGATTTTAAGGAAAA
260 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * *
3674254 TAGGGTAGAGAAAAGATTTTCATGCAAAAGAAAATCATCAGTATCATTTATCCTTATGAGAAGAA
325 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
*
3674319 TGTGCTTATA-TAGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
390 TGTGCTTATAGT-GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * *
3674383 TTGGGGCAAGAAGTTCGACATTA
454 TTGAGGCACGAACTTAGACTTTA
* * *
3674406 CAAAAATTGGTAGGAAAAATGCCTTTCTTGCTAAGCCAAAGCATCAATATCGTGTATCCTAATGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * *
3674471 GAAGACCATGTTTATGGTGCCTAAT-CTCAAAAAGAATGGGGATTAGAATGAGTATTCACGTTTG
66 GAAGACCATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * *
3674535 TCTTATTTAAGAGATTAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCATGCGAC
130 TCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
** * *
3674600 ACCAAAGCATCAATGTC-AGTATCCTAATCAAGGGAATGTTTTTTAGGTT-CCTATGC-TGAAAA
194 ACCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAAT-CTTGAAAA
* * * * *
3674662 TAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATCTATGGAATGAA-TTATGATTTTAATGA
258 TAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT-TGATTTTAAGGA
* * **
3674726 AAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATGATTTATCCTAATGAGGG
322 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAA
* * *
3674791 GAATGTGCTTATAGTGCCTTATCAAAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTC
387 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
*
3674856 ATTTGAGGCACAAACTTAGACTTTA
452 ATTTGAGGCACGAACTTAGACTTTA
* * * * * * *
3674881 CAAAATTTGCTAGGAAAAATGCCTTTCTTGTGAAACCAAAGCGTCAATATCATGTATCCTAATCA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * * * * *
3674946 GAAAACTATGTTTATGGTGCCTAATCATAAAAAGAATGGGGATTAGTATGTGTATTCATTTTTGT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* ** * *
3675011 CTTATTTAATAGACAAACTTTGATTCTATCAAAAGTGGTAGAAAGAAAAGCTTTTCTTACGACAC
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * *
3675076 CAAAGCGTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAA-CTACGAAAATA
196 CAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCT-TGAAAATA
* * * * * *
3675140 ATAGAGACTGCTACGAGAATCGATGCTCGTCATATTTAAGGGATAAACTTTGATTATAAGGAAAA
260 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * ** *
3675205 TATGGCAAAGAAAAGATTTCCTTCCAAAAGAAAATCATTAATATCACCTATCCTAATGAAAAGAA
325 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
* * * *
3675270 TGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTTCTAAAATCCATGTTTGTCTCATT
390 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
3675335 TGAGGCACGAACTTAGACTTTA
455 TGAGGCACGAACTTAGACTTTA
* * * ** * * *
3675357 CAAAAATTAGTGGGGGAGAA-GCCTTTCTTGTAAAAACGAAGCATCAATATCGTGTATCCTAATA
1 CAAAAATTGGT-GGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATG
* * * * * * * *
3675421 AGAAGACTATGTTTATAGTGCCTAATCCCGAAAAGAATAGGGATTATTGTGAATGTTCATGTTTG
65 AGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * *
3675486 TCTTATTTAAGAGATAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACA
130 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * * * * * *
3675551 CCAAAGCATCACTGGTCAAGTTTCCTAAAGAAAGGATTGTGTTTTAGGTTCCCATTCCTAAAAAT
195 CCAAAGCATCAAT-GTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAT
* * *
3675616 ATTGGAGACTGTAACGAGAATCGATGCTTGTCTTATTT-AGGAGATGAACTATGATTTTAAGGAA
259 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTAAGGAA
* * * * *
3675680 AACAGGGTAAAGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTATGCTAATGAGGAG
323 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAG
* *** * * *
3675745 AATGTGCTTAGAGTAAGTAATCACAAAATGAATGAAAATCATTACTAGAATCCATGTTTATCTTA
388 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
*
3675810 TTTGAGGCATGAACTTAGACTTTA
453 TTTGAGGCACGAACTTAGACTTTA
* * * * *
3675834 CAAAAATAGGTGGGAAAAATGCCTTTCCTACGAAACCAAAGCA-CTAATATTGTGTATCTTAATG
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAATG
* * * * * * * *
3675898 AGAAGACTATGTTTATAGTGCCTAATTCTTAAAAAAAGGGGGATTAATATGAGTATTCATCTTTG
65 AGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * * * *
3675963 TCTTATGTAAGAGATAAACTTTGATTCAATTAAAAATGATGGAAAGAAAAGCTTTTCTTGCGACA
130 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * * *
3676028 CCAAAGCATCAATGTCAAGTACCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAATCTTGAAAGTA
195 CCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATA
* * * * * *
3676093 TTGGAGATTGTAACAAGAATCGATGCTTGTCTTATTTAAGAGATGAACTATGATTTTAAGGAAAA
260 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * * *
3676158 TAGAGCAATGAAAAGATTTTCATGCAAAAGAAAATCATCAATATGATTTATCCTAAGGAGGAGAA
325 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
*
3676223 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTGTCATT
390 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
** *
3676288 TGACACACGAACTTAGATTTTA
455 TGAGGCACGAACTTAGACTTTA
* * *
3676310 CAATAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCA-CTAATATCGTGTATCCTAATG
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC-AATATCGTGTATCCTAATG
* * *
3676374 AGAAGACTATGTTTATAGTGCCTAATCCT-AAAAGAAATGGGGATTAGTATGAG---TCTTGTTT
65 AGAAGACCATGTTTATGGTGCCTAATCCTGAAAAG-AATGGGGATTAGTATGAGTATTCATGTTT
*
3676435 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGAC
129 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * ** * ** *
3676500 ACCAAGGCACCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTAGGAGCCCAATCCTGAAAAT
194 ACCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAAT
* * * * * * * * * *
3676565 ATTGTAGACTATTACAAGAATCAATACTTGTTTTGTTTAAGGGTTGAATTTTGATTTTAAGGAAA
259 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
* * * * * *
3676630 ATATGACAAAGAAAAGATTTTCATGCAGAAGAAAATCATCAATATTATTTATCCTAATGAGGAGA
324 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGA
* * *
3676695 ATGTGCTTATAGTGCCTAATCACAAAATGAATAAAGACCATTACTAGAATCCATGGTTGTCTCAT
389 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
*
3676760 TTGAGGCACGAACTTAGGCTTTA
454 TTGAGGCACGAACTTAGACTTTA
* * * * * * *
3676783 CAGAAATTGGTGAGAAAAATGCCTTTCTTGCAAAACGAAAACATCAATATCATGTATCCTATTGA
1 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * * ** *
3676848 GAAGACCGTGTTAATGGTGCATAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTAT
66 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * **
3676913 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACTGTGGAAAGAAAAGCTTTTTTTATGACAC
