genome.fa.s903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold903
Parameters: 2 7 7 80 10 50 1000
Length:  100214

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79--104	13	2.0	13	100	0	52	30	15	15	38	1.88
59--125	33	2.0	33	88	0	98	25	14	16	43	1.86
2548--2720	52	3.3	53	79	9	185	30	25	12	31	1.93
2704--2780	28	2.8	28	87	0	100	23	33	19	23	1.97
2734--2935	78	2.6	79	83	2	237	24	29	16	29	1.97
8633--8749	51	2.3	51	84	0	162	40	12	15	31	1.85
16856--16952	51	1.9	50	83	6	124	29	22	10	37	1.87
16968--17083	50	2.3	51	84	3	162	31	26	10	31	1.90
16884--17278	129	3.1	127	79	8	371	29	25	12	32	1.93
17098--17196	51	1.9	51	81	0	117	29	27	11	32	1.91
18316--18340	13	1.9	13	100	0	50	36	16	16	32	1.90
18296--18361	32	2.0	33	88	2	98	34	12	13	39	1.82
18405--18429	13	1.9	13	100	0	50	32	16	16	36	1.90
18438--18565	52	2.5	52	93	3	215	33	17	17	31	1.93
23190--23265	27	2.9	27	80	2	82	51	21	3	23	1.64
24290--24374	32	2.7	32	83	3	100	25	9	15	49	1.74
24331--24407	32	2.4	32	80	8	77	23	9	16	50	1.74
24931--24982	17	3.1	16	75	8	50	51	1	1	44	1.23
27129--27186	23	2.4	25	83	11	68	51	6	8	32	1.59
38078--38118	22	1.9	22	85	5	57	29	7	0	63	1.21
38437--38477	21	2.0	20	85	9	55	53	0	12	34	1.38
42172--42218	9	5.4	9	80	10	53	19	0	2	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42522--42588	32	2.0	34	94	5	120	26	8	22	41	1.83
43716--43744	13	2.2	13	100	0	58	41	17	13	27	1.87
49671--49710	10	3.9	10	87	6	53	60	0	0	40	0.97
49671--49705	18	1.9	18	94	0	61	60	0	0	40	0.97
49949--50004	18	3.2	19	78	12	66	41	0	1	57	1.09
52693--52725	12	2.6	13	85	9	50	30	3	0	66	1.06
52923--52979	25	2.4	24	88	8	89	24	7	7	61	1.47
52931--52982	25	2.1	25	100	0	104	26	7	7	57	1.54
55634--55660	2	13.5	2	100	0	54	51	0	0	48	1.00
59459--59500	18	2.3	19	83	4	50	61	9	23	4	1.45
61489--61562	20	3.6	19	72	22	69	35	0	0	64	0.94
61489--61553	6	11.8	6	75	18	61	36	0	0	63	0.95
63516--63857	79	4.3	79	84	3	395	34	13	25	26	1.93
63516--63857	158	2.2	158	85	2	463	34	13	25	26	1.93
63725--63988	132	2.0	131	86	2	368	35	15	25	24	1.94
63857--64007	79	1.9	79	84	2	205	37	13	22	26	1.91
66407--66464	20	2.8	21	78	7	73	48	8	10	32	1.68
66533--66570	13	3.1	13	85	11	53	31	13	13	42	1.82
69294--69329	17	2.2	17	90	5	56	25	2	13	58	1.49
72729--72806	32	2.4	32	95	0	138	35	17	8	37	1.82
72742--72804	19	3.6	19	70	24	66	38	19	7	34	1.81
73852--73912	24	2.5	24	76	5	61	72	0	21	6	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81754--82683	27	34.0	27	91	2	1484	23	34	14	28	1.93
81754--82683	55	17.0	54	92	2	1484	23	34	14	28	1.93
81754--82683	246	3.8	245	92	2	1535	23	34	14	28	1.93
82666--83646	32	30.8	32	93	3	1624	31	34	18	15	1.93
82666--83646	95	10.3	96	93	3	1624	31	34	18	15	1.93
82666--83646	127	7.7	128	92	3	1624	31	34	18	15	1.93
83667--83797	45	2.8	47	80	7	133	21	26	21	30	1.98
88011--88048	18	2.2	18	86	13	53	39	0	2	57	1.12
88412--88453	21	2.0	21	85	0	57	50	4	2	42	1.36
91689--91772	19	4.3	20	66	22	54	30	0	2	66	1.04
91737--91823	43	2.1	43	80	8	99	35	0	1	63	1.02
91688--91818	11	11.8	11	69	19	69	31	0	2	66	1.04
92817--92885	26	2.7	26	93	6	115	60	2	0	36	1.11
92900--92953	26	2.1	26	82	6	65	53	0	0	46	1.00
98885--98940	27	2.1	27	89	0	85	41	12	14	32	1.83

Tables:   1

The End!