Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold91
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1327174
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 48727 characters in sequence are not A, C, G, or T
File 1 of 8
Found at i:5313 original size:1 final size:1
Alignment explanation
Indices: 5307--5395 Score: 79
Period size: 1 Copynumber: 89.0 Consensus size: 1
5297 GGCGTCCTCC
** ** ** *
5307 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAAAAAATGAAAAACCAAAAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * *
5372 GGAAAAAAAAACAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAA
5396 GGGGGTCCGG
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 74 1.00
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.01
Consensus pattern (1 bp):
A
Found at i:5393 original size:35 final size:33
Alignment explanation
Indices: 5307--5395 Score: 117
Period size: 35 Copynumber: 2.6 Consensus size: 33
5297 GGCGTCCTCC
5307 AAAAAAAAAAAAAA-AAAAAAAAAAAAAAAACG
1 AAAAAAAAAAAAAACAAAAAAAAAAAAAAAACG
* * *
5339 AAAAAAATGAAAAACCAAAAAAAAAAAAAAAAGGG
1 AAAAAAA-AAAAAAACAAAAAAAAAAAAAAAA-CG
5374 AAAAAAAAACAAAAACAAAAAA
1 AAAAAAAAA-AAAAACAAAAAA
5396 GGGGGTCCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
32 7 0.15
33 5 0.10
34 17 0.35
35 19 0.40
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.01
Consensus pattern (33 bp):
AAAAAAAAAAAAAACAAAAAAAAAAAAAAAACG
Found at i:6875 original size:29 final size:29
Alignment explanation
Indices: 6836--6961 Score: 139
Period size: 30 Copynumber: 4.3 Consensus size: 29
6826 TCACCCTTCA
*
6836 AAAGTCCACAAGTCAGTGGCATTTTTTTC
1 AAAGCCCACAAGTCAGTGGCATTTTTTTC
*
6865 AAAGCCCACAAGTCGGTGGCATTTTTTTC
1 AAAGCCCACAAGTCAGTGGCATTTTTTTC
***
6894 GAAAGCCCACAAGTCAGTGGCA--ACCTTC
1 -AAAGCCCACAAGTCAGTGGCATTTTTTTC
* ** *
6922 AAAGCCCACAAATCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCA-TTTTTTTC
6952 AAAGCCCACA
1 AAAGCCCACA
6962 CAAGTCGGTG
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
27 20 0.24
28 3 0.04
29 27 0.33
30 32 0.39
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCATTTTTTTC
Found at i:6891 original size:30 final size:30
Alignment explanation
Indices: 6836--6915 Score: 135
Period size: 29 Copynumber: 2.7 Consensus size: 30
6826 TCACCCTTCA
*
6836 AAAGTCCACAAGTCAGTGGCATTTTTTTC-
1 AAAGCCCACAAGTCAGTGGCATTTTTTTCG
*
6865 AAAGCCCACAAGTCGGTGGCATTTTTTTCG
1 AAAGCCCACAAGTCAGTGGCATTTTTTTCG
6895 AAAGCCCACAAGTCAGTGGCA
1 AAAGCCCACAAGTCAGTGGCA
6916 ACCTTCAAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 27 0.57
30 20 0.43
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCATTTTTTTCG
Found at i:6937 original size:27 final size:27
Alignment explanation
Indices: 6895--6989 Score: 100
Period size: 27 Copynumber: 3.3 Consensus size: 27
6885 ATTTTTTTCG
*
6895 AAAGCCCACAAGTCAGTGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCAACCTTC
*
6922 AAAGCCCACAAATCAGTGGCACCCTTTTCC
1 AAAGCCCACAAATCAGTGGCAACC--TT-C
*
6952 AAAGCCCACACAAGTCGGTGGCAACCCTTC
1 AAAGCCCACA-AA-TCAGTGGCAA-CCTTC
*
6982 TAAGCCCA
1 AAAGCCCA
6990 ATATAGCTGG
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
27 22 0.39
29 2 0.04
30 19 0.33
31 4 0.07
32 8 0.14
33 2 0.04
ACGTcount: A:0.32, C:0.36, G:0.17, T:0.16
Consensus pattern (27 bp):
AAAGCCCACAAATCAGTGGCAACCTTC
Found at i:6941 original size:57 final size:60
Alignment explanation
Indices: 6862--6989 Score: 163
Period size: 57 Copynumber: 2.2 Consensus size: 60
6852 TGGCATTTTT
* * *** *
6862 TTCAAAGCCCACAAGTCGGTGGCATTTTTTTCGAAAG-CC-CACAAGTCAGTGGCAA-CC
1 TTCAAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACACAAGTCAGTGGCAACCC
*
6919 TTCAAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACACAAGTCGGTGGCAACCC
1 TTCAAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACACAAGTCAGTGGCAACCC
*
6979 TTCTAAGCCCA
1 TTCAAAGCCCA
6990 ATATAGCTGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 31 0.52
58 2 0.03
59 15 0.25
60 12 0.20
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (60 bp):
TTCAAAGCCCACAAATCAGTGGCACCCTTTTCCAAAGCCCACACAAGTCAGTGGCAACCC
Found at i:6957 original size:30 final size:30
Alignment explanation
Indices: 6836--6980 Score: 127
Period size: 30 Copynumber: 4.9 Consensus size: 30
6826 TCACCCTTCA
* ** *
6836 AAAGTCCACAAGTCAGTGGCA-TTTTTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* *** *
6865 AAAGCCCACAAGTCGGTGGCATTTTTTTCG
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
6895 AAAGCCCACAAGTCAGTGGCAACC--TT-C
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
6922 AAAGCCCACAAATCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
6952 AAAGCCCACACAAGTCGGTGGCAACCCTT
1 AAAG-CC-CACAAGTCAGTGGC-ACCCTT
6981 CTAAGCCCAA
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.23
28 2 0.02
29 21 0.22
30 31 0.32
31 2 0.02
32 12 0.12
33 6 0.06
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCACCCTTTTCC
Found at i:6987 original size:30 final size:30
Alignment explanation
Indices: 6901--6989 Score: 105
Period size: 30 Copynumber: 3.0 Consensus size: 30
6891 TTCGAAAGCC
6901 CACAAGTCAGTGGCAA-CCTTCAAAGCCCA
1 CACAAGTCAGTGGCAACCCTTCAAAGCCCA
6930 CA-AA-TCAGTGGC-ACCCTTTTCCAAAGCCCA
1 CACAAGTCAGTGGCAACCC--TT-CAAAGCCCA
* *
6960 CACAAGTCGGTGGCAACCCTTCTAAGCCCA
1 CACAAGTCAGTGGCAACCCTTCAAAGCCCA
6990 ATATAGCTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
26 1 0.02
27 10 0.20
28 2 0.04
29 4 0.08
30 19 0.37
31 4 0.08
32 7 0.14
33 4 0.08
ACGTcount: A:0.30, C:0.36, G:0.17, T:0.17
Consensus pattern (30 bp):
CACAAGTCAGTGGCAACCCTTCAAAGCCCA
Found at i:7044 original size:49 final size:47
Alignment explanation
Indices: 6982--7253 Score: 326
Period size: 49 Copynumber: 5.8 Consensus size: 47
6972 GCAACCCTTC
* *
6982 TAAGCCCAATATAGCTGGCCTTGAATCACCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TTA-CTT
7031 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-A-CTT
*
7080 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C---CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTACTT
* * *
7123 TAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCA-C---CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTACTT
7166 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT--A-CTT
* * *
7218 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTG
7254 ACATCCTTTT
Statistics
Matches: 201, Mismatches: 12, Indels: 17
0.87 0.05 0.07
Matches are distributed among these distances:
43 80 0.40
44 1 0.00
48 3 0.01
49 81 0.40
52 36 0.18
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (47 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTACTT
Found at i:7122 original size:21 final size:21
Alignment explanation
Indices: 7098--7165 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
7088 ATATAGCTGG
7098 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* *
7119 CCTTTAAGTC--CA-ATGTAGCTGA
1 CCTTGAA-TCAGCACAT-TGGC--A
7141 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
7162 CCTT
1 CCTT
7166 TAAGTCCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:7138 original size:43 final size:43
Alignment explanation
Indices: 7074--7209 Score: 245
Period size: 43 Copynumber: 3.2 Consensus size: 43
7064 TTGGCACCTT
7074 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
* *
7117 CACCTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGG
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
*
7160 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
7203 CACCTTT
1 CACCTTT
7210 TCCATCTTTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (43 bp):
CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
Found at i:7241 original size:52 final size:53
Alignment explanation
Indices: 7163--7316 Score: 177
Period size: 52 Copynumber: 2.9 Consensus size: 53
7153 ACATTGGCAC
*
7163 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAG
* * * *
7215 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCAG
* * * * *
7270 CTTTAAG-CCGAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCC-AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
7317 ATCACTTTTC
Statistics
Matches: 84, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
52 38 0.45
53 5 0.06
54 7 0.08
55 34 0.40
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAG
Found at i:7299 original size:55 final size:55
Alignment explanation
Indices: 7163--7626 Score: 336
Period size: 49 Copynumber: 8.7 Consensus size: 55
7153 ACATTGGCAC
* * *
7163 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
7215 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
7270 CTTTAAG-CCGAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCAT
1 CTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-CTTTT-TC-TCAT
* *
7334 CATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-C----T-TCAT
1 C---TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
7386 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * *
7441 CTTTAAGCCCAATATCGTTGGCCTTGAATCACCATATTGGCA-CC---TT-T-AT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * *
7490 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC---TT-T-AT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * *
7539 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CC----T-TCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
7588 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG
7627 GCACTTTTAA
Statistics
Matches: 348, Mismatches: 40, Indels: 51
0.79 0.09 0.12
Matches are distributed among these distances:
48 2 0.01
49 164 0.47
50 2 0.01
51 2 0.01
52 43 0.12
53 2 0.01
54 10 0.03
55 68 0.20
56 1 0.00
57 1 0.00
58 1 0.00
59 1 0.00
61 5 0.01
62 5 0.01
63 2 0.01
64 5 0.01
66 1 0.00
67 31 0.09
68 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (55 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:7406 original size:49 final size:49
Alignment explanation
Indices: 7333--7630 Score: 371
Period size: 49 Copynumber: 6.0 Consensus size: 49
7323 TTTCTCATCA
* * * *
7333 TCATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCT
1 TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCT
* * * *
7382 TCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTT
1 TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-CC----T
* * * * *
7436 CTCATCTTTAAGCCCAATATCGTTGGCCTTGAATCACCATATTGGCACCT
1 -TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCT
* *
7486 TTATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCT
1 TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCT
* * *
7535 TTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
1 TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCT
*
7584 TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
7631 TTTTAAGTCC
Statistics
Matches: 216, Mismatches: 27, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
49 174 0.81
50 2 0.01
54 3 0.01
55 37 0.17
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (49 bp):
TCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCT
Found at i:7508 original size:104 final size:99
Alignment explanation
Indices: 7333--7626 Score: 401
Period size: 104 Copynumber: 2.9 Consensus size: 99
7323 TTTCTCATCA
* * *
7333 TCATTTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAA
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAA
*
7398 TGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTT
66 TGTAGCTGGCCTTGAATCAGCACATTGACA-CC---TT
* * * *
7436 CTCATCTTTAAGCCCAATATCGTTGGCCTTGAATCACCATATTGGCACCTTTATCTTTAAGTCCA
