Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold91
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1327174
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 48727 characters in sequence are not A, C, G, or T
File 8 of 8
Found at i:1250310 original size:33 final size:33
Alignment explanation
Indices: 1250273--1250339 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1250263 TTCAACGATT
1250273 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1250306 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1250339 T
1 T
1250340 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1250311 original size:13 final size:13
Alignment explanation
Indices: 1250293--1250317 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1250283 CATAAAATGT
1250293 TGTATCGATACAA
1 TGTATCGATACAA
1250306 TGTATCGATACA
1 TGTATCGATACA
1250318 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1250398 original size:13 final size:13
Alignment explanation
Indices: 1250380--1250404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1250370 ATTACTCAAA
1250380 TGTATCGATACAT
1 TGTATCGATACAT
1250393 TGTATCGATACA
1 TGTATCGATACA
1250405 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1250468 original size:51 final size:52
Alignment explanation
Indices: 1250413--1250529 Score: 193
Period size: 52 Copynumber: 2.3 Consensus size: 52
1250403 CACTGATCTT
*
1250413 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
*
1250464 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1250516 TGTATCGATACATG
1 TGTATCGATACATG
1250530 TAAGCAACTT
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
51 19 0.31
52 40 0.65
53 3 0.05
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:1252943 original size:16 final size:15
Alignment explanation
Indices: 1252921--1252967 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
1252911 GTTCTTTTCC
1252921 AAAAAAAGAAACAAA
1 AAAAAAAGAAACAAA
**
1252936 ACAAAAAAGATGCAGAA
1 A-AAAAAAGAAACA-AA
1252953 AAAAAAAGAAA-AAA
1 AAAAAAAGAAACAAA
1252967 A
1 A
1252968 GAACAACCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
14 3 0.12
15 2 0.08
16 18 0.69
17 3 0.12
ACGTcount: A:0.81, C:0.06, G:0.11, T:0.02
Consensus pattern (15 bp):
AAAAAAAGAAACAAA
Found at i:1253954 original size:30 final size:31
Alignment explanation
Indices: 1253917--1254001 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 31
1253907 CAAATACCTT
1253917 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* * *
1253948 -TCAAAGTTCACGACTTAGTGGCATTTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* * * *
1253978 TTTAAAGCCCACAACTCTGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
1254002 CACTTTTTCT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 27 0.61
31 17 0.39
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (31 bp):
TTCAAAGTCCACGACTCAGTGGCATTTTGTC
Found at i:1254010 original size:33 final size:34
Alignment explanation
Indices: 1253965--1254376 Score: 396
Period size: 33 Copynumber: 12.4 Consensus size: 34
1253955 TCACGACTTA
*
1253965 GTGGCA-T-TTTTTC-TTTAAAGCCCACAACTCT
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
* **
1253996 GTGGCACACTTTTTCTTTTTAAAGCCCACAACTTT
1 GTGGCACTCTTTTTC-TTTTAAAGCCCACAACTCC
1254031 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCC
1 GTGGCACTCTTTTT--CTTTT-AAAGCCCACAACTCC
*
1254068 GTGGCAC-CTTTTTCTTTTTACAGCCCACAACTCC
1 GTGGCACTCTTTTTC-TTTTAAAGCCCACAACTCC
1254102 GTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCC
1 GTGGCACTCTTTTT--CTT-TTAAAGCCCACAACTCC
* *
1254139 GTGGCAC-C-TTAT-TTTCAAAGCCCACAACTCC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
* ** *
1254170 GTGGCAC-C-----CTTTT-AAGTCCATGACTAC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
* *
1254197 GTGGCACTC-TTTTCCTTTAAAGCCCACAACTAC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
*
1254230 GTGGCACTC-TTTTCATTCT-AAGCCCACAACTCC
1 GTGGCACTCTTTTTC-TTTTAAAGCCCACAACTCC
* *
1254263 GTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCT
1 GTGGCACTCTTTTT-CTTTTAAAGCCCACAACTCC
1254297 GTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCC
1 GTGGCACTCTTTTT--CTTTTAAAGCCCACAACTCC
* * * *
1254333 GTGGCAC-CTTGTTCTTTTTAAGTCCACAACTTC
1 GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
1254366 GTGGCA-TCTTT
1 GTGGCACTCTTT
1254377 CACCCTTTTT
Statistics
Matches: 327, Mismatches: 29, Indels: 48
0.81 0.07 0.12
Matches are distributed among these distances:
27 17 0.05
28 4 0.01
31 30 0.09
32 6 0.02
33 79 0.24
34 59 0.18
35 54 0.17
36 33 0.10
37 45 0.14
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (34 bp):
GTGGCACTCTTTTTCTTTTAAAGCCCACAACTCC
Found at i:1254093 original size:34 final size:34
Alignment explanation
Indices: 1253978--1254396 Score: 366
Period size: 34 Copynumber: 12.4 Consensus size: 34
1253968 GCATTTTTTC
*
1253978 TTTAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
**
1254013 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTT
*
1254050 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
1254084 TTTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTT
* *
1254121 GTTAAAGCCCACAACTCCGTGGCACC---TTATT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
1254152 TTCAAAGCCCACAACTCCGTGGCACC-----C-T
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* ** * *
1254180 TTT-AAGTCCATGACTACGTGGCA-CTCTTTTC-C
1 TTTAAAGCCCACAACTCCGTGGCACCT-TTTTCTT
* *
1254212 TTTAAAGCCCACAACTACGTGGCA-CTCTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCT-TTTTCTT
* *
1254246 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
* * *
1254280 TCT-AAGCCCACAACTCTGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTT
*
1254315 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * * **
1254349 TTT-AAGTCCACAACTTCGTGGCATCTTTCACCCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT--TTCTT
1254384 TTTAAAGCCCACA
1 TTTAAAGCCCACA
1254397 CAAGTCGGTG
Statistics
Matches: 326, Mismatches: 38, Indels: 39
0.81 0.09 0.10
Matches are distributed among these distances:
26 1 0.00
27 16 0.05
28 3 0.01
31 26 0.08
32 4 0.01
33 67 0.21
34 69 0.21
35 54 0.17
36 35 0.11
37 51 0.16
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
Found at i:1254098 original size:71 final size:70
Alignment explanation
Indices: 1253978--1254396 Score: 446
Period size: 71 Copynumber: 6.2 Consensus size: 70
1253968 GCATTTTTTC
* **
1253978 TTTAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTTTGTGGCACTCTTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1254043 TTCCCT
65 TTCCCT
*
1254049 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTACAGCCCACAACTCCGTGGCACTCTTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1254114 TTCCCT
65 TTCCCT
* *
1254120 TGTTAAAGCCCACAACTCCGTGGCACC---TTATTTTCAAAGCCCACAACTCCGTGGCA------
1 T-TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1254176 --CCCT
65 TTCCCT
* ** * * *
1254180 TTT-AAGTCCATGACTACGTGGCA-CTCTTTTC-CTTTAAAGCCCACAACTACGTGGCACTC-TT
1 TTTAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
*
1254241 TT-CAT
65 TTCCCT
* * * *
1254246 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCTGTGGCACTCTTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1254309 TTCCCT
65 TTCCCT
* * * *
1254315 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCTTTTT-AAGTCCACAACTTCGTGGCA-TCTTTC
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
*
1254378 ACCCTT
66 TCCC-T
1254384 TTTAAAGCCCACA
1 TTTAAAGCCCACA
1254397 CAAGTCGGTG
Statistics
Matches: 293, Mismatches: 35, Indels: 42
0.79 0.09 0.11
Matches are distributed among these distances:
57 1 0.00
58 16 0.05
59 2 0.01
60 27 0.09
61 2 0.01
66 20 0.07
67 26 0.09
68 42 0.14
69 44 0.15
70 21 0.07
71 69 0.24
72 23 0.08
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (70 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
TCCCT
Found at i:1254389 original size:69 final size:70
Alignment explanation
Indices: 1254174--1254396 Score: 225
Period size: 69 Copynumber: 3.3 Consensus size: 70
1254164 AACTCCGTGG
* ** *
1254174 CACCCTTTT-AAGTCCATGACTACGTGGCACTCTT-TTCCTT-TAAAGCCCACAACTAC-GTGGC
1 CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCT-AAGCCCACAACT-CTGTGGC
1254235 ACTCTTTT
64 ACTC-TTT
* *
1254243 CA---TTCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCTGTGGCAC
1 CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCTGTGGCAC
1254304 TCTTT
66 TCTTT
** * * *
1254309 TTCCCTTTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTTTTTAAGTCCACAACT-TCGTGGCA
1 CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCT-GTGGCA
1254372 -TCTTT
65 CTCTTT
1254377 CACCCTTTTTAAAGCCCACA
1 CACCC-TTTTAAAGCCCACA
1254397 CAAGTCGGTG
Statistics
Matches: 131, Mismatches: 14, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
66 28 0.21
67 27 0.21
68 10 0.08
69 45 0.34
70 21 0.16
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (70 bp):
CACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTCTAAGCCCACAACTCTGTGGCAC
TCTTT
Found at i:1254428 original size:33 final size:33
Alignment explanation
Indices: 1254386--1254615 Score: 333
Period size: 33 Copynumber: 7.0 Consensus size: 33
1254376 TCACCCTTTT
1254386 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC
1254419 TAAAGCCCACACAAGTCGGTGGCAAACCCTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAAA-CCTTCTC
1254453 TAAAGCCCACACAAGTCGGTGGC-AACCTTCCTC
1 TAAAGCCCACACAAGTCGGTGGCAAACCTT-CTC
* *
1254486 TAAAGCCCACACAAGTTGGTGGCAATCCCTTC-C
1 TAAAGCCCACACAAGTCGGTGGCAA-ACCTTCTC
* *
1254519 CAAAGCCCACACAAGTCGGTGGCAACCCTTC-C
1 TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC
* *
1254551 CAAAGCCCACACAAGTTGGTGGC-AACCATTCTC
1 TAAAGCCCACACAAGTCGGTGGCAAACC-TTCTC
*
1254584 TAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 TAAAGCCCACACAAGTCGGTGGCAAACCTTCT
1254616 AAGCCCAATA
Statistics
Matches: 181, Mismatches: 9, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
31 3 0.02
32 36 0.20
33 103 0.57
34 35 0.19
35 4 0.02
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (33 bp):
TAAAGCCCACACAAGTCGGTGGCAAACCTTCTC
Found at i:1254470 original size:67 final size:67
Alignment explanation
Indices: 1254378--1254615 Score: 360
Period size: 67 Copynumber: 3.6 Consensus size: 67
1254368 GGCATCTTTC
* *
1254378 ACCCTT-TTTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTCGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
1254442 AA
66 AA
1254444 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGC-AACCTTCCTCTAAAGCCCACACAAGTTGGTGG
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTT-CTCTAAAGCCCACACAAGTTGGTGG
1254508 CAA
65 CAA
* * * *
1254511 TCCCTTC-CCAAAGCCCACACAAGTCGGTGGCAACCCTTC-CCAAAGCCCACACAAGTTGGTGGC
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
1254574 -A
66 AA
* *
1254575 ACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCT
1254616 AAGCCCAATA
Statistics
Matches: 158, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
64 6 0.04
65 54 0.34
66 36 0.23
67 62 0.39
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (67 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAACCTTCTCTAAAGCCCACACAAGTTGGTGGC
AA
Found at i:1254673 original size:49 final size:48
Alignment explanation
Indices: 1254615--1255609 Score: 1257
Period size: 49 Copynumber: 20.8 Consensus size: 48
1254605 GCAACCCTTC
* * * *
1254615 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
*
1254664 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
*
1254712 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
*
1254761 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
1254809 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
** * *
1254852 TAAGTCCAACATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T-CATCTT
* * *
1254904 TAAGTTCAATGTAGCTGGCCTTGACTCAGCACATTGACATCCTTTTTCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--C-----C-TCATCTT
* * * *
1254960 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTT
1255009 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
* * * *
1255052 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTT
1255101 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
* * * *
1255144 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTT
1255193 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
* * * * *
1255236 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC-ACCTCATCTT
*
1255285 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
1255334 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
*
1255382 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
*
1255431 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
1255479 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
* * *
1255522 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T-CATCTT
*
1255574 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
1255610 ACATCCTTTT
Statistics
Matches: 837, Mismatches: 63, Indels: 89
0.85 0.06 0.09
Matches are distributed among these distances:
43 193 0.23
45 5 0.01
47 3 0.00
48 184 0.22
49 337 0.40
50 2 0.00
52 70 0.08
54 1 0.00
55 1 0.00
56 39 0.05
57 1 0.00
59 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
Found at i:1254894 original size:21 final size:21
Alignment explanation
Indices: 1254827--1254894 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
1254817 ATGTAGCTGG
* *
1254827 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCATATCGGCA
* * *
1254848 CCTTTAAGTCCAACATAGCTGG--
1 CCTTGAA-T-CAGCATATC-GGCA
1254870 CCTTGAATCAGCATATCGGCA
1 CCTTGAATCAGCATATCGGCA
1254891 CCTT
1 CCTT
1254895 TTCCATCTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 2 0.06
20 7 0.21
21 11 0.32
22 7 0.21
23 5 0.15
24 2 0.06
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (21 bp):
CCTTGAATCAGCATATCGGCA
Found at i:1255114 original size:92 final size:92
Alignment explanation
Indices: 1254957--1255618 Score: 986
Period size: 92 Copynumber: 7.0 Consensus size: 92
1254947 TTTTCATCAT
* *
1254957 CTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1255022 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
1255049 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1255114 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
1255141 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1255206 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
1255233 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCATCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
1255298 GCTGGCCTTGACTCAGCACATTGGCACCTTC
66 GCTGGCCTTGAATCAGCACATTGGCA----C
* * *
1255329 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
*
1255393 TAGCTGGCCTTGACTCAGCACATTGGCACCTTC
64 TAGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
1255426 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCACCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1255490 TAGCTGGCCTTGAATCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
1255519 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAAT
*
1255584 GTAGCTGGCCTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
1255615 CTTT
1 CTTT
1255619 TTCATCATCT
Statistics
Matches: 538, Mismatches: 21, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
91 39 0.07
92 269 0.50
93 1 0.00
94 1 0.00
95 42 0.08
96 6 0.01
97 142 0.26
98 38 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:1256474 original size:33 final size:33
Alignment explanation
Indices: 1256437--1256503 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1256427 TTCAACGATT
1256437 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1256470 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1256503 T
1 T
1256504 TTAATTACAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1256475 original size:13 final size:13
Alignment explanation
Indices: 1256457--1256481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1256447 CATAAAATGT
1256457 TGTATCGATACAA
1 TGTATCGATACAA
1256470 TGTATCGATACA
1 TGTATCGATACA
1256482 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1264001 original size:159 final size:159
Alignment explanation
Indices: 1263778--1264477 Score: 425
Period size: 159 Copynumber: 4.4 Consensus size: 159
1263768 TTCCTTAAAG
* * * * * * *
1263778 TCAAAGTTCAT-CCTACAAATAAGACAATCATCG-ATCCTCATAACAGTCTCCATTATTTTCAGG
1 TCAAAGTTCATCCCT-TAAATAAGACAAACAT-GAATACTCATAACAATCCCCATTCTTTTTAGG
*
1263841 ATTGGGAACCTA-AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAG
64 ATTGAGAACCTATAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAG
1263905 AAAAGCTTTTCTTTCTACC-ATTTTTGACAGAA
129 AAAAGCTTTTCTTTCTACCAATTTTTGA-A-AA
* * *
1263937 TCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCTATTCTTTTTAGGAT
1 TCAAAGTTCATCCCTTAAATAAGACAAACATGAATACTCATAACAATCCCCATTCTTTTTAGGAT
* * * * * * * *
1264002 T-AGACACC-ATAAACATAGT-CTTCTCTTTAGGATACATGATATTGATGTTTTGGTTTCGCAAG
66 TGAGA-ACCTATAAACACATTCCCT-TCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAG
* * * *
1264064 -AAAGGTATTT-TTTCCACCAAATTTTGTAAAG
129 AAAAGCT-TTTCTTTCTACCAATTTTTG-AAAA
* * * * * * * * ** *
1264095 TCTAAGTTC-GCGCCTCAAATGAGACAAACAAGGATTCT-AGTAACGATCTTCATTCATTTT-GT
1 TCAAAGTTCATC-CCTTAAATAAGACAAACATGAATACTCA-TAACAATCCCCATTCTTTTTAG-
* * * * * * ** * *
1264157 GATTAAGCA-CTATAAACACATTCTCTTCAGTAGGATAA-ATGATATTGATGATTTTCTTTTGCA
63 GATTGAGAACCTATAAACACATTCCCTTCATTAGGA-AACATGACATTGATGCTTTGGTGTCGCA
* * * *
1264220 TGAAAATCTTTTCTTTGC--CCTATTTTCCTTAAAA
127 AGAAAAGCTTTTCTTT-CTACCAATTTT--TGAAAA
* * * * * * * * **
1264254 TCAAAGTTCATCCCTTAAATAAGACTAGC-TTAGATTCTCAAAATAGTCCCCATTATTTTCCGGA
1 TCAAAGTTCATCCCTTAAATAAGACAAACATGA-ATACTCATAACAATCCCCATTCTTTTTAGGA
* * * * * *
1264318 TTGGGAACCTA-AAACACATTTCCTTCATTAGGATACATGACATTGAGGCTTTGGAGTCGCAAGG
65 TTGAGAACCTATAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGA
* *
1264382 GAAG-TTTTCTTTCTACC-GTTTTTGATAGAA
130 AAAGCTTTTCTTTCTACCAATTTTTGA-A-AA
* ** * * *
1264412 TGAAAGTTTTTTCTCTTAAATGAGACAAACATGAATAGTCAT-ACTAATCCCCATTCTTTTTAGG
1 TCAAAG-TTCATCCCTTAAATAAGACAAACATGAATACTCATAAC-AATCCCCATTCTTTTTAGG
1264476 AT
64 AT
1264478 GAGGCACAAT
Statistics
Matches: 397, Mismatches: 111, Indels: 66
0.69 0.19 0.11
Matches are distributed among these distances:
156 2 0.01
157 6 0.02
158 134 0.34
159 242 0.61
160 13 0.03
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (159 bp):
TCAAAGTTCATCCCTTAAATAAGACAAACATGAATACTCATAACAATCCCCATTCTTTTTAGGAT
TGAGAACCTATAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAA
AAGCTTTTCTTTCTACCAATTTTTGAAAA
Found at i:1264559 original size:476 final size:474
Alignment explanation
Indices: 1263663--1266095 Score: 2879
Period size: 476 Copynumber: 5.1 Consensus size: 474
1263653 TACAAGGAAT
* * * *
1263663 GATCTTCATTCATTTTATGATTAGGGACTACAAACACATTCTCTTCAATAGGATAAAT-ATTATT
1 GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCTTCAATAGGATAAATGA-TATT
* * * * *
1263727 GATGATTTTATTTCGCACGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAGTCAAAGTTCAT-CC
65 GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * *
1263791 TACAAATAAGACAATCATCGATCCTCATAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAA
130 T-TAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAA
* *
1263856 CACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCT
194 CACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC-
* ** *
1263921 ACCATTTTTGACAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATACCAATCC
258 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCC
* * * * *
1263986 CTATTCTTTTTAGGATTAGACACCATAAACATAGTCTTCTCTTTAGGATACATGATATTGATGTT
323 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
* * * *
1264051 TTGGTTTCGCAAGAAAGGTATTTTTTCCACCAAATTTTGTAAAGTCTAAGTTCGCGCCTCAAATG
388 TTGGTTTCACAAGAAAGGT-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
*
1264116 AGACAAACAAGGATTCTAGTAAC
452 AGACAAACATGGATTCTAGTAAC
*
1264139 GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCTTCAGTAGGATAAATGATATTG
1 GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCTTCAATAGGATAAATGATATTG
1264204 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
66 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * * *
1264269 TAAATAAGACTAGCTTAGATTCTCAAAATAGTCCCCATTATTTTCCGGATTGGGAACCTAAAACA
131 TAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACA
* * **
1264334 CATTTCCTTCATTAGGATACATGACATTGAGGCTTTGGAGTCGCAAGGGAAG-TTTTCTTTCTAC
196 CATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC-AC
* * * * *
1264398 CGTTTTTGATAGAATGAAAGTTTTTTCTCTTAAATGAGACAAACATGAATAGTCATACTAATCCC
260 CATTTTTGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCC
* * * * *
1264463 CATTCTTTTTAGGATGAGGCACAATAAGCATAGTTTTCTCATAAGGATACACGATATTGATGCTT
324 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
*** * *
1264528 TGGTTTCATGTGAAAGGGTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATGA
389 TGGTTTCACAAGAAA-GGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* *
1264593 GACAAACGTGGATTCTAGTAAT
453 GACAAACATGGATTCTAGTAAC
* * * *
1264615 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT-TGCTTCATTAGAATAGATGATATT
1 GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCT-CTTCAATAGGATAAATGATATT
* * * * *
1264679 GATGATTTTCTTTCGAATTG-AAATCTTTTCTTTGCCCTACTTTCCATAAAATCAAAGTTTATCC
65 GATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * * ** * *
1264743 CTTAAATAATACAAGAATCGATTCTCATAACAATCTCCATTCCTTCCCA-TATTAGGAACC-ATA
129 CTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATT-ATTTTCAGGATTGGGAACCTA-A
* * * *
1264806 AACACA-TTCCTTTCATTAGGATACATGACATTAATGCTTTGGTGTCACAAGAAAAGGTTTTTTT
192 AACACATTTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * ** *
1264870 TCCCCAATTTTTGATAGAATCAAAGTTTGTCTCTTATATGAGACAAAGAAAAATAGTCATACGAA
256 TCACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAA
* * * * * *
1264935 TGCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAACGATACATGATATTGCT
320 TCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
* * * * * *
1265000 GCTTTGGTTTCATAAGAATGGTTTTTTTCTCACCAATTTTTGTTAAGTCCAAGTTCATGCCTCAA
385 GCTTTGGTTTCACAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* *
1265065 ATGAGATAAACATGGATTCTAGTAAT
449 ATGAGACAAACATGGATTCTAGTAAC
* * * * *
1265091 GATCTT--TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAACAAGATAAAT-AGTATT
1 GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCTTCAATAGGATAAATGA-TATT
* ** * * *
1265153 GATGATTTTCTTTTGTATGAAAATCTTTTCTTCACCTTATTTTCCTTGAAGTCAAAGTTCATCCC
65 GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* ** ** **** * * * *
1265218 ATAAATAAGTTAAGCATCGACCCTTGTCACAATCTCCATTATTTTCAAGATTAGGAACCAAAAAC
130 TTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAAC
* *
1265283 ACA-TTCCTTTCATTAGAATACATGACATTGATGCTTTGGTATCGCAA-AAAGAGCTTTTCTTTC
195 ACATTTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-AGCTTTTCTTT-
* * * * * *
1265346 CATCATTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACTAGCTTGAATAGTCATACTAATC
257 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATC
* * * ** *
1265411 ACCATTCTTTTT-GGCACTAGGCACCA-AAA-ATAGTCTTCTCATTATGATATGCAATATTGATG
322 CCCATTCTTTTTAGG-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG
* * ** ** * * ** *
1265473 TTTTGGCTTT-ACAAGAAAAGCATTTTCCCACCAATTTTCATGAAGTCTAAGTTCTTAACTCAGA
386 CTTTGG-TTTCACAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
1265537 TGAGACAAACGTGGATTCTAATAGC
450 TGAGACAAACATGGATTCTAGTAAC
* * *
1265562 AATCTTCATTCATTTTGTAATTAAGCACTAT-AACACATTCTCCTCAATAGGATAAATGATATTG
1 GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCTTCAATAGGATAAATGATATTG
* * * * * *
1265626 ATGATTTTCTTTTACTTAAAAAACTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCTT
66 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * *
1265691 TAAATAACACAAGCATCGATTCTTAAAATAGTCTCCATTATTTTCTGGATTGGGAACCTAAAACA
131 TAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACA
* ** *
1265756 CATTTCCTTCATTAGGATACATGACATTGATGCTTTAGTGTCAAAAGAAAAGCTTTTCTTTGCAT
196 CATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CAC
* * * *
1265821 CGTTTTTGATAGAATCAAAGTCTGTCTCTTAAATAAGATAAATAATGAATAGTCATACCAATCCC
260 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CATGAATAGTCATACCAATCCC
* * ** *
1265886 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATATGCGATATTGATGGTT
324 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* *
1265951 TGGATTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
389 TGGTTTCACAAGAAAGGT-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
1266016 GACAAACATGGATTCTAGTAAC
453 GACAAACATGGATTCTAGTAAC
* *
1266038 AATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCT-TCTCAATAAGATAAAT
1 GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCT-TCAATAGGATAAAT
1266096 ATTAACAATC
Statistics
Matches: 1654, Mismatches: 269, Indels: 67
0.83 0.14 0.03
Matches are distributed among these distances:
471 58 0.04
472 256 0.15
473 83 0.05
474 270 0.16
475 84 0.05
476 843 0.51
477 60 0.04
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (474 bp):
GATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCTTCAATAGGATAAATGATATTG
ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
TAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACA
CATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCACC
ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCA
TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
GTTTCACAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
AAACATGGATTCTAGTAAC
Found at i:1266525 original size:99 final size:99
Alignment explanation
Indices: 1266340--1266532 Score: 269
Period size: 99 Copynumber: 1.9 Consensus size: 99
1266330 TAGGATCCAA
* *
1266340 AAACACATTCCCGTCATTAGGATACATGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTCAT
1 AAACACATTCCCGTCATTAGGATACATGACATTGATGCTTTGGAGCCACAAGAAAAGCTTTTCAT
*
1266405 TCCACCATTTCTAATAAAATCAAAGTTTGCCTTT
66 TCCACCATTTCTAAGAAAATCAAAGTTTGCCTTT
* ** * **
1266439 AAACACATTCCCTTTGTTAGGATACATGACATTGATGCTTTGGAGCCATAAGAAAAGCTTTTGTT
1 AAACACATTCCCGTCATTAGGATACATGACATTGATGCTTTGGAGCCACAAGAAAAGCTTTTCAT
* ** *
1266504 TCCACCATTTTTGGGAGAATCAAAGTTTG
66 TCCACCATTTCTAAGAAAATCAAAGTTTG
1266533 TTTCTTAAAT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
99 81 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (99 bp):
AAACACATTCCCGTCATTAGGATACATGACATTGATGCTTTGGAGCCACAAGAAAAGCTTTTCAT
TCCACCATTTCTAAGAAAATCAAAGTTTGCCTTT
Found at i:1274316 original size:476 final size:475
Alignment explanation
Indices: 1272782--1274841 Score: 2362
Period size: 476 Copynumber: 4.3 Consensus size: 475
1272772 TTCACTACTC
* * * *
1272782 TTATTTTTAGGATTGGGAACCTAAAACACATTCCTTTCAATAAGATACATGACATTGAGGCTTTG
1 TTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTG
* * * *
1272847 GTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAAGCAAAATTTTTCTCTTAAATAAG
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
* *
1272912 ATAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
131 ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * ** *
1272977 CCATAAGGATACATGATATTGAAGCTTTGGTTTC-AAATGAAAGGGTTTTTTCCCACCATTTTTT
196 ACATAA-GATACATGATATTGATGCTTTGGTTTCGCAA-GAAAGGCATTTTTCCCACCAATTTTT
* * * ***
1273041 GTAAAATCTACA-TTCGTGCCTCAAATGAAACATTTAT-GAGTTCTAGTAATGATCTTCATTCAT
259 ATAAAGTCTA-AGTTCATGCCTCAAATGAAACAAACATGGA-TTCTAGTAATGA---T-ATTCAT
* * * * * *
1273104 TCATTTTTTTATTAGGCACTATAAACATATTCTCCTCATTAGGAAAAATGATATTGATGATTTTC
318 TCATTTTATGATTAAGCACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTC
**
1273169 TTTTGCAT-GAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
383 TTTCACATAG-AAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * *
1273233 ACAAGAATCGGTTCTTGTAACAATCTCCA
447 ACAAGCATCGATTCTCGTAACAATCTCCA
** * * *
1273262 TTCCATCCT-A-GATTGGGAACCAAAAACACATTTCC-TTCATTAGGATACTTGAAATTGATGCT
1 TT--ATTTTCAGGATTGGGAACCTAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCT
* ** * * * * *
1273324 TTGGTGTCGCAAGAAAAGGTTTTCACTCCACCGTTTCTAATAAAATCAAAGTTTACCTCTTAAAC
63 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
* * * *
1273389 ATGACAAACATGAATAGTCATACTAATCCCCTTTATTTTTAGGATTAGGCACCATAAACATAGTC
128 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
1273454 TTCTCATAAGTATACAAGATATTGGTGCTTTGGTTTCACAAGAAAGG-TTATTTTCCCACCAA-T
193 TTCACATAAG-ATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCAT-TTTTCCCACCAATT
* * ** * * * *
1273517 TTTAGTAAACTCTAACTTTGTGCCAT-AAATAAAATAAACATGGATTCTCA-TAGTGATCTTCAT
256 TTTA-TAAAGTCTAAGTTCATGCC-TCAAATGAAACAAACATGGATTCT-AGTAATGATATTCAT
* * * * * *
1273580 TCATTTTATTACTAGGCATTATAAACACATTCTCCTTAGTAGGATAAATGATATTGACGATTTTT
318 TCATTTTATGATTAAGCACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGA--TTT
* * *
1273645 TTTTTGCAC-GA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
381 TCTTT-CACATAGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
** *
1273708 AGACAAGCATCGATTCTCAAAACAGTCTCCA
445 AGACAAGCATCGATTCTCGTAACAATCTCCA
* * * *
1273739 TTATTTTCAGGATTGGGAACCCAAAACAGATTCCCTTCAATA-GAGTACATGACATTGATGCTTT
1 TTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGA-TACATGACATTGATGCTTT
* * *
1273803 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAA
65 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * * * * *
1273868 GACAAACATGAATAGTCATACTAATCACCATTCTTTTCGGGACTGGGCCCCATAAACATAGTTTT
130 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
**
1273933 CACATTAAGATATGTGATATTGATG-TTTAGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTT
195 CACA-TAAGATACATGATATTGATGCTTT-GGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTT
* * * * * * * *
1273997 TATGATGTCTAGGTTCATGCCTTAAATGAGACAAATATGGATTCTAGTAATTATATTCTTTCATT
258 TATAAAGTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATATTCATTCATT
* * *
1274062 TTATGATTAAGTACTATAAACACATTCTGCTCAATAGGATAAAT-ATTATTGATGATTTTCTTTC
323 TTATGATTAAGCACTATAAACACATTCTCCTCAGTAGGATAAATGA-TATTGATGATTTTCTTTC
* * * * *
1274126 ACATAGAAATCTATTCCTTGCCCTATTTTCCTTAAAGTCAAAGTTCATCCCATAAATAAGACAAG
387 ACATAGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* *
1274191 CATCGATCCTCGTAACAATCTCCG
452 CATCGATTCTCGTAACAATCTCCA
* * *
1274215 TTATTTTCAGGATTGGGAACCTAAAATACATTCCTTTCGTTAGGATACATGACATTAATGCTTTG
1 TTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTG
* * *
1274280 GTGTCGCAAAAAAAGCTTTT-TTTCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
66 GTGTCGCAAGAAAAGCTTTTCTTT-CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * * * *
1274344 GACAACCAAGAATACTCATACCAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
130 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * ** * * * ** *
1274409 -ATCTTTAGGATACGCGGTATTGATGTTTTGGTTTCGCAAGAATGGCATTTTTTGCTCCAATTTT
195 CA-C-ATAAGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTT
* * * *
1274473 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATT
258 TATAAAGTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATATTCATTCATT
** * * * **
1274538 TCGTGATTAAGCACTATAAACACATTCTCCTTAGTCGGATAAAAGATATTGATGATTTTCTTTTG
323 TTATGATTAAGCACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTCA
* * *
1274603 CATGGAAATCTTTTTTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGC
388 CATAGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
*
1274668 ATCGATTCT--TAAAATAGTCTCCA
453 ATCGATTCTCGTAACA-A-TCTCCA
*
1274691 TTATTTTCAGGATTGGGAACCTAAAACACATT-TTCTTCATTAGGATACATGACATTGATGCTTT
1 TTATTTTCAGGATTGGGAACCTAAAACACATTCCT-TTCATTAGGATACATGACATTGATGCTTT
* * * *
1274755 CGTGTCGTAAGAAAAGCTTTTCTTTGCATCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
65 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
1274820 GACAAACATGAATAGTCATACT
130 GACAAACATGAATAGTCATACT
1274842 GTTAGGATCT
Statistics
Matches: 1336, Mismatches: 206, Indels: 80
0.82 0.13 0.05
Matches are distributed among these distances:
474 7 0.01
475 17 0.01
476 667 0.50
477 368 0.28
478 17 0.01
479 9 0.01
480 237 0.18
481 11 0.01
482 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
TTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTG
GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
ACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
ACATAAGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTAT
AAAGTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATATTCATTCATTTTA
TGATTAAGCACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTCACAT
AGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
GATTCTCGTAACAATCTCCA
Found at i:1275281 original size:33 final size:32
Alignment explanation
Indices: 1275244--1275308 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
1275234 TACCACTGTT
1275244 TGTATCGATACATG-GCACATTGTATCGATACAA
1 TGTATCGATACATGAG-A-ATTGTATCGATACAA
1275277 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCGATACATGA-GAATTGTATCGATACA
1275309 TTGCTTCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAA
Found at i:1275282 original size:13 final size:13
Alignment explanation
Indices: 1275264--1275288 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1275254 CATGGCACAT