131 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * *
3676978 TAAAGCATCAATGTCATGCATCCTAATGAA-CGACATGTGTTTTAGGTTCCCAATCTTGAAAATA
196 CAAAGCATCAATGTCAAGTATCCTAAAGAAGGGA-ATGTGTTTTAGGTTCCCAATCTTGAAAATA
* * * * * *
3677042 ATAGAAACTGCTACAAGAATCTG-TGCTTGTCTTATTTAAGGGATAAACTTTGATTATAAGGAAA
260 ATGGAGACTGTTACGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
* * * * * *
3677106 ATAGGGCAAAAAAAAAGATTTTCTTGCAAAA-AAAATCATTAATATCATTTATCCTAATGAAAAT
324 ATAGGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAG
* * * * *
3677170 AATGTGTTTGTAGTGCCTAATCTCAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTTA
388 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* *
3677235 TTTAAGGCACAAACTTAGACTTTA
453 TTTGAGGCACGAACTTAGACTTTA
*
3677259 CAAAAATTGGTGGGGAAAAA-GCCTTTCTTGC-AAGACCGAAGCATCAATATCGTGTATCCTAAT
1 CAAAAATTGGT-GGGAAAAATGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTAAT
* *
3677322 GAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
64 GAGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * *
3677387 -ACTTTTTTGAGAGACAAACTTTGATTCTATCAA
129 GTCTTATTTAAGAGACAAACTTTGATTCTATCAA
3677420 TGTTTGTCTT
Statistics
Matches: 6675, Mismatches: 977, Indels: 195
0.85 0.12 0.02
Matches are distributed among these distances:
461 72 0.01
462 91 0.01
463 89 0.01
464 133 0.02
465 1 0.00
466 3 0.00
467 2 0.00
468 1 0.00
469 1 0.00
470 3 0.00
471 172 0.03
472 414 0.06
473 675 0.10
474 373 0.06
475 1952 0.29
476 1823 0.27
477 440 0.07
478 428 0.06
479 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGA
GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
CAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAA
TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAAT
GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
GAGGCACGAACTTAGACTTTA
Found at i:3679435 original size:476 final size:475
Alignment explanation
Indices: 3678215--3682708 Score: 5016
Period size: 476 Copynumber: 9.5 Consensus size: 475
3678205 CTTATTTAGG
** * * *
3678215 GGAATGTGTTTTTTGTTCCCAATCTTGAAAAGAGTGGAGATTGTTACGAGAATCGATGTTTGTCT
1 GGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * * *
3678280 TATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGTGCAAAA-AA
66 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * *
3678344 AATCATCAATATCACTTATCATAATGAGGATAATGTGCTTATAATGCCTAATCACAAAAAGAATA
131 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-A
* * * * * *
3678409 -AAGATCGTTACTAGAATCCACGTTTGTCTCATTTAAGGCACGAACATAGACTTTATAAAAATTG
195 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
* * *
3678473 GTGGGGAAAAAGCCTTTCTTG-AGAAACCAAAGCATCAATATCGTGTATGCTAATAAGAGGACTA
260 GT-GGGAAAAAGCCTTTCTTGCA-AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * * * * *
3678537 TGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGCA-CAATATTCTTGTTTGTCTTATTTA
323 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
3678601 GGAGACAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCTTTT-TCTGTGACCCCAAAGCA
388 AGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCT-TGCGACACCAAAGCA
* *
3678665 TCAATGTCATGAATCC-AAATGAAG
452 TCAATGTCATGTATCCTAAA-GAAA
* * * * * * *
3678689 GGAATGTGTTTTTGGCTCCTAATCATG-AAAGAATGGAGATTGCTACGAGAATCGATACTTGTCT
1 GGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * *
3678753 TATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTCCATGCAATAGAA
66 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * *
3678818 AATCATCAATATCATTTATCCAAATTAGGATAACGTGTTTATAGTGCCTAATCACAAAGTGAAGG
131 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAG
* * ** * *
3678883 AAGATCATTACTAGAATCCATGTTTGTCTCTTTTAAGGCACGGACTTTGAATTTACAAAAATTGG
196 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGG
* * * *
3678948 TGGAAAAAAAGCCTTTCTTGCAAAACTAAAGCACCAATATCTTGTATCCTAATGAGAAGACTATG
261 TGG-GAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATG
* * * *
3679013 TTTATTGTGCCTAATATTGAAAAGAATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAG
325 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * *
3679078 ACACAAACTTTGATTCTATCAGAAACGGTGGAACGAAAAGCTTTTCTTGCGACACCAAATCATTA
390 AGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
3679143 ATGTGAAGTATCCTAAAGAAA
455 ATGTCATGTATCCTAAAGAAA
* *
3679164 GGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAAATTGTTACGAGAATCGATGCTTGTCT
1 GGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * * * ***
3679229 TATTTAAAGGATGAACTATGATTTTAAGCAAAATAGGGCAAAGAAAAGATTACCATGCTGTAGAA
66 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * *
3679294 AATCATAAATATCATTTATCCTAAAGAGAATAATGTGTTTACAGTGCCTAATTACAAAAATGAAA
131 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAAA
* * ** **
3679359 GAAGATCATCACTAGAATCAATGTTTGTCTCATTTGAGGCATGAACTTAGACTTCGCAATAAA-T
195 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAA-AAATT
* * * * * *
3679423 AGTAGGAAAAAGCCTTTCTTGCAAAAGCAAAGCTTTAATATCGTGTATCCTGATGAGAAGACTAT
259 GGTGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
* * * * * * * * *
3679488 GTTTATGGTGCCTAATCTTGAAAAAAATAGGGAATAGTGTGAGTGTTCACGTTTGCCATATTTAA
324 GTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * * * *
3679553 GAGACAAACTTTGATTTTATCAAAAACTATGGGAAGAAAAAGCTTTTCTTGCAACTCTAAAGCAT
389 GAGACAAACTTTGATTCTATCAAAAACGATGGAAAG-AAAAGCTTTTCTTGCGACACCAAAGCAT
* * * ** *
3679618 TAATGTCAGGTATCTTATTGAAG
453 CAATGTCATGTATCCTAAAGAAA
* * * * * * * *
3679641 GGAAT-TGGTTTTTGGTTCCCGATCCTGAAAATAATGGAGACTATTACAAGAATCGATACTTGTT
1 GGAATGT-GTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTC
* * * * * *
3679705 TTATTTAAGGGTTGAATTTTGATTTTAAGGAAACTAGGGTAAAGAAAATATTTCCATGCGAAAGA
65 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * *
3679770 AAATCATCAATATGATTTATCCTAATGAGGAGAATGTGCTTATAGTTCTTAATCACAAAATGAAT
130 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAA
* * *
3679835 GAAGATCATTACTTGAATCCATGTATGTCTCATTTGAGGCACAAACTTAGACTTCACAAAAATTG
195 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
* * * * *
3679900 GTGGG---AATCCTTTCTTGCGAAACCAAAACATCAATATCGAGTATCCTAATTAGAAGACTATG
260 GTGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATG
* * * * *
3679962 GTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTATTTTATTTAAG
325 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * * *
3680027 AAATAAACTTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGTGACACCAAGGCCTCA
390 AGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *** *
3680092 ATGTCATCTATCCTATTTAAG
455 ATGTCATGTATCCTAAAGAAA
* * *
