Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold911

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13717
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:874 original size:11 final size:11

Alignment explanation


    Indices: 843--875  Score: 57
    Period size: 11  Copynumber: 2.9  Consensus size: 11

        833 TTTGTTGTTA

                        
        843 TTTTTTTTTGTG
          1 TTTTTTTTT-TG

                       
        855 TTTTTTTTTTG
          1 TTTTTTTTTTG

                      
        866 TTTTTTTTTT
          1 TTTTTTTTTT

        876 TTTGCGGAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11   12  0.57
  12    9  0.43

ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91


Consensus pattern (11 bp):   
TTTTTTTTTTG

Found at i:877 original size:13 final size:13

Alignment explanation


    Indices: 831--877  Score: 67
    Period size: 13  Copynumber: 3.6  Consensus size: 13

        821 ATCCGGACCC

                 *     * 
        831 TTTTTGTTGTTAT
          1 TTTTTTTTGTTTT

                      *  
        844 TTTTTTTTGTGTT
          1 TTTTTTTTGTTTT

                         
        857 TTTTTTTTGTTTT
          1 TTTTTTTTGTTTT

                    
        870 TTTTTTTT
          1 TTTTTTTT

        878 TGCGGAGGAT


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  13   30  1.00

ACGTcount: A:0.02, C:0.00, G:0.11, T:0.87


Consensus pattern (13 bp):   
TTTTTTTTGTTTT
Done.