1 -TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCA
* * *
7501 ATATAGCTGGCCTTGAATCAGCATATTGGCACCTT
65 ATGTAGCTGGCCTTGAATCAGCACATTGACACCTT
* * * *
7536 T-ATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAA
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAA
7600 TGTAGCTGGCCTTGAATCAGCACATTG
66 TGTAGCTGGCCTTGAATCAGCACATTG
7627 GCACTTTTAA
Statistics
Matches: 169, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
98 80 0.47
99 1 0.01
100 2 0.01
103 2 0.01
104 84 0.50
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (99 bp):
TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAA
TGTAGCTGGCCTTGAATCAGCACATTGACACCTT
Found at i:7686 original size:147 final size:147
Alignment explanation
Indices: 7338--7655 Score: 389
Period size: 153 Copynumber: 2.2 Consensus size: 147
7328 CATCATCATT
* * *
7338 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-CTTCATCTTTAAGTTCAATGTA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-TCCTTTATCTTTAAGTCCAATGTA
* * *
7402 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCTTG
65 GCTGGCCTTGAATCAGCACATTGACATCC---TTCTCATCTTTAAGCCCAATATAGCTGGCCTTG
*
7467 AATCACCATATTGGCACCTTTATC
127 AATCACCACATTGGCACC--T-TC
*
7491 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCTCCTTTATCTTTAAGTCCAATGTAG
* * * *
7556 CTGGCCTTGACTCAGCACATTGGCA-CC-T-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATC
66 CTGGCCTTGAATCAGCACATTGACATCCTTCTCATCTTTAAGCCCAATATAGCTGGCCTTGAATC
*
7618 AGCACATTGGCA-C-T-
131 ACCACATTGGCACCTTC
* *
7632 TTTAAGTCCAATGTCGCTGGCCTT
1 TTTAAGTCCAATATAGCTGGCCTT
7656 ATATCGCTAG
Statistics
Matches: 149, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
141 22 0.15
142 1 0.01
146 1 0.01
147 40 0.27
148 1 0.01
152 2 0.01
153 82 0.55
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (147 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCTCCTTTATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGACATCCTTCTCATCTTTAAGCCCAATATAGCTGGCCTTGAATC
ACCACATTGGCACCTTC
Found at i:8415 original size:13 final size:13
Alignment explanation
Indices: 8397--8421 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8387 CATAAAATGT
8397 TGTATCGATACAA
1 TGTATCGATACAA
8410 TGTATCGATACA
1 TGTATCGATACA
8422 TGTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:8502 original size:13 final size:13
Alignment explanation
Indices: 8484--8508 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8474 ATCACTTAAA
8484 TGTATCGATACAT
1 TGTATCGATACAT
8497 TGTATCGATACA
1 TGTATCGATACA
8509 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:8573 original size:52 final size:52
Alignment explanation
Indices: 8517--8697 Score: 353
Period size: 52 Copynumber: 3.5 Consensus size: 52
8507 CACTGATCTT
*
8517 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
8569 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
8621 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
8673 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
8698 TCATATTTCG
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 128 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:14859 original size:34 final size:34
Alignment explanation
Indices: 14821--14924 Score: 190
Period size: 34 Copynumber: 3.1 Consensus size: 34
14811 TCTTTGTTAA
14821 GATGTATTTGGTGAGAATGTTAGGTGTGTTAGGT
1 GATGTATTTGGTGAGAATGTTAGGTGTGTTAGGT
*
14855 GATGTATTTGGTGAGAATGTTAAGTGTGTTAGGT
1 GATGTATTTGGTGAGAATGTTAGGTGTGTTAGGT
*
14889 GATGTGTTTGGTGAGAATGTTAGGTGTGTTAGGT
1 GATGTATTTGGTGAGAATGTTAGGTGTGTTAGGT
14923 GA
1 GA
14925 GAATGTTAGG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.40
Consensus pattern (34 bp):
GATGTATTTGGTGAGAATGTTAGGTGTGTTAGGT
Found at i:14923 original size:22 final size:22
Alignment explanation
Indices: 14891--15036 Score: 142
Period size: 22 Copynumber: 6.5 Consensus size: 22
14881 TGTTAGGTGA
*
14891 TGTGTTTGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
14913 TGTGTTAGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
*
14935 TGTGTTAGGTGATGTAT-TT-GG
1 TGTGTTAGGTGA-GAATGTTAGG
14956 TGAGAATGTTAGGT--G--TGTTAGGTG
1 T--G--TGTTAGGTGAGAATGTTA-G-G
*
14980 ATGTGTTTGGTGAGAATGTTAGG
1 -TGTGTTAGGTGAGAATGTTAGG
*
15003 TGTGTTAGGTGAGAATTTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
15025 TGTGTTAGGTGA
1 TGTGTTAGGTGA
15037 TGTATTTGGT
Statistics
Matches: 105, Mismatches: 5, Indels: 28
0.76 0.04 0.20
Matches are distributed among these distances:
20 1 0.01
21 12 0.11
22 68 0.65
23 8 0.08
24 2 0.02
25 14 0.13
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (22 bp):
TGTGTTAGGTGAGAATGTTAGG
Found at i:14924 original size:56 final size:56
Alignment explanation
Indices: 14864--14980 Score: 216
Period size: 56 Copynumber: 2.1 Consensus size: 56
14854 TGATGTATTT
*
14864 GGTGAGAATGTTAAGTGTGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTA
1 GGTGAGAATGTTAAGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
*
14920 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
1 GGTGAGAATGTTAAGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
14976 GGTGA
1 GGTGA
14981 TGTGTTTGGT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (56 bp):
GGTGAGAATGTTAAGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
Found at i:14962 original size:34 final size:34
Alignment explanation
Indices: 14920--15014 Score: 181
Period size: 34 Copynumber: 2.8 Consensus size: 34
14910 AGGTGTGTTA
14920 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
*
14954 GGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTT
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
14988 GGTGAGAATGTTAGGTGTGTTAGGTGA
1 GGTGAGAATGTTAGGTGTGTTAGGTGA
15015 GAATTTTAGG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 60 1.00
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (34 bp):
GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTT
Found at i:14983 original size:90 final size:90
Alignment explanation
Indices: 14830--15065 Score: 454
Period size: 90 Copynumber: 2.6 Consensus size: 90
14820 AGATGTATTT
*
14830 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAAGTGTGTTAGGTGATGTG
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
14895 TTTGGTGAGAATGTTAGGTGTGTTA
66 TTTGGTGAGAATGTTAGGTGTGTTA
14920 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
14985 TTTGGTGAGAATGTTAGGTGTGTTA
66 TTTGGTGAGAATGTTAGGTGTGTTA
*
15010 GGTGAGAATTTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
15066 ACATGTATAT
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 144 1.00
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.40
Consensus pattern (90 bp):
GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTG
TTTGGTGAGAATGTTAGGTGTGTTA
Found at i:15014 original size:56 final size:56
Alignment explanation
Indices: 14891--15065 Score: 225
Period size: 56 Copynumber: 3.1 Consensus size: 56
14881 TGTTAGGTGA
* *
14891 TGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGA-GAATGTTAGGT--G--TGTTAGG
1 TGTGTTAGGTGAGAATGTTAGGTGTGTTAGGTGATG--TGTTTGGTGAGAATGTTAGG
*
14944 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTTGGTGAGAATGTTAGG
1 TG-TG--TTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTTGGTGAGAATGTTAGG
* *
15003 TGTGTTAGGTGAGAATTTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTTGGTGAGAATGTTAGG
15059 TGTGTTA
1 TGTGTTA
15066 ACATGTATAT
Statistics
Matches: 110, Mismatches: 4, Indels: 13
0.87 0.03 0.10
Matches are distributed among these distances:
53 2 0.02
54 2 0.02
55 7 0.06
56 86 0.78
57 2 0.02
58 2 0.02
59 9 0.08
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (56 bp):
TGTGTTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTTGGTGAGAATGTTAGG
Found at i:19454 original size:11 final size:11
Alignment explanation
Indices: 19439--19488 Score: 50
Period size: 10 Copynumber: 4.5 Consensus size: 11
19429 AAAAAATTTG
19439 AAAAAAA-AAA
1 AAAAAAAGAAA
*
19449 AGAAAAAG-AA
1 AAAAAAAGAAA
*
19459 AAATAAAGAAA
1 AAAAAAAGAAA
19470 AAATAAAAGAAA
1 AAA-AAAAGAAA
19482 AATAAAA
1 AA-AAAA
19489 CTTTTTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
10 14 0.44
11 5 0.16
12 12 0.38
13 1 0.03
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.06
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:19460 original size:16 final size:16
Alignment explanation
Indices: 19441--19471 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19431 AAAATTTGAA
19441 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
*
19457 AAAAATAAAGAAAAA
1 AAAAAAAAAGAAAAA
19472 ATAAAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:19477 original size:16 final size:14
Alignment explanation
Indices: 19439--19477 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
19429 AAAAAATTTG
19439 AAAAAAAAAAAGAA
1 AAAAAAAAAAAGAA
19453 AAAGAAAAATAAAGAA
1 AAA-AAAAA-AAAGAA
*
19469 AAAATAAAA
1 AAAAAAAAA
19478 GAAAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 4 0.18
15 9 0.41
16 9 0.41
ACGTcount: A:0.87, C:0.00, G:0.08, T:0.05
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:21199 original size:151 final size:150
Alignment explanation
Indices: 20941--21226 Score: 491
Period size: 151 Copynumber: 1.9 Consensus size: 150
20931 TTTTATCATT
*
20941 GCCCAATTTGGCATTAGGTGTGGCATTCTATTTAAACACCTTCATGTAAAAATAATTTCATAAGG
1 GCCCAATTTGGCATTAGGTGTGGCATTCTATTTAAACACCTTCATGTAAAAATAAGTTCATAAGG
*
21006 TCACCTTAGTAATTTTCACATTAAAACCAAGTACTCAGGATAATATTAACACTTTCATGTCAAGA
66 TCACCTTAGTAATTTTCACATTAAAACCAAGTACTCAAGATAATATTAACACTTTCATGTCAAGA
21071 TATGTTCATCGCCCAATTTG
131 TATGTTCATCGCCCAATTTG
* * *
21091 GCCCTAATTTGGCATTAGGTGTGGCGTTCTATTTAGACACTTTCATGTAAAAATAAGTTCATAAG
1 GCCC-AATTTGGCATTAGGTGTGGCATTCTATTTAAACACCTTCATGTAAAAATAAGTTCATAAG
* * *
21156 GTCACCTTAGTAATTTTCACATTAAAATCAAGTACTTAAGATAATATTAACACTTTTATGTCAAG
65 GTCACCTTAGTAATTTTCACATTAAAACCAAGTACTCAAGATAATATTAACACTTTCATGTCAAG
21221 ATATGT
130 ATATGT
21227 CTATAAGTTC
Statistics
Matches: 127, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
150 4 0.03
151 123 0.97
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (150 bp):
GCCCAATTTGGCATTAGGTGTGGCATTCTATTTAAACACCTTCATGTAAAAATAAGTTCATAAGG
TCACCTTAGTAATTTTCACATTAAAACCAAGTACTCAAGATAATATTAACACTTTCATGTCAAGA
TATGTTCATCGCCCAATTTG
Found at i:21259 original size:78 final size:77
Alignment explanation
Indices: 21127--21361 Score: 231
Period size: 78 Copynumber: 3.0 Consensus size: 77
21117 TTCTATTTAG
* * * * * * *
21127 ACACTTTCATGTAAAAATAAGTTCATAAGGTCACCT-TAGTAATTTTCACATTAAAATCAAGTAC
1 ACACTTTTATGTCAAGATATGTCCATAAGCTCA-CTATAGTAATTTTCATATTAAAATCAAGT-C
21191 TTAAGATAATATTA
64 TTAAGATAATATTA
* * * * *
21205 ACACTTTTATGTCAAGATATGTCTATAAGTTCACTCTAGTAATTTTCATGTTAAAACTC-AGTTT
1 ACACTTTTATGTCAAGATATGTCCATAAGCTCACTATAGTAATTTTCATATTAAAA-TCAAGTCT
*
21269 TCATGATAATATTA
65 T-AAGATAATATTA
* * * *
21283 GCACTTTTATGTTAAGATATTTCCATAAGCTCACTATAATAATTTTTCATATTAAAATCAAGTCC
1 ACACTTTTATGTCAAGATATGTCCATAAGCTCACTATAGTAA-TTTTCATATTAAAATCAAGT-C
* *
21348 TTAGGATCATATTA
64 TTAAGATAATATTA
21362 GCGTTTTCAT
Statistics
Matches: 129, Mismatches: 22, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
77 4 0.03
78 95 0.74
79 28 0.22
80 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.39
Consensus pattern (77 bp):
ACACTTTTATGTCAAGATATGTCCATAAGCTCACTATAGTAATTTTCATATTAAAATCAAGTCTT
AAGATAATATTA
Found at i:24682 original size:82 final size:82
Alignment explanation
Indices: 24545--24700 Score: 258
Period size: 82 Copynumber: 1.9 Consensus size: 82
24535 ATTTATTCTT
* * *