3680113 GGGATGTGTTTTTGGTTCCTC-ATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGCTTGTC
1 GGAATGTGTTTTAGGTTCC-CAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTC
* * * * *
3680176 TTATTTACGGGATGAACTTTGATTTTAAGGGAAATAAGGCAAAGAAAAGATTTCTAGGCAAAAGA
65 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * ** * *
3680241 AAATCATCACTATCACTTATCCTAATGAAAAGATTGTGTTTATAGTGCCTAATCACAAAATGAAT
130 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAA
* * * * *
3680306 GAGGATCATTACTAGAATACGTATTTGTCTCATTTGAGGAACAAACTTAGACTTTACAAAAATTG
195 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
* * * *
3680371 GTGGGAAAATTA-CCTTTCTTGCAAAAGCAAAACATCAATATCGTGTATCCAAATGAGAAGAATA
260 GTGGGAAAA--AGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * *
3680435 TGTTTATGGTGCCTAATCTTGAAAACAATGGAGATTAGTATGA-TAATTCATGTTTTTCTTATTT
323 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACT-ATTCATGTTTGTCTTATTT
* * * *
3680499 ATGAGACAAACTTTGATTCCATCAAAAACTG-TGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGC
387 AAGAGACAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * **
3680563 ATCATTGTCATTTATCCTATTG-AA
451 ATCAATGTCATGTATCCTAAAGAAA
* ** * *
3680587 GAGAATGTGTTTTTGGTTCCCAATCTTGAAACGAATGAAGATTGTTACAAGAATCGATGCTTGTC
1 G-GAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTC
* * * * *
3680652 TTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCTAAGAAAAGATTTCTAGGCAAAAAA
65 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * ** ** * * *
3680717 AAATCATTAGTATCGCTTATCCTAATGAAAAGATTGTGTTTGTAGTACCTAATCACAAAAT-AAA
130 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAA
* * * *
3680781 TGAGGATCATTACTAGAATACATGTTTGTCTCATTTGAGCCACGAACTTAGACTTTACAAAAATT
195 -GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATT
* ** ** *
3680846 GGTGGGAAAAATGCCTTTTTTGTGAAACCAAAATATCAATATCGTGTATCCTAATGAGAAGACCA
259 GGTGGGAAAAA-GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * * * * *
3680911 TGTTTATGGTGCCTTATCCTAAAAAGATTAGCGATTAGTATGACTATTCATGTTTGTCTTATTTA
323 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * *
3680976 AGAGACAAACTTTAATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTACAACACCAAAGTAT
388 AGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
** *
3681041 TGATGTCAAGTATCCTAAAGAAA
453 CAATGTCATGTATCCTAAAGAAA
* * * *
3681064 GGAATGTGTTTTAGGTTCCTAATCTTGAAAATATTAGAGACTGTTACGAGAATCGATGCTTGTCT
1 GGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * ** * *
3681129 TATTTAAGGGATGAACTATCATTTTACTGAAAATAGGGCAAATAAAAGATTTCCATGTAAAAGAA
66 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* ** * * *
3681194 AGTCATCAATAAGATTTATCCTAACGAGGAGAATGTGCTTATAGTGCCTAATCACAGAATGAATA
131 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-A
* *
3681259 -AAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTA
195 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
* * * * *
3681323 GTGGGGGAGAAGCCTTTCTTGTAAAAACGAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
260 GT-GGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
* * * *
3681388 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACAATTCATGTTTGTCTTCTTTAA
324 GTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * * ** *
3681453 TAGGA-AAATTTTGATTCCATCAAAAACGATGGAAAGAAAAGCTTTTGTCACGACACCAAGGCAT
389 GA-GACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* *
3681517 CAATGTCATGTATCCTATTA-AAG
453 CAATGTCATGTATCCTA-AAGAAA
* * * * * * *
3681540 GGAATGTGTTTCAGGTTCTCAATCCTGAAAATAATGGAGACTATTACAAGAATCGATAG-TTGTT
1 GGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGAT-GCTTGTC
* * * * *
3681604 TTATTTAAGGGTTGAATTTTGATTTTGAGGAAAGTAGGGCAAAGAAATGATTTCCATGCAAAAGA
65 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
3681669 AAATCGTCAATATCATTTATCCTAATGAGGATAATGTGCTTATAGTGCCTAATCACAAAATGAAT
130 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAA
* * * *
3681734 GAAAATTATTACTAGAATCCATGTTTATCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTG
195 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
* * * * ** *
3681799 GCGAGAAAAATGCCTTTCTTGCGAAACCAAAACA-CAAATATCGCAT-TCCTAATGAGAGGACTA
260 GTGGGAAAAA-GCCTTTCTTGCAAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACTA
* *
3681862 TGTTTACGGTGCCTAATCTTGAAAAGAATGGGGAGTAGTATGACTATTCATGTTTGTCTTATTTA
323 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * *
3681927 AGAGACAAAATTTGATTCTATCAAAAACGATGGAAACAAAAGCTTTTCTTGC-AGCACCAATGCA
388 AGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCA
* * *
3681991 TCAGTTTCATGTATCCTATTGGAGAAA
452 TCAATGTCATGTATCCTA---AAGAAA
* * * * * *
3682018 --ATTTTGTTTTAGGTTCCTAATCTTGAAAATAATGGATGCA--ATTACGAGAATTGATGTTTGT
1 GGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGA-G-ATTGTTACGAGAATCGATGCTTGT
** ** * *
3682079 CTTATTTAAGCAAAAAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTAT-CGTGCAATA
64 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT-TCCATGCAA-A
* * *
3682143 A-AAAATCATCAATATCATTTATCCTAATTAGGAGAATGCGTTTATAGAT-CCTAATCATAAAAT
127 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCACAAAAT
* **
3682206 GAAAGAAGATCATTACTAGAATCTACATTTGTCTCATTTGAGG--C--AC--A-A----AC----
191 GAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAA
* * *
3682256 ATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAAAATCATGTATCCTAATGAGAAGA
256 ATTGGTGGG-AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGA
* * * *
3682321 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATCAGTGTGAGTATTCAAGTTTGTCTTAT
320 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * * * * *
3682386 TTAAGAGACAAGCTTTGATTCTATAAAAAATGATGGAACGAAAAGCTTTTCTTGTGACACGAAAG
385 TTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* *
3682451 CATCAATATCAAGTATCCTAAAGAAA
450 CATCAATGTCATGTATCCTAAAGAAA
* * * * *
3682477 GGAATGTGTTTTATGTTCCCAATCCTGAAAAATAACGAAGATTGTTATGAGAATCGATGCTTGTC
1 GGAATGTGTTTTAGGTTCCCAATCTTG-AAAATAATGGAGATTGTTACGAGAATCGATGCTTGTC
* ** *
3682542 TAATTTAAGGGATGAACTACGATTTTAAGCAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
65 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * ** * * *
3682607 AATTCATAAATATCATTTGTCCTAGGGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGGAA
130 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAA
* *
3682672 GAAGATCATTACTAGAATCAATGTCTGTCTCATTTGA
195 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
3682709 AGAAAAATGC
Statistics
Matches: 3396, Mismatches: 561, Indels: 138
0.83 0.14 0.03
Matches are distributed among these distances:
