genome.fa.s907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold907
Parameters: 2 7 7 80 10 50 1000
Length:  25292

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2947--3017	20	3.5	20	94	3	117	38	19	12	29	1.89
2947--3051	33	2.9	35	83	13	117	37	19	13	30	1.90
2947--3051	20	5.7	18	80	19	103	37	19	13	30	1.90
7016--7040	13	1.9	13	100	0	50	36	16	16	32	1.90
6993--7060	33	2.1	33	89	8	104	32	14	16	36	1.89
7115--7167	20	2.7	20	75	0	61	35	16	15	32	1.90
7153--7177	13	1.9	13	100	0	50	36	16	16	32	1.90
6995--7300	137	2.2	137	94	1	524	32	18	15	34	1.92
9723--9761	13	3.0	13	96	0	69	35	15	17	30	1.91
14315--14344	9	3.3	9	95	0	51	26	33	0	40	1.57
15961--15985	13	1.9	13	100	0	50	36	16	16	32	1.90
15939--16005	33	2.1	33	88	8	102	32	13	16	37	1.88
16098--16124	13	2.1	13	100	0	54	37	14	14	33	1.88
18242--18266	13	1.9	13	100	0	50	32	16	16	36	1.90
18247--18306	20	3.0	20	87	0	84	36	11	18	33	1.87
19857--19882	13	2.0	13	100	0	52	38	15	15	30	1.88
19871--19923	19	2.7	20	91	2	90	30	18	15	35	1.92
19910--20004	42	2.3	42	98	0	181	37	18	17	25	1.93
19992--20058	33	2.0	33	82	0	80	40	11	17	29	1.86
21223--21259	13	2.8	13	91	0	65	35	16	16	32	1.91
21249--21337	34	2.8	32	80	11	119	37	7	23	31	1.84
21305--21359	21	2.5	22	94	5	103	36	10	25	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21347--21377	10	3.1	10	90	0	53	41	6	29	22	1.78
21400--21536	53	2.6	53	85	1	184	28	16	17	37	1.92
21524--21578	21	2.7	20	80	5	65	30	14	16	38	1.89
23965--24133	51	3.3	50	79	7	180	30	11	28	30	1.91
24020--24134	50	2.3	51	86	1	160	31	10	26	31	1.90
24119--24192	28	2.6	28	85	6	96	27	21	31	20	1.98
24263--24423	51	3.2	51	76	7	157	32	13	22	31	1.92

Tables:   1

The End!