24545 AACTTAAAAATGCCCCTTTCAAACATTAAATCCAAGAAATACTTAACATAAAAGTTCTATGTTCT
1 AACTTAAAAATACACCTTTCAAACATTAAATCCAAGAAATACTTAACATAAAAGTTCTACGTTCT
24610 ACTAAATTTCGAGGAGA
66 ACTAAATTTCGAGGAGA
* * *
24627 AACTTAAAAATACACCTTTCAAACATTAAATCTAAGAACTATTTAACATAAAAGTTCTACGTTCT
1 AACTTAAAAATACACCTTTCAAACATTAAATCCAAGAAATACTTAACATAAAAGTTCTACGTTCT
24692 ACTAAATTT
66 ACTAAATTT
24701 TAGGGAGCTT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 68 1.00
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (82 bp):
AACTTAAAAATACACCTTTCAAACATTAAATCCAAGAAATACTTAACATAAAAGTTCTACGTTCT
ACTAAATTTCGAGGAGA
Found at i:26307 original size:3 final size:3
Alignment explanation
Indices: 26299--26337 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
26289 ATATGCAACA
*
26299 AAT AAT AAT AAT AAT TAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26338 GATGATGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:29645 original size:23 final size:23
Alignment explanation
Indices: 29618--29667 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
29608 TCACTAAATT
*
29618 TTTAAATAATAATA-ATTAATTAA
1 TTTAAATAA-AATATATTAATAAA
*
29641 TTTAAATAAAATATTTTAATAAA
1 TTTAAATAAAATATATTAATAAA
29664 TTTA
1 TTTA
29668 TTTCAAAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
TTTAAATAAAATATATTAATAAA
Found at i:29944 original size:30 final size:30
Alignment explanation
Indices: 29908--29993 Score: 106
Period size: 29 Copynumber: 2.9 Consensus size: 30
29898 GAATAATAAT
*
29908 TTAAAGAAATAATTATATTTTTTATAAATC
1 TTAAAGAAATAAATATATTTTTTATAAATC
* * *
29938 TTAAAG-AATAAATAAATATTTT-TAAATT
1 TTAAAGAAATAAATATATTTTTTATAAATC
29966 TTAAA-ATAATAAATATATTTTTTATAAA
1 TTAAAGA-AATAAATATATTTTTTATAAA
29994 AATTGAGAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 10 0.21
29 27 0.57
30 10 0.21
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (30 bp):
TTAAAGAAATAAATATATTTTTTATAAATC
Found at i:31443 original size:15 final size:16
Alignment explanation
Indices: 31423--31461 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
31413 TATTATGTTA
31423 ATATAA-TTTAATATT
1 ATATAACTTTAATATT
31438 ATATAACTTTTAATATT
1 ATATAAC-TTTAATATT
*
31455 ATTTAAC
1 ATATAAC
31462 ATTTCATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.29
17 15 0.71
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATAACTTTAATATT
Found at i:31451 original size:17 final size:17
Alignment explanation
Indices: 31429--31461 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
31419 GTTAATATAA
31429 TTTAATATTATATAACT
1 TTTAATATTATATAACT
*
31446 TTTAATATTATTTAAC
1 TTTAATATTATATAAC
31462 ATTTCATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAATATTATATAACT
Found at i:32677 original size:2 final size:2
Alignment explanation
Indices: 32665--32694 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
32655 ATATTTCATT
32665 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32695 TTCCTACCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:33933 original size:22 final size:25
Alignment explanation
Indices: 33887--33939 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
33877 TGAATGAAAA
*
33887 ATTTTATTATCTTTAAATATCTAAAT
1 ATTTTATTATCTTTAAACA-CTAAAT
33913 -TTTTATTAT-TTTAAACA-TAAAT
1 ATTTTATTATCTTTAAACACTAAAT
33935 ATTTT
1 ATTTT
33940 TATCGTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.20
23 4 0.16
24 7 0.28
25 9 0.36
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.57
Consensus pattern (25 bp):
ATTTTATTATCTTTAAACACTAAAT
Found at i:33938 original size:24 final size:25
Alignment explanation
Indices: 33883--33942 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
33873 TTTTTGAATG
* *
33883 AAAAATTTTATTATCTTTAAATATC
1 AAAATTTTTATTATCTTTAAACATC
*
33908 TAAATTTTTATTAT-TTTAAACAT-
1 AAAATTTTTATTATCTTTAAACATC
33931 AAATATTTTTAT
1 AAA-ATTTTTAT
33943 CGTTTTAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 2 0.07
24 16 0.53
25 12 0.40
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (25 bp):
AAAATTTTTATTATCTTTAAACATC
Found at i:38962 original size:2 final size:2
Alignment explanation
Indices: 38949--38979 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
38939 TAATATTATG
*
38949 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38980 TTTATATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:40277 original size:23 final size:23
Alignment explanation
Indices: 40241--40296 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
40231 CAAATTATAA
*
40241 AAATATACAAATTT-TTAAATTTT
1 AAATATA-AAATTTATTAAATTTG
**
40264 AAATATAAAGATTTATTGGATTTG
1 AAATATAAA-ATTTATTAAATTTG
40288 AAATATAAA
1 AAATATAAA
40297 TAAATACATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.07
23 11 0.39
24 15 0.54
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (23 bp):
AAATATAAAATTTATTAAATTTG
Found at i:40364 original size:2 final size:2
Alignment explanation
Indices: 40357--40386 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
40347 TTTGTAGTTT
*
40357 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
40387 AGGTTCGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:40652 original size:37 final size:37
Alignment explanation
Indices: 40584--40694 Score: 99
Period size: 37 Copynumber: 3.1 Consensus size: 37
40574 AATTAGTTGA
* * *
40584 TTTTAAAATTATTTTTAATATT-AT--TAAATTAATT
1 TTTTAAAATTATTTCTAATTTTAATAATATATTAATT
*
40618 TTTTATTAAATTA-TTCTAA-TTTAGATAA-ATATTAAATA
1 TTTTA--AAATTATTTCTAATTTTA-ATAATATATT-AATT
*
40656 TTTTAAATTTATTTCTAATTTTAATAATATATTAATT
1 TTTTAAAATTATTTCTAATTTTAATAATATATTAATT
40693 TT
1 TT
40695 GAAATAAATT
Statistics
Matches: 61, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
34 7 0.11
35 5 0.08
36 13 0.21
37 19 0.31
38 17 0.28
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.57
Consensus pattern (37 bp):
TTTTAAAATTATTTCTAATTTTAATAATATATTAATT
Found at i:40705 original size:16 final size:17
Alignment explanation
Indices: 40671--40708 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
40661 AATTTATTTC
*
40671 TAATTTTAATAATATAT
1 TAATTTTAATAATAAAT
*
40688 TAATTTTGA-AATAAAT
1 TAATTTTAATAATAAAT
40704 TAATT
1 TAATT
40709 AATTCAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TAATTTTAATAATAAAT
Found at i:50239 original size:20 final size:20
Alignment explanation
Indices: 50211--50253 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
50201 TCCTGTTCAG
50211 CATGATAGAACTAAGCATAT
1 CATGATAGAACTAAGCATAT
*
50231 CATGGTAGAACTAAGCATAT
1 CATGATAGAACTAAGCATAT
50251 CAT
1 CAT
50254 TGTGAAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (20 bp):
CATGATAGAACTAAGCATAT
Found at i:51607 original size:55 final size:55
Alignment explanation
Indices: 51523--51628 Score: 169
Period size: 55 Copynumber: 1.9 Consensus size: 55
51513 CTTTTCCATA
*
51523 TTATCTACTAACCTTATACCTTATTATATTATA-TATAGCATACATATATAAAAAC
1 TTATCTACTAACCTTATACCTTAATATATTATATTATA-CATACATATATAAAAAC
* *
51578 TTATCTACTAACCTTATACCTTAATATATTATATTATATATATATATATAA
1 TTATCTACTAACCTTATACCTTAATATATTATATTATACATACATATATAA
51629 TTTGTGAAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 43 0.91
56 4 0.09
ACGTcount: A:0.42, C:0.14, G:0.01, T:0.43
Consensus pattern (55 bp):
TTATCTACTAACCTTATACCTTAATATATTATATTATACATACATATATAAAAAC
Found at i:58437 original size:17 final size:17
Alignment explanation
Indices: 58417--58449 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
58407 AATAAAACTT
58417 AAAAAGCAAAAA-AAAAA
1 AAAAAG-AAAAAGAAAAA
58434 AAAAAGAAAAAGAAAA
1 AAAAAGAAAAAGAAAA
58450 GAGCACATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAA
Found at i:58683 original size:46 final size:46
Alignment explanation
Indices: 58626--58762 Score: 247
Period size: 46 Copynumber: 3.0 Consensus size: 46
58616 ATTTGAAATG
*
58626 GTTCAGTTTGAATTTCACCTTAATAACCTGAACAAAAAATACCCTA
1 GTTCAGCTTGAATTTCACCTTAATAACCTGAACAAAAAATACCCTA
58672 GTTCAGCTTGAATTTCACCTTAATAACCTGAACAAAAAATACCCTA
1 GTTCAGCTTGAATTTCACCTTAATAACCTGAACAAAAAATACCCTA
* *
58718 GTTCAGCTTGAATTTCACTTTAATGACCTGAACAAAAAATACCCT
1 GTTCAGCTTGAATTTCACCTTAATAACCTGAACAAAAAATACCCT
58763 GAAATTAAAT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (46 bp):
GTTCAGCTTGAATTTCACCTTAATAACCTGAACAAAAAATACCCTA
Found at i:69332 original size:151 final size:151
Alignment explanation
Indices: 69058--69359 Score: 424
Period size: 151 Copynumber: 2.0 Consensus size: 151
69048 CCCAACCAGA
* * **
69058 ATGCATTTTACTAATTCTAAGGGTTCTAGACAGCTTAGGATTAAAAAATCATAACTCTCTCATTT
1 ATGCATTTTACTAATTCTAAGGGTTCTAGACAGCTTAAGATTAAAAAATCATAACTCCCTCATCC
* * * * *
69123 GGAATGATCCAAGGATGAATAAGACATCTTTAGAAAAATATTTTGACATACTTTCAAGGAAAAAT
66 GGAATGATCCAAGGATAAATAAAACACCCTTAGAAAAATATTTTGACACACTTTCAAGGAAAAAT
*
69188 GTTATAATATTCACAAAAAAT
131 GTTATAAAATTCACAAAAAAT
* * * * * * * *
69209 ATGCATTTTACTGATTCTAGGGGTTCTGGACAGTTTAAGTTTGAAAAATCGTAACTCCCTTATCC
1 ATGCATTTTACTAATTCTAAGGGTTCTAGACAGCTTAAGATTAAAAAATCATAACTCCCTCATCC
* *
69274 GGAATGATCCAAGGATAAATAAAATACCCTTAGAAAGATATTTTGACACACTTTCAAGGAAAAAT
66 GGAATGATCCAAGGATAAATAAAACACCCTTAGAAAAATATTTTGACACACTTTCAAGGAAAAAT
69339 GTTATAAAATTCACAAAAAAT
131 GTTATAAAATTCACAAAAAAT
69360 CGTTTGATAT
Statistics
Matches: 131, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
151 131 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (151 bp):
ATGCATTTTACTAATTCTAAGGGTTCTAGACAGCTTAAGATTAAAAAATCATAACTCCCTCATCC
GGAATGATCCAAGGATAAATAAAACACCCTTAGAAAAATATTTTGACACACTTTCAAGGAAAAAT
GTTATAAAATTCACAAAAAAT
Found at i:70997 original size:20 final size:20
Alignment explanation
Indices: 70972--71025 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
70962 CATTTTAGAC
*
70972 ATGTATTAATACATTCACTT
1 ATGTATCAATACATTCACTT
* *
70992 ATGTATCGATATATTCACTT
1 ATGTATCAATACATTCACTT
*
71012 ATTATATCAATACA
1 A-TGTATCAATACA
71026 AATTATTGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.43
Consensus pattern (20 bp):
ATGTATCAATACATTCACTT
Found at i:73633 original size:96 final size:94
Alignment explanation
Indices: 73427--73638 Score: 257
Period size: 96 Copynumber: 2.2 Consensus size: 94
73417 TATTAAATAT
* *
73427 ACTCCAACTCTATTCTTCTGAGGGAACACTCCAACCCCATTTTAAATTTCTTAAGATTTAAATCT
1 ACTCCAAC-CTATTCTTCCGAGGGAACACTCCAACCCCATTTTAAATTTCTCAAGATTTAAATCT
* **
73492 TATTTTTGCTCAAATTATTGTCACTGGGGT
65 TATTTTTGCTCAAATTATCGTCACTGGGAC
** * * *
73522 ACTGTAATCCCATTCTTCCGAGGGGACACTCTAA-CCCATCTTTTAAATTTCTCAAGATTTAAAT
1 ACTCCAA-CCTATTCTTCCGAGGGAACACTCCAACCCCA--TTTTAAATTTCTCAAGATTTAAAT
*
73586 CTTATTTTTGCTCAAATTATCGTC-GTCGAGGAC
63 CTTATTTTTGCTCAAATTATCGTCACT-G-GGAC
73619 ACTCCAACCTATTCTTCCGA
1 ACTCCAACCTATTCTTCCGA
73639 AAGGATACTC
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
94 4 0.04
95 27 0.28
96 60 0.61
97 7 0.07
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (94 bp):
ACTCCAACCTATTCTTCCGAGGGAACACTCCAACCCCATTTTAAATTTCTCAAGATTTAAATCTT
ATTTTTGCTCAAATTATCGTCACTGGGAC
Found at i:77005 original size:14 final size:14
Alignment explanation
Indices: 76997--77026 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
76987 GTAAAAAAAT
76997 AAAAATAAAAGTAA
1 AAAAATAAAAGTAA
77011 AAAAATAAAAGTAA
1 AAAAATAAAAGTAA
77025 AA
1 AA
77027 GAAAAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (14 bp):
AAAAATAAAAGTAA
Found at i:77008 original size:20 final size:20
Alignment explanation
Indices: 76978--77032 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
76968 TAATAAGTAG
76978 AAATCAAAAGTAAAAAAATAA
1 AAAT-AAAAGTAAAAAAATAA
76999 AAATAAAAGTAAAAAAATAA
1 AAATAAAAGTAAAAAAATAA
*
77019 AAGTAAAAG-AAAAA
1 AAATAAAAGTAAAAA