459 5 0.00
460 1 0.00
461 59 0.02
462 311 0.09
463 1 0.00
465 2 0.00
469 1 0.00
470 1 0.00
471 179 0.05
472 86 0.03
473 223 0.07
474 231 0.07
475 492 0.14
476 1521 0.45
477 276 0.08
478 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
GGAATGTGTTTTAGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAG
AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGG
TGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGT
TTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTAAAGAAA
Found at i:3683316 original size:13 final size:13
Alignment explanation
Indices: 3683298--3683325 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3683288 TACATAAAAT
3683298 ATTGTATCGATAC
1 ATTGTATCGATAC
3683311 ATTGTATCGATAC
1 ATTGTATCGATAC
3683324 AT
1 AT
3683326 AAGTTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:3683316 original size:33 final size:32
Alignment explanation
Indices: 3683279--3683343 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
3683269 TTTCAACGAT
3683279 TTGTATCGATACATAAAATATTGTATCGATACA
1 TTGTATCGATACAT-AAATATTGTATCGATACA
* *
3683312 TTGTATCGATACATAAGTTTTGTATCGATACA
1 TTGTATCGATACATAAATATTGTATCGATACA
3683344 ATTTAAGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.38
Consensus pattern (32 bp):
TTGTATCGATACATAAATATTGTATCGATACA
Found at i:3683402 original size:13 final size:13
Alignment explanation
Indices: 3683384--3683410 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3683374 ACATTACTCA
3683384 AATGTATCGATAC
1 AATGTATCGATAC
3683397 AATGTATCGATAC
1 AATGTATCGATAC
3683410 A
1 A
3683411 CTGATCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:3683475 original size:20 final size:20
Alignment explanation
Indices: 3683450--3683503 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
3683440 ATTTGCCCAG
3683450 ATGTATCGATACATTATAAA
1 ATGTATCGATACATTATAAA
3683470 ATGTATCGATACATTATAAA
1 ATGTATCGATACATTATAAA
3683490 ATGTATCGATACAT
1 ATGTATCGATACAT
3683504 GCAAGCAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACATTATAAA
Found at i:3683514 original size:72 final size:72
Alignment explanation
Indices: 3683419--3683555 Score: 256
Period size: 72 Copynumber: 1.9 Consensus size: 72
3683409 CACTGATCTT
* *
3683419 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAATGTATCGATACAT
1 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAATGTATCGATACAT
3683484 TATAAAA
66 TATAAAA
3683491 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAATGTATCGATACAT
1 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAATGTATCGATACAT
3683556 GCAGGCAAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (72 bp):
TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAATGTATCGATACAT
TATAAAA
Found at i:3697360 original size:12 final size:11
Alignment explanation
Indices: 3697341--3697392 Score: 63
Period size: 11 Copynumber: 4.7 Consensus size: 11
3697331 TCCTCCACAA
3697341 AAAAAAAACAG
1 AAAAAAAACAG
*
3697352 AAGAAAAAAAAG
1 AA-AAAAAACAG
3697364 AAAAAAAACA-
1 AAAAAAAACAG
3697374 AAACAAAAA-AG
1 AAA-AAAAACAG
3697385 AAAAAAAA
1 AAAAAAAA
3697393 AACAACAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
10 9 0.25
11 17 0.47
12 10 0.28
ACGTcount: A:0.87, C:0.06, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAG
Found at i:3697367 original size:21 final size:21
Alignment explanation
Indices: 3697341--3697400 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
3697331 TCCTCCACAA
*
3697341 AAAAAAAACAGAAGAAAAAAAAG
1 AAAAAAAACA-AA-ACAAAAAAG
3697364 AAAAAAAACAAAACAAAAAAG
1 AAAAAAAACAAAACAAAAAAG
3697385 AAAAAAAA-AACAACAA
1 AAAAAAAACAA-AACAA
3697401 CAACAAAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
20 2 0.06
21 21 0.60
22 2 0.06
23 10 0.29
ACGTcount: A:0.85, C:0.08, G:0.07, T:0.00
Consensus pattern (21 bp):
AAAAAAAACAAAACAAAAAAG
Found at i:3697393 original size:23 final size:22
Alignment explanation
Indices: 3697339--3697409 Score: 88
Period size: 23 Copynumber: 3.1 Consensus size: 22
3697329 CGTCCTCCAC
* *
3697339 AAAAAAAAAACAGAAGAAAAAA
1 AAAAAAAAAACAAAACAAAAAA
3697361 AAGAAAAAAAACAAAACAAAAAA
1 AA-AAAAAAAACAAAACAAAAAA
*
3697384 GAAAAAAAAAACAACAACAACAAA
1 -AAAAAAAAAACAA-AACAAAAAA
3697408 AA
1 AA
3697410 GGGTCCGGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 2 0.05
23 31 0.72
24 10 0.23
ACGTcount: A:0.85, C:0.10, G:0.06, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAACAAAACAAAAAA
Found at i:3698956 original size:86 final size:86
Alignment explanation
Indices: 3698838--3698998 Score: 234
Period size: 86 Copynumber: 1.9 Consensus size: 86
3698828 CATTCCTCAC
** * * *
3698838 CCTTCAAAAGCCCACATGTTAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTTCA
1 CCTTCAAAAGCCCACAAATCAGTGGCACCTTTTCCAAAGCCCACAAGTCAGTGGCATCTTTTTCA
*
3698903 AAGTCCACAAGTTAGTGGCAA
66 AAGCCCACAAGTTAGTGGCAA
* *
3698924 CCTTC-AAAGCCCACAAATCAGTGGCACCCTTTTCCGAAGCCCACAAGTCGGTGGCATCTTTTTC
1 CCTTCAAAAGCCCACAAATCAGTGGCA-CCTTTTCCAAAGCCCACAAGTCAGTGGCATCTTTTTC
3698988 AAAGCCCACAA
65 AAAGCCCACAA
3698999 CTCCATGGCA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
85 18 0.27
86 48 0.73
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (86 bp):
CCTTCAAAAGCCCACAAATCAGTGGCACCTTTTCCAAAGCCCACAAGTCAGTGGCATCTTTTTCA
AAGCCCACAAGTTAGTGGCAA
Found at i:3698966 original size:30 final size:29
Alignment explanation
Indices: 3698844--3699017 Score: 192
Period size: 29 Copynumber: 6.0 Consensus size: 29
3698834 TCACCCTTCA
* *
3698844 AAAGCCCACATGTTAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
3698873 AAAGCCCACAAGTCAGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * * *
3698902 AAAGTCCACAAGTTAGTGGCAAC--CTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
* * *
3698929 AAAGCCCACAAATCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
* *
3698959 GAAGCCCACAAGTCGGTGGCATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCATCTTTTTC
*
3698988 AAAGCCCACAACTCCA-TGGCACTCTTTTTC
1 AAAGCCCACAAGT-CAGTGGCA-TCTTTTTC
3699018 TATCTAAGTC
Statistics
Matches: 120, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
27 21 0.17
28 1 0.01
29 69 0.57
30 29 0.24
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATCTTTTTC
Found at i:3699034 original size:34 final size:33
Alignment explanation
Indices: 3698993--3699177 Score: 163
Period size: 34 Copynumber: 5.7 Consensus size: 33
3698983 TTTTCAAAGC
*
3698993 CCACAACTCCATGGCACTCTTTTTCTATCTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCT-TCTAAGT
*
3699027 CCACAACTCTGTGGCAC-C-----CGTT-TAAG-