1275264 TGTATCGATACAA
1 TGTATCGATACAA
1275277 TGTATCGATACA
1 TGTATCGATACA
1275289 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1276324 original size:365 final size:365
Alignment explanation
Indices: 1275654--1276386 Score: 1439
Period size: 365 Copynumber: 2.0 Consensus size: 365
1275644 CAAACACTAG
1275654 CCTACTTAGAGGCAATTCTTGTTTGTATAATTTTTTTGTTTACATAAGATTGTGTTCAACCTTGA
1 CCTACTTAGAGGCAATTCTTGTTTGTATAATTTTTTTGTTTACATAAGATTGTGTTCAACCTTGA
1275719 GTCATAATCTCCTAGGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
66 GTCATAATCTCCTAGGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
*
1275784 TTCAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
131 TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
1275849 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
196 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
1275914 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
261 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
1275979 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
326 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
*
1276019 CCTACTTAGAGGCAATTCTTGTTTGTATAATTTTTTTGTTTACATAAGGTTGTGTTCAACCTTGA
1 CCTACTTAGAGGCAATTCTTGTTTGTATAATTTTTTTGTTTACATAAGATTGTGTTCAACCTTGA
1276084 GTCATAATCTCCTAGGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
66 GTCATAATCTCCTAGGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
1276149 TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
131 TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
*
1276214 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACTAGATTGGATCAAACCTCT
196 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
1276279 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
261 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
1276344 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
326 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
1276384 CCT
1 CCT
1276387 CTCGGTTTAT
Statistics
Matches: 365, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
365 365 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (365 bp):
CCTACTTAGAGGCAATTCTTGTTTGTATAATTTTTTTGTTTACATAAGATTGTGTTCAACCTTGA
GTCATAATCTCCTAGGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
Found at i:1281649 original size:52 final size:51
Alignment explanation
Indices: 1281571--1281719 Score: 226
Period size: 52 Copynumber: 2.9 Consensus size: 51
1281561 CGAAATATGA
*
1281571 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
1281623 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
1281675 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
1281720 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.95
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:1281726 original size:13 final size:13
Alignment explanation
Indices: 1281708--1281732 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1281698 CAAAGATCAG
1281708 TGTATCGATACAA
1 TGTATCGATACAA
1281721 TGTATCGATACA
1 TGTATCGATACA
1281733 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1281814 original size:33 final size:33
Alignment explanation
Indices: 1281777--1281839 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
1281767 GCTTAAATTG
1281777 TATCGATACAAAAAAATATGTATCGATACATTA
1 TATCGATACAAAAAAATATGTATCGATACATTA
* ***
1281810 TATCGATACAACACTTTATGTATCGATACA
1 TATCGATACAAAAAAATATGTATCGATACA
1281840 AATCGTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (33 bp):
TATCGATACAAAAAAATATGTATCGATACATTA
Found at i:1282886 original size:49 final size:49
Alignment explanation
Indices: 1282800--1282944 Score: 204
Period size: 49 Copynumber: 3.0 Consensus size: 49
1282790 TATTGGACTT
* * * *
1282800 AAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAATATG-
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-AGGC
* *
1282849 AAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT-AAAGGC
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGGC
*
1282897 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAAAGG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGG
1282945 AGACGCCACC
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
47 2 0.02
48 41 0.48
49 42 0.49
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAAGGC
Found at i:1282916 original size:48 final size:47
Alignment explanation
Indices: 1282714--1282941 Score: 252
Period size: 48 Copynumber: 4.8 Consensus size: 47
1282704 AAAAGGATGT
* * *
1282714 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-GG--AAGGTGC
1282766 CAA-ATGCTGATTCAAGGCCAGCTATATTGGACTT-----AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGAAGGTGC
* * * *
1282807 CAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAATATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-AGGAAGGTGC
* *
1282856 CAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGGCAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGG-AAGGTGC
*
1282904 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1282942 AGGAGACGCC
Statistics
Matches: 152, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
41 10 0.07
42 28 0.18
47 2 0.01
48 44 0.29
49 37 0.24
51 28 0.18
52 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (47 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGAAGGTGC
Found at i:1282934 original size:97 final size:92
Alignment explanation
Indices: 1282714--1282941 Score: 298
Period size: 97 Copynumber: 2.4 Consensus size: 92
1282704 AAAAGGATGT
*
1282714 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAATGCTGATTC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGG-AAAGGTGCCAAATGCTGATTC
*
1282779 AAGGCCAGCTATATTGGACTTAAGGTGC
65 AAGGCCAGCGATATTGGACTTAAGGTGC
* * *
1282807 CAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAATAT-G-AAGGTGCCAATATGCTGATTT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAGGTGCCAA-ATGCTGATTC
1282870 AAGGCCAGCGATATTGGACTTAAAGGCAAGGTGC
65 AAGGCCAGCGATATTGGACTT------AAGGTGC
* * *
1282904 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
1282942 AGGAGACGCC
Statistics
Matches: 119, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
90 10 0.08
91 29 0.24
92 1 0.01
93 38 0.32
97 41 0.34
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (92 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAGGTGCCAAATGCTGATTCA
AGGCCAGCGATATTGGACTTAAGGTGC
Found at i:1283044 original size:30 final size:30
Alignment explanation
Indices: 1282987--1283304 Score: 303
Period size: 30 Copynumber: 10.7 Consensus size: 30
1282977 GTTTGCATCC
*
1282987 CTGACTTGTGGGCTTTT--AAAGGTTGCCA
1 CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
1283015 CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
1 CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
*
1283045 CTAACTTGTGGGCTTTTGAAAAGGGTGCCA
1 CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
*
1283075 CTAACTTGTGGGCTTTTGAAAAGGGTGCCA
1 CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
* ** * *
1283105 CTAACTTGTGGGCTTAAAAAGAAAAAGAGTGCTA
1 CTGACTTGTGGGCTT---TTG-AAAAGGGTGCCA
* * * *
1283139 -TAGAGTTGTGAGCTTTGGAAAA-GATGCCA
1 CT-GACTTGTGGGCTTTTGAAAAGGGTGCCA
* *
1283168 CCGACTTGTGGGC-TTCGAAAAAGGGTGCCA
1 CTGACTTGTGGGCTTTTG-AAAAGGGTGCCA
* *
1283198 CTGATTTGTGGGC-TTTG--AAGGTTGCCA
1 CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
***
1283225 CTGACTTGTGGGCTTTTGAAAAAAAATGCCA
1 CTGACTTGTGGGCTTTTG-AAAAGGGTGCCA
***
1283256 CTGACTTGTGGGC-TTTGAAAAATATGCCA
1 CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
*
1283285 CTGACTTGTGGACTTTTGAA
1 CTGACTTGTGGGCTTTTGAA
1283305 GGGTGATAAA
Statistics
Matches: 246, Mismatches: 29, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
27 21 0.09
28 24 0.10
29 40 0.16
30 118 0.48
31 21 0.09
33 2 0.01
34 20 0.08
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (30 bp):
CTGACTTGTGGGCTTTTGAAAAGGGTGCCA
Found at i:1283247 original size:123 final size:123
Alignment explanation
Indices: 1283020--1283239 Score: 304
Period size: 123 Copynumber: 1.8 Consensus size: 123
1283010 TGCCACTGAC
* * * * *
1283020 TTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTG
1 TTGTGAGCTTTGGAAAAGGATGCCACCAACTTGTGGGCTTTCGAAAAGGGTGCCACTAACTTGTG
1283085 GGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCTTAAAAAGAAAAAGAGTGCTATAGAG
66 GGCTTTTG-AAAGGGTGCCACTAACTTGTGGGCTTAAAAAGAAAAAGAGTGCTATAGAG
* * *
1283144 TTGTGAGCTTTGGAAAA-GATGCCACCGACTTGTGGGC-TTCGAAAAAGGGTGCCACTGATTTGT
1 TTGTGAGCTTTGGAAAAGGATGCCACCAACTTGTGGGCTTTCG-AAAAGGGTGCCACTAACTTGT
* *
1283207 GGGC-TTTG-AAGGTTGCCACTGACTTGTGGGCTT
65 GGGCTTTTGAAAGGGTGCCACTAACTTGTGGGCTT
1283240 TTGAAAAAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
120 23 0.27
122 7 0.08
123 40 0.47
124 15 0.18
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (123 bp):
TTGTGAGCTTTGGAAAAGGATGCCACCAACTTGTGGGCTTTCGAAAAGGGTGCCACTAACTTGTG
GGCTTTTGAAAGGGTGCCACTAACTTGTGGGCTTAAAAAGAAAAAGAGTGCTATAGAG
Found at i:1284746 original size:1 final size:1
Alignment explanation
Indices: 1284742--1284844 Score: 80
Period size: 1 Copynumber: 103.0 Consensus size: 1
1284732 CCGAACCCCC
* * * * ** * * *
1284742 TTTTTTTGTTTTTGTTTTTTTTTTTGTTTTTGTTTTTGGTTTTTTTTTGTGTTTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
1284807 TTTTGTTTTTTGTTTTTTTTTTGTTTTGTTTGTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1284845 GGAGGACGCC
Statistics
Matches: 76, Mismatches: 26, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (1 bp):
T
Found at i:1284763 original size:18 final size:17
Alignment explanation
Indices: 1284742--1284844 Score: 116
Period size: 18 Copynumber: 5.6 Consensus size: 17
1284732 CCGAACCCCC
*
1284742 TTTTTTTGTTTTTGTTT
1 TTTTTTTTTTTTTGTTT
1284759 TTTTTTTTGTTTTTGTTT
1 TTTTTTTT-TTTTTGTTT
*
1284777 TTGGTTTTTTTTTGTGTTTT
1 TT--TTTTTTTTTTTG-TTT
1284797 TTTTTTGTTTTTTTGTTT
1 TTTTTT-TTTTTTTGTTT
1284815 TTTGTTTTTTTTTTGTTT
1 TTT-TTTTTTTTTTGTTT
1284833 TGTTTGTTTTTT
1 T-TTT-TTTTTT
1284845 GGAGGACGCC
Statistics
Matches: 75, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.09
18 34 0.45
19 23 0.31
20 11 0.15
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (17 bp):
TTTTTTTTTTTTTGTTT
Found at i:1284764 original size:11 final size:11
Alignment explanation
Indices: 1284744--1284845 Score: 109
Period size: 11 Copynumber: 9.0 Consensus size: 11
1284734 GAACCCCCTT
1284744 TTTTTGTTTTTG
1 TTTTT-TTTTTG
1284756 TTTTTTTTTTTG
1 -TTTTTTTTTTG
1284768 TTTTTGTTTTTGG
1 TTTTT-TTTTT-G
1284781 TTTTTTTTTGTG
1 TTTTTTTTT-TG
1284793 TTTTTTTTTTG
1 TTTTTTTTTTG
*
1284804 TTTTTTTGTT-
1 TTTTTTTTTTG
*
1284814 TTTTGTTTTT-
1 TTTTTTTTTTG
*
1284824 TTTTTGTTTTG
1 TTTTTTTTTTG
*
1284835 TTTGTTTTTTG
1 TTTTTTTTTTG
1284846 GAGGACGCCG
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
10 16 0.21
11 25 0.32
12 25 0.32
13 12 0.15
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:1284765 original size:12 final size:12
Alignment explanation
Indices: 1284743--1284833 Score: 112
Period size: 13 Copynumber: 7.3 Consensus size: 12
1284733 CGAACCCCCT
1284743 TTTTTTGTTTTTG
1 TTTTTT-TTTTTG
1284756 TTTTTTTTTTTG
1 TTTTTTTTTTTG
*
1284768 TTTTTGTTTTTG
1 TTTTTTTTTTTG
*
1284780 -GTTTTTTTTTG
1 TTTTTTTTTTTG
1284791 TGTTTTTTTTTTG
1 T-TTTTTTTTTTG
*
1284804 TTTTTTTGTTTTT
1 TTTTTTT-TTTTG
1284817 TGTTTTTTTTTTG
1 T-TTTTTTTTTTG
1284830 TTTT
1 TTTT
1284834 GTTTGTTTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
11 9 0.13
12 26 0.38
13 27 0.40
14 6 0.09
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:1292962 original size:21 final size:21
Alignment explanation
Indices: 1292938--1292984 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
1292928 TTTAATGCTG
1292938 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
1292958 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
1292979 ATTTTG
1 ATTTTG
1292985 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:1293123 original size:13 final size:13
Alignment explanation
Indices: 1293105--1293143 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
1293095 ATAATCACCC
*
1293105 TGTATCGATACAG
1 TGTATCGATACAA
*
1293118 TGTATCAATACAA
1 TGTATCGATACAA
1293131 TGTATCGATACAA
1 TGTATCGATACAA
1293144 AGAAAAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1293154 original size:20 final size:20
Alignment explanation
Indices: 1293129--1293207 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
1293119 GTATCAATAC
1293129 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
1293149 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
1293174 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
1293194 CATGTATCGATACA
1 AATGTATCGATACA
1293208 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:1295243 original size:15 final size:15
Alignment explanation
Indices: 1295223--1295253 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1295213 ATTTCGTTTG
*
1295223 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1295238 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1295253 G
1 G
1295254 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1297086 original size:21 final size:21
Alignment explanation
Indices: 1297057--1297101 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1297047 AAGTTTTCAT
*
1297057 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1297077 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1297099 TTT
1 TTT
1297102 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1299327 original size:13 final size:13
Alignment explanation
Indices: 1299309--1299334 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1299299 CAATTTTTTG
1299309 TGTATCGATACAT
1 TGTATCGATACAT
1299322 TGTATCGATACAT
1 TGTATCGATACAT
1299335 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1300467 original size:31 final size:31
Alignment explanation
Indices: 1300385--1300562 Score: 153
Period size: 31 Copynumber: 5.6 Consensus size: 31
1300375 TCTTTTCTAT
* *
1300385 GTCCACGACTTAGTGGCATCCTTTTCTT-CAAA
1 GTCCATGACTCAGTGGCAT-CTTTT-TTCCAAA
* ** *
1300417 ATCCACAACTCAGTGGCATCTCTTTTCCAAA
1 GTCCATGACTCAGTGGCATCTTTTTTCCAAA
* *
1300448 GTTCATGACTCAGTAGCATCTTTTCTT-CAAA
1 GTCCATGACTCAGTGGCATCTTTT-TTCCAAA
* *
1300479 GTCCATGACTTAGTGGCATTTTTTTTCCTCAAA
1 GTCCATGACTCAGTGGCATCTTTTTT-C-CAAA
* *
1300512 GTCCACGACTCAGTGGCATCTTTTTTTTTCAAA
1 GTCCATGACTCAGTGGCATC--TTTTTTCCAAA
* *
1300545 GTCCACGACTCCGTGGCA
1 GTCCATGACTCAGTGGCA
1300563 CCCTTTAAAG
Statistics
Matches: 120, Mismatches: 19, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
30 4 0.03
31 50 0.42
32 18 0.15
33 42 0.35
35 6 0.05
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (31 bp):
GTCCATGACTCAGTGGCATCTTTTTTCCAAA
Found at i:1300511 original size:33 final size:33
Alignment explanation
Indices: 1300385--1300562 Score: 179
Period size: 33 Copynumber: 5.5 Consensus size: 33
1300375 TCTTTTCTAT
* *
1300385 GTCCACGACTTAGTGGCA-TCCTTTTCTTCAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
* * *
1300417 ATCCACAACTCAGTGGCATCTCTTTTC--CAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
* * *
1300448 GTTCATGACTCAGTAGCA--TCTTTTCTTCAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
* * * *
1300479 GTCCATGACTTAGTGGCATTTTTTTTCCTCAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
*
1300512 GTCCACGACTCAGTGGCATCTT-TTTTTTTCAAA
1 GTCCACGACTCAGTGGCAT-TTCTTTTCTTCAAA
*
1300545 GTCCACGACTCCGTGGCA
1 GTCCACGACTCAGTGGCA
1300563 CCCTTTAAAG
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
29 7 0.06
31 36 0.30
32 15 0.12
33 60 0.50
34 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (33 bp):
GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
Found at i:1300582 original size:27 final size:27
Alignment explanation
Indices: 1300542--1300618 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
1300532 TTTTTTTTTC
*
1300542 AAAGTCCACGACTCCGTGGCACCCTTT
1 AAAGTCCACAACTCCGTGGCACCCTTT
* * *
1300569 AAAGCCCACAACTCTGTGGCATCCTTT
1 AAAGTCCACAACTCCGTGGCACCCTTT
*
1300596 TAAGTCCACAACTCCGTGGCACC
1 AAAGTCCACAACTCCGTGGCACC
1300619 TTATCCCTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.25, C:0.36, G:0.17, T:0.22
Consensus pattern (27 bp):
AAAGTCCACAACTCCGTGGCACCCTTT
Found at i:1300628 original size:60 final size:60
Alignment explanation
Indices: 1300563--1300721 Score: 167
Period size: 66 Copynumber: 2.6 Consensus size: 60
1300553 CTCCGTGGCA
* * *
1300563 CCCTTTAAAGCCCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCTTAT
1 CCCTTTTAAGTCCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCCATGGCACCTTAT
* ** * *