77033 TCATCATGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 5 0.15
20 24 0.73
21 4 0.12
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (20 bp):
AAATAAAAGTAAAAAAATAA
Found at i:77682 original size:16 final size:16
Alignment explanation
Indices: 77663--77696 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
77653 CCAGCAGTGA
77663 CAGCAGCATCCATCAG
1 CAGCAGCATCCATCAG
* *
77679 CAGCAGCTTCCATGAG
1 CAGCAGCATCCATCAG
77695 CA
1 CA
77697 ACCGGCTGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (16 bp):
CAGCAGCATCCATCAG
Found at i:77747 original size:47 final size:47
Alignment explanation
Indices: 77676--77800 Score: 180
Period size: 47 Copynumber: 2.7 Consensus size: 47
77666 CAGCATCCAT
*
77676 CAGCAGCAGCTTCCATGAGCAACCGGCT-GCAACTCAAGCTTCCACGA
1 CAGCAGCAGCTTCCACGAGCAACCGG-TAGCAACTCAAGCTTCCACGA
* * *
77723 CAGCAGCAGCTTCCACGAGTAACCGGTAGCAACTCAAGCTTCCATGG
1 CAGCAGCAGCTTCCACGAGCAACCGGTAGCAACTCAAGCTTCCACGA
* *
77770 TAGCAGTAGCTTCCACGAGCAACCGGTAGCA
1 CAGCAGCAGCTTCCACGAGCAACCGGTAGCA
77801 GCTCCACGAG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 69 0.99
ACGTcount: A:0.28, C:0.33, G:0.23, T:0.16
Consensus pattern (47 bp):
CAGCAGCAGCTTCCACGAGCAACCGGTAGCAACTCAAGCTTCCACGA
Found at i:79396 original size:13 final size:13
Alignment explanation
Indices: 79378--79403 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79368 CAATTTTTTG
79378 TGTATCGATACAT
1 TGTATCGATACAT
79391 TGTATCGATACAT
1 TGTATCGATACAT
79404 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:81809 original size:21 final size:21
Alignment explanation
Indices: 81785--81831 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
81775 TTTGATGCTG
81785 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
81805 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
81826 ATTTTG
1 ATTTTG
81832 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:81970 original size:13 final size:13
Alignment explanation
Indices: 81952--81990 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
81942 ATAATCACCC
*
81952 TGTATCGATACAG
1 TGTATCGATACAA
81965 TGTATCGATACAA
1 TGTATCGATACAA
81978 TGTATCGATACAA
1 TGTATCGATACAA
81991 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:82001 original size:20 final size:20
Alignment explanation
Indices: 81976--82054 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
81966 GTATCGATAC
81976 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
81996 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
82021 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
82041 CATGTATCGATACA
1 AATGTATCGATACA
82055 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:84089 original size:15 final size:15
Alignment explanation
Indices: 84069--84099 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
84059 ATTTCGTTTG
*
84069 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
84084 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
84099 G
1 G
84100 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:85932 original size:21 final size:21
Alignment explanation
Indices: 85903--85947 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
85893 AAGTTTTCAT
*
85903 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
85923 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
85945 TTT
1 TTT
85948 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:98445 original size:52 final size:52
Alignment explanation
Indices: 98313--98436 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 52
98303 CCCGAAATAT
*
98313 GAAAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGG
*
98365 GAAAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGG
* *
98417 GCAAATTTGCCTACATGTAT
1 GAAAATTTGCCTGCATGTAT
98437 TTTGACATTA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (52 bp):
GAAAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGG
Found at i:99151 original size:58 final size:56
Alignment explanation
Indices: 99096--99241 Score: 175
Period size: 52 Copynumber: 2.8 Consensus size: 56
99086 GTTAAAGATG
*
99096 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
* *
99152 CA----CCAATATGCTGACTT-AAGGCCAGCGATATTGGACTTAAAGATGAC----A
1 AAGGTGCCAATATGCTGA-TTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
* *
99200 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
99242 GAAGGTGCCA
Statistics
Matches: 80, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
48 2 0.03
51 2 0.03
52 73 0.91
53 2 0.03
56 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (56 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
Found at i:99164 original size:52 final size:50
Alignment explanation
Indices: 99087--99629 Score: 604
Period size: 48 Copynumber: 11.1 Consensus size: 50
99077 CTTAGGAATG
* *
99087 TTAAAGATG-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGAC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
***
99136 TTAAAGATGACAAAGACACCAATATGCTGACTT-AAGGCCAGCGATATTGGAC
1 TTAAAGATG--AAAGGTGCCAATATGCTGA-TTCAAGGCCAGCGATATTGGAC
*
99188 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG--AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
99240 -T-----TG-AAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGGC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
99283 TTAAAGAAG-AAGGTGCCAATATGCTGATTCAAGGCCGGCGACT-TTGGTC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGAC
* *
99332 TTAAAGA--CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * *
99380 TTAAAGGTG--AGGTACCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
99428 TTAAAGATG-AAGGTGCCAATATGCTGATTCAAGGTCAGCGATATTAGAC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
99477 TTAAAGGTGCCAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG--AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
99529 TTAAAGATG-AA-GTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
99577 TTAAAGA--CAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGGC
1 TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
99625 TTAAA
1 TTAAA
99630 AGAAGACGCC
Statistics
Matches: 428, Mismatches: 44, Indels: 45
0.83 0.09 0.09
Matches are distributed among these distances:
43 35 0.08
44 1 0.00
46 2 0.00
47 3 0.01
48 164 0.38
49 94 0.22
51 3 0.01
52 124 0.29
53 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (50 bp):
TTAAAGATGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
Found at i:99546 original size:197 final size:192
Alignment explanation
Indices: 99087--99634 Score: 635
Period size: 197 Copynumber: 2.8 Consensus size: 192
99077 CTTAGGAATG
* * *
99087 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
1 TTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAG-
** *
99152 CACCAATATGCTGACTT-AAGGCCAGCGATATTGGACTTAAAGATGACAAAGGCGCCAATATGCT
62 TGCCAATATGCTGA-TTCAAGGCCAGCGATATTGGACTTAAAGATG----AGGTGCCAATATGCT
* * *
99216 GATTCAAGGCCAGCGATATTGGAC-T---TGAAGGTGCCAATGTGCTGATTCAAGGCTAGCGACA
122 GATTCAAGGCCAGCTACATTGGACTTAAATGAAGGTGCCAATATGCTGATTCAAGGCTAGCGACA
* *
99277 TTGGGC
187 TTAGAC
* * *
99283 TTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCGGCGACT-TTGGTCTTAAAGA-CAAGGTG
1 TTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTAAAGATGAA-GTG
* * * *
99346 CCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGAGGTACCAATGTGCTGATTCAA
64 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAA
*
99411 GGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGG-TCAGCGATATTAG
129 GGCCAGCTACATTGGACTT-AA-ATGAAGGTGCCAATATGCTGATTCAAGGCT-AGCGACATTAG
99475 AC
191 AC
** *
99477 TTAAAGGTGCCAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGT
1 TTAAAGAAG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGT
* * **
99542 GCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCA
63 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCA
* *
99607 AGGCCAGCTACATTGGGCTTAAAAGAAG
128 AGGCCAGCTACATTGGACTTAAATGAAG
99635 ACGCCACCAA
Statistics
Matches: 302, Mismatches: 35, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
188 34 0.11
189 1 0.00
191 2 0.01
192 40 0.13
193 2 0.01
194 43 0.14
195 5 0.02
196 53 0.18
197 120 0.40
198 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (192 bp):
TTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGTGCC
AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGG
CCAGCTACATTGGACTTAAATGAAGGTGCCAATATGCTGATTCAAGGCTAGCGACATTAGAC
Found at i:99706 original size:28 final size:28
Alignment explanation
Indices: 99649--99800 Score: 182
Period size: 28 Copynumber: 5.3 Consensus size: 28
99639 CACCAACTTG
99649 TGTGGGCTTTTGAAAGGTTTG-CA-TCAACT
1 TGTGGGCTTTT-AAAGG-TTGCCACT-AACT
* * *
99678 TGTGTGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
* *
99706 TGTGGGCTTTTAAAGATTGCTACTAACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
99734 TGTGGGCTTTTAAAGGTTGCCACTGACT
1 TGTGGGCTTTTAAAGGTTGCCACTAACT
*
99762 TGTGGGCTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTT--AAAGGTTGCCACTAACT
99792 TGTGGGCTT
1 TGTGGGCTT
99801 AAAAGGAAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
27 3 0.03
28 68 0.64
29 11 0.10
30 24 0.23
ACGTcount: A:0.19, C:0.16, G:0.28, T:0.37
Consensus pattern (28 bp):
TGTGGGCTTTTAAAGGTTGCCACTAACT
Found at i:99785 original size:30 final size:30
Alignment explanation
Indices: 99675--100110 Score: 261
Period size: 28 Copynumber: 14.6 Consensus size: 30
99665 GTTTGCATCA
* *
99675 ACTTGTGTGCTTTTG--AAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
** * *
99703 ACTTGTGGGCTTTT--AAAGATTGCTACTA
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
*
99731 ACTTGTGGGCTTTT--AAAGGTTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
*
99759 ACTTGTGGGCTTTTGAAAAGGGTGCCACTA
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
** * * *
99789 ACTTGTGGGCTTAAAAGGAAAAAGAGTGCTACGG
1 ACTTGTGGGCTT---TTG-AAAAGGGTGCCACTG
* * ** * *
99823 AGTTGTGAGCTTACAAAAGAAAAAGAGTGCCACAG
1 ACTTGTGGGCTT----TTG-AAAAGGGTGCCACTG
* * * ** *
99858 AGTTGTGGACTTTGGAAAA-TATGCCACCG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
**
99887 ACTTGTGGGCTTCGGAAAAGGGTGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
* * *
99917 ATTTGTGGGC-TTTG--AAGGTTGCCACTA
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
* * * *
99944 ATTTGTGGAC-TTTGAAAAAGATGCCACTG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
* *
99973 ACTTGTGGGC-TTTG-AAAGGTTGCCACTA
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
*
100001 ACTTGTGGGCTTTTGAAAAGGGTGCCACTA
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
** * *
100031 ACTTGTGGGCTTAAAAGGAAAAAGAGTGCCACGG
1 ACTTGTGGGCTT---TTG-AAAAGGGTGCCACTG
* * *
100065 AGTTGTGGGC-TTTGAAAAGGATGCCACTC
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
100094 ACTTGTGGGCTTTTGAA
1 ACTTGTGGGCTTTTGAA
100111 GGGTGAGGAA
Statistics
Matches: 328, Mismatches: 62, Indels: 34
0.77 0.15 0.08
Matches are distributed among these distances:
27 24 0.07
28 83 0.25
29 71 0.22
30 76 0.23
31 1 0.00
33 3 0.01
34 42 0.13
35 28 0.09
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (30 bp):
ACTTGTGGGCTTTTGAAAAGGGTGCCACTG
Found at i:99803 original size:84 final size:84
Alignment explanation
Indices: 99649--99805 Score: 203
Period size: 84 Copynumber: 1.8 Consensus size: 84
99639 CACCAACTTG
* * *
99649 TGTGGGCTTTTGAAAGGTTTGCATCAACTTGTGTGCTTTTGAAGGTTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTTGAAAGGTTTGCATCAACTTGTGGGCTTTTGAAGGGTGCCACTAACTTGTGGGC-
99714 TTTAAAGATTGCTACTAACT
65 TTTAAAGATTGCTACTAACT
*