1 CCACAACTCCGTGGCACTCTTTTTC-TTCTAAGT
*
3699053 CGCACGACTCCGTGGCACTCTTTTTCCTTCTAAGT
1 C-CACAACTCCGTGGCACTCTTTTT-CTTCTAAGT
* * *
3699088 CCATAACTCCGTGGCAC-CTTTTTCTTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTTC-TTCTAAGT
* *
3699121 CCACAACTCTGTGGCACTCTTTCTTTTTCTAAGT
1 CCACAACTCCGTGGCACTCTTT-TTCTTCTAAGT
* *
3699155 CCACAACTCTGTGGCACCCTTTT
1 CCACAACTCCGTGGCACTCTTTT
3699178 ACGTCCACAG
Statistics
Matches: 123, Mismatches: 14, Indels: 29
0.74 0.08 0.17
Matches are distributed among these distances:
26 1 0.01
27 18 0.15
28 3 0.02
29 1 0.01
32 1 0.01
33 31 0.25
34 65 0.53
35 3 0.02
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.35
Consensus pattern (33 bp):
CCACAACTCCGTGGCACTCTTTTTCTTCTAAGT
Found at i:3699071 original size:61 final size:60
Alignment explanation
Indices: 3698874--3699202 Score: 235
Period size: 61 Copynumber: 5.4 Consensus size: 60
3698864 ATCTTTTTCA
* * * * * **
3698874 AAGCCCACAAGTCAGTGGCA-TC--TTT-TTCAAAGTCCACAAGT-TAGTGGCAACCTTCA
1 AAGCCCACAACTCCGTGGCACTCTTTTTCTTCTAAGTCCACAACTCT-GTGGCACCCTTTT
* * * * * * * * *
3698930 AAGCCCACAAATCAGTGGCAC-CCTTTTC--CGAAGCCCACAAGTCGGTGGCATCTTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCTTCTAAGTCCACAACTCTGTGGCACCCTTTT
* *
3698987 CAAAGCCCACAACTCCATGGCACTCTTTTTCTATCTAAGTCCACAACTCTGTGGCACCCGTTT
1 --AAGCCCACAACTCCGTGGCACTCTTTTTCT-TCTAAGTCCACAACTCTGTGGCACCCTTTT
* * * *
3699050 AAGCGCACGACTCCGTGGCACTCTTTTTCCTTCTAAGTCCATAACTCCGTGGCACCTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTT-CTTCTAAGTCCACAACTCTGTGGCACC-----C-TT
3699115 TT
59 TT
* *
3699117 AAGCCCACAACTCTGTGGCACTCTTTCTTTTTCTAAGTCCACAACTCTGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTT-TTCTTCTAAGTCCACAACTCTGTGGCACCCTTTT
* * * *
3699178 ACGTCCACAGCTTCGTGGCA-TCTTT
1 AAGCCCACAACTCCGTGGCACTCTTT
3699203 CTCCTTTTCA
Statistics
Matches: 218, Mismatches: 36, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
56 20 0.09
57 21 0.10
58 3 0.01
59 18 0.08
60 11 0.05
61 67 0.31
62 3 0.01
63 22 0.10
66 1 0.00
67 50 0.23
68 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.16, T:0.30
Consensus pattern (60 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCTTCTAAGTCCACAACTCTGTGGCACCCTTTT
Found at i:3699285 original size:32 final size:32
Alignment explanation
Indices: 3699244--3699472 Score: 328
Period size: 32 Copynumber: 7.3 Consensus size: 32
3699234 AACTTTTTCT
*
3699244 TCTAAAGCCCACACAAGTTGGTGGCAACCCCC
1 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
3699276 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
1 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
3699308 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
1 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
3699340 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
1 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
** *
3699372 TCTAAAGCCCACACAAGGCGGTGGCAA-CCCT
1 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
*
3699403 TCTCAAAGCCCACACAAGTCGGTGGCAA---CC
1 TCT-AAAGCCCACACAAGTTGGTGGCAATCCCC
** *
3699433 -CTAAAGCCCACACAAGTCAGTGGCAA-CCCT
1 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
3699463 TCT-AAGCCCA
1 TCTAAAGCCCA
3699473 ATATCGCTGG
Statistics
Matches: 185, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
28 23 0.12
29 2 0.01
30 9 0.05
31 8 0.04
32 143 0.77
ACGTcount: A:0.29, C:0.36, G:0.19, T:0.16
Consensus pattern (32 bp):
TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
Found at i:3699523 original size:49 final size:49
Alignment explanation
Indices: 3699465--3699785 Score: 396
Period size: 49 Copynumber: 6.7 Consensus size: 49
3699455 GCAACCCTTC
* *
3699465 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
3699514 TAAGTCCAATGTAGTTGGCCTTGAATCAGTACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
3699557 TAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
3699606 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
3699649 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATATT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
3699698 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CTT-CATCTT
* * * *
3699750 TAAGTTCAATGTAGCTGGTCTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
3699786 ACATCCTTTT
Statistics
Matches: 234, Mismatches: 23, Indels: 27
0.82 0.08 0.10
Matches are distributed among these distances:
43 77 0.33
45 2 0.01
47 2 0.01
49 113 0.48
50 1 0.00
51 2 0.01
52 37 0.16
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:3699627 original size:92 final size:92
Alignment explanation
Indices: 3699460--3699741 Score: 474
Period size: 92 Copynumber: 3.1 Consensus size: 92
3699450 CAGTGGCAAC
* *
3699460 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
* *
3699525 TAGTTGGCCTTGAATCAGTACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
*
3699553 CCTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
3699618 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* *
3699645 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATATTTAAGTCCAATAT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
3699710 AGCTGGCCTTGAATCAGCATATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
3699737 TCTTT
1 CCTTT
3699742 TCCATCTTTA
Statistics
Matches: 179, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 175 0.98
93 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:3699774 original size:52 final size:52
Alignment explanation
Indices: 3699646--3699848 Score: 241
Period size: 49 Copynumber: 3.9 Consensus size: 52
3699636 ACATTGGCAC
*
3699646 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CTT-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCAT
*
3699695 ATTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCAT
* * * * *
3699747 CTTTAAGTTCAATGTAGCTGGTCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAT-C-TTTTC-CAT
* * * * * *
3699802 CTTTAAGCCCAATATCGTTGGTCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTT
3699849 ATCACTTTTC
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
49 41 0.31
50 1 0.01
51 2 0.02
52 40 0.31
53 4 0.03
54 6 0.05
55 37 0.28
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTCCAT
Found at i:3699824 original size:55 final size:55
Alignment explanation
Indices: 3699646--3700059 Score: 268
Period size: 52 Copynumber: 7.6 Consensus size: 55
3699636 ACATTGGCAC
* * *
3699646 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
3699695 ATTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAT-C-TTTTC-CAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