1300623 CCCTTTTAAGTCCACAATTCCATGGCATCTTTTCCTTTTTAAGTCCACAACTCTATGGCACCTTG
1 CCCTTTTAAGTCCACAACTCTGTGGCA-----TCC-TTTTAAGTCCACAACTCCATGGCACCTTA
1300688 T
60 T
* *
1300689 TCCTTTTAAGTCCACAACTCTGTAGCA-CCTTTT
1 CCCTTTTAAGTCCACAACTCTGTGGCATCCTTTT
1300722 CTTTTTACGT
Statistics
Matches: 80, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
59 4 0.05
60 24 0.30
65 3 0.04
66 49 0.61
ACGTcount: A:0.22, C:0.32, G:0.11, T:0.35
Consensus pattern (60 bp):
CCCTTTTAAGTCCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCCATGGCACCTTAT
Found at i:1300633 original size:33 final size:33
Alignment explanation
Indices: 1300591--1300897 Score: 168
Period size: 33 Copynumber: 9.8 Consensus size: 33
1300581 TCTGTGGCAT
1300591 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* * * *
1300624 CCTTTTAAGTCCACAATTCCATGGCATCTTTTC
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* ** * *
1300657 CTTTTTAAGTCCACAACTCTATGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* * *
1300690 CCTTTTAAGTCCACAACTCTGTAGCACCTT-TT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* * ** *
1300722 CTTTTTACGTCCATGACTCTGTGG---C--A-C
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* * *
1300749 CCTTTTAAGCCCATAACTCCGTGGCACTCTTTTTC
1 CCTTTTAAGTCCACAACTCCGTGGCAC-C-TTATC
* *
1300784 CC-TTTAAGTCCATAACTCAGTGG---C--A-C
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* * *
1300810 CCTTTTAAATCCATAACTCTGTGG---C--A-C
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* * *
1300837 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
* * * *
1300870 CCTTTTAAGCCCATAAGTCAGTGGCACC
1 CCTTTTAAGTCCACAACTCCGTGGCACC
1300898 CCTTTCAAAG
Statistics
Matches: 218, Mismatches: 40, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
26 3 0.01
27 62 0.28
29 1 0.00
30 2 0.01
31 1 0.00
32 21 0.10
33 106 0.49
34 19 0.09
35 3 0.01
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTATC
Found at i:1300668 original size:66 final size:65
Alignment explanation
Indices: 1300593--1300749 Score: 197
Period size: 66 Copynumber: 2.4 Consensus size: 65
1300583 TGTGGCATCC
* * * *
1300593 TTTTAAGTCCACAACTCCGTGGCACCTTATCCCTTTTAAGTCCACAATTCCATGGCATCTTTTCC
1 TTTTAAGTCCACAACTCTGTGGCACCTTATCCCTTTTAAGTCCACAACTCCATAGCACCTTTT-C
1300658 T
65 T
* * * **
1300659 TTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTTAAGTCCACAACTCTGTAGCACCTTTTCT
1 TTTTAAGTCCACAACTCTGTGGCACCTTATCCCTTTTAAGTCCACAACTCCATAGCACCTTTTCT
* **
1300724 TTTTACGTCCATGACTCTGTGGCACC
1 TTTTAAGTCCACAACTCTGTGGCACC
1300750 CTTTTAAGCC
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
65 24 0.31
66 54 0.69
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (65 bp):
TTTTAAGTCCACAACTCTGTGGCACCTTATCCCTTTTAAGTCCACAACTCCATAGCACCTTTTCT
Found at i:1300762 original size:27 final size:27
Alignment explanation
Indices: 1300690--1300862 Score: 139
Period size: 27 Copynumber: 6.0 Consensus size: 27
1300680 GCACCTTGTT
* *
1300690 CCTTTTAAGTCCACAACTCTGTAGCAC
1 CCTTTTAAGTCCATAACTCTGTGGCAC
* *
1300717 CTTTTCTTTTTACGTCCATGACTCTGTGGCAC
1 C----C-TTTTAAGTCCATAACTCTGTGGCAC
* *
1300749 CCTTTTAAGCCCATAACTCCGTGGCACTC
1 CCTTTTAAGTCCATAACTCTGTGGCA--C
* *
1300778 TTTTTCCCTTTAAGTCCATAACTCAGTGGCAC
1 -----CCTTTTAAGTCCATAACTCTGTGGCAC
*
1300810 CCTTTTAAATCCATAACTCTGTGGCAC
1 CCTTTTAAGTCCATAACTCTGTGGCAC
* *
1300837 CCTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAGTCCATAACTCTGTGGCA
1300863 TCTTTTTCCT
Statistics
Matches: 117, Mismatches: 17, Indels: 24
0.74 0.11 0.15
Matches are distributed among these distances:
27 68 0.58
28 1 0.01
29 1 0.01
31 1 0.01
32 23 0.20
34 23 0.20
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (27 bp):
CCTTTTAAGTCCATAACTCTGTGGCAC
Found at i:1300807 original size:61 final size:60
Alignment explanation
Indices: 1300690--1300842 Score: 191
Period size: 61 Copynumber: 2.5 Consensus size: 60
1300680 GCACCTTGTT
* * ** * * *
1300690 CCTTTTAAGTCCACAACTCTGTAGCACC-TTTTCTTTTTACGTCCATGACTCTGTGGCAC
1 CCTTTTAAGTCCATAACTCTGTGGCACCTTTTTCCCTTTAAGTCCATAACTCAGTGGCAC
* *
1300749 CCTTTTAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTAAGTCCATAACTCAGTGGCAC
1 CCTTTTAAGTCCATAACTCTGTGGCAC-CTTTTTCCCTTTAAGTCCATAACTCAGTGGCAC
* *
1300810 CCTTTTAAATCCATAACTCTGTGGCACCCTTTT
1 CCTTTTAAGTCCATAACTCTGTGGCACCTTTTT
1300843 AAGTCCACAA
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
59 23 0.29
60 6 0.08
61 50 0.63
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.36
Consensus pattern (60 bp):
CCTTTTAAGTCCATAACTCTGTGGCACCTTTTTCCCTTTAAGTCCATAACTCAGTGGCAC
Found at i:1300869 original size:27 final size:27
Alignment explanation
Indices: 1300786--1300898 Score: 118
Period size: 27 Copynumber: 4.0 Consensus size: 27
1300776 TCTTTTTCCC
1300786 TTTAAGTCCATAACTCAGTGGCACCCT
1 TTTAAGTCCATAACTCAGTGGCACCCT
* *
1300813 TTTAAATCCATAACTCTGTGGCACCCT
1 TTTAAGTCCATAACTCAGTGGCACCCT
* *
1300840 TTTAAGTCCACAACTCCGTGGCATCTTTTTCCT
1 TTTAAGTCCATAACTCAGTGGCA-C-----CCT
* *
1300873 TTTAAGCCCATAAGTCAGTGGCACCC
1 TTTAAGTCCATAACTCAGTGGCACCC
1300899 CTTTCAAAGC
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
27 47 0.66
28 1 0.01
32 1 0.01
33 22 0.31
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (27 bp):
TTTAAGTCCATAACTCAGTGGCACCCT
Found at i:1300901 original size:88 final size:88
Alignment explanation
Indices: 1300659--1300902 Score: 292
Period size: 88 Copynumber: 2.7 Consensus size: 88
1300649 ATCTTTTCCT
** * * * * * *
1300659 TTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTTAAGTCCACAACTCTGTAGCACCTTTTCT
1 TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACC----CC
** *
1300724 TTTTACGTCCATGACTCTGTGGCACCC
62 TTTTAAATCCATAACTCTGTGGCACCC
* * *
1300751 TTTTAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTAAGTCCATAACTCAGTGGCA-CCCTTT
1 TTTTAAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACCCCTTT
1300815 TAAATCCATAACTCTGTGGCACCC
65 TAAATCCATAACTCTGTGGCACCC
* *
1300839 TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGCCCATAAGTCAGTGGCACCCCTTT
1 TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACCCCTTT
1300903 CAAAGCCCAC
Statistics
Matches: 131, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
87 30 0.23
88 53 0.40
92 21 0.16
93 27 0.21
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (88 bp):
TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACCCCTTTT
AAATCCATAACTCTGTGGCACCC
Found at i:1300929 original size:28 final size:29
Alignment explanation
Indices: 1300876--1300970 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
1300866 TTTTCCTTTT
* *
1300876 AAGCCCATAAGTCAGTGGCACCCCTTTC-A
1 AAGCCCACAAGTCAGTGGCA-ACCTTTCAA
1300905 AAGCCCACAAGTCAGTGGCAACC-TTCAA
1 AAGCCCACAAGTCAGTGGCAACCTTTCAA
* **
1300933 AAGCACACAAGTTGGT-GCAACCTTTTCAA
1 AAGCCCACAAGTCAGTGGCAACC-TTTCAA
1300962 AAGCCCACA
1 AAGCCCACA
1300971 CAAGTTGCTG
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
27 9 0.16
28 16 0.28
29 32 0.56
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.18
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCAACCTTTCAA
Found at i:1300952 original size:27 final size:29
Alignment explanation
Indices: 1300898--1300983 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 29
1300888 CAGTGGCACC
* **
1300898 CCTTTC-AAAGCCCACAAGTCAGTGGCAA
1 CCTTTCAAAAGCACACAAGTTGGTGGCAA
1300926 CC-TTCAAAAGCACACAAGTTGGT-GCAA
1 CCTTTCAAAAGCACACAAGTTGGTGGCAA
*
1300953 CCTTTTCAAAAGCCCACACAAGTTGCTGGCA
1 CC-TTTCAAAAG--CACACAAGTTGGTGGCA
1300984 TCTTCTTCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
27 9 0.19
28 16 0.33
29 8 0.17
31 12 0.25
32 3 0.06
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (29 bp):
CCTTTCAAAAGCACACAAGTTGGTGGCAA
Found at i:1301056 original size:49 final size:49
Alignment explanation
Indices: 1300987--1301415 Score: 391
Period size: 49 Copynumber: 8.8 Consensus size: 49
1300977 GCTGGCATCT
*
1300987 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TCTT-TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* *
1301037 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TTG
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* * *
1301085 TCTTTAAAACCCAATGTCGCTGGCCTTGAATCAGCACATTGG------TA
1 TCTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
*
1301129 ----TAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTG
1 TCTTTAAGACC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* * * * **
1301173 TCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATCGGCACCTCAACCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT---TTA
* * * * *
1301225 TCTTTAAGCCCAATATCGGTGACCTTGAATCAGCATATTGGCA-CGTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* * * * * *
1301273 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAATGGTACCTTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* *
1301322 TCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCGTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-A
* * * * *
1301374 TCTTTAAAACCCAATATTGTTGGCCGTGAATCAGCGTATTGG
1 TCTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCATATTGG
1301416 TCCTTTTATC
Statistics
Matches: 313, Mismatches: 45, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.01
39 28 0.09
40 3 0.01
44 2 0.01
48 82 0.26
49 118 0.38
50 4 0.01
51 1 0.00
52 44 0.14
53 29 0.09
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
Found at i:1301216 original size:48 final size:48
Alignment explanation
Indices: 1301136--1301368 Score: 268
Period size: 48 Copynumber: 4.8 Consensus size: 48
1301126 GTATAAGCCT
* *
1301136 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCC
* * * * * *
1301184 AATGTCACTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTTTAAGCCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCT----TATCTTTAAGTCC
* * * *
1301236 AATATCGGTGACCTTGAATCAGCATATTGGCACGTCATCTTTAAGTCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCC
* * * *
1301284 AATGTCGCTGGCCTTGAATCAGCACAATGGTACCTTCATCTTTAAGTCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGTCC
*
1301333 AATATTGCTGGCCTTGAATCAGCATATTGGCACCTT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT
1301369 CGTCATCTTT
Statistics
Matches: 152, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 71 0.47
49 43 0.28
52 38 0.25
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (48 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGTCC
Found at i:1301302 original size:100 final size:97
Alignment explanation
Indices: 1301129--1301367 Score: 327
Period size: 100 Copynumber: 2.4 Consensus size: 97
1301119 CACATTGGTA
* **
1301129 TAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCACTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTG
1301194 GCCTTGAATCAGCAC-ATCGGCACCTCAACCATCTT
66 GCCTTGAATCAGCACAAT-GGCACCT---CCATCTT
* * * * *
1301229 TAAGCCCAATATCGGTGACCTTGAATCAGCATATTGGCACGTCATCTTTAAGTCCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTG
* *
1301294 GCCTTGAATCAGCACAATGGTACCTTCATCTT
66 GCCTTGAATCAGCACAATGGCACCTCCATCTT
* *
1301326 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT
1301368 TCGTCATCTT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
97 43 0.35
100 78 0.63
101 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (97 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTG
GCCTTGAATCAGCACAATGGCACCTCCATCTT
Found at i:1301991 original size:19 final size:19
Alignment explanation
Indices: 1301967--1302029 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
1301957 AAATAGTAAC
1301967 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
1301986 TGTATCGAT--ATAA----
1 TGTATCGATACATAAGTGT
1301999 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
1302018 TGTATCGATACA
1 TGTATCGATACA
1302030 ATGTATCGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
15 4 0.11
17 4 0.11
19 21 0.55
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:1302008 original size:32 final size:32
Alignment explanation
Indices: 1301967--1302046 Score: 135
Period size: 32 Copynumber: 2.5 Consensus size: 32
1301957 AAATAGTAAC
*
1301967 TGTATCGATACATAAGTGTTGTATCGATATAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1301999 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
1302031 TGTATCGTTACA-AAGT
1 TGTATCGATACATAAGT
1302047 TACTGCCAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 4 0.09
32 42 0.91
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1305716 original size:13 final size:13
Alignment explanation
Indices: 1305698--1305723 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1305688 TATACCAAGT
1305698 ATGTATCGATACA
1 ATGTATCGATACA
1305711 ATGTATCGATACA
1 ATGTATCGATACA
1305724 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1305721 original size:32 final size:33
Alignment explanation
Indices: 1305680--1305743 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1305670 TAGCCAAACT
* **
1305680 TGTATCGATATACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
1305712 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
1305744 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:1307220 original size:13 final size:13
Alignment explanation
Indices: 1307198--1307237 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
1307188 ACAATGTTCT
1307198 TTGTATCGATACA
1 TTGTATCGATACA
*
1307211 TTGTACCGATACA
1 TTGTATCGATACA
* *
1307224 ATATATCGATACA
1 TTGTATCGATACA
1307237 T
1 T
1307238 GGGTTACTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1308731 original size:33 final size:33
Alignment explanation
Indices: 1308689--1308752 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
1308679 CGAGAGTTGA
*
1308689 TCACTTCACTTTCGCAGCACATGAATGAGCACT
1 TCACTTCACTCTCGCAGCACATGAATGAGCACT
* *
1308722 TCACTTCACTCTCGTAGCACATGGATGAGCA
1 TCACTTCACTCTCGCAGCACATGAATGAGCA
1308753 TTTTAGTGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (33 bp):
TCACTTCACTCTCGCAGCACATGAATGAGCACT
Found at i:1309702 original size:13 final size:13
Alignment explanation
Indices: 1309684--1309710 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1309674 TCATTATGCT
1309684 TTGTATCGATACA
1 TTGTATCGATACA
1309697 TTGTATCGATACA
1 TTGTATCGATACA
1309710 T
1 T
1309711 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1309719 original size:19 final size:20
Alignment explanation
Indices: 1309695--1309750 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 20
1309685 TGTATCGATA
*
1309695 CATTGTATCGATACATG-TT
1 CATTGTATCGATACATGCAT
1309714 CATTGTATCGATACATGCAT
1 CATTGTATCGATACATGCAT
*
1309734 AATTGTATCGATACATG
1 CATTGTATCGATACATG
1309751 AAATTGGAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
CATTGTATCGATACATGCAT
Found at i:1309740 original size:20 final size:19
Alignment explanation
Indices: 1309691--1309756 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 19
1309681 GCTTTGTATC
1309691 GATACATTGTATCGATACAT
1 GATA-ATTGTATCGATACAT
* *
1309711 GTTCATTGTATCGATACAT
1 GATAATTGTATCGATACAT
1309730 GCATAATTGTATCGATACAT
1 G-ATAATTGTATCGATACAT
1309750 GA-AATTG
1 GATAATTG
1309757 GAAGTAGCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.12
19 17 0.41
20 19 0.46
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (19 bp):
GATAATTGTATCGATACAT
Found at i:1311461 original size:151 final size:151
Alignment explanation
Indices: 1311181--1311462 Score: 449
Period size: 151 Copynumber: 1.9 Consensus size: 151
1311171 AGATAATATG
* *
1311181 GATTCTCGTAACGATCTTCATTCATTTTATGATTAAGCACTATTAACACATTCTCCTCAGTAGAA
1 GATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCTCCTCAGTAGAA
*
1311246 TAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCA
66 TAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
1311311 ATATCAAATTAGACAAACATT
131 ATATCAAATTAGACAAACATT
* * * * * * *
1311332 GATTCTAGTAATGATCTTCTTTCATTTTATGATTAAGCACTATAAACATATTTTCTTTAGTAGGA
1 GATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCTCCTCAGTAGAA
*
1311397 TAAATAGA-ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAGAATC
66 TAAATA-ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATC
1311461 AA
130 AA
1311463 AGTTCATCCC
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
151 118 0.99
152 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.43
Consensus pattern (151 bp):
GATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCTCCTCAGTAGAA
TAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
ATATCAAATTAGACAAACATT
Found at i:1312990 original size:476 final size:475
Alignment explanation
Indices: 1311314--1313653 Score: 2632
Period size: 476 Copynumber: 4.9 Consensus size: 475
1311304 AAAATCAATA