99734 TGTGGGCTTTT-AAAGG-TTGCCA-CTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTG
1 TGTGGGCTTTTGAAAGGTTTG-CATC-AACTTGTGGGCTTTTG--AAGGGTGCCACTAACTTGTG
*
99796 GGCTTAAAAG
62 GGCTTTAAAG
99806 GAAAAAGAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
83 4 0.06
84 21 0.33
85 17 0.27
86 21 0.33
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (84 bp):
TGTGGGCTTTTGAAAGGTTTGCATCAACTTGTGGGCTTTTGAAGGGTGCCACTAACTTGTGGGCT
TTAAAGATTGCTACTAACT
Found at i:99829 original size:34 final size:35
Alignment explanation
Indices: 99774--99865 Score: 107
Period size: 35 Copynumber: 2.7 Consensus size: 35
99764 TGGGCTTTTG
* * *
99774 AAAAGGGTGCCACTA-ACTTGTGGGCTTA-AAAGGA
1 AAAAGAGTGCCAC-AGAGTTGTGGGCTTACAAAAGA
* * *
99808 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTACAAAAGA
99843 AAAAGAGTGCCACAGAGTTGTGG
1 AAAAGAGTGCCACAGAGTTGTGG
99866 ACTTTGGAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
34 22 0.47
35 25 0.53
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (35 bp):
AAAAGAGTGCCACAGAGTTGTGGGCTTACAAAAGA
Found at i:99892 original size:29 final size:29
Alignment explanation
Indices: 99843--100106 Score: 203
Period size: 29 Copynumber: 8.9 Consensus size: 29
99833 TTACAAAAGA
* * *
99843 AAAAGAGTGCCACAGAGTTGTGGACTTTGG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTGG
* * *
99873 AAAATATGCCACCGACTTGTGGGCTTCGG
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* *
99902 AAAAGGGTGCCACTGATTTGTGGGCTTT-G
1 AAAA-GATGCCACTGACTTGTGGGCTTTGG
* * * * * *
99931 -AAGGTTGCCACTAATTTGTGGACTTTGA
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
99959 AAAAGATGCCACTGACTTGTGGGCTTT-G
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* * * *
99987 AAAGGTTGCCACTAACTTGTGGGCTTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTGG
* * *
100016 AAAAGGGTGCCACTAACTTGTGGGCTTAAAAGG
1 AAAA-GATGCCACTGACTTGTGGGCTT---TGG
* *
100049 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-G
1 -AAAAGA-TGCCACTGACTTGTGGGCTTTGG
*
100079 AAAAGGATGCCACTCACTTGTGGGCTTT
1 AAAA-GATGCCACTGACTTGTGGGCTTT
100107 TGAAGGGTGA
Statistics
Matches: 187, Mismatches: 36, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
27 20 0.11
28 26 0.14
29 71 0.38
30 47 0.25
33 2 0.01
34 21 0.11
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (29 bp):
AAAAGATGCCACTGACTTGTGGGCTTTGG
Found at i:99992 original size:57 final size:57
Alignment explanation
Indices: 99841--100042 Score: 199
Period size: 57 Copynumber: 3.5 Consensus size: 57
99831 GCTTACAAAA
* * * ** ** * **
99841 GAAAAAGAGTGCCACAGAGTTGTGGACTTTGGAAAATATGCCACCGACTTGTGGGCTTCG
1 GAAAAAGA-TGCCACTGACTTGTGGGCTTT-GAAGGT-TGCCACTAACTTGTGGACTTTT
* * * *
99901 GAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTTGCCACTAATTTGTGGAC-TTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGACTTTT
*
99957 GAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGTTGCCACTAACTTGTGGGCTTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTG-AAGGTTGCCACTAACTTGTGGACTTTT
* * *
100015 GAAAAGGGTGCCACTAACTTGTGGGCTT
1 GAAAAAGATGCCACTGACTTGTGGGCTT
100043 AAAAGGAAAA
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
56 28 0.24
57 35 0.29
58 32 0.27
59 18 0.15
60 6 0.05
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (57 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGACTTTT
Found at i:100048 original size:57 final size:57
Alignment explanation
Indices: 99887--100048 Score: 209
Period size: 57 Copynumber: 2.8 Consensus size: 57
99877 TATGCCACCG
** * **
99887 ACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTTGCCACTA
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTAAAAGGTTGCCACTA
* * * * *
99944 ATTTGTGGAC-TTTGAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGTTGCCACTA
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGC-TTAAAAGGTTGCCACTA
*
100001 ACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAAAGG
1 ACTTGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTAAAAGG
100049 AAAAAGAGTG
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
56 24 0.27
57 38 0.43
58 26 0.30
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (57 bp):
ACTTGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTAAAAGGTTGCCACTA
Found at i:100060 original size:34 final size:34
Alignment explanation
Indices: 99993--100085 Score: 86
Period size: 34 Copynumber: 2.8 Consensus size: 34
99983 TTTGAAAGGT
** *
99993 TGCCACTAACTTGTGGGCTT---TTG-AAAAGGG
1 TGCCACTAACTTGTGGGCTTAAAAGGAAAAAGAG
100023 TGCCACTAACTTGTGGGCTTAAAAGGAAAAAGAG
1 TGCCACTAACTTGTGGGCTTAAAAGGAAAAAGAG
** *
100057 TGCCACGGAGTTGTGGGCTTTGAAAAGGA
1 TGCCACTAACTTGTGGGC-TT-AAAAGGA
100086 TGCCACTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
30 20 0.39
33 1 0.02
34 21 0.41
35 2 0.04
36 7 0.14
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (34 bp):
TGCCACTAACTTGTGGGCTTAAAAGGAAAAAGAG
Found at i:101579 original size:30 final size:28
Alignment explanation
Indices: 101545--101616 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 28
101535 ATCCGGACCC
*
101545 TTTTTGTTGTTGTTTATTTCGTTTTTTGGT
1 TTTTTTTTGTTGTTT-TTT-GTTTTTTGGT
*
101575 TTTTTTTTGTTTTGTTTTTTGTTTTTTGTT
1 TTTTTTTTG--TTGTTTTTTGTTTTTTGGT
101605 TTTTTTTTGTTG
1 TTTTTTTTGTTG
101617 AGGACGCCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
28 3 0.08
30 26 0.68
31 3 0.08
32 6 0.16
ACGTcount: A:0.01, C:0.01, G:0.17, T:0.81
Consensus pattern (28 bp):
TTTTTTTTGTTGTTTTTTGTTTTTTGGT
Found at i:101587 original size:7 final size:7
Alignment explanation
Indices: 101545--101612 Score: 68
Period size: 7 Copynumber: 9.4 Consensus size: 7
101535 ATCCGGACCC
101545 TTTTTG-
1 TTTTTGT
*
101551 TTGTTGT
1 TTTTTGT
101558 TTATTTCGT
1 TT-TTT-GT
101567 TTTTTGGT
1 TTTTT-GT
*
101575 TTTTTTT
1 TTTTTGT
101582 TGTTTTGT
1 T-TTTTGT
101590 TTTTTGT
1 TTTTTGT
101597 TTTTTGT
1 TTTTTGT
101604 TTTTT-T
1 TTTTTGT
101610 TTT
1 TTT
101613 GTTGAGGACG
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
6 9 0.17
7 22 0.42
8 18 0.34
9 4 0.08
ACGTcount: A:0.01, C:0.01, G:0.15, T:0.82
Consensus pattern (7 bp):
TTTTTGT
Found at i:101599 original size:18 final size:17
Alignment explanation
Indices: 101574--101615 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
101564 CGTTTTTTGG
101574 TTTT-TTTTTGTTTTGTT
1 TTTTGTTTTTGTTTT-TT
101591 TTTTGTTTTTTGTTTTTT
1 TTTTG-TTTTTGTTTTTT
101609 TTTTGTT
1 TTTTGTT
101616 GAGGACGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.26
18 7 0.30
19 10 0.43
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (17 bp):
TTTTGTTTTTGTTTTTT
Found at i:102946 original size:13 final size:13
Alignment explanation
Indices: 102928--102953 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102918 CAATTTTTTG
102928 TGTATCGATACAT
1 TGTATCGATACAT
102941 TGTATCGATACAT
1 TGTATCGATACAT
102954 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:102968 original size:32 final size:33
Alignment explanation
Indices: 102908--102971 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
102898 TACAAGCCAA
** *
102908 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
102941 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
102972 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:103695 original size:20 final size:22
Alignment explanation
Indices: 103660--103703 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
103650 CTCCCCTTTA
*
103660 TCTCCCCCGTTTATTAA-TAAT
1 TCTCCCCCGTTAATTAAGTAAT
103681 TCTCCCCC-TTAATTAAGTAAT
1 TCTCCCCCGTTAATTAAGTAAT
103702 TC
1 TC
103704 ATATCAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.25, C:0.30, G:0.05, T:0.41
Consensus pattern (22 bp):
TCTCCCCCGTTAATTAAGTAAT
Found at i:105524 original size:13 final size:13
Alignment explanation
Indices: 105506--105531 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105496 ATAATCACCC
105506 TGTATCGATACAA
1 TGTATCGATACAA
105519 TGTATCGATACAA
1 TGTATCGATACAA
105532 GGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:109351 original size:21 final size:23
Alignment explanation
Indices: 109326--109372 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
109316 GCAAGTTTTC
109326 ATTTTTC-TTAGCTAAC-TCATT
1 ATTTTTCATTAGCTAACTTCATT
*
109347 A-TTTTCATTAGCTAACTTCTTT
1 ATTTTTCATTAGCTAACTTCATT
109369 ATTT
1 ATTT
109373 AATCTTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 5 0.23
21 10 0.45
22 5 0.23
23 2 0.09
ACGTcount: A:0.23, C:0.17, G:0.04, T:0.55
Consensus pattern (23 bp):
ATTTTTCATTAGCTAACTTCATT
Found at i:111611 original size:13 final size:13
Alignment explanation
Indices: 111593--111618 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
111583 CAATTTTTTG
111593 TGTATCGATACAT
1 TGTATCGATACAT
111606 TGTATCGATACAT
1 TGTATCGATACAT
111619 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:111633 original size:32 final size:33
Alignment explanation
Indices: 111573--111636 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
111563 TACAAGCCAA
** *
111573 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
111606 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
111637 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:125360 original size:52 final size:52
Alignment explanation
Indices: 125282--125410 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
125272 CGAAATATGA
* * *
125282 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
*
125334 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
125386 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
125411 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGC
Found at i:125423 original size:52 final size:51
Alignment explanation
Indices: 125282--125430 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 51
125272 CGAAATATGA
* *
125282 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
* *
125334 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
*
125386 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
125431 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTAGGC
Found at i:125437 original size:13 final size:13
Alignment explanation
Indices: 125419--125443 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125409 CAAAGATCAG
125419 TGTATCGATACAA
1 TGTATCGATACAA
125432 TGTATCGATACA
1 TGTATCGATACA
125444 TTTTTTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:125500 original size:33 final size:33
Alignment explanation
Indices: 125463--125529 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
125453 AGTAGCTTAA
125463 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
125496 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
125529 A
1 A
125530 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:125503 original size:13 final size:13
Alignment explanation
Indices: 125485--125509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
125475 CAAAAAAATA
125485 TGTATCGATACAT
1 TGTATCGATACAT
125498 TGTATCGATACA
1 TGTATCGATACA
125510 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:125598 original size:32 final size:32
Alignment explanation
Indices: 125562--125623 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
125552 TGACCGTTGG
*
125562 GATACATTGTTAGAATGTATTGATACATTTTT
1 GATACATTGTTAGAATGTATCGATACATTTTT
125594 GATACATTGTTAGAATGTATCGATACATTT
1 GATACATTGTTAGAATGTATCGATACATTT
125624 GGACCAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (32 bp):
GATACATTGTTAGAATGTATCGATACATTTTT
Found at i:130704 original size:20 final size:20
Alignment explanation
Indices: 130675--130752 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