3699747 CTTTAAGTTCAATGTAGCTGGTCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
3699802 CTTTAAGCCCAATATCGTTGGTCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
3699867 AT
54 AT
* * *
3699869 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTC-TCAT
** * * * *
3699921 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * *
3699974 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
3700029 CTTTGAA-CCCAATATCGTTGGCCGTGAATCA
1 CTTT-AAGTCCAATATCGCTGGCCTTGAATCA
3700060 ACATATTGGT
Statistics
Matches: 294, Mismatches: 43, Indels: 50
0.76 0.11 0.13
Matches are distributed among these distances:
49 42 0.14
52 81 0.28
53 41 0.14
54 9 0.03
55 65 0.22
56 3 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.01
62 1 0.00
63 3 0.01
64 2 0.01
66 3 0.01
67 36 0.12
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:3699840 original size:107 final size:101
Alignment explanation
Indices: 3699646--3699848 Score: 244
Period size: 107 Copynumber: 2.0 Consensus size: 101
3699636 ACATTGGCAC
* * *
3699646 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATATTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTCATATTTAAGCCCAATATA
* *
3699711 GCTGGCCTTGAATCAGCATATTGGCATCTTTTCCAT
66 GCTGGCCGTGAATCAACATATTGGCATCTTTTCCAT
* * * *
3699747 CTTTAAGTTCAATGTAGCTGGTCTTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAGCCC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC----T-TCATATTTAAGCCC
* * *
3699812 AATATCGTTGGTCGTGAATCAACATATTGGCATCTTT
60 AATATAGCTGGCCGTGAATCAACATATTGGCATCTTT
3699849 ATCACTTTTC
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
101 37 0.44
102 2 0.02
106 1 0.01
107 44 0.52
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (101 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTCATATTTAAGCCCAATATA
GCTGGCCGTGAATCAACATATTGGCATCTTTTCCAT
Found at i:3699906 original size:67 final size:68
Alignment explanation
Indices: 3699798--3699924 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
3699788 ATCCTTTTTC
* * * *
3699798 TCATCTTTAAGCCCAATATCGTTGGTCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
3699862 TCT
66 TCT
* * * *
3699865 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
3699925 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:3699974 original size:53 final size:52
Alignment explanation
Indices: 3699865--3700068 Score: 158
Period size: 53 Copynumber: 3.8 Consensus size: 52
3699855 TTTCTCATCT
** * * * **
3699865 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCA-CCTTC
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC
* * * *
3699916 ATCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTC
1 -TCATCTTT-AAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC
* ** * * * *
3699970 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTC
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCA---TTTTTC
* * * *
3700025 TCATCTTTGAACCCAATATCGTTGGCCGTGAATCAACATATTGG
1 TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAGCACATTGG
3700069 TCTTTTTATC
Statistics
Matches: 120, Mismatches: 27, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
52 38 0.32
53 40 0.33
54 3 0.03
55 39 0.32
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAACCCAATATCGCTGGCCGTGAATCAGCACATTGGCATTTTTC
Found at i:3700042 original size:227 final size:224
Alignment explanation
Indices: 3699646--3700126 Score: 666
Period size: 227 Copynumber: 2.1 Consensus size: 224
3699636 ACATTGGCAC
* **
3699646 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATATTTAAGTCCAATATA
1 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATATTTAAACCCAATATA
* * ** *
3699711 GCTGGCCTTGAATCAGCATATTGGCATCTTTTCCATCTTTAAGTTCAATGTAGCTGGTCTTGAAT
66 GCTGGCCTTGAATCAGCACATTGGCATCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAAT
*
3699776 CAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGTCGTGAATCAACATATTG
131 CAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTG
** *
3699841 G-CATCTTTATCACTTTTC-TCATCTTCAT
196 GTC-TCTTTATCACTCCTCATCATCATCAT
3699869 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTTAAAACCCAA
1 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCAT-A--TTT-AAACCCAA
* * * *
3699934 TGTTGTTGGCCTTGAATCAGCACATTGGCAT-TTTTCTCATCTTCAAG-TCTAATGTCGCTGACC
62 TATAGCTGGCCTTGAATCAGCACATTGGCATCTTTTC-CATCTTCAAGTTC-AATGTAGCTGACC
3699997 GTGAATCAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCGTGAATCAA
125 GTGAATCAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCCGTGAATCAA
* *
3700061 CATATTGGTCTTTTTATCACTCCTCATCCTCATCAT
189 CATATTGGTCTCTTTATCACTCCTCATCATCATCAT
* * *
3700097 CTTTAAGTCCAATGTTGCAGGCCTCGAATC
1 CTTTAAGTCCAATATTGCTGGCCTTGAATC
3700127 TGCACAATGG
Statistics
Matches: 228, Mismatches: 21, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
223 48 0.21
224 1 0.00
226 10 0.04
227 131 0.57
228 38 0.17
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (224 bp):
CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATATTTAAACCCAATATA
GCTGGCCTTGAATCAGCACATTGGCATCTTTTCCATCTTCAAGTTCAATGTAGCTGACCGTGAAT
CAGCACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTG
GTCTCTTTATCACTCCTCATCATCATCAT
Found at i:3704390 original size:476 final size:475
Alignment explanation
Indices: 3703494--3704683 Score: 1692
Period size: 476 Copynumber: 2.5 Consensus size: 475
3703484 CAAATGTTTA
* * * *
3703494 TCTTATTTAAGCGATAAACATTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
1 TCTTATTTAAGGGATAGACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCA-GGAAAA
* ** * * * * *
3703559 GAAAATCATCAATATCATTTATCCTAATGAGGATAATGCGCTTATAGTGTCTAATCACAAAAAGA
65 GAAAATCATCAATATCACTTATCCTAATGAAAATATTGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
3703624 ATAAAGATCGTTACTAGAATCCATGTTTGCCTCATTTGAGGCACAAACTTAGACTTTACAAATAT
130 ATGAGGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAAT
* * ** **
3703689 TGGTGGGAAAAATACTTTTTTTACGAAACCAAAACATCAATATCATGTATCCTAAAGAGAAGACT
195 TGGTGGGAAAAATGCTTTTCTTGTGAAACCAAAACATCAATATCACATATCCTAAAGAGAAGACT
* * **
3703754 ATGTTGATGGTGCCTAATCCTGAAAAGAATGGGTATTAGTATGACAATTCATGTTTGTCTTTTTT
260 ATGTTGATGGTGCCTAATCCTGAAAAGAATGGGTATTAGTATGACAATTCATGATTATCTTTTCA
*
3703819 AAGAGACAAACTTTGATTCCATCAAAACCTATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
325 AAGAGACAAACTTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
3703884 TTAATGTCATGTATCTTATCGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGAT
390 TCAATGTCATGTATCCTATCGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGAT
3703949 TGTTACGAGAATCGATGCTTG
455 TGTTACGAGAATCGATGCTTG
*
3703970 TCTTATTTAAGGGATAGACTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGA-TTTCTAGGAAAA
1 TCTTATTTAAGGGATAGACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTC-AGGAAAA
* * *
3704034 GGAAAATCATTAATATCACTTATCCTATTGAAAAGATTGTGTTTATAGTGCCTAATCACAAAATG
65 -GAAAATCATCAATATCACTTATCCTAATGAAAATATTGTGTTTATAGTGCCTAATCACAAAATG
** *
3704099 AATGAGGATCATTACTAGAATTTATGTTTGTCTCATTTGAGGCACAAACATAGACTTTACAAAAA
129 AATGAGGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAA
* *
3704164 TTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATATCGCATATCCTAATA-AGAAGA
194 TTGGTGGGAAAAATGCTTTTCTTGTGAAACCAAAACATCAATATCACATATCCTAA-AGAGAAGA
* *
3704228 CTATGCTT-ATGGTGCCTAATCTTGAAAAGAATGGGTATTAGTCTGACAATTCATGATTATCATA
258 CTATG-TTGATGGTGCCTAATCCTGAAAAGAATGGGTATTAGTATGACAATTCATGATTATC-T-
* *
3704292 TTTCAAAG-GA-AAACTTTGATTCCATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGATC-TC
320 TTTCAAAGAGACAAACTTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCGA-CACC
* * * *
3704354 AAAGCATCAATGTCATGTATCCTCTTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
384 AAAGCATCAATGTCATGTATCCTATCGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAAT
*
3704419 GGAGATTGTTATGAGAATCGATGCTTG
449 GGAGATTGTTACGAGAATCGATGCTTG
* * *
3704446 TCTTATTTAAGGGAT-GAACTTTGATTTTAAGGAAAATAGAGCAAATAAAAGATTTTCAGGCAAA
1 TCTTATTTAAGGGATAG-ACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAGG-AAA
* * *
3704510 AGAAAATCATCAATATCACTTATCTTAATGAAAATATTGTATTTATAGTGCCGAATCACAAAATG
64 AGAAAATCATCAATATCACTTATCCTAATGAAAATATTGTGTTTATAGTGCCTAATCACAAAATG
* * * *
3704575 AATGAGGATCATTACTAGAATACGTGTTTGTTTCATTTGAGGCACGAACTTATACTTTACAAAAA
129 AATGAGGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAA
* *
3704640 TTGGTGGGAAAAATGCTTTTCTTGTAAAACCAAAGCATCAATAT
194 TTGGTGGGAAAAATGCTTTTCTTGTGAAACCAAAACATCAATAT
3704684 TGTAAGCTCA
Statistics
Matches: 636, Mismatches: 68, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
475 10 0.02
476 605 0.95
477 15 0.02
478 6 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (475 bp):
TCTTATTTAAGGGATAGACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAGGAAAAG
AAAATCATCAATATCACTTATCCTAATGAAAATATTGTGTTTATAGTGCCTAATCACAAAATGAA
TGAGGATCATTACTAGAATACATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATT
GGTGGGAAAAATGCTTTTCTTGTGAAACCAAAACATCAATATCACATATCCTAAAGAGAAGACTA
TGTTGATGGTGCCTAATCCTGAAAAGAATGGGTATTAGTATGACAATTCATGATTATCTTTTCAA
AGAGACAAACTTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
CAATGTCATGTATCCTATCGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGATT
GTTACGAGAATCGATGCTTG
Found at i:3705508 original size:20 final size:20
Alignment explanation
Indices: 3705482--3705536 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
3705472 TACCAGTTTC
*
3705482 ATGTATCGATACAATTGGGT
1 ATGTATCAATACAATTGGGT
*
3705502 GTGTATCAATACAATTGGGT
1 ATGTATCAATACAATTGGGT
3705522 ATGTATCAATACAAT
1 ATGTATCAATACAAT
3705537 GTATCGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
ATGTATCAATACAATTGGGT
Found at i:3744414 original size:13 final size:13
Alignment explanation
Indices: 3744396--3744420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3744386 ATTACTCACA
3744396 TGTATCGATACAT
1 TGTATCGATACAT
3744409 TGTATCGATACA
1 TGTATCGATACA
3744421 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3744472 original size:32 final size:32
Alignment explanation
Indices: 3744431--3744504 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
3744421 CTAATCTTTG
*
3744431 TATCGATACATGCAGGTAAATTTGCCCAGATC
1 TATCGATACATGCAGGCAAATTTGCCCAGATC
*
3744463 TATCGATACATGCAGGCAAATTTGCCCAGATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATC
3744495 TATCGATACA
1 TATCGATACA
3744505 CTATTAAATG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (32 bp):
TATCGATACATGCAGGCAAATTTGCCCAGATC
Found at i:3752478 original size:84 final size:84
Alignment explanation
Indices: 3752363--3752596 Score: 220
Period size: 84 Copynumber: 2.8 Consensus size: 84
3752353 CCTTGTTCAG
* * * * * * *
3752363 ACAAGCTTATCCATTTTA-TCTTCACATATGTCAACTTTAGGCATTGTATTATCAAAACAACGTT
1 ACAAACTTATCCATTTTACT-TTAACACATGTCTACTTTAGACATTATATTATCAAAACAACCTT
* *
3752427 ATTAATATTGTCTTATTAAG
65 ATCAATATTGTCTTATTAAA
* * * * * **
3752447 ACAAGCTTAAT-CATTTTGCTTTAACACATGTCTACTTTAAACATTATCTTGTTTAAACAACCTT
1 ACAAACTT-ATCCATTTTACTTTAACACATGTCTACTTTAGACATTATATTATCAAAACAACCTT
*
3752511 ATCCATATTGTCTTATTAAA
65 ATCAATATTGTCTTATTAAA
* ** * * * *
3752531 ACAAACTTATCCATTTTATTTTAGTACATGTCTACTTTAGACATTTTCTTATTAAGACAACCTTA
1 ACAAACTTATCCATTTTACTTTAACACATGTCTACTTTAGACATTATATTATCAAAACAACCTTA
3752596 T
66 T
3752597 TTGCCTTGTC
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
83 2 0.02
84 117 0.96
85 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (84 bp):
ACAAACTTATCCATTTTACTTTAACACATGTCTACTTTAGACATTATATTATCAAAACAACCTTA
TCAATATTGTCTTATTAAA
Found at i:3752625 original size:84 final size:84
Alignment explanation
Indices: 3752341--3752625 Score: 209
Period size: 84 Copynumber: 3.4 Consensus size: 84
3752331 AGACAATTTT
* * * * * * * **
3752341 TTATCCACATTGCCTTGTTCAGACAAGCTTATCCATTTTA-TCTTCACATATGTCAACTTTAGGC
1 TTATCCACATTGTCTTATTAAGACAAGTTTATCCATTTTACT-TTAACACATGTCTACTTTAAAC
* * * *
3752405 ATTGTATT-ATCAAAACAACG
65 ATTATCTTGAT-TAAACAACC
** * * *
3752425 TTATTAATATTGTCTTATTAAGACAAGCTTAAT-CATTTTGCTTTAACACATGTCTACTTTAAAC
1 TTATCCACATTGTCTTATTAAGACAAG-TTTATCCATTTTACTTTAACACATGTCTACTTTAAAC
*
3752489 ATTATCTTGTTTAAACAACC
65 ATTATCTTGATTAAACAACC
* * ** * ** *
3752509 TTATCCATATTGTCTTATTAAAACAAACTTATCCATTTTATTTTAGTACATGTCTACTTTAGACA
1 TTATCCACATTGTCTTATTAAGACAAGTTTATCCATTTTACTTTAACACATGTCTACTTTAAACA
*
3752574 TTTTCTT-ATTAAGACAACC
66 TTATCTTGATTAA-ACAACC
*** * *
3752593 TTATTTGCCTTGTCTTATTAAGATAAGTTTATC
1 TTATCCACATTGTCTTATTAAGACAAGTTTATC
3752626 AGCATTATCT
Statistics
Matches: 155, Mismatches: 41, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
83 7 0.05
84 143 0.92
85 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.42
Consensus pattern (84 bp):
TTATCCACATTGTCTTATTAAGACAAGTTTATCCATTTTACTTTAACACATGTCTACTTTAAACA
TTATCTTGATTAAACAACC
Found at i:3755726 original size:13 final size:13
Alignment explanation
Indices: 3755708--3755733 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3755698 ACAATTTTTG
3755708 TGTATCGATACAT
1 TGTATCGATACAT
3755721 TGTATCGATACAT
1 TGTATCGATACAT
3755734 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3755730 original size:32 final size:32
Alignment explanation
Indices: 3755689--3755751 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
3755679 TACAAGCCAA
**
3755689 TGTATCGATACAATTTTTG-TGTATCGATACAT
1 TGTATCGATAC-ATACTTGCTGTATCGATACAT
3755721 TGTATCGATACATACTTGCTGTATCGATACA
1 TGTATCGATACATACTTGCTGTATCGATACA
3755752 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATACTTGCTGTATCGATACAT
Found at i:3755798 original size:21 final size:21
Alignment explanation
Indices: 3755772--3755847 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
3755762 CTGCCAAGAA
3755772 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
3755793 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
3755813 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
3755834 ATGTATCGATACAT
1 ATGTATCGATACAT
3755848 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:3755817 original size:20 final size:20
Alignment explanation
Indices: 3755792--3755865 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
3755782 ACATCTTTTT
3755792 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
3755812 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
3755833 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
3755853 CATGTATCGATAC
1 CATGTATCGATAC
3755866 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:3755829 original size:41 final size:41
Alignment explanation
Indices: 3755772--3755865 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
3755762 CTGCCAAGAA
3755772 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3755813 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3755854 ATGTATCGATAC
1 ATGTATCGATAC
3755866 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:3758336 original size:13 final size:13
Alignment explanation
Indices: 3758318--3758356 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3758308 ATAATCACCC
*
3758318 TGTATCGATACAG
1 TGTATCGATACAA
3758331 TGTATCGATACAA
1 TGTATCGATACAA
3758344 TGTATCGATACAA
1 TGTATCGATACAA
3758357 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3758367 original size:20 final size:20
Alignment explanation
Indices: 3758342--3758420 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
3758332 GTATCGATAC
3758342 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
3758362 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
3758387 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
3758407 CATGTATCGATACA
1 AATGTATCGATACA
3758421 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:3762290 original size:21 final size:21
Alignment explanation
Indices: 3762261--3762305 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3762251 AAGTTTTCAT
*
3762261 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
3762281 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
3762303 TTT
1 TTT
3762306 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:3764537 original size:13 final size:13
Alignment explanation
Indices: 3764519--3764544 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3764509 ACAATTTTTG
3764519 TGTATCGATACAT
1 TGTATCGATACAT
3764532 TGTATCGATACAT
1 TGTATCGATACAT
3764545 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3764541 original size:32 final size:32
Alignment explanation
Indices: 3764500--3764562 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
3764490 TACAAGCCAA
**
3764500 TGTATCGATACAATTTTTG-TGTATCGATACAT
1 TGTATCGATAC-ATACTTGCTGTATCGATACAT
3764532 TGTATCGATACATACTTGCTGTATCGATACA
1 TGTATCGATACATACTTGCTGTATCGATACA
3764563 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATACTTGCTGTATCGATACAT
Found at i:3764609 original size:21 final size:21
Alignment explanation
Indices: 3764583--3764658 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
3764573 CTGCCAAGAA
3764583 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
3764604 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
3764624 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
3764645 ATGTATCGATACAT
1 ATGTATCGATACAT
3764659 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:3764628 original size:20 final size:20
Alignment explanation
Indices: 3764603--3764676 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
3764593 ACATCTTTTT
3764603 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
3764623 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
3764644 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
3764664 CATGTATCGATAC
1 CATGTATCGATAC
3764677 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:3764640 original size:41 final size:41
Alignment explanation
Indices: 3764583--3764676 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
3764573 CTGCCAAGAA
3764583 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3764624 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3764665 ATGTATCGATAC
1 ATGTATCGATAC
3764677 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:3766674 original size:13 final size:13
Alignment explanation
Indices: 3766655--3766685 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3766645 ACCTTTCACT
3766655 ATGTATCGATACA
1 ATGTATCGATACA
*
3766668 TTGTATCGATACA
1 ATGTATCGATACA
3766681 ATGTA
1 ATGTA
3766686 CCTTGTATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3767323 original size:15 final size:14
Alignment explanation
Indices: 3767303--3767342 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
3767293 TTATAGGCTT
3767303 TAAACTAATTACCCC
1 TAAACTAATTA-CCC
*
3767318 TAAACTAATTACGC
1 TAAACTAATTACCC
3767332 TAAACCTAATT
1 TAAA-CTAATT
3767343 CCACATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (14 bp):
TAAACTAATTACCC
Found at i:3770471 original size:22 final size:23
Alignment explanation
Indices: 3770438--3770481 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
3770428 TTCAATTGTT
*
3770438 TATAATTAGCAATTAATAGATAA
1 TATAATTAGCAAATAATAGATAA
*
3770461 TATAA-TAGCAAATAATTGATA
1 TATAATTAGCAAATAATAGATA
3770482 GTAAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (23 bp):
TATAATTAGCAAATAATAGATAA
Found at i:3777714 original size:16 final size:16
Alignment explanation
Indices: 3777693--3777728 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
3777683 TTTCAATGGA
*
3777693 TATTCATATTAAGTTG
1 TATTCATAATAAGTTG
*
3777709 TATTCATAATAATTTG
1 TATTCATAATAAGTTG
3777725 TATT
1 TATT
3777729 ATGTGATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (16 bp):
TATTCATAATAAGTTG
Done.