* * *
1311314 TCAAATTAGACAAACATTGATTCTAGTAATGATCTTCTTTCATTTTATGATTAAGCACTATAAAC
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* * * *
1311379 ATATTTTCTTTAGTAGGATAAATAGA-ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
66 ACATTCTCCTCAGTAGGATAAAT-GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
* *
1311443 CCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAACAGTCT
130 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
* *
1311508 CAATTATTTTCAGGATTGGGAACCTAAAACATATTCTTTTCATTAGGATACATGACATTGATGCT
195 CAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
* * * *
1311573 TTGGTGTCATAAGAAAAGCTTTTTTTTCCACCGTTTTTGATAGAATGAAAGTTTTTCTCTTAAAT
260 TTGGTGTCCTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * ** * *
1311638 AAGACAAACTTGAATACTCATACCAATCCCCATTCCTTTCAATATTGGGGACCATAAACATAGTC
325 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * *
1311703 TTCACTTTAAG-ATACGCAATATTGATGCTTTGGTTTCGCAAGAACAACATTTTTCCCACCAATT
390 TTCTCATT-AGTATACACGATATTGATGCTTTGGTTTCTCAAGAA-AGCATTTTTCCCACCAATT
* *
1311767 TTTGTAAAGTTTAAGTTCGTGCC
453 TTTGTAAAGTCTAAGTTCATGCC
* * * * * *
1311790 TTAAATAAGACAAATAAAGATTCTAGTAATGACCTTCATTCATTTTCTGATTAAGAACTATAAAC
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* * *** * *
1311855 ACATTCTCCTCGGTAGGAAAAATGATACAAATGATTTTCTTATGCATGGAAATTTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
* * * * *
1311920 CTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACAAGCATCGATTCTCTAAATAGTCTC
131 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTC
* * * * * * *
1311985 CATTATTTTCAGGACTAGGAACCTCAAACACATTCCTTTCATTAGGATATATGACATTAAGGCTT
196 AATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTT
* * * *
1312050 TGGTGTCGC-AAGAAAAAGCTTTTTTTTTCCACTGTTTTTGATAGAATCAAAATTTTTCTCTTAA
261 TGGTGTC-CTAAG-AAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * *
1312114 AAAAGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAG
323 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * *
1312179 TCTTCTCGTAAGGATACACCATATTGATGCTTTGGTTTCAT-ATG--A-CGTTTCTTCCCACCAT
388 TCTTCTCATTAGTATACACGATATTGATGCTTTGGTTTC-TCAAGAAAGCATTT-TTCCCACCAA
* * ** *
1312240 TTTTTGTAAAATCTACGTTTGTGTC
451 TTTTTGTAAAGTCTAAGTTCATGCC
* * * *
1312265 TTAAATAAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT-AGACACTATAAA
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAG-CACTATAAA
* * *
1312329 TACATTTTCCTCA-TCAGGATAAATGATATTGATGATTTTCTTTTGC------ATCTTTTCTTTG
65 CACATTCTCCTCAGT-AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA
* * * ** *
1312387 CCCTATTTTCCTTAAAATCAATGTTCATCCGTTAAATAAGACAAGAATCGATTCTCGTAACAATC
129 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTC
** * * * *
1312452 TCCAATCCTTCTT-A-GATTGGGAACCAAAAACACATTCCTTTCGTTAAGATACATGGCATTGAT
194 T-CAATTATT-TTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGAT
* * ** * * * *
1312515 GCTTTGGGGTCCTAAGAAAAGGTTTTCACTCCACCATTTCTAATCA-AATCAAAGTTTGCCTCTT
257 GCTTTGGTGTCCTAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT-AGAATCAAAGTTTGTCTCTT
* * ** * *
1312579 AAATAGGGCAAACATGAATAGTCATACTAATCCCTTTTATTTTCAAGATTAGGCACCATAAACAT
321 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * ** *
1312644 AGTCTTCTCATTAGTATACATGATACTGGCGCTTTGGTTTCTCAAGAAAGGCATTTTT-CCACAA
386 AGTCTTCTCATTAGTATACACGATATTGATGCTTTGGTTTCTCAAGAAA-GCATTTTTCCCACCA
* *
1312708 ATTTTAGTAAACTCTAAGTTCATGCC
450 ATTTTTGTAAAGTCTAAGTTCATGCC
* * ** * * ** *
1312734 ACAAACCAA-ACAAACATAGATTCTAGTAGCGATCTTCATGCATTTTGTGGCTAGGCACTATAAA
1 TCAAA-TAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAA
* * * * *
1312798 CACATTCTCCTTAGTAGGATAAATGATATTGATGATTTTTTTTTTGCATGAAAATCTTTACTTTG
65 CACATTCTCCTCAGTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTA
* *
1312863 CCCTATTTTCCTTAAAAT-AGAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAATAGT
129 CCCTATTTTCCTTAAAATCA-AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGT
* * * *
1312927 CTCTATTATTTTCAGGATTGGGAACCTAAAACATATTCCCTTCATTAGGATACATGACATTGATT
193 CTCAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATG
* * * *
1312992 CTTTGGTGTCGC-AAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGCTCGCCTCTTA
258 CTTTGGTGTC-CTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * * *
1313056 AATAAGACAAACATGAATACTCAAACCAATCCCCATTCTTTTTAGGATTAGTCACCATAAACAAA
322 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* ** * * * *
1313121 GTCTTCTCTTTAAG-ATATGCGATATTAATGTTTTGGTTT-TGCAAGACAGGCA-TTTTCCCACT
387 GTCTTCTCATT-AGTATACACGATATTGATGCTTTGGTTTCT-CAAGA-AAGCATTTTTCCCACC
* *
1313183 GATTCTTGTAAAGTCTAAGTTCATGCC
449 AATTTTTGTAAAGTCTAAGTTCATGCC
* * * * * *
1313210 TCAAATTAGACAAACATGGATTCTAGTAACGATATTCATTCATTTTATGATTAAGTATTATAAAC
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
1313275 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
* * *
1313340 CTATTTT-TTGTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCAAAACAGTAT
131 CTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
* *
1313404 CAATTATTTTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAAGATACATGACATTGATGCT
195 CAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
* * * * *
1313469 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAGTCAAAGTTTGTCTTTTAAAT
260 TTGGTGTCCTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
1313534 AAGACAAACATGAGTAGTCATACTAATCACCATTCTTTTTAGGACTAGGCACCAAAAACATAGTC
325 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * *
1313599 TTTTCATTATGATATGCA--ATATTGATGTTTTGGTTTCGT-AGGAAAGGCATTTTTC
390 TTCTCATTA-G-TATACACGATATTGATGCTTTGGTTTC-TCAAGAAA-GCATTTTTC
1313654 TTTTGAGAGA
Statistics
Matches: 1547, Mismatches: 269, Indels: 96
0.81 0.14 0.05
Matches are distributed among these distances:
466 1 0.00
467 121 0.08
468 7 0.00
469 221 0.14
470 22 0.01
471 6 0.00
474 12 0.01
475 418 0.27
476 595 0.38
477 15 0.01
478 129 0.08
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (475 bp):
TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTC
AATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTT
TGGTGTCCTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
TCTCATTAGTATACACGATATTGATGCTTTGGTTTCTCAAGAAAGCATTTTTCCCACCAATTTTT
GTAAAGTCTAAGTTCATGCC
Found at i:1313181 original size:945 final size:944
Alignment explanation
Indices: 1311314--1313636 Score: 2753
Period size: 945 Copynumber: 2.4 Consensus size: 944
1311304 AAAATCAATA
* *
1311314 TCAAATTAGACAAACATTGATTCTAGTAATGATCTTCTTTCATTTTATGATTAAGCACTATAAAC
1 TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* * *
1311379 ATATTTTCTTTAGTAGGATAAATAGA-ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
66 ACATTTTCCTCAGTAGGATAAAT-GATATTGATGATTTTCTTTTGC-----AATCTTTTCTTTAC
* *
1311443 CCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAACAGTCT
125 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
* * *
1311508 CAATTATTTTCAGGATTGGGAACCTAAAACATATTCTTTTCATTAGGATACATGACATTGATGCT
190 CAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAAGATACATGACATTGATGCT
* * *
1311573 TTGGTGTCATAAGAAAAGCTTTTTTTTCCACCGTTTTTGATAGAATGAAAGTTTTTCTCTTAAAT
255 TTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * ** * * *
1311638 AAGACAAACTTGAATACTCATACCAATCCCCATTCCTTTCAATATTGGGGACCATAAACATAGTC
320 AAGACAAACATGAATAGTCATACTAAT-CCCTTTTTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * * *
1311703 TTCACTTTAAGATACGCAATATTGATGCTTTGGTTTCGCAAGAACAACATTTTTCCCACCAATTT
384 TTCTCATT-AGATACACAATACTGACGCTTTGGTTTCGCAAGAACAACATTTTTCCCACAAATTT
* * * * ** * * * *
1311768 TTGTAAAGTTTAAGTTCGTGCCTTAAATAAGACAAATAAAGATTCTAGTAATGACCTTCATTCAT
448 TAGTAAACTCTAAGTTCATGCCACAAACAAGACAAACAAAGATTCTAGTAACGACCTTCATGCAT
* *
1311833 TTTCTGATTAAGAACTATAAACACATTCTCCTCGGTAGGAAAAATGATACAAATGATTTTCTTAT
513 TTTCTGACTAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATGATACAAATGATTTTCTTAT
* * *
1311898 GCATGGAAATTTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACAAG
578 GCATGAAAATCTTTACTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACAAG
* * *
1311963 CATCGATTCTCTAAATAGTCTCCATTATTTTCAGGACTAGGAACCTCAAACACATTCCTTTCATT
643 CATCGATTCTCAAAATAGTCTCCATTATTTTCAGGACTAGGAACCTAAAACACATTCCCTTCATT
* *
1312028 AGGATATATGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTTTTTCCACTGTTTTTGATA
708 AGGATACATGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTCTTTCCACTGTTTTTGATA
* *** * *
1312093 GAATCAAAATTTTTCTCTTAAAAAAGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAG
773 GAATCAAAACTCGCCTCTTAAAAAAGACAAACATGAATACTCAAACCAATCCCCATTCTTTTCAG
* * *
1312158 GATTTGGCACCATAAACATAGTCTTCTCGTAAGGATACACCATATTGATGCTTTGGTTTCATATG
838 GATTAGGCACCATAAACAAAGTCTTCTCGTAAGGATACACCATATTAATGCTTTGGTTTCATATG
* * * ** *
1312223 ACGTTTCTTCCCAC-CATTTTTTGTAAAATCTACGTTTGTGTC
903 ACGATTCTTCCCACTCA-TTCTTGTAAAATCTAAGTTCATGCC
* * * *
1312265 TTAAATAAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT-AGACACTATAAA
1 TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAG-CACTATAAA
* *
1312329 TACATTTTCCTCA-TCAGGATAAATGATATTGATGATTTTCTTTTGC-ATCTTTTCTTTGCCCTA
65 CACATTTTCCTCAGT-AGGATAAATGATATTGATGATTTTCTTTTGCAATCTTTTCTTTACCCTA
* * * ** *
1312392 TTTTCCTTAAAATCAATGTTCATCCGTTAAATAAGACAAGAATCGATTCTCGTAACAATCTCCAA
129 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT-CAA
** * * *
1312457 TCCTTCTT-A-GATTGGGAACCAAAAACACATTCCTTTCGTTAAGATACATGGCATTGATGCTTT
193 TTATT-TTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAAGATACATGACATTGATGCTTT
* * * ** * * * *
1312520 GGGGTCCTAAGAAAAGGTTTTCACTCCACCATTTCTAATCA-AATCAAAGTTTGCCTCTTAAATA
257 GGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT-AGAATCAAAGTTTGTCTCTTAAATA
* *
1312584 GGGCAAACATGAATAGTCATACTAATCCCTTTTATTTTCAAGATTAGGCACCATAAACATAGTCT
321 AGACAAACATGAATAGTCATACTAATCCCTTTT-TTTTCAAGATTAGGCACCATAAACATAGTCT
** * * *
1312649 TCTCATTAGTATACATGATACTGGCGCTTTGGTTTCTCAAGAA-AGGCATTTTT-CCACAAATTT
385 TCTCATTAG-ATACACAATACTGACGCTTTGGTTTCGCAAGAACA-ACATTTTTCCCACAAATTT
* * *
1312712 TAGTAAACTCTAAGTTCATGCCACAAACCAA-ACAAACATAGATTCTAGTAGCGATCTTCATGCA
448 TAGTAAACTCTAAGTTCATGCCACAAA-CAAGACAAACAAAGATTCTAGTAACGACCTTCATGCA
* * * * * * *** *
1312776 TTTTGTGGCTAGGCACTATAAACACATTCTCCTTAGTAGGATAAATGATATTGATGATTTTTTTT
512 TTTTCTGACTAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATGATACAAATGA-TTTTCTT
* * * * * *
1312841 TTGCATGAAAATCTTTACTTTGCCCTATTTTCCTTAAAAT-AGAAGTTCATCCCTTAAATAAGAT
576 ATGCATGAAAATCTTTACTTTACCCTATTTTCCTTAAAATCA-AAGTTCACCCCTCAAAAAAGAC
* * * *
1312905 AAGCATCGATTCTCAAAATAGTCTCTATTATTTTCAGGATTGGGAACCTAAAACATATTCCCTTC
640 AAGCATCGATTCTCAAAATAGTCTCCATTATTTTCAGGACTAGGAACCTAAAACACATTCCCTTC
* **
1312970 ATTAGGATACATGACATTGATTCTTTGGTGTCGCAAG-AAAAGC-TTTTCTTTCCA-TCGTTTTT
705 ATTAGGATACATGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTCTTTCCACT-GTTTTT
* *
1313032 GATAGAATCAAAGCTCGCCTCTTAAATAAGACAAACATGAATACTCAAACCAATCCCCATTCTTT
769 GATAGAATCAAAACTCGCCTCTTAAAAAAGACAAACATGAATACTCAAACCAATCCCCATTCTTT
* * * ** * *
1313097 TTAGGATTAGTCACCATAAACAAAGTCTTCTCTTTAA-GATATGCGATATTAATGTTTTGGTTTT
834 TCAGGATTAGGCACCATAAACAAAGTCTTCTC-GTAAGGATACACCATATTAATGCTTTGG-TTT
* *
1313161 GCA-A-GACAGGCATT-TTCCCACTGATTCTTGTAAAGTCTAAGTTCATGCC
897 -CATATGAC--G-ATTCTTCCCACTCATTCTTGTAAAATCTAAGTTCATGCC
* * * *
1313210 TCAAATTAGACAAACATGGATTCTAGTAACGATATTCATTCATTTTATGATTAAGTATTATAAAC
1 TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
*
1313275 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
66 ACATTTTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGC-----AATCTTTTCTTTACC
* * *
1313340 CTATTTT-TTGTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCAAAACAGTAT
126 CTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
*
1313404 CAATTATTTTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAAGATACATGACATTGATGCT
190 CAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAAGATACATGACATTGATGCT
* * * * *
1313469 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAGTCAAAGTTTGTCTTTTAAAT
255 TTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
1313534 AAGACAAACATGAGTAGTCATACTAATCACCATTCTTTTT-AGGACTAGGCACCAAAAACATAGT
320 AAGACAAACATGAATAGTCATACTAATC-CC-TTTTTTTTCAAGATTAGGCACCATAAACATAGT
* ** * * *
1313598 CTTTTCATTATGATATGCAATATTGATGTTTTGGTTTCG
383 CTTCTCATTA-GATACACAATACTGACGCTTTGGTTTCG
1313637 TAGGAAAGGC
Statistics
Matches: 1148, Mismatches: 189, Indels: 70
0.82 0.13 0.05
Matches are distributed among these distances:
942 1 0.00
943 122 0.11
944 125 0.11
945 529 0.46
946 14 0.01
947 2 0.00
949 2 0.00
950 14 0.01
951 329 0.29
952 7 0.01
953 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (944 bp):
TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
ACATTTTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCAATCTTTTCTTTACCCTATT
TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCAATTA
TTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAAGATACATGACATTGATGCTTTGGTG
TCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACATGAATAGTCATACTAATCCCTTTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
TAGATACACAATACTGACGCTTTGGTTTCGCAAGAACAACATTTTTCCCACAAATTTTAGTAAAC
TCTAAGTTCATGCCACAAACAAGACAAACAAAGATTCTAGTAACGACCTTCATGCATTTTCTGAC
TAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATGATACAAATGATTTTCTTATGCATGAAA
ATCTTTACTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACAAGCATCGATT
CTCAAAATAGTCTCCATTATTTTCAGGACTAGGAACCTAAAACACATTCCCTTCATTAGGATACA
TGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTCTTTCCACTGTTTTTGATAGAATCAAA
ACTCGCCTCTTAAAAAAGACAAACATGAATACTCAAACCAATCCCCATTCTTTTCAGGATTAGGC
ACCATAAACAAAGTCTTCTCGTAAGGATACACCATATTAATGCTTTGGTTTCATATGACGATTCT
TCCCACTCATTCTTGTAAAATCTAAGTTCATGCC
Found at i:1313521 original size:159 final size:158
Alignment explanation
Indices: 1312875--1313544 Score: 402
Period size: 159 Copynumber: 4.2 Consensus size: 158
1312865 CTATTTTCCT
* * * *
1312875 TAAAAT-AGAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAATAGTCTCTATTATTTT
1 TAAAATCA-AAGTTCATCCCTTAAATAAGACAAACATCGATTCTCAAAACAGTATC-ATTATTTT
* * * * * *
1312939 CAGGATTGGGAACCTA-AAACATATTCCCTTCATTAGGATACATGACATTGATTCTTTGGTGTCG
64 CAGGATTAGGAACCTATAAACACATTTCTTTCATTAAGATACATGACATTGATGCTTTGGTGTCG
1313003 CAAGAAAAGCTTTTCTTTCCATC-GTTTTTG
129 CAAGAAAAGCTTTTCTTTCC-TCTGTTTTTG
* * * * * * ** *
1313033 ATAGAATCAAAGCTC-GCCTCTTAAATAAGACAAACAT-GAATACTCAAACCAATCCCCATTCTT
1 -TAAAATCAAAGTTCATCC-CTTAAATAAGACAAACATCG-ATTCTCAAAACAGT-ATCATTATT
* ** ** * *** * * * *
1313096 TTTAGGATTAGTCACC-ATAAACA-AAGTCTTCTCTTTAAGATATGCGATATTAATGTTTTGGTT
62 TTCAGGATTAGGAACCTATAAACACATTTCTT-TCATTAAGATACATGACATTGATGCTTTGGTG
* * * * *
1313159 TTGCAAGACAGGCATTTTC---CCACTGATTCTTG
126 TCGCAAGAAAAGC-TTTTCTTTCCTCTG-TTTTTG
* * * * * * *
1313191 TAAAGTCTAAGTTCATGCCTCAAATTAGACAAACATGGATTCT-AGTAAC-GATATTCATTCATT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCA-AAACAG-TA-TCATT-ATT
* * * * * * * * * * ** *
1313254 TT-ATGATTAAGTA-TTATAAACACA-TTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTT
62 TTCAGGATTAGGAACCTATAAACACATTTCT-TTCATTAAGATACATGACATTGATGCTTTGGTG
* * * * *
1313316 TTGCATGGAAATCTTTTCTTTACC-CTATTTTTTG
126 TCGCAAGAAAAGCTTTTCTTT-CCTCT-GTTTTTG
* *
1313350 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCAAAACAGTATCAATTATTTTC
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCAAAACAGTATC-ATTATTTTC
* *
1313415 AGGATTGGGAACCTA-AAACACATTTCTTTCATTAAGATACATGACATTGATGCTTTGGTGTCGT
65 AGGATTAGGAACCTATAAACACATTTCTTTCATTAAGATACATGACATTGATGCTTTGGTGTCGC
1313479 AAGAAAAGCTTTTCTTTCCTCTGTTTTTG
130 AAGAAAAGCTTTTCTTTCCTCTGTTTTTG
* * ** **
1313508 ATAGAGTCAAAGTTTGTCTTTTAAATAAGACAAACAT
1 -TAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
1313545 GAGTAGTCAT
Statistics
Matches: 370, Mismatches: 110, Indels: 62
0.68 0.20 0.11
Matches are distributed among these distances:
156 7 0.02
157 87 0.24
158 34 0.09
159 224 0.61
160 18 0.05
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (158 bp):
TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCAAAACAGTATCATTATTTTCA
GGATTAGGAACCTATAAACACATTTCTTTCATTAAGATACATGACATTGATGCTTTGGTGTCGCA
AGAAAAGCTTTTCTTTCCTCTGTTTTTG
Found at i:1315145 original size:919 final size:922
Alignment explanation
Indices: 1313686--1316148 Score: 2853
Period size: 919 Copynumber: 2.6 Consensus size: 922
1313676 CCAGTAATGA
* * * * *
1313686 TCTTCATTCATTTTGTGATTAGGTACTATAAACACATTCTCCTCATTAGAATAAATGATATTGAC
1 TCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCT-AGTAGGATAAATGATATTGAT
* *
1313751 GATTTTCTTTTGCATAAAAATCTTTT-TTTGCCCTACTTTTCTTAAAATCAAAGTTCATCCCTTA
65 GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * * ** * ** * * *
1313815 ATTAGGACGAGAATCAATTCTCGTAACAATCTCCATTCCTTCCCATGATTAGGAACCAAAAACAC
130 AATAAGACAAGCATCGATTCTCAAAACAATCTCCATT-ATTTTCAGGATTGGGAACCTAAAACAC
* * * * *
1313880 ATTCCCTTCTTTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAATAGCTTTTTCTTTCCAC
194 ATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTTCAC
* * * *
1313945 CGTTTTTTATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACTTGAACACTCATACCAAT-CCC
258 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCC
* * * * *
1314009 AATC-TTTCTAAGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATATGCGAAATTGATTTTT
323 ATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGATATTGATGTTT
* * * * * * *
1314073 TGGTTTCACAAGAAAGGCATTTTTCCTACTAACTTTTGTAAAGTCTAACCTCT-TGCCTCGAATG
387 TGGTTTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAA-GTTTATGCCTCAAATG
* * * * * * *
1314137 AGACAAAAATGGATTCTCGTAACGACCTTCATTCATTTTGTGATTAACCACTCTAAACACATTCT
451 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCT
** * *
1314202 CCTCAGTAGGATAAATGATATTGATGATTTTCTTTTAAATGGAAATCTTTTCTTTTCCCTTTTTT
516 CCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTT
* * * * * *
1314267 CCTTAAAATCAAAATTCATCCTTTAAATAAGACAAGCGTCCATTCTCAAAATAGTCTCCATAATT
581 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATT
* *
1314332 TTCAGGATTGGGAACCGAAAACACCTTCCCTTT-ATTAGGATACATGACATTGATGC-TT-TC-C
646 TTCAGGATTGGGAACCTAAAACACATT-CCTTTCATTAGGATACATGACATTGATGCTTTGTCAC
* *
1314393 -TTCCACCGTTTTTGA-AGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCTTACC
710 TTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACC
* * *
1314456 AATCCCCATTTCTTTCAGGATTAGGCACCATAAACATAGTTTTCTTTTTAAGATACGCGATATTG
775 AATCCCCATTTCTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGATATTG
*
1314521 ATGTTTTGGCTTT-GCAAGAAAGGGATTTTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATGCCT
840 ATGTTTTGG-TTTCGCAAGAAAGGCATTTTT-CCTCCAATTTTTGTAAAGTCTAAGTTCATGCCT
1314585 CAAATGAGACAAACATGGAT
903 CAAATGAGACAAACATGGAT
* * *
1314605 TCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCGAGGTAAGATAAATAATATTGAT
1 TCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTA-GTAGGATAAATGATATTGAT
* *
1314670 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCTTTA
65 GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTA
*
1314735 AATAAGACAAGCATCGATTCTTAAAACAATCTCCATTATTTTCAGGATTGGGAACCTAAAACACA
130 AATAAGACAAGCATCGATTCTCAAAACAATCTCCATTATTTTCAGGATTGGGAACCTAAAACACA
* * **
1314800 TTTCCTTCATTAGGATACATGACATTGATGCTTTTGG-GTTGTAAGAAAAGCTTTTCTTTTCATT
195 TTTCCTTCATTAGGATACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACC
* * * * * **
1314864 GTTTTTGATAGGATTAAAGTTTGTCTCTTAAATAAGACAAACATCAATAGTCATACTAATCAACA
259 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCCA
* * * * *
1314929 TTCTTTTCGGGACTAGGCACCATAAACATAGTCTACTCATT-AGAGTACGTGATATTGATGTTTT
324 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGA-TACGCGATATTGATGTTTT
** *
1314993 GGTTTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGGGAAGTCTTAGTTTATGCCTC-AATCGA
388 GGTTTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT-GA
* * * * * *
1315057 GACAAACTTGGATTCGAGTAATGATTTTCTTTCATTTTATTG-TTAGGCACTATAAACATATTCT
452 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTA-TGATTAAGCACTATAAACACATTCT
* * * * * *
1315121 CCTCAATATGATAAAT-AGTATTGATGATTTTCTTTTGCACGAAAATTTTTTCTTTGCCCTATTT
516 CCTCAGTAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTT
* * ** * ***
1315185 TTCTTAAAGTCAAAGTTCATCCAATAAATAAGACAAGCATCGATCCTTGTAACAGTCTCCATTAT
580 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTAT
* * *
1315250 TTTCAGGATTGGGAACCTAAAACATATTCCCTTCATTAGGATACACGACATTGATGCTTTGTTGT
645 TTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGC--T-TTGT
* * * * * *
1315315 CGCAAGAAAAGCTTTTTTCACCGTTTTTGATAGAATTAAAGTTCACCTCTCAAATAAGACAAACT
707 --C------A-C--TTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
* * * *
1315380 TGAATACTCCTACCGATCCCCA-TTCTTTCCTAGATTAGGCACCATAAACATTGTCTTCTCTTTA
761 TGAATACTCATACCAATCCCCATTTCTTT-CAAGATTAGGCACCATAAACATAGTCTTCTCTTTA
* * * *
1315444 AGATATGCGAAATTGATGTTTTGGTTTCACAAGAAAGGCA-TTTTCGTCACTAATTTTTGTAAAG
825 AGATACGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCTC-C-AATTTTTGTAAAG
* ** *
1315508 CCTAAGTTTGTGCCTCAAATGAGACAAAAATGGATTCTTTTAAT
888 TCTAAGTTCATGCCTCAAATGAGACAAACATGG---------AT
* * *
1315552 GGTCTTCATTCATTTTATGATTAAGCACAATAAACACATTCTCTTCAGTAGGATAAATGATATTG
1 --TCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCT-AGTAGGATAAATGATATTG
* *
1315617 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACCTTCCTTAAAATCAAAGTTTATCCCT
63 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCT
* * * * * ** * ** * *
1315682 TAAATATGATAAGAATCGATTCTCATAACAAACTGTATTCCTTCCCAAGATTGGGAACCAAAAAC
128 TAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATT-ATTTTCAGGATTGGGAACCTAAAAC
* * *
1315747 ACA-TTCCTCTCTTTAGGATACATGACATTGACGCTTTAGTGTCGCAAGAAAAGCTTTTTCTTTT
192 ACATTTCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTT
* * * *
1315811 CACCGTTCTTT-ATAGAATCAAAGTATGTCTCTTAAATAAGACAAACTTGCATACTCCTACCAAT
255 CACCGTT-TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
* * *
1315875 CCTCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATG
319 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGATATTGATG
* *
1315940 TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
384 TTTTGGTTTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
*
1316005 TGAGACAAAAATGGATTCTCA-TAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACAT
449 TGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACAT
* * *
1316069 TCTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACCCTAA
513 TCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTAT
*
1316134 TTTCCTGAAAATCAA
578 TTTCCTTAAAATCAA
1316149 TATCAAATTA
Statistics
Matches: 1290, Mismatches: 198, Indels: 80
0.82 0.13 0.05
Matches are distributed among these distances:
918 75 0.06
919 435 0.34
920 76 0.06
923 2 0.00
924 1 0.00
926 1 0.00
934 1 0.00
936 3 0.00
937 28 0.02
938 154 0.12
947 2 0.00
949 156 0.12
950 61 0.05
951 284 0.22
952 11 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (922 bp):
TCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTAGTAGGATAAATGATATTGATG
ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAA
ATAAGACAAGCATCGATTCTCAAAACAATCTCCATTATTTTCAGGATTGGGAACCTAAAACACAT
TTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGT
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCCATT
CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGATATTGATGTTTTGGT
TTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACA
AACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCTCCTCA
GTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTA
AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAG
GATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGTCACTTTCCA
CCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACCAATCCC
CATTTCTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGATATTGATGTTT
TGGTTTCGCAAGAAAGGCATTTTTCCTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
ACAAACATGGAT
Found at i:1315948 original size:478 final size:473
Alignment explanation
Indices: 1314396--1316148 Score: 2160
Period size: 473 Copynumber: 3.7 Consensus size: 473
1314386 GCTTTCCTTC
*
1314396 CACCGTTTTTGA-AGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCTTACCAATC
1 CACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
* * *
1314460 CCCATTTCTTT-CAGGATTAGGCACCATAAACATAGTTTTCTTTTTAAGATACGCGATATTGATG
66 CCCA-TTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATG
* * * * *
1314524 TTTTGGCTTT-GCAAGAAAGGGATTTTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
130 TTTTGG-TTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
* *
1314588 ATGAGACAAACATGG-------AT--TCTTCATTCATTTTGTGATTAAGCACTATAAACACATTC
194 ATGAGACAAAAATGGATTCTTAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTC
* * *
1314644 TC--CGAGGTAAGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAC
259 TCTTC-A-GTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAC
* *
1314707 TTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTTAAAACAATCTCCATT
322 TTTCCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATT
1314772 ATTTTCAGGATTGGGAACCTAAAACACATTTCCT-TCATTAGGATACATGACATTGATGCTTTTG
387 ATTTTCAGGATTGGGAACCTAAAACACA-TTCCTCTCATTAGGATACATGACATTGATGC-TTTG
* * *
1314836 GGTTGTAAGAAAAGCTTTTCTTTT
450 TGTCGCAAGAAAAGCTTTTCTTTT
** * * ** * * * *
1314860 CATTGTTTTTGATAGGATTAAAGTTTGTCTCTTAAATAAGACAAACATCAATAGTCATACTAATC
1 CACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
** * * * * * * *
1314925 AACATTCTTTTCGGGACTAGGCACCATAAACATAGTCTACTCATT-AGAGTACGTGATATTGATG
66 CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGA-TACGCGAAATTGATG
* * ** *
1314989 TTTTGGTTTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGGGAAGTCTTAGTTTATGCCTC-AA
130 TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
** * * * * *
1315053 TCGAGACAAACTTGGATTCGAGTAATGATTTTCTTTCATTTTATTG-TTAGGCACTATAAACATA
195 T-GAGACAAAAATGGATTC--TTAATGATCTTCATTCATTTTA-TGATTAAGCACTATAAACACA
* * * * *
1315117 TTCTCCTCAATATGATAAAT-AGTATTGATGATTTTCTTTTGCACGAAAATTTTTTCTTTGCCCT
256 TTCTCTTCAGTAGGATAAATGA-TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * * * * *
1315181 ATTTTTCTTAAAGTCAAAGTTCATCCAATAAATAAGACAAGCATCGATCCTTGTAACAGTCTCCA
320 ACTTTCCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCA
* *
1315246 TTATTTTCAGGATTGGGAACCTAAAACATATTCC-CTTCATTAGGATACACGACATTGATGCTTT
385 TTATTTTCAGGATTGGGAACCTAAAACACATTCCTC-TCATTAGGATACATGACATTGATGCTTT
1315310 GTTGTCGCAAGAAAAGC--TT-TTTT
449 G-TGTCGCAAGAAAAGCTTTTCTTTT
* * * * *
1315333 CACCGTTTTTGATAGAATTAAAGTTCACCTCTCAAATAAGACAAACTTGAATACTCCTACCGATC
1 CACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
* *
1315398 CCCATTCTTTCCTA-GATTAGGCACCATAAACATTGTCTTCTCTTTAAGATATGCGAAATTGATG
66 CCCATTCTTTCC-AGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATG
* * *
1315462 TTTTGGTTTCACAAGAAAGGCA-TTTTCGTCACTAATTTTTGTAAAGCCTAAGTTTGTGCCTCAA
130 TTTTGGTTTCGCAAGAAAGGCATTTTTC-TCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
* *
1315526 ATGAGACAAAAATGGATTCTTTTAATGGTCTTCATTCATTTTATGATTAAGCACAATAAACACAT
194 ATGAGACAAAAATGGATTC--TTAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACAT
1315591 TCTCTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAC
257 TCTCTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAC
* * * * * * * * **
1315656 CTTCCTTAAAATCAAAGTTTATCCCTTAAATATGATAAGAATCGATTCTCATAACAAACTGTATT
322 TTTCCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATT
* ** * * * *
1315721 CCTTCCCAAGATTGGGAACCAAAAACACATTCCTCTCTTTAGGATACATGACATTGACGCTTTAG
387 -ATTTTCAGGATTGGGAACCTAAAACACATTCCTCTCATTAGGATACATGACATTGATGCTTT-G
1315786 TGTCGCAAGAAAAGCTTTTTCTTTT
450 TGTCGCAAGAAAAGC-TTTTCTTTT
* * *
1315811 CACCGTTCTTT-ATAGAATCAAAGTAT-GTCTCTTAAATAAGACAAACTTGCATACTCCTACCAA
1 CACCGTT-TTTGATAGAATCAAAGT-TCATCTCTTAAATAAGACAAACATGAATACTCCTACCAA
*
1315874 TCCTCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGAT
64 TCCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGAT
1315939 GTTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
129 GTTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
1316004 ATGAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACAT
194 ATGAGACAAAAATGGATTCT--TAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACAT
*
1316069 TCTCCTT-AGTAGGATAAATGATATTGATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTACCCT
257 TCT-CTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCT
* *
1316132 AATTTCCTGAAAATCAA
320 ACTTTCCTTAAAATCAA
1316149 TATCAAATTA
Statistics
Matches: 1101, Mismatches: 144, Indels: 74
0.83 0.11 0.06
Matches are distributed among these distances:
464 25 0.02
465 150 0.14
472 7 0.01
473 307 0.28
474 77 0.07
475 11 0.01
476 203 0.18
477 7 0.01
478 302 0.27
479 12 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
CACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGT
TTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT
GAGACAAAAATGGATTCTTAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCTC
TTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTC
CTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTATTT
TCAGGATTGGGAACCTAAAACACATTCCTCTCATTAGGATACATGACATTGATGCTTTGTGTCGC
AAGAAAAGCTTTTCTTTT
Found at i:1316185 original size:151 final size:151
Alignment explanation
Indices: 1316000--1316299 Score: 501
Period size: 151 Copynumber: 2.0 Consensus size: 151
1315990 AGTTTATGCC
*
1316000 TCAAATGAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
1 TCAAATGAGACAAAAATGGATTCTCATAAAGATCTTCATTCATTTTATGATTAAGCACTATAAAC
*
1316065 ACATTCTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
1316130 CTAATTTCCTGAAAATCAATA
131 CTAATTTCCTGAAAATCAATA
* * ** *
1316151 TCAAATTAGACAAACATGGATTCTTGTAAAGATCTTCATTCATTTTATGATTAAGCCCTATAAAC
1 TCAAATGAGACAAAAATGGATTCTCATAAAGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* *
1316216 ATATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
* *
1316281 CTATTTTCCTTAAAATCAA
131 CTAATTTCCTGAAAATCAA
1316300 AGTTCATATC
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 138 1.00
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (151 bp):
TCAAATGAGACAAAAATGGATTCTCATAAAGATCTTCATTCATTTTATGATTAAGCACTATAAAC
ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
CTAATTTCCTGAAAATCAATA
Found at i:1317236 original size:33 final size:33
Alignment explanation
Indices: 1317182--1317244 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
1317172 TGGGATAATG
** *
1317182 TATCGATACAATTCGTTATGTATTGATACATTA
1 TATCGATACAATTCGCCATGTATCGATACATTA
1317215 TATCGATACAATGT-GCCATGTATCGATACA
1 TATCGATACAAT-TCGCCATGTATCGATACA
1317245 AACAGTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (33 bp):
TATCGATACAATTCGCCATGTATCGATACATTA
Found at i:1317299 original size:20 final size:19
Alignment explanation
Indices: 1317274--1317366 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 19
1317264 CTGCTAGTTT
* *
1317274 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGA-A
1317294 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
1317313 CATGTATCGATACAA--AA
1 CATGTATCGATACAATGAA
* *
1317330 CATAATGTATCGATACATCTGGA
1 C---ATGTATCGATACA-ATGAA
*
1317353 TATGTATCGATACA
1 CATGTATCGATACA
1317367 TACAAGGGTT
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
17 3 0.05
19 15 0.24
20 43 0.69
23 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:1319116 original size:475 final size:474
Alignment explanation
Indices: 1317636--1320715 Score: 3304
Period size: 475 Copynumber: 6.5 Consensus size: 474
1317626 GATCCTAACA
* *
1317636 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * ****
1317701 -CCCTATTCTTTGCAATAGTAGGGACCATAAACATAGTCTGCTCTTTAAG-ATAGGTAATATTGA
66 CCCCT-TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATACACGATATTGA
* *** * ** *
1317764 TGTTTTGGTTTCGTAAGAAAAACATTTTTCCCACCAATTTTTCTAAAGTCTATTTTCGTGCCTCA
129 TGCTTTGGTTTCGTAAG-AAAGGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * *
1317829 AATTAGACAAACA-AGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGGA-ACTATTAACG
193 AATAAGACAAACATA-GATTCTAGTAACGATCTTCATTCATTTTGTGATTA-GACACTATAAACA
* * * * *
1317892 CATTCAT-CTTAGTAGGATAAA-CATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTACC
256 CATTC-TCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * *
1317955 TTATTTTCCTTTAAATCAAAGTTCACCCCTTAAA-AATGACAAGCATCGATTCTCAAAACAGTCT
320 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA-GACAAGCATCGATTCTCAAAA-AGTCT
* * * *
1318019 CCATTATTTTCAAGATTGGGAACCTAAAATACATTCCCTTTACTAGGATACATGACATTGAGGCT
383 CCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1318084 TTGGTGTCACAAGAAAAGCTTTTCTTT
448 TTGGTGTCACAAGAAAAGCTTTTCTTT
** * * * * *
1318111 CCACTATTTTTGATAGAATCAAATTTTTTTTCTTAAATAAGATAAACATGAATAGTCAAACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * *
1318176 CCCTATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACACGATATTGAT
66 CCC-CTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGAT
* * * * * * * * *
1318241 GCTTTGCTTTCATATGTATGAGTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTCGTGCCTTAA
130 GCTTTGGTTTCGTAAGAAAG-GTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * ** * * *
1318306 ATGAGACAAACATTGATTATAGTAATAATCTTCATTCATTTTGTGATTAGGCACCATAAACATAT
194 ATAAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACAT
* * *
1318371 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTAC
259 TCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * *
1318436 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCGTAACAA-TCTCCAT
324 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC--AAAAAGTCTCCAT
* * * * *
1318500 TCTTTCCTAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
387 TATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * **
1318565 TGTCGCAAGAAAAGGTTTTCACT
452 TGTCACAAGAAAAGCTTTTCTTT
* * * * *
1318588 CCACCGTTTCTAATAAAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* *
1318653 CCCCTTTATTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGGTG
66 CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGATG
* * * * *
1318718 CTTTGGATTCGTAAGAAAGGTTTTTTTCCCACCAATTATTATAAACTCTAAGTTCATGCCACAAA
131 CTTTGGTTTCGTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * **** * *
1318783 CAAAACAAACATAGATTCTAGCGGTGATCTTCATCCATTTTGTGACTAGACACTATAAACACATT
195 TAAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACATT
* * *
1318848 CTCCTTAGTAGGATAAATGATATTGATGATTTT-TTTTGCTTGAAAATTTTTTCTTTGCCCTATT
260 CTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * *
1318912 TTCCCTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCGATTCTTAAAAGAGTCTCCATTA
325 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAA-AGTCTCCATTA
* *
1318977 TTTTCAAGATTGGGAACCCAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
389 TTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
1319042 TCACAAGAAAAGCTTTTCTTT
454 TCACAAGAAAAGCTTTTCTTT
*** * * * * *
1319063 CCACCGTTTTTGATAGAATCAAAGTTCACCT-TTGAAACAAGAAAAAGATGAATACTCATACCAA
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATAGTCATACTAA
** * * * **
1319127 TCCCCAGTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTA-TGATATGCGATATTGA
65 TCCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGT-ATACACGATATTGA
* * ** *
1319191 TGTTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAATTTTTGTGAAGTCTAAGTTCATGCCTCAA
129 TGCTTTGGTTTCGTAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * * * * *
1319256 TTTAGGCAAACATGGATTCTTGTAACGATCTTCATTCAATTTATGATTA-AGCACTATACACACA
194 ATAAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGA-CACTATAAACACA
* *
1319320 TTCTCCTCAGTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTA
258 TTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * * *
1319385 TTTT-TTGTAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCAAAACAGTCTCAA
323 TTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAA-AGTCTCCA
*
1319449 TTATTTTCAAGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTG
386 TTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
*
1319514 GTGTCATAAGAAAAGCTTTTCTTT
451 GTGTCACAAGAAAAGCTTTTCTTT
** *
1319538 CCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * **
1319603 CACCTTTCTTTTCGAGACTAGGCACCAAAAAGATAGTCTTCTCATTATGATATGTA--ATATTGA
66 CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA-TAAG-TATACACGATATTGA
* * * *** * * * * *
1319666 TGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTCCATGAAGTATAAGTCCTTGCCTTA
129 TGCTTTGGTTTCGTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * * * *
1319731 GATGAGATAAAAATGGATTCTAGTAACGATCTTCATTCATTTTTTGGTTA-AGCACTAT-AACAC
193 AATAAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGA-CACTATAAACAC
* * *
1319794 CTTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCCT-AGAAATCTTTTCTTTGGCC
257 ATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCC
* * * * * *
1319858 TATATTCTTTAAAATCAAAGTTCATCCCTCAAAAAAGCCAAGCATCAATTCTCAAAATAGTCTCC
321 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAA-AGTCTCC
* *
1319923 ATTATTTTCCAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC-TATGAGGCTT
385 ATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT-TGATGCTT
*
1319987 TGGTGTTACAAGAAAAGCTTTTCTTT
449 TGGTGTCACAAGAAAAGCTTTTCTTT
* * * *
1320013 CCACTGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * * * * * *
1320078 CCCCATTCTTTTTAGGATTAGGTACCAAAAACGTGGTCTTCTAATAAGGATACACGATATTGGTA
66 CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGATG
* * ** * * * *
1320143 CTTTGGTTTCATATGAAAGGGTTTCATCCCACTAGTTTTTGTAAAATCTAAGTTCACGCCTCAAA
131 CTTTGGTTTCGTAAGAAA-GGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-AA
* * *
1320208 ATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
194 ATAAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACAT
** * * *
1320273 TCTTTTCACTAGGATAAATGATATTAATGA-TTT-TTTTGCATGGAAATCTTTTCTTTGCCCTAC
259 TCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA-
* * * *
1320336 CTTT-CTTAAAATCAAAGTTCATCCCTTAAATATGACAGGAATCGATTCTCGTAACAAA--CTCC
323 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC--AA-AAAGTCTCC
* ** * *
1320398 ATTCCTTCCCAAGATTGGGAACCAAAAACACATT-CC-TCTATTTAGGATACATGACATTGACGC
385 ATT-ATTTTCAAGATTGGGAACCTAAAACACATTCCCTTC-A-TTAGGATACATGACATTGATGC
*
1320461 TTTGGTGTCGCAAGAAAAGCTTTTTCTTT
447 TTTGGTGTCACAAGAAAAGC-TTTTCTTT
* * * * * * * *
1320490 CCACCGTTTTTTATAGAATCAGAG--TGTTTCTTAAATAAGACAAACTTGAACACTCCTACCAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * ** * *
1320553 CCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTATTCTCTTTAA-AATACGTGAAATTTAT
66 CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATACACGATATTGAT
* * * * * * * *
1320617 GTTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGAAAAGCCTAAGTTCGTGCCTCAA
130 GCTTTGGTTTCGTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * *
1320682 ATGAGACAAA-ATGGATTCTCGTAAAGATCTTCAT
194 ATAAGACAAACATAGATTCTAGTAACGATCTTCAT
1320716 ATTGATGATT
Statistics
Matches: 2171, Mismatches: 389, Indels: 92
0.82 0.15 0.03
Matches are distributed among these distances:
473 28 0.01
474 140 0.06
475 1154 0.53
476 552 0.25
477 288 0.13
478 6 0.00
479 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGATG
CTTTGGTTTCGTAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
AAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTC
TCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAAAGTCTCCATTATT
TTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
ACAAGAAAAGCTTTTCTTT
Found at i:1319628 original size:950 final size:943
Alignment explanation
Indices: 1317636--1320715 Score: 3664
Period size: 950 Copynumber: 3.2 Consensus size: 943
1317626 GATCCTAACA
1317636 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
* * * * * * *
1317701 -CCCTATTCTTTGCAATAGTAGGGACCATAAACATAGTCTGCTCTTTAAG-ATAGGTAATATTGA
66 CCCCT-TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATA--CAATATTGA
** * ** *
1317764 TGTTTTGGTTTCGTAAGAAAAACATTTTTCCCACCAATTTTTCTAAAGTCTATTTTCGTGCCTCA
127 TGTTTTGGTTTCGTAAGAAAGGCATTTTTCCCACCAA-TTTTATAAAGTCTAAGTTCATGCCTCA
* *
1317829 AATTAGACAAACA-AGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGGA-ACTATTAACG
191 AATAAGACAAACATA-GATTCTAGTAACGATCTTCATTCATTTTCTGATTA-GACACTA-TAACA
* * *
1317892 CATTCAT-CTTAGTAGGATAAA-CATATTGATGATTTTCTTTTG-TATGGAAATCTTTTCTTTAC
253 CATTC-TCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCT-TGAAAATCTTTTCTTTGC
* * * *
1317954 CTTATTTTCCTTTAAATCAAAGTTCACCCCTTAAAAATGACAAGCATCGATTCTCAAAACAGTCT
316 CCTATTTTCCTTAAAATCAAAGTTCATCCCTCAAAAA-GACAAGCATCGATTCTCAAAACAGTCT
* * *
1318019 CCATTATTTTCAAGATTGGGAACCTAAAATACATTCCCTTTACTAGGATACATGACATTGAGGCT
380 CCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCT
* * *
1318084 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAATTTTTTTTCTTAAAT
445 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAA-TTTATCT-TTAAAT
* * * *
1318149 AAGATAAACATGAATAGTCAAACTAATCCCTATTTTTTTTCAGGATTAGGCACCATAAACATAGT
508 AAGAAAAACATGAATAGTCATACTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * *
1318214 CTTTTCATAAGGATACACGATATTGATGCTTTGCTTTCATATGTATGAGTTTCTTCCCACCAATT
572 CTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCATATGAAAG-GATT-TTCCCACCAATT
* * * * *
1318279 TTTGTAAAATCTAAGTTCGTGCCTTAAATGAGACAAACATTGATTATAGTAATAATCTTCATTCA
635 TTTGTAAAATCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCA
* * *
1318344 TTTTGTGATTAGGCACCATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
700 TTTTGTGATTAGGCACTATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTT
* *
1318409 TGCACGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
765 TGCATGAAAATCTTTTCTTTGCCCTACTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *
1318474 GAATCAATTCTCGTAACAATCTCCATTCTTTCCTAGATTGGGAACCAAAAACATATTCCCTTCAT
830 GAATCGATTCTCGTAACAATCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCAT
* **
1318539 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCACT
895 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
1318588 CCACCGTTTCTAATAAAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
* *
1318653 CCCCTTTATTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGGTG
66 CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACA--ATATTGATG
* * ** * *
1318718 CTTTGGATTCGTAAGAAAGGTTTTTTTCCCACCAATTATTATAAACTCTAAGTTCATGCCACAAA
129 TTTTGGTTTCGTAAGAAAGGCATTTTTCCCACCAATT-TTATAAAGTCTAAGTTCATGCCTCAAA
* * **** * * *
1318783 CAAAACAAACATAGATTCTAGCGGTGATCTTCATCCATTTTGTGACTAGACACTATAAACACATT
193 TAAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGACACTAT-AACACATT
*
1318848 CTCCTTAGTAGGATAAATGATATTGATGATTTT-TTTTGCTTGAAAATTTTTTCTTTGCCCTATT
257 CTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATT
* * *
1318912 TTCCCTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCGATTCTTAAAAGAGTCTCCATTA
322 TTCCTTAAAATCAAAGTTCATCCCTCAAA-AAGACAAGCATCGATTCTCAAAACAGTCTCCATTA
* * *
1318977 TTTTCAAGATTGGGAACCCAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
386 TTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTGGTG
* * * *
1319042 TCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCACCTTTGAAACAAGAAA
451 TCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAA-TTTATCTTT-AAATAAGAAA
* * * * *
1319107 AAGATGAATACTCATACCAATCCCCAGTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCT
514 AACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * ** * ** * *
1319172 TTATGATATGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAATTTTTGTGAA
579 TAAGGATACACGATATTGATGCTTTGGTTTCATATGAAAGG-ATTTTCCCACCAATTTTTGTAAA
* * * * * * * * *
1319237 GTCTAAGTTCATGCCTCAATTTAGGCAAACATGGATTCTTGTAACGATCTTCATTCAATTTATGA
643 ATCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * *
1319302 TTAAGCACTATACACACATTCTCCTCAGTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAA
708 TTAGGCACTATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCATGAA
* * * * *
1319367 AATCTTTTCTTTACCCTA-TTTTTTGTAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTGA
773 AATCTTTTCTTTGCCCTACTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGA
** * * * * *
1319431 TTCTCAAAACAGTCTCAATTATTTTCAAGATTGGGAACCTAAAACACATTCCTTTCATTAGGATA
837 TTCTCGTAACAATCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
**
1319496 CATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTT
902 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
** * * *
1319538 CCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
* * * * * * **
1319603 CACCTTTCTTTTCGAGACTAGGCACCAAAAAGATAGTCTTCTCATTATGATATGTAATATTGATG
66 CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA-TAAG-TATACAATATTGATG
* * * * * * * *
1319668 TTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTCCATGAAGTATAAGTCCTTGCCTTAGA
129 TTTTGGTTTCGTAAGAAAGGCATTTTTCCCACCAATTT-TATAAAGTCTAAGTTCATGCCTCAAA
* * * * * * *
1319733 TGAGATAAAAATGGATTCTAGTAACGATCTTCATTCATTTTTTGGTTA-AGCACTATAACACCTT
193 TAAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGA-CACTATAACACATT
* * *
1319797 CTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCCT-AGAAATCTTTTCTTTGGCCTAT
257 CTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCTTGA-AAATCTTTTCTTTGCCCTAT
* * * * *
1319861 ATTCTTTAAAATCAAAGTTCATCCCTCAAAAAAGCCAAGCATCAATTCTCAAAATAGTCTCCATT
321 TTTCCTTAAAATCAAAGTTCATCCCTC-AAAAAGACAAGCATCGATTCTCAAAACAGTCTCCATT
*
1319926 ATTTTCCAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC-TATGAGGCTTTGG
385 ATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT-TGAGGCTTTGG
*
1319990 TGTTACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGA
449 TGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATC-AAATTTATCT-TTAAATAAGA
* * * * * * *
1320055 CAAACTTGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGTACCAAAAACGTGGTCTTCT
512 AAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * *
1320120 AATAAGGATACACGATATTGGTACTTTGGTTTCATATGAAAGGGTTTCATCCCACTAGTTTTTGT
577 CATAAGGATACACGATATTGATGCTTTGGTTTCATATGAAAGGATTT--TCCCACCAATTTTTGT
*
1320185 AAAATCTAAGTTCACGCCTCAAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTT
640 AAAATCTAAGTTCATGCCTC-AAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTT
** *
1320250 GTGATTAGGCACTATAAACACATTCTTTTCACTAGGATAAATGATATTAATGA-TTT-TTTTGCA
704 GTGATTAGGCACTATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * *
1320313 TGGAAATCTTTTCTTTGCCCTACCTTTCTTAAAATCAAAGTTCATCCCTTAAATATGACAGGAAT
769 TGAAAATCTTTTCTTTGCCCTACTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAAT
* * *
1320378 CGATTCTCGTAACAAACTCCATTCCTTCCCAAGATTGGGAACCAAAAACACATTCCTCT-ATTTA
834 CGATTCTCGTAACAATCTCCATT-CTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCA-TTA
*
1320442 GGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCTTT
897 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTT
* * * * * *
1320490 CCACCGTTTTTTATAGAATCAGAG--TGTTTCTTAAATAAGACAAACTTGAACACTCCTACCAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
* * * * * * *
1320553 CCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTATTCTCTTTAA-AATACGTGAA-ATTTA
66 CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATAC---AATATTGA
* * * * *
1320616 TGTTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTT-TGAAAAGCCTAAGTTCGTGCCTC
127 TGTTTTGGTTTCGTAAGAAAGGCATTTTTCCCACCAATTTTAT--AAAGTCTAAGTTCATGCCTC
* * * *
1320680 AAATGAGACAAA-ATGGATTCTCGTAAAGATCTTCAT
190 AAATAAGACAAACATAGATTCTAGTAACGATCTTCAT
1320716 ATTGATGATT
Statistics
Matches: 1789, Mismatches: 301, Indels: 79
0.82 0.14 0.04
Matches are distributed among these distances:
948 3 0.00
949 72 0.04
950 953 0.53
951 198 0.11
952 541 0.30
953 22 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (943 bp):
CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
CCCCTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACAATATTGATGTT
TTGGTTTCGTAAGAAAGGCATTTTTCCCACCAATTTTATAAAGTCTAAGTTCATGCCTCAAATAA
GACAAACATAGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGACACTATAACACATTCTCC
TTAGTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAAAGTTCATCCCTCAAAAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTC
AAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTGGTGTCACA
AGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAATTTATCTTTAAATAAGAAAAACATGA
ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
ACACGATATTGATGCTTTGGTTTCATATGAAAGGATTTTCCCACCAATTTTTGTAAAATCTAAGT
TCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
TATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTT
CTTTGCCCTACTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGATTCTCGTAA
CAATCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATT
GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
Found at i:1321093 original size:422 final size:421
Alignment explanation
Indices: 1320293--1321138 Score: 1026
Period size: 422 Copynumber: 2.0 Consensus size: 421
1320283 AGGATAAATG
*
1320293 ATATTAATGATTTTTTTGCATGGAAATCTTTTCTTTGCCCTACCTTTCTTAAAATCAAAGTTCAT
1 ATATTAATGATTTTTTTGCATGGAAATCTTTTCTTTACCCTACCTTTCTTAAAATCAAAGTTCAT
* * * * ** *
1320358 CCCTTAAATATGACAGGAATCGATTCTCGTAACAAACTCCATTCCTTCCCAAGATTGGGAACCAA
66 CCCTTAAAAAAGACAAGAATCGATTCCCAAAACAAACTCCATTACTTCCCAAGATTGGGAACCAA
1320423 AAACACATTCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCT
131 AAACACATTCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCT
* * * *
1320488 TTCCACCGTTTTTTATAGAATCAGAGTGTTTCTTAAATAAGACAAACTTGAACACTCCTACCAAT
196 TTCCACCGTTTTTGATAGAATCAAAATGTTTCTTAAATAAGACAAACTTCAACACTCCTACCAAT
* * ** *
1320553 CCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTATTCTCTTTAAAATACGTGAAATTTATG
261 CCCCATTCTTTCCAGAATTAGGCACCATAAACATAGTATTCTCTATAAAATACACGAAATTGATG
* * * * *
1320618 TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGAAAAGCCTAAGTTCGTGCCTCAAA
326 CTTTGGTTTCACAAGAAAGG-ATTTATCCCACTAATTTTTGAAAAGCCTAAGTTCGTACCTCAAA
* *
1320683 TGAGACAAA-ATGGATTCTCGTAAAGATCTTC
390 TGAGACAAACATGGATTCTAGTAAAAATCTTC
* * **
1320714 ATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTATCCTATTTTTCTTAAAATCAAAGTTCA
1 ATATTAATGA-TTTTTTTGCATGGAAATCTTTTCTTTACCCTACCTTTCTTAAAATCAAAGTTCA
* * * ** * * * * *
1320779 TCCCTTAAAAAAGGCAAGCATCGATTCCCAAAATAGTCTCCTTTATTTTCC-GGATTGGGAACCT
65 TCCCTTAAAAAAGACAAGAATCGATTCCCAAAACAAACTCCATTACTTCCCAAGATTGGGAACCA
* *
1320843 AAAACACATTCC-CTTTATTAGGATACATGAC-TATGAGGCTTTGGTGTCGCAAGAAAAGC-TTT
130 AAAACACATTCCTCTAT-TTAGGATACATGACAT-TGACGCTTTGGTGTCGCAAGAAAAGCTTTT
* * *
1320905 TCTTTCCACCGTTTTTGATAGAATCAAAATTTACTTCTTAAATAAGACAAACTTCAATAGTCAC-
193 TCTTTCCACCGTTTTTGATAGAATCAAAATGT--TTCTTAAATAAGACAAACTTCAACACTC-CT
* * * * * * *
1320969 ACTAATCCGCATTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTC-ATAATGATACACGAT
255 ACCAATCCCCATTCTTTCCAGAATTAGGCACCATAAACATAGTATTCTCTATAA-AATACACGAA
* * * * *
1321033 ATTGATGCTTTGGTTTCATATGAAAAGG-TTTCATCCCCCTAGTTTTTGTAAAA-TCTAAGTTCG
319 ATTGATGCTTTGGTTTCACAAG-AAAGGATTT-ATCCCACTAATTTTTG-AAAAGCCTAAGTTCG
*
1321096 TACCTCAAATGAGACAAACGTGGATTCTAGTAAAAATCTTC
381 TACCTCAAATGAGACAAACATGGATTCTAGTAAAAATCTTC
1321137 AT
1 AT
1321139 TCATTTTGTG
Statistics
Matches: 358, Mismatches: 56, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
420 35 0.10
421 77 0.22
422 215 0.60
423 31 0.09
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (421 bp):
ATATTAATGATTTTTTTGCATGGAAATCTTTTCTTTACCCTACCTTTCTTAAAATCAAAGTTCAT
CCCTTAAAAAAGACAAGAATCGATTCCCAAAACAAACTCCATTACTTCCCAAGATTGGGAACCAA
AAACACATTCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCT
TTCCACCGTTTTTGATAGAATCAAAATGTTTCTTAAATAAGACAAACTTCAACACTCCTACCAAT
CCCCATTCTTTCCAGAATTAGGCACCATAAACATAGTATTCTCTATAAAATACACGAAATTGATG
CTTTGGTTTCACAAGAAAGGATTTATCCCACTAATTTTTGAAAAGCCTAAGTTCGTACCTCAAAT
GAGACAAACATGGATTCTAGTAAAAATCTTC
Found at i:1322064 original size:476 final size:474
Alignment explanation
Indices: 1320714--1323638 Score: 2807
Period size: 476 Copynumber: 6.2 Consensus size: 474
1320704 AAAGATCTTC
* ** *
1320714 ATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTATCCTATTTTTCTTAAAATCAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * * ** *
1320778 ATCCCTTAAAAAAGGCAAGCATCGATTCCCAAAATAGTCTCCTTTATTTTCCGGATTGGGAACCT
66 ATCCCTTAAAAAAGACAAGCATCAATTCTCAAAACAATCTCCATTATTTTCAAGATTGGGAACCA
* *
1320843 AAAACACATTCCCTTTATTAGGATACATGAC-TATGAGGCTTTGGTGTCGCAAGAAAAGCTTTTC
131 AAAACACATTCCCTTCATTAGGATACATGACAT-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * *
1320907 TTTCCACCGTTTTTGATAGAATCAAAATTTA-CTTCTTAAATAAGACAAACTTCAATAGTCACAC
195 TTTCCACCGTTTTTGATAGAATCAAAATTTATC-TCTTAAATAAGACAAACATGAATACTCATAC
* * * * *
1320971 TAATCCGCATTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAATGATACACGATATT
259 CAATCC-CATTTTTTTAAG-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACGCAATATT
* * *
1321036 GATGCTTTGGTTTCATATGAAA-A-GGTTTCATCC-CCCTAGTTTTTGTAAAATCTAAGTTCGTA
322 GATGCTTTGGTTTCATATGAAAGACGATTT--TCCTACC-AATTTTTGTAAAATCTAAGTTCGTA
** ** * *
1321098 CCTCAAATGAGACAAACGTGGATTCTAGTAAAAATCTTCATTCATTTTGTGATTAAGCACTATAA
384 CCTCAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAAGAACTATAA
* *
1321163 ACACATTCTTCTCACTAGGATAAATG
449 ACACATTCTCCTCAGTAGGATAAATG
* * * *
1321189 ATATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTG
1 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * ** * ** *
1321254 ATCCCTTGAATAAGACAAGGATCAATTCTCGTAACAATCTCCATTCCTTCCCAAGATTGGGAACT
66 ATCCCTTAAAAAAGACAAGCATCAATTCTCAAAACAATCTCCATT-ATTTTCAAGATTGGGAACC
* * * *
1321319 AAAAACACATTCCTTTCTTTAGGATACATGACATTGGTGCTTTCGTGTCGCAAGAAAAGCTTTTT
130 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTT
* * ** * * * *
1321384 CTATCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATATGACAAGCTTGAATACTCCTAC
194 CTTTCCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAACATGAATACTCATAC
* *
1321449 CAATCGCCATTTTTTCTAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGG-TACGCGAA-A
259 CAATC-CCATTTTTT-TAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACGC-AATA
* ** * * * * * * * **
1321512 TTGATGTTTTGGTTTCGCAAGAATGGC-ATTTTCCCTACTAAGTTTTGTAAAGTCTAAATTAATA
320 TTGATGCTTTGGTTTCATATGAAAGACGATTTT-CCTACCAATTTTTGTAAAATCTAAGTTCGTA
* * * ** *
1321576 CCTCAGATGAGACAAA-AATAGATTCTCA-TAACGACCTTTGTTCATTTTGTGATTAA-ACACTA
384 CCTCAAATGAGACAAACAA-GGATTCT-AGTAACGATCTTCATTCATTTTCTGATTAAGA-ACTA
* * *
1321638 TAAACACATTCTCCTTAGTAGAATTAATG
446 TAAACACATTCTCCTCAGTAGGATAAATG
* * * * * *
1321667 ATATTAATGATTTTTTTTTGCACGAAAATC-TCTCATTTGCCGTATTTTCCTTAAAATCAAAATT
1 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAGTT
** ** * * * * * *
1321731 CATCCCTTAAACCAGACAAGTGTCAATTTTCAAAATAGTCTCTATTATTTTTAGGATTGGGAACC
65 CATCCCTTAAAAAAGACAAGCATCAATTCTCAAAACAATCTCCATTATTTTCAAGATTGGGAACC
* * * *
1321796 GAAAACACCTTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTCC
130 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* ** * *
1321861 TTTCTATTGTTTTTGATAGAATCAAAATTCATCTCTTAAATAAGACAAACAAGAATACTCATACC
195 TTTCCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAACATGAATACTCATACC
* * * *
1321926 AATCCCAATTCTTTTTAATATTGGGGACCATAAACATAGTCTTCTCTTTAA-GAT-CTGCAATAT
260 AATCCC-ATT-TTTTTAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATAC-GCAATAT
* * * * * * *
1321989 CGATGTTTTGGTTTTGC-GA-GAAAGACAATTTTCCTACCAATTTTTGTAAAGTCTAAGTCCGTG
321 TGATGCTTTGG-TTT-CATATGAAAGACGATTTTCCTACCAATTTTTGTAAAATCTAAGTTCGTA
* * *
1322052 CCTTAAATGAGACAAATAAGGATTCTAGTAGCGATCTTCATTCATTTTCTGATTAAGAACTATAA
384 CCTCAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAAGAACTATAA
*
1322117 ACACATTCTCCTCAGTAGGATAATTG
449 ACACATTCTCCTCAGTAGGATAAATG
* * *
1322143 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTTTTTTCCTTAAAATCAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * *
1322208 ATCCCTTAAAAAAGATAAGCATCTATTCTCAAAACAATCTCCATTATTTTCAAGATTGGGAACCT
66 ATCCCTTAAAAAAGACAAGCATCAATTCTCAAAACAATCTCCATTATTTTCAAGATTGGGAACCA
* * * * * * *
1322273 AAAACACATTCCCTTCATTAAGATACGTGACATTAAGGCTTTGGTGTCACAAGAAAA-TTTTTCC
131 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * *
1322337 TTCCACCATTTTGGATAGAATGAAAATTTTTCTCTTAAATACAG-CAAATATGAATAGTCATACT
196 TTCCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATA-AGACAAACATGAATACTCATACC
** * * * * *
1322401 AATCCCCATTCTTTCCAGGATTAGGCACCATAAACATGGTCTTCTCATAAGGATGCACGATATTG
260 AAT-CCCATT-TTTTTAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACGCAATATTG
* * * ** * **
1322466 ATGCTTTCGTTTCATATGAAAG-GGTTTCTTCCCCCCAAATTTTGTAAAATCTAAGTTCGTGGCT
323 ATGCTTTGGTTTCATATGAAAGACGATT-TTCCTACCAATTTTTGTAAAATCTAAGTTCGTACCT
*
1322530 TAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAAGAACTATAAACA
387 CAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAAGAACTATAAACA
1322595 CATTCTCCTCAGTAGGATAAATG
452 CATTCTCCTCAGTAGGATAAATG
* * *
1322618 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGCTC
1 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * ** * **
1322683 ATCCCTTAAATAAGACAAGAATCGATTCTCGTAACATTCTCCA-TACCTTCCCAA-ATTGGGAAC
66 ATCCCTTAAAAAAGACAAGCATCAATTCTCAAAACAATCTCCATTA--TTTTCAAGATTGGGAAC
1322746 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
129 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * *
1322811 CTTTCCACCGATTTTGATAGAATCAAAATTTGTCTCCTAAAT---A-AAAC---AA-AGT--T--
194 CTTTCCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAACATGAATACTCATAC
* * * * * * * *
1322864 GAAT---A---GTTCAAGGTTTGGCACCATAAACATAGTCTTCT--T-AGGATATGCGATCTTGA
259 CAATCCCATTTTTTTAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACGCAATATTGA
* ** * * * * * *
1322920 TGTTTTGGTTTCGCAAGAAAG-CCATTTTTCCGACCAATTTTTGTGAAGTCTAAGTTCGTGCCTC
324 TGCTTTGGTTTCATATGAAAGACGA-TTTTCCTACCAATTTTTGTAAAATCTAAGTTCGTACCTC
* * * * * * *
1322984 AAATGAGACAAAGATGGGTTCTAGTAATGATCTTCTTTCATTTTGTGATTAAGTACTATAAACAC
388 AAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAAGAACTATAAACAC
** * * *
1323049 ATTCTTTTCAGCAGAATAAATT
453 ATTCTCCTCAGTAGGATAAATG
* * * *
1323071 ATATTAATGATTTTCTTTTGCATGGAAATCTGTTTTTTTTGCCCTATGTTCCTTAAAATCAAAGT
1 ATATTGATGATTTTCTTTTGCATGAAAATC--TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * * * * * * * *
1323136 TCATCCTTTAAATAGGACAAGC-TTATATTCTCAAAATAGTCTCCACTATTTTTAGGATTGGGAA
64 TCATCCCTTAAAAAAGACAAGCATCA-ATTCTCAAAACAATCTCCATTATTTTCAAGATTGGGAA
* * * * * * * *
1323200 CCTAAAACACTTTCCCTCCATTAGCATACATAACATTGAAGCTTTAGTGTCGTAAGAAAAGCTTT
128 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * *
1323265 TCTTTCCACCGTTTTTTATAG-ATACAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCAT
193 TCTTTCCACCGTTTTTGATAGAAT-CAAAATTTATCTCTTAAATAAGACAAACATGAATACTCAT
* * * ** *** *
1323329 ACTAATCCCCATTCTTTTCAGGATTAGGCGGCATAAACATAGTCTTCTCATAAGGATACATGACA
257 ACCAAT-CCCATT-TTTTTAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACGCAATA
** * * * * * *
1323394 TTGACACTTTGGTTTCATATGAAAG-GGTTTCTTCCCACTAATTTTTGTAATATCTAAGTTCATA
320 TTGATGCTTTGGTTTCATATGAAAGACGATT-TTCCTACCAATTTTTGTAAAATCTAAGTTCGTA
* * * * *
1323458 CCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAGCACTATAA
384 CCTCAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAAGAACTATAA
*
1323523 ACACATTCT-CTGCATTAGGATAAATG
449 ACACATTCTCCT-CAGTAGGATAAATG
* * *
1323549 ATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTTCCCTGCTTTT-CTTAAAATCAAAGTT
1 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTT
* * * * *
1323613 CTTCCCATAAATAAGATAAGAATCAA
65 CATCCCTTAAAAAAGACAAGCATCAA
1323639 AAAACACATT
Statistics
Matches: 2008, Mismatches: 368, Indels: 147
0.80 0.15 0.06
Matches are distributed among these distances:
453 163 0.08
454 9 0.00
455 164 0.08
456 29 0.01
458 1 0.00
459 4 0.00
460 1 0.00
462 2 0.00
463 3 0.00
464 3 0.00
465 1 0.00
466 1 0.00
467 3 0.00
468 3 0.00
469 2 0.00
471 1 0.00
472 3 0.00
473 1 0.00
474 11 0.01
475 431 0.21
476 537 0.27
477 162 0.08
478 459 0.23
479 14 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
ATCCCTTAAAAAAGACAAGCATCAATTCTCAAAACAATCTCCATTATTTTCAAGATTGGGAACCA
AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
TTCCACCGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAACATGAATACTCATACCA
ATCCCATTTTTTTAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACGCAATATTGATG
CTTTGGTTTCATATGAAAGACGATTTTCCTACCAATTTTTGTAAAATCTAAGTTCGTACCTCAAA
TGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAAGAACTATAAACACATT
CTCCTCAGTAGGATAAATG
Found at i:1325018 original size:475 final size:472
Alignment explanation
Indices: 1323930--1325883 Score: 1941
Period size: 475 Copynumber: 4.1 Consensus size: 472
1323920 GTAATGATCA
* * * * * * * *
1323930 TCATACTAATCACCATTCTATTCAGGACTATGCACCATTAACATAGTCTTCTCATTAGGATACAT
1 TCATAC-AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * *
1323995 GATATTGATGTTTTAGTTTCGCAAGGAAGGCATTCTTCCCACCAATTTTTGTGAAA-TCTAAGCT
65 GATATTGATGTTTTGGTTTCGCAAGAAAGG-TTTCTTCCCACCAATTTTTGT-AAAGTCTAAGTT
* * ** * * * *
1324059 CATGCGTTAAACAAGACAAACCTGGATTCTAGTAATGATATTCTTTCATTTTATGATTAAGCACT
128 CATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACT
* * * * * *
1324124 ATAAACATATTCTCCTTAATAAGATAAAT-ATTATTCATGATTTTTTTTGCACGGAAATCTTTTC
193 ATAAACACATTCTCCTCAGTAGGATAAATGA-TATT-ATGATTTTTTTTGGATGGAAATCTTTTC
* * ** * * **
1324188 TTTGCCCTATTTTCTTTAATGTCAAAGTTCATCCCATAAATAATACCAA-CATCAATCCTCATAA
256 TTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATTGATCCTCATAA
* * * ** * *
1324252 CAGTCTCCATTATTTTCAGGATTTGGAACCTAAAACACTTTCACTTCATTACAAAACGTGACATT
320 CAATCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCACTTCATTAGGATACATGACATT
* * * * * *
1324317 GATG-CTTTGGTGTCGCAAGACATGCTTTTCATTCCACTGTTTGTGA-CGAAATCAAAGTTTTGC
385 GATGACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTT-TGATAG-AATCAAAG-TTTGT
**
1324380 CTCTTAAATTGGACAAACATGAATAG
447 CTCTTAAATAAGACAAACATGAATAG
** * *** * * * * *
1324406 TCATACCAATCCCCATTCTTTTCGGGATGAGGCACTGGAAACATAATATTCTCATAAGCACACAT
1 TCATA-CAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* ** * * * * *
1324471 GACATTGATGCATTGGTTTCCCAAGAATGGCTTTCTTCCCCCCAATTTTTTTAAAGTCTACGTTC
65 GATATTGATGTTTTGGTTTCGCAAGAAAGG-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * *
1324536 GTGCCTCAAA-GA-ATTCAAACATGGATTCTAAT-ACGATTTTCATTCATTTTATGATTAAGCAC
129 ATGCCTCAAATGAGA--CAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCAC
* *
1324598 TATAAACACATTCTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGGATTGAAATCTTTT
192 TATAAACACATTCTCCTCAGTAGGATAAATGATATT-ATGATTTT-TTTTGGATGGAAATCTTTT
* *
1324663 CTTTGCCCTACTTTCCTTAAAATCAAAGTCCATCCCTTAAATAAGATAAGCATTGATCCTCATAA
255 CTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATCCTCATAA
* *
1324728 CAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCAATTCATTAGGATACATGACATT
320 CAATCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCACTTCATTAGGATACATGACATT
* * * * ** *
1324793 GATG-CTTTGGTGCCATAAGAAAGGATTTTCTTTCCACCATTCTTGATAGAATCAAAGTTCGTCT
385 GATGACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTT-TTGATAGAATCAAAGTTTGTCT
* *
1324857 CTTAAATAAGACAAACATAAATAC
449 CTTAAATAAGACAAACATGAATAG
* * * * * * **
1324881 TGATATCAATCCCCATTCTTTTCAAGATTAGGCACCATAATCGTAGTCTTCTCTTTAGTATATGC
1 TCATA-CAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* *
1324946 GATATTGATGTTTTGGTTTCGCAAGAAAGGTATTTTTCTCACCAATTTTTGTAAAGTCTAAGTTC
65 GATATTGATGTTTTGGTTTCGCAAGAAAGGT-TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * *
1325011 ATGCCTCAAATGAGACAAACGTGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAAGCACTG
129 ATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTA
*
1325076 TAAACACATTCTCCTCAGTCGGAT-AATGATATTACTGATTTTTGTTTGCG-TGGAAATCTTTTC
194 TAAACACATTCTCCTCAGTAGGATAAATGATATTA-TGATTTTT-TTTG-GATGGAAATCTTTTC
* * * *
1325139 TTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-TTAGATTCTCAAAA
256 TTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATT-GATCCTCATAA
* * * * *
1325203 CAATCTCCATTAGTTTCAAGATTGGGAACCTAAAACACATTCCCTTTATTGGGATACATGACATT
320 CAATCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCACTTCATTAGGATACATGACATT
* *
1325268 GA-GCCTTTGGTGTCACGAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCT
385 GATGACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTG-TTTTGATAGAATCAAAGTTTGTCT
* **
1325332 CTTAAACAAGGTAAACATGAATAG
449 CTTAAATAAGACAAACATGAATAG
1325356 TCATACTAATCCCCATTCTTTT-AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
1 TCATAC-AATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * ** * * *
1325420 GATATTGATGATTTGCTTTCATATGAAAGGGTTTCTTCCAACCAATTTTTGTAAAATCTAAGTTC
65 GATATTGATGTTTTGGTTTCGCAAGAAA-GGTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * * * *
1325485 ATTCTTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGTACTA
129 ATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTA
* * * * * * * *
1325550 TAAACTCATTCTCCTCATTAGAATATAA-GGTTTTAATGATTTTTTTTTGCTCGAAAATCTTTTC
194 TAAACACATTCTCCTCAGTAGGATA-AATGATATT-ATGATTTTTTTTGGAT-GGAAATCTTTTC
* * * * * * * *
1325614 TTTGCCCTACTTTCCTTAAAATC-AAGTTTATCTCGTAAATAAGATAAGAATTTATTCTCGTAAC
256 TTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATCCTCATAAC
* * ** * * * *
1325678 AATCTTCATTCCTTCCCA-GATTGGGAAGCAAAAACATATTCCCTTCATTAGGATACATGACATT
321 AATCTCCATT-ATTTTCAGGATTGGGAACCTAAAACACATTCACTTCATTAGGATACATGACATT
* * *** * * * * **
1325742 GATGAC-TTGGTGTCGCAAGAAAAGCATTTAACTCCACCGTTTCTAATAAAATCACAGTTTACCT
385 GATGACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTT-TGATAGAATCAAAGTTTGTCT
* * *
1325806 CTTAGATAGGACAAACATGAATAA
449 CTTAAATAAGACAAACATGAATAG
* * * *
1325830 TCTTACCGAT-CCCATT-TATTTTAAGGATTAGGCACCATAAACGTAGTCTTCTCA
1 TCATA-CAATCCCCATTCT-TTTCAA-GATTAGGCACCATAAACATAGTCTTCTCA
1325884 AAATCAAAGT
Statistics
Matches: 1229, Mismatches: 215, Indels: 69
0.81 0.14 0.05
Matches are distributed among these distances:
472 1 0.00
473 13 0.01
474 326 0.27
475 537 0.44
476 348 0.28
477 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (472 bp):
TCATACAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
ATATTGATGTTTTGGTTTCGCAAGAAAGGTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
GCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTATA
AACACATTCTCCTCAGTAGGATAAATGATATTATGATTTTTTTTGGATGGAAATCTTTTCTTTGC
CCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATCCTCATAACAATCT
CCATTATTTTCAGGATTGGGAACCTAAAACACATTCACTTCATTAGGATACATGACATTGATGAC
TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATAG
Done.