130665 GTAAAAAGAC
130675 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* *
130695 AGAATATATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
130715 TA-CATGTATCGATATATTGA
1 -AGAATGTATCGATACATTGA
*
130735 AAAATGTATCGATACATT
1 AGAATGTATCGATACATT
130753 TGGGTAAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:131402 original size:29 final size:29
Alignment explanation
Indices: 131314--132175 Score: 859
Period size: 29 Copynumber: 29.9 Consensus size: 29
131304 TAAAAAAATG
*
131314 GTGCCACTAACTTATGTGGGCTTTGAAAAGA
1 GTGCCACTGAC-T-TGTGGGCTTTGAAAAGA
*
131345 GTTGCCA-TAAACTCGTGTGGGCTTTGAAAAGA
1 G-TGCCACT-GACT--TGTGGGCTTTGAAAAGA
*
131377 GTGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* **
131405 GTGCCACTGACTTGTGGGCCTTG-ACTGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* ** * * * *
131433 CG-ACCAACCCA-ATCTCGAC---GAAAA-A
1 -GTGCC-ACTGACTTGTGGGCTTTGAAAAGA
** * * *
131458 AAG-AACTGACTTATGAGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
131486 GTGCCACTAACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
131514 GTGCCACTGACTTACGTGGGCTTTGAAAGGA
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
* *
131545 -TGCCACTAACTTACGTGGGCTTTGAAAGGA
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
* * * *
131575 -TGCCCCTAACTTATGGGCTTTGAAAATA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
131603 GTGCCACTGACTTATAGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
131631 GTGTCACTGACTTGTGGGCTTTGAAAAAA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
131660 GTGCCACTGATTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
131688 GTGCCACTGACTTGCATGGGCTTTGAAAAG-
1 GTGCCACTGACTTG--TGGGCTTTGAAAAGA
* * *
131718 GTGCTACTAACTTGTGGGCTTTGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
131747 -TGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
131774 GTGCCACTAACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
131803 GTGCCACTGACTTGTAGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
** *
131832 GTTGCCACCAACTCATGTGGGTTTTGAAAAGA
1 G-TGCCACTGACT--TGTGGGCTTTGAAAAGA
131864 GTGCCACTGACTTGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
131892 GTGCCACTGACTTTTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
131921 GTGCCACTGAATTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
131949 GTACCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
131978 GTGCCACTGATTTGTGGGCTTTGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
132007 GTGCCACTAACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
132035 GTGGCACTGACTTATGGGATTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
132064 GTGCCACTAACTTATGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
132093 GTGCTAGTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
132121 GTGCCACTGACTCGTGGACTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
132150 GTGCCACTGACTTTTGGGCTTTGAAA
1 GTGCCACTGACTTGTGGGCTTTGAAA
132176 GGGATGAACA
Statistics
Matches: 690, Mismatches: 109, Indels: 66
0.80 0.13 0.08
Matches are distributed among these distances:
23 3 0.00
24 3 0.00
25 2 0.00
26 1 0.00
27 8 0.01
28 255 0.37
29 268 0.39
30 80 0.12
31 27 0.04
32 43 0.06
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (29 bp):
GTGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:131649 original size:57 final size:58
Alignment explanation
Indices: 131314--132175 Score: 879
Period size: 57 Copynumber: 14.9 Consensus size: 58
131304 TAAAAAAATG
*
131314 GTGCCACTAACTTATGTGGGCTTTGAAAAGAGTTGCCA-TAAACTCGTGTGGGCTTTGAAAAGA
1 GTGCCACTAAC-T-TGTGGGCTTTGAAAAGAG-TGCCACT-GACT--TGTGGGCTTTGAAAAGA
* * * **
131377 GTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCCTTG-ACTGA
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * * * ** * * *
131433 CG-ACCAACCCAA--TCTCGAC---GAAAA-AAAG-AACTGACTTATGAGCTTTGAAAAGA
1 -GTGCC-A-CTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
131486 GTGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTACGTGGGCTTTGAAAGGA
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTT--GTGGGCTTTGAAAAGA
* * * * *
131545 -TGCCACTAACTTACGTGGGCTTTGAAAGGA-TGCCCCTAACTTATGGGCTTTGAAAATA
1 GTGCCACTAACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * * * *
131603 GTGCCACTGACTTATAGGCTTTG-AAAGGGTGTCACTGACTTGTGGGCTTTGAAAAAA
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
131660 GTGCCACTGATTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGCATGGGCTTTGAAAAG-
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG--TGGGCTTTGAAAAGA
* * *
131718 GTGCTACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
*
131774 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTAGGCTTTGAAAAGA
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
131832 GTTGCCACCAACTCATGTGGGTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-
1 G-TGCCACTAACT--TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
131892 GTGCCACTGACTTTTGGGCTTTGAAAAGAGTGCCACTGAATTGTGGGCTTTG-AAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
131949 GTACCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAGGA
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
132007 GTGCCACTAACTTGTGGGCTTTG-AAAGGGTGGCACTGACTTATGGGATTTGAAAAGA
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
132064 GTGCCACTAACTTATGGGCTTTGAAAAGAGTGCTAGTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
132121 GTGCCACTGACTCGTGGACTTTGAAAAGAGTGCCACTGACTTTTGGGCTTTGAAA
1 GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
132176 GGGATGAACA
Statistics
Matches: 665, Mismatches: 100, Indels: 73
0.79 0.12 0.09
Matches are distributed among these distances:
51 3 0.00
52 17 0.03
53 11 0.02
54 3 0.00
55 7 0.01
56 54 0.08
57 295 0.44
58 113 0.17
59 67 0.10
60 27 0.04
61 57 0.09
62 1 0.00
63 10 0.02
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (58 bp):
GTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:131762 original size:86 final size:86
Alignment explanation
Indices: 131462--132177 Score: 897
Period size: 86 Copynumber: 8.3 Consensus size: 86
131452 GAAAAAAAGA
* * *
131462 ACTGACTTATGAGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
1 ACTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
*
131527 ACGTGGGCTTTGAAAGGA-TGCC
66 --GTGGGCTTTGAAAAGAGTGCC
* * * **
131549 ACTAACTTACGTGGGCTTTGAAAGGA-TGCCCCTAACTTATGGGCTTTGAAAATAGTGCCACTGA
1 ACTGACTT--GTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCACTGA
* * * *
131613 CTTATAGGCTTTG-AAAGGGTGTC
63 CTTGTGGGCTTTGAAAAGAGTGCC
** * *
131636 ACTGACTTGTGGGCTTTGAAAAAAGTGCCACTGATTTGTGGGCTTTGAAAGGGTGCCACTGACTT
1 ACTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
*
131701 GCATGGGCTTTGAAAAG-GTGCT
66 G--TGGGCTTTGAAAAGAGTGCC
* * *
131723 ACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTT
1 ACTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
131787 GTGGGCTTTGAAAAGAGTGCC
66 GTGGGCTTTGAAAAGAGTGCC
* * * * *
131808 ACTGACTTGTAGGCTTTGAAAAGAGTTGCCACCAACTCATGTGGGTTTTGAAAAGAGTGCCACTG
1 ACTGACTTGTGGGCTTTGAAAGGAG-TGCCACTAACT--TGTGGGCTTTG-AAAGGGTGCCACTG
131873 ACTTGTGGGCTTTGAAAAG-GTGCC
62 ACTTGTGGGCTTTGAAAAGAGTGCC
* * *
131897 ACTGACTTTTGGGCTTTGAAAAGAGTGCCACTGAA-TTGTGGGCTTTGAAAGGGTACCACTGACT
1 ACTGACTTGTGGGCTTTGAAAGGAGTGCCACT-AACTTGTGGGCTTTGAAAGGGTGCCACTGACT
131961 TGTGGGCTTTGAAAAGAGTGCC
65 TGTGGGCTTTGAAAAGAGTGCC
* *
131983 ACTGATTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGGCACTGACTT
1 ACTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
* *
132048 ATGGGATTTGAAAAGAGTGCC
66 GTGGGCTTTGAAAAGAGTGCC
* * * * * * *
132069 ACTAACTTATGGGCTTTGAAAAGAGTGCTAGTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTC
1 ACTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
*
132134 GTGGACTTTGAAAAGAGTGCC
66 GTGGGCTTTGAAAAGAGTGCC
*
132155 ACTGACTTTTGGGCTTTGAAAGG
1 ACTGACTTGTGGGCTTTGAAAGG
132178 GATGAACATT
Statistics
Matches: 544, Mismatches: 68, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
84 14 0.03
85 88 0.16
86 245 0.45
87 66 0.12
88 31 0.06
89 69 0.13
90 31 0.06
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (86 bp):
ACTGACTTGTGGGCTTTGAAAGGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
GTGGGCTTTGAAAAGAGTGCC
Found at i:133308 original size:19 final size:18
Alignment explanation
Indices: 133284--133351 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
133274 CAGTAGCTAA
133284 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
133303 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
133318 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
133335 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
133352 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:133324 original size:13 final size:13
Alignment explanation
Indices: 133306--133330 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
133296 ACAATACTTA
133306 TGTATCGATACAT
1 TGTATCGATACAT
133319 TGTATCGATACA
1 TGTATCGATACA
133331 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:133328 original size:32 final size:32
Alignment explanation
Indices: 133287--133349 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
133277 TAGCTAATTA
*
133287 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
133319 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
133350 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:144592 original size:6 final size:6
Alignment explanation
Indices: 144582--144697 Score: 114
Period size: 6 Copynumber: 19.5 Consensus size: 6
144572 ATTCTTTTCT
* * *
144582 AAAAAT AAAAAA AAAAAC AAAAAC AAAAGC AAAAA- AAAAAC AAAAAC
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC
* * *
144629 AAAAGCGAA AAAAAC AAAAA- AAAACC AAAAAC AAAAGC AAAAA- AAAAAC
1 AAAA---AC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC
*
144678 AAAAGC AAAAA- AAAAAC AAA
1 AAAAAC AAAAAC AAAAAC AAA
144698 GAAAAAGAGA
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
5 19 0.21
6 67 0.74
9 5 0.05
ACGTcount: A:0.83, C:0.12, G:0.04, T:0.01
Consensus pattern (6 bp):
AAAAAC
Found at i:144609 original size:17 final size:17
Alignment explanation
Indices: 144582--144697 Score: 117
Period size: 17 Copynumber: 6.5 Consensus size: 17
144572 ATTCTTTTCT
* *
144582 AAAAATAAAAAAAAAAA
1 AAAAACAAAAACAAAAA
*
144599 CAAAAACAAAAGCAAAAA
1 -AAAAACAAAAACAAAAA
144617 AAAAACAAAAACAAAAGCGAA
1 AAAAACAAAAAC-AAA---AA
*
144638 AAAAACAAAAA-AAAACC
1 AAAAACAAAAACAAAA-A
*
144655 AAAAACAAAAGCAAAAA
1 AAAAACAAAAACAAAAA
*
144672 AAAAACAAAAGCAAAAA
1 AAAAACAAAAACAAAAA
144689 AAAAACAAA
1 AAAAACAAA
144698 GAAAAAGAGA
Statistics
Matches: 85, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
16 1 0.01
17 47 0.55
18 21 0.25
19 3 0.04
21 13 0.15
ACGTcount: A:0.83, C:0.12, G:0.04, T:0.01
Consensus pattern (17 bp):
AAAAACAAAAACAAAAA
Found at i:144615 original size:23 final size:23
Alignment explanation
Indices: 144589--144697 Score: 148
Period size: 23 Copynumber: 4.6 Consensus size: 23
144579 TCTAAAAATA
144589 AAAAAAAAAACAAAAACAAAAGC
1 AAAAAAAAAACAAAAACAAAAGC
144612 AAAAAAAAAACAAAAACAAAAGC
1 AAAAAAAAAACAAAAACAAAAGC
* *
144635 GAAAAAAACAAAAAAAAACCAAAAAC
1 -AAAAAAA-AAACAAAAA-CAAAAGC
*
144661 AAAAGCAAAAA-AAAAACAAAAGC
1 AAAA-AAAAAACAAAAACAAAAGC
144684 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
144698 GAAAAAGAGA
Statistics
Matches: 76, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
22 5 0.07
23 36 0.47
24 12 0.16
25 15 0.20
26 8 0.11
ACGTcount: A:0.83, C:0.13, G:0.05, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAACAAAAACAAAAGC
Found at i:144703 original size:55 final size:55
Alignment explanation
Indices: 144589--144703 Score: 169
Period size: 55 Copynumber: 2.1 Consensus size: 55
144579 TCTAAAAATA
**
144589 AAAAAAAAAACAAAAACAAAAGCAAAAAAAAAACAAAAACAAAAGCGAAAAAAAC
1 AAAAAAAAAACAAAAACAAAAGCAAAAAAAAAACAAAAACAAAAGAAAAAAAAAC
* * *
144644 AAAAAAAAACCAAAAACAAAAGCAAAAAAAAAACAAAAGCAAAA-AAAAAACAAAG
1 AAAAAAAAAACAAAAACAAAAGCAAAAAAAAAACAAAAACAAAAGAAAAAA-AAAC
144699 AAAAA
1 AAAAA
144704 GAGAGAAAAG
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 4 0.07
55 50 0.93
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (55 bp):
AAAAAAAAAACAAAAACAAAAGCAAAAAAAAAACAAAAACAAAAGAAAAAAAAAC
Found at i:144718 original size:1 final size:1
Alignment explanation
Indices: 144582--144703 Score: 55
Period size: 1 Copynumber: 122.0 Consensus size: 1
144572 ATTCTTTTCT
* * * ** * * *** *
144582 AAAAATAAAAAAAAAAACAAAAACAAAAGCAAAAAAAAAACAAAAACAAAAGCGAAAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * ** * ** * *
144647 AAAAAACCAAAAACAAAAGCAAAAAAAAAACAAAAGCAAAAAAAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
144704 GAGAGAAAAG
Statistics
Matches: 86, Mismatches: 35, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 86 1.00
ACGTcount: A:0.83, C:0.11, G:0.05, T:0.01
Consensus pattern (1 bp):
A
Found at i:145836 original size:55 final size:55
Alignment explanation
Indices: 145771--146025 Score: 323
Period size: 55 Copynumber: 4.5 Consensus size: 55
145761 TCTCTCCTTT
* * * *
145771 CGCCCTTTAGTCCTCAAAGGGCAAGACGCCTTTCAAAGCCCACACAAGTTGATGG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
*
145826 CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* * *
145881 CGCCTTTTAGTCCTCAAAAAGCAGGACGTCTTTCAAAGCCCACACAAGCTGGTGG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* *
145936 CACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGCC-TTT-C----AAAGCCCACACAAGTTGGTGG
* **
145997 C-ACTTCCCAGTCCTCAAAGAGCAGGACGC
1 CGCCTT-TTAGTCCTCAAAGAGCAGGACGC
146026 TCCCTCCTTT
Statistics
Matches: 175, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
55 127 0.73
56 3 0.02
57 1 0.01
60 3 0.02
61 41 0.23
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (55 bp):
CGCCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
Found at i:146129 original size:94 final size:96
Alignment explanation
Indices: 145938--146116 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 96
145928 GCTGGTGGCA
*
145938 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1 CCTTTTAGTCCTCAAAGAGCAGGATG----TTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTC
146003 CCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCG
62 CCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCG
* **
146038 CCTTTTTGTCCTCAAAGAGCAGGATG-T-CTTTCAAAGCCCACACAAGTTGGTGGCACCTT-TTA
1 CCTTTTAGTCCTCAAAGAGCAGGATGTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCA
146100 GTCCTCAAAGAGCAGGA
65 GTCCTCAAAGAGCAGGA
146117 GGCCTTCTCC
Statistics
Matches: 74, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
94 45 0.61
95 4 0.05
100 25 0.34
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
CCTTTTAGTCCTCAAAGAGCAGGATGTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAG
TCCTCAAAGAGCAGGACGCTCCCTCCTTTCG
Found at i:146145 original size:61 final size:57
Alignment explanation
Indices: 146039--146360 Score: 288
Period size: 55 Copynumber: 5.6 Consensus size: 57
146029 CTCCTTTCGC
* * *
146039 CTTTTTGTCCTCAAAGAGCAGGATGTCTTTC---AAAGCCCACACAAGTTGGTGGCA
1 CTTTTAGTCCTCAAAGAGCAGGACGCCTTTCTTTAAAGCCCACACAAGTTGGTGGCA
*
146093 CCTTTTAGTCCTCAAAGAGCAGGAGGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 -CTTTTAGTCCTCAAAGAGCAGGACGCCTT-T-C-TTTAAAGCCCACACAAGTTGGTGGCA
** * ** *
146154 CTTCCAAGTCCTCAAAGAGCAGGACGCCTTTC---AAAGCCCACACGAGTTGACGGTA
1 CTT-TTAGTCCTCAAAGAGCAGGACGCCTTTCTTTAAAGCCCACACAAGTTGGTGGCA
* *
146209 -TTTTCCAGTTCTCAAAGAGCAGGACGCCTTTC---AAAGCCCACACGAGTTGGTGGCA
1 CTTTT--AGTCCTCAAAGAGCAGGACGCCTTTCTTTAAAGCCCACACAAGTTGGTGGCA
* *
146264 -TTTCTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCA
1 CTTT-T-AGTCCTCAAAGAGCAGGACGCC-TTT-C-TTTAAAGCCCACACAAGTTGGTGGCA
* * *
146325 CCTTCTAGTCCTCAAAGAGTAGGACGCTCTCTCTTT
1 -CTTTTAGTCCTCAAAGAGCAGGACGC-CTTTCTTT
146361 TCACCCTTTA
Statistics
Matches: 224, Mismatches: 24, Indels: 34
0.79 0.09 0.12
Matches are distributed among these distances:
54 2 0.01
55 114 0.51
56 5 0.02
57 2 0.01
59 4 0.02
60 5 0.02
61 88 0.39
62 2 0.01
63 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (57 bp):
CTTTTAGTCCTCAAAGAGCAGGACGCCTTTCTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:146164 original size:155 final size:155
Alignment explanation
Indices: 145881--146442 Score: 725
Period size: 155 Copynumber: 3.5 Consensus size: 155
145871 AAGTTGGTGG
* *
145881 CGCCTTTTAGTCCTCAAAAAGCAGGACGTCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
*
145946 TCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCT
66 TCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAAGTCCT
146011 CAAAGAGCAGGACGCTCCCTCCTTT
131 CAAAGAGCAGGACGCTCCCTCCTTT
* *
146036 CGCCTTTTTGTCCTCAAAGAGCAGGATGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* *
146101 TCCTCAAAGAGCAGGAGGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAAGTCCT
66 TCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAAGTCCT
* *
146166 CAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGA
131 CAAAGAGCAGGACG-C--T-----CCCTC-C---TT-T
** * * *
146204 CGGTATTTTCCAGTTCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA--TTT
1 C-GCCTTTT--AGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
* *
146267 CTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTT-CT
63 -T-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCA
* * *
146331 AGTCCTCAAAGAGTAGGACGCTCTCTCTTTT
125 AGTCCTCAAAGAGCAGGACGCTCCCTCCTTT
* * * *
146362 CACCCTTTAATCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
146427 TCCTCAAAGAGCAGGA
66 TCCTCAAAGAGCAGGA
146443 CGTCTTTTAA
Statistics
Matches: 352, Mismatches: 34, Indels: 42
0.82 0.08 0.10
Matches are distributed among these distances:
155 200 0.57
156 1 0.00
157 6 0.02
158 2 0.01
159 2 0.01
163 7 0.02
164 1 0.00
167 2 0.01
168 2 0.01
169 8 0.02
170 2 0.01
171 116 0.33
172 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (155 bp):
CGCCTTTTAGTCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
TCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAAGTCCT
CAAAGAGCAGGACGCTCCCTCCTTT
Found at i:146192 original size:210 final size:207
Alignment explanation
Indices: 145826--146235 Score: 531
Period size: 210 Copynumber: 2.0 Consensus size: 207
145816 AAGTTGATGG
*
145826 CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCGCCTTTTAG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* **
145891 TCCTCAAAAAGCAGGACGTCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGA
66 TCCTCAAAAAGCAGGACCTCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAAGTCCTCAAAGA
* **
145956 GCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
131 GCAGGACGCCTTTTCC---TAAAGCCCACACAAGTTGACGGCACTTCCCAGTCCTCAAAGAGCAG
146021 GACGCTCCCTCCTTT
193 GACGCTCCCTCCTTT
* ***
146036 CGCCTTTTTGTCCTCAAAGAGCAGGATGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
1 CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * *
146101 TCCTCAAAGAGCAGGAGGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAAGTCC
66 TCCTCAAAAAGCAGGA---C--CT-CTTTCAAAGCCCACACAAGCTGGTGGCACCTT-CAAGTCC
* * * * *
146165 TCAAAGAGCAGGACGCC-TTT-C-AAAGCCCACACGAGTTGACGGTATTTTCCAGTTCTCAAAGA
124 TCAAAGAGCAGGACGCCTTTTCCTAAAGCCCACACAAGTTGACGGCACTTCCCAGTCCTCAAAGA
146227 GCAGGACGC
189 GCAGGACGC
146236 CTTTCAAAGC
Statistics
Matches: 174, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
210 118 0.68
213 1 0.01
214 1 0.01
215 7 0.04
216 47 0.27
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (207 bp):
CGCCTTTTAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTTAG
TCCTCAAAAAGCAGGACCTCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAAGTCCTCAAAGA
GCAGGACGCCTTTTCCTAAAGCCCACACAAGTTGACGGCACTTCCCAGTCCTCAAAGAGCAGGAC
GCTCCCTCCTTT
Found at i:146247 original size:265 final size:258
Alignment explanation
Indices: 145705--146287 Score: 756
Period size: 265 Copynumber: 2.2 Consensus size: 258
145695 GATGTCTTTT
* * *
145705 CCTTTTAAAGCCCACACAAGTTGTTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCCTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTT
* *
145770 TCGCCCTTTAGTCCTCAAAGGGCAAGACGCCTTTCAAAGCCCACACAAGTTGATGGCGCCTTTTA
66 TCGCCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGATGGCACCTTTTA
* **
145835 GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCGCCTTTTAGTCCTCAAAA
131 GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCGACTTCAAGTCCTCAAAA
* ** *
145900 AGCAGGACGTCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATG
196 AGCAGGACGCCTTTCAAAGCCCACACAAGCTGACGGCA-CTTTTAGTCCTCAAAGAGCAGGACG
145964 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCC
1 CC-TTT-C----AAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCC
* * * * * *
146029 CTCCTTTCGCCTTTTTGTCCTCAAAGAGCAGGATGTCTTTCAAAGCCCACACAAGTTGGTGGCAC
60 CTCCTTTCGCCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGATGGCAC
* *
146094 CTTTTAGTCCTCAAAGAGCAGGAGGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGC-ACTTC
125 CTTTTAGTCCTCAAAGAGCAGGA------CACCTTTCAAAGCCCACACAAGTTGGTGGCGACTT-
* * * * *
146158 CAAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGACGGTA-TTTTCCAGTTCTC
183 CAAGTCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGCTGACGGCACTTTT--AGTCCTC
146222 AAAGAGCAGGACG
246 AAAGAGCAGGACG
* * *
146235 CCTTTCAAAGCCCACACGAGTTGGTGGCATTTCTCAGTCCTCAAAGAGCAGGA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA
146288 TGCCTTTTCC
Statistics
Matches: 281, Mismatches: 28, Indels: 24
0.84 0.08 0.07
Matches are distributed among these distances:
259 2 0.01
260 3 0.01
265 175 0.62
269 5 0.02
270 6 0.02
271 90 0.32
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (258 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTT
TCGCCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGATGGCACCTTTTA
GTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCGACTTCAAGTCCTCAAAA
AGCAGGACGCCTTTCAAAGCCCACACAAGCTGACGGCACTTTTAGTCCTCAAAGAGCAGGACG
Found at i:146276 original size:326 final size:319
Alignment explanation
Indices: 145774--146504 Score: 954
Period size: 326 Copynumber: 2.3 Consensus size: 319
145764 CTCCTTTCGC
* * * * * * **
145774 CCTTT-AGTCCTCAAAGGGCAAGA-CGCCTTTCAAAGCCCACACAAGTTGATGGCGCCTTTTAGT
1 CCTTTCAGTCCTCAAAGAGCAGGACCTCCTTTTAAAGCCCACACAAGTTGGTGGC-ACTTCCAGT
* ** *
145837 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCGCCTTTTAGTCCTCAAAAAG
65 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGACGCGCATTTTAGTCCTCAAAAAG
*
145902 CAGGACGTCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCT
130 CAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCA-CTTTTAGTCCTCAAAGAGCAGGATGCCT
*
145967 TTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCTCCCT
194 TTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCAGGACGCTCCCT
* * ** *
146031 CCTTTCGCCTTTTTGTCCTCAAAGAGCAGGATGTCTTTCAAAGCCCACACAAGTTGGTGGCA
258 CCTTTCACCCTTTAATCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCA
*
146093 CCTTTTAGTCCTCAAAGAGCAGGAGGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
1 CCTTTCAGTCCTCAAAGAGCAGGA---C--CTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTC
* * *
146158 CAAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTT-GACG-GTATTTTCCAGTTCT
61 C-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGACGCGCATTTT--AGTCCT
* * *
146221 CAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA-TTTCTCAGTCCTCAAAGAGCA
123 CAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACTTT-T-AGTCCTCAAAGAGCA
* *
146285 GGATGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGTAGGAC
186 GGATGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGAC
* *
146350 GCTCTCTCTTTTCACCCTTTAATCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGT
251 GCTCCCTCCTTTCACCCTTTAATCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGT
146415 GGCA
316 GGCA
* * * * *
146419 CCTTTCAGTCCTCAAAGAGCAGGACGT-CTTTTAAGGCCTACACGAGTTGGTGGCACCCTCCAGT
1 CCTTTCAGTCCTCAAAGAGCAGGACCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGT
* *
146483 CCTCAAAGAACAAGACGCCTTT
65 CCTCAAAGAGCAGGACGCCTTT
146505 TTCTTTTCAA
Statistics
Matches: 361, Mismatches: 37, Indels: 27
0.85 0.09 0.06
Matches are distributed among these distances:
319 5 0.01
320 64 0.18
321 5 0.01
323 1 0.00
324 8 0.02
325 6 0.02
326 269 0.75
327 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (319 bp):
CCTTTCAGTCCTCAAAGAGCAGGACCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTC
CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGACGCGCATTTTAGTCCTCAAAAAGC
AGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACTTTTAGTCCTCAAAGAGCAGGATGCCTTT
TCCTTTTAAAACCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCTCCCTCCT
TTCACCCTTTAATCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:146386 original size:210 final size:211
Alignment explanation
Indices: 146162--146559 Score: 543
Period size: 210 Copynumber: 1.9 Consensus size: 211
146152 CACTTCCAAG
* * * *
146162 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGACGGTA-TTTTCCAGTTCTCAAAG
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGACGGCACCTTT-CAGTCCTCAAAG
** * * *
146226 AGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCA-TTTCTCAGTCCTCAAAGAGCAGGATG
65 AGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTC-CAGTCCTCAAAGAACAAGACG
* *
146290 CCTTTTCCTTTT-AAAACCCACACAAGTTGGTGGCACCTT-CTAGTCCTCAAAGAGTAGGACGCT
129 CCTTTTCCTTTTCAAAACCCACACAAATTGGTGGCA-CTTGCTAGCCCTCAAAGAGTAGGACGCT
146353 CTCTCTTTTCACCCTTTAA
193 CTCTCTTTTCACCCTTTAA
* **
146372 TCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGACGGCACCTTTCAGTCCTCAAAGA
* * * *
146437 GCAGGACGTCTTTTAAGGCCTACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAACAAGACGCC
66 GCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAACAAGACGCC
* * * *
146502 TTTTTCTTTTCAAAGCCCACTCAAATTGGTGGCACTTGGTAGCCCTCAAAGAGTAGGA
131 TTTTCCTTTTCAAAACCCACACAAATTGGTGGCACTTGCTAGCCCTCAAAGAGTAGGA
146560 GGCACTTTAT
Statistics
Matches: 162, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
210 119 0.73
211 43 0.27
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (211 bp):
TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGACGGCACCTTTCAGTCCTCAAAGA
GCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAACAAGACGCC
TTTTCCTTTTCAAAACCCACACAAATTGGTGGCACTTGCTAGCCCTCAAAGAGTAGGACGCTCTC
TCTTTTCACCCTTTAA
Found at i:146505 original size:55 final size:55
Alignment explanation
Indices: 146372--146505 Score: 187
Period size: 55 Copynumber: 2.4 Consensus size: 55
146362 CACCCTTTAA
* * *
146372 TCCTCAAAGAGCAGGACGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
1 TCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCCAG
* * *
146427 TCCTCAAAGAGCAGGACGTCTTTTAAGGCCTACACGAGTTGGTGGCACCCTCCAG
1 TCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCCAG
* * *
146482 TCCTCAAAGAACAAGACGCCTTTT
1 TCCTCAAAGAGCAGGACGTCTTTT
146506 TCTTTTCAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 70 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (55 bp):
TCCTCAAAGAGCAGGACGTCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCCAG
Found at i:146645 original size:46 final size:43
Alignment explanation
Indices: 146545--146814 Score: 216
Period size: 42 Copynumber: 6.2 Consensus size: 43
146535 ACTTGGTAGC
* * * * *
146545 CCTCAAAGAGTAGGAGGCACTTTATTTTCC-TC-TTTCTTTTGT
1 CCTCAAAAAGCAGGACGCTCTTTA-TTTCCTTCTTTTCCTTTGT
*
146587 CCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCCTTCTAGT
1 CCTCAAAAAGCAGGACGCTCTTTATTTCCTTCTTTT-CCTT-T-GT
* *
146633 CCTCAAAAAGCAGGACACAT-TTCCT-TTTCCTT-TTCTCCTTTGT
1 CCTCAAAAAGCAGGACGC-TCTT--TATTTCCTTCTTTTCCTTTGT
* *
146676 CCTCAAAAAGCAAGACACTCTTTATTTCCTTCTTTTCCCTTCTAGT
1 CCTCAAAAAGCAGGACGCTCTTTATTTCCTTCTTTT-CCTT-T-GT
* * * *
146722 CCTCAAAGACCAGGACGCACTTTATTT--TCCTTTTCCTTTTGT
1 CCTCAAAAAGCAGGACGCTCTTTATTTCCTTCTTTTCC-TTTGT
* * *
146764 CCTCAGAGAGCAGGACG-TATTTCATTTCCTT-TTTTCCTTTGT
1 CCTCAAAAAGCAGGACGCTCTTT-ATTTCCTTCTTTTCCTTTGT
146806 CCTCAAAAA
1 CCTCAAAAA
146815 ATAGGACACC
Statistics
Matches: 188, Mismatches: 22, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
41 9 0.05
42 64 0.34
43 36 0.19
44 17 0.09
45 6 0.03
46 47 0.25
47 8 0.04
48 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.40
Consensus pattern (43 bp):
CCTCAAAAAGCAGGACGCTCTTTATTTCCTTCTTTTCCTTTGT
Found at i:146697 original size:89 final size:87
Alignment explanation
Indices: 146562--146823 Score: 313
Period size: 89 Copynumber: 3.0 Consensus size: 87
146552 GAGTAGGAGG
146562 CACTTTATTTTCCTCTTTCT-TTTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCTTTTCCC
1 CACTTTATTTTCCT-TTTCTCTTTGTCCTCAAAGAGCAGGAC-CTCTTTATTTCCTTCTTTTCCC
*
146626 TTCTAGTCCTCAAAAAGCAGGACA
64 TTCTAGTCCTCAAAAAACAGGACA
* * *
146650 CA-TTTCCTTTTCCTTTTCTCCTTTGTCCTCAAAAAGCAAGACACTCTTTATTTCCTTCTTTTCC
1 CACTTT-ATTTTCCTTTTCT-CTTTGTCCTCAAAGAGCAGGAC-CTCTTTATTTCCTTCTTTTCC
* * *
146714 CTTCTAGTCCTCAAAGACCAGGACG
63 CTTCTAGTCCTCAAAAAACAGGACA
* * *
146739 CACTTTATTTTCCTTTTC-CTTTTGTCCTCAGAGAGCAGGACGTATTTCATTTCCTT-TTTT-CC
1 CACTTTATTTTCCTTTTCTC-TTTGTCCTCAAAGAGCAGGACCTCTTT-ATTTCCTTCTTTTCCC
*
146801 TT-T-GTCCTCAAAAAATAGGACA
64 TTCTAGTCCTCAAAAAACAGGACA
146823 C
1 C
146824 CCATTCCATT
Statistics
Matches: 151, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
84 16 0.11
85 1 0.01
86 4 0.03
87 17 0.11
88 35 0.23
89 75 0.50
90 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.11, T:0.40
Consensus pattern (87 bp):
CACTTTATTTTCCTTTTCTCTTTGTCCTCAAAGAGCAGGACCTCTTTATTTCCTTCTTTTCCCTT
CTAGTCCTCAAAAAACAGGACA
Found at i:146821 original size:42 final size:41
Alignment explanation
Indices: 146577--146814 Score: 183
Period size: 46 Copynumber: 5.5 Consensus size: 41
146567 TATTTTCCTC
* * *
146577 TTTCTTTTGTCCTCAAAGAGCAGGACGCTCTTTATTTCCTTCT
1 TTTCCTTTGTCCTCAAAAAGCAGGACG-TATTTATTTCCTT-T
** *
146620 TTTCCCTTCTAGTCCTCAAAAAGCAGGACACATTTCCTTTTCCTTT
1 TTT-CCTT-T-GTCCTCAAAAAGCAGGACGTATTT--ATTTCCTTT
* * * *
146666 TCTCCTTTGTCCTCAAAAAGCAAGACACTCTTTATTTCCTTCT
1 TTTCCTTTGTCCTCAAAAAGCAGGAC-GTATTTATTTCCTT-T
* * *
146709 TTTCCCTTCTAGTCCTCAAAGACCAGGACGCACTTTATTTTCC--T
1 TTT-CCTT-T-GTCCTCAAAAAGCAGGACGTA-TTTA-TTTCCTTT
* *
146753 TTTCCTTTTGTCCTCAGAGAGCAGGACGTATTTCATTTCCTTT
1 TTTCC-TTTGTCCTCAAAAAGCAGGACGTATTT-ATTTCCTTT
146796 TTTCCTTTGTCCTCAAAAA
1 TTTCCTTTGTCCTCAAAAA
146815 ATAGGACACC
Statistics
Matches: 155, Mismatches: 24, Indels: 33
0.73 0.11 0.16
Matches are distributed among these distances:
41 8 0.05
42 38 0.25
43 32 0.21
44 17 0.11
45 9 0.06
46 39 0.25
47 12 0.08
ACGTcount: A:0.20, C:0.28, G:0.11, T:0.41
Consensus pattern (41 bp):
TTTCCTTTGTCCTCAAAAAGCAGGACGTATTTATTTCCTTT
Found at i:147477 original size:19 final size:18
Alignment explanation
Indices: 147453--147515 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
147443 ATTCAGTAAA
147453 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
*
147472 TGTATCCATAC--AA---
1 TGTATCGATACATAAGTT
147485 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
147504 TGTATCGATACA
1 TGTATCGATACA
147516 ATGTATCGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:147492 original size:32 final size:32
Alignment explanation
Indices: 147451--147523 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
147441 ACATTCAGTA
147451 AATGTATCGATACATAAGTGTTGTATCCATAC
1 AATGTATCGATACATAAGTGTTGTATCCATAC
* *
147483 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCCATAC
147515 AATGTATCG
1 AATGTATCG
147524 CTACGAAGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCCATAC
Found at i:147566 original size:21 final size:21
Alignment explanation
Indices: 147540--147581 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
147530 AGCTACTGCC
147540 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
147561 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
147582 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:147586 original size:13 final size:13
Alignment explanation
Indices: 147568--147593 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
147558 ATTAAGGAAA
147568 TGTATCGATACAT
1 TGTATCGATACAT
147581 TGTATCGATACAT
1 TGTATCGATACAT
147594 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:149864 original size:27 final size:28
Alignment explanation
Indices: 149826--149903 Score: 104
Period size: 27 Copynumber: 2.8 Consensus size: 28
149816 CATCAATTTC
*
149826 TCATTGGGGATACTCCAACCCCGTTA-A
1 TCATAGGGGATACTCCAACCCCGTTACA
* *
149853 TCATCGGGGATACTCCAACCCCGTTACC
1 TCATAGGGGATACTCCAACCCCGTTACA
**
149881 TCCGAGGGGATACTCCAACCCCG
1 TCATAGGGGATACTCCAACCCCG
149904 GCTTTATTTC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.23, C:0.36, G:0.21, T:0.21
Consensus pattern (28 bp):
TCATAGGGGATACTCCAACCCCGTTACA
Found at i:149931 original size:103 final size:105
Alignment explanation
Indices: 149752--149954 Score: 293
Period size: 103 Copynumber: 1.9 Consensus size: 105
149742 ACTTTTCACA
* ** * * *
149752 ATCGGGGATATTCCAACCCCGTTATTTCTGAGGGGACACTCCAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGACACTCCAACCCCGGCTTTATTTCCAAAAC
149817 ATCAATTTCTCAT-T-GGGGATACTCCAACCCCGTTAATC
66 ATCAATTTCTCATATCGGGGATACTCCAACCCCGTTAATC
* *
149855 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGACACTCCAACCCCGGCTTTATTTCCAAAAC
**
149920 ATTGATTTCTCATAATCGGGGATACTCCAACCCCG
66 ATCAATTTCTCAT-ATCGGGGATACTCCAACCCCG
149955 ATTTTATTTC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
103 68 0.78
105 1 0.01
106 18 0.21
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (105 bp):
ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGACACTCCAACCCCGGCTTTATTTCCAAAAC
ATCAATTTCTCATATCGGGGATACTCCAACCCCGTTAATC
Found at i:149954 original size:51 final size:51
Alignment explanation
Indices: 149886--150106 Score: 219
Period size: 51 Copynumber: 4.3 Consensus size: 51
149876 TTACCTCCGA
* * * * *
149886 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGA-TTTCTCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTC-CACAATC
* *
149937 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACTAATTTTCCACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTCCACAATC
* * **
149988 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTCC-ACAATC
* * ** * * **
150040 GAGGATACTCCAACTCCAATTTTATTTCTAAAAACACCAATTTTTTACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTC-CAAAACACTAATTTTCCACAATC
**
150092 GATGATACTCCAACC
1 GGGGATACTCCAACC
150107 TCATTATTTC
Statistics
Matches: 142, Mismatches: 25, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
51 80 0.56
52 48 0.34
53 14 0.10
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTCCACAATC
Done.