genome.fa.s910.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold910
Parameters: 2 7 7 80 10 50 1000
Length:  88566

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2778--2833	1	56.0	1	96	0	103	98	0	1	0	0.13
5895--5932	11	3.3	12	89	10	62	89	10	0	0	0.49
5896--5932	7	4.8	8	83	16	51	89	10	0	0	0.49
9004--9070	33	2.0	33	88	5	100	26	14	14	43	1.85
9021--9051	13	2.4	13	94	0	53	29	12	16	41	1.85
11551--11620	28	2.5	27	77	11	70	24	31	18	25	1.98
11656--11729	27	2.6	28	74	19	66	24	31	21	22	1.99
11713--11829	51	2.3	52	80	7	141	33	25	9	31	1.88
11764--11983	77	2.8	79	81	5	239	30	23	12	34	1.92
12817--12973	60	2.6	62	86	6	225	30	19	26	23	1.98
13039--13155	61	1.9	62	87	5	175	32	17	25	23	1.97
13060--13256	109	1.8	109	89	1	315	31	19	24	24	1.98
13164--13793	61	10.5	61	85	4	809	28	19	26	25	1.99
13164--13818	177	3.7	177	88	2	923	28	19	26	25	1.99
14902--14943	9	4.7	9	94	5	68	0	0	11	88	0.53
14897--14945	12	4.1	12	84	7	55	0	2	10	87	0.62
14904--14945	21	2.0	22	90	4	68	0	0	11	88	0.53
27375--27569	97	2.0	97	97	0	372	28	15	25	30	1.96
29061--29086	13	2.0	13	100	0	52	30	15	15	38	1.88
29093--29170	33	2.4	33	100	0	156	30	17	23	28	1.97
30926--30950	13	1.9	13	100	0	50	32	16	16	36	1.90
34570--34595	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34602--34775	54	3.2	54	100	0	348	28	18	18	35	1.94
35539--35595	20	2.8	20	84	5	71	43	10	14	31	1.79
35559--35665	33	3.0	33	74	21	115	42	14	14	28	1.85
35621--35650	13	2.3	13	94	0	51	40	10	16	33	1.82
36533--36607	33	2.2	35	79	9	84	52	2	26	18	1.59
41025--41491	79	5.9	79	77	6	450	34	12	25	28	1.91
41025--41492	158	3.0	157	80	5	509	34	12	25	27	1.92
41349--41733	129	3.0	128	78	6	425	35	12	23	29	1.91
41555--41672	51	2.3	50	82	1	128	29	13	27	28	1.94
41607--41941	78	4.3	79	75	8	245	38	12	20	28	1.89
41608--41941	158	2.1	157	80	4	370	38	12	20	28	1.89
45573--45639	19	3.8	19	74	22	83	32	11	19	35	1.88
45593--45617	13	1.9	13	100	0	50	36	16	16	32	1.90
45574--45636	32	2.0	32	96	0	117	31	12	20	34	1.90
45659--45712	20	2.7	19	86	8	72	25	20	14	38	1.91
53202--53253	20	2.6	20	87	6	70	34	21	13	30	1.92
54455--54495	20	2.0	20	90	0	64	34	9	19	36	1.85
56898--56922	13	1.9	13	100	0	50	36	16	16	32	1.90
57120--57150	8	3.8	8	95	4	53	61	25	0	12	1.32
63019--63044	13	2.0	13	100	0	52	38	15	15	30	1.88
62997--63064	33	2.1	32	91	2	109	32	13	19	35	1.90
63145--63169	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63179--63217	20	2.0	19	90	5	60	33	10	20	35	1.86
65524--66268	79	9.4	79	86	1	954	33	13	24	27	1.94
67637--67803	35	4.8	35	97	0	316	19	32	5	42	1.74
67678--67778	21	5.5	21	62	29	68	19	31	5	42	1.75
67809--67836	6	4.7	6	100	0	56	28	0	0	71	0.86
68266--68370	43	2.5	40	78	13	113	43	11	28	16	1.82
68418--68521	45	2.4	44	82	7	124	41	16	22	20	1.90
68504--68876	61	6.2	61	80	10	398	27	20	25	26	1.99
68512--68827	122	2.6	121	93	2	526	29	19	25	24	1.99
68505--68876	122	3.1	118	89	4	484	27	20	25	26	1.99
68685--69730	209	4.9	211	73	11	824	26	19	28	25	1.99
68903--69190	122	2.4	119	87	9	399	25	20	27	26	1.99
68899--69213	55	5.4	60	83	9	386	24	21	27	26	1.99
69141--69381	94	2.6	94	93	2	403	24	20	30	24	1.99
69329--69521	55	3.4	56	80	7	205	27	18	24	29	1.98
69535--70020	116	4.2	114	83	9	562	24	20	27	26	1.99
69530--69991	171	2.7	171	88	4	675	25	20	27	26	1.99
69535--70020	55	8.4	61	85	9	571	24	20	27	26	1.99
74132--74213	28	2.9	28	82	7	87	28	17	30	24	1.97
74193--74365	52	3.4	51	80	5	195	32	12	24	30	1.92
74351--74423	27	2.6	28	87	6	96	21	20	32	24	1.97
76974--77000	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77744--78971	55	22.3	55	91	3	1847	20	20	30	28	1.98
78289--78374	26	3.2	26	64	20	68	17	19	34	27	1.95
78509--78591	27	3.0	27	60	16	62	21	19	30	28	1.98
79952--80009	1	58.0	1	77	0	53	0	5	6	87	0.65
79936--80009	13	5.4	13	79	14	78	0	9	5	85	0.75
79951--80007	23	2.4	24	85	5	80	0	7	7	85	0.73

Tables:   1